2022-07-16T13:00:40,145 Created temporary directory: /tmp/pip-ephem-wheel-cache-myeeq115
2022-07-16T13:00:40,151 Created temporary directory: /tmp/pip-build-tracker-4w2xa4uq
2022-07-16T13:00:40,152 Initialized build tracking at /tmp/pip-build-tracker-4w2xa4uq
2022-07-16T13:00:40,152 Created build tracker: /tmp/pip-build-tracker-4w2xa4uq
2022-07-16T13:00:40,152 Entered build tracker: /tmp/pip-build-tracker-4w2xa4uq
2022-07-16T13:00:40,153 Created temporary directory: /tmp/pip-wheel-doc1pt7q
2022-07-16T13:00:40,226 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-07-16T13:00:40,235 2 location(s) to search for versions of pybiotk:
2022-07-16T13:00:40,235 * https://pypi.org/simple/pybiotk/
2022-07-16T13:00:40,235 * https://www.piwheels.org/simple/pybiotk/
2022-07-16T13:00:40,236 Fetching project page and analyzing links: https://pypi.org/simple/pybiotk/
2022-07-16T13:00:40,237 Getting page https://pypi.org/simple/pybiotk/
2022-07-16T13:00:40,240 Found index url https://pypi.org/simple
2022-07-16T13:00:40,355   Found link https://files.pythonhosted.org/packages/36/39/63bca353f534b61d1b4d184594aa908e15c1ed647e1e722bfcf9ee064dbc/pybiotk-1.0.3.tar.gz#sha256=d1084859e25ae3e660f8ebdc6b9e46343b087390472951edcdfe01ebc6893e2f (from https://pypi.org/simple/pybiotk/), version: 1.0.3
2022-07-16T13:00:40,356   Found link https://files.pythonhosted.org/packages/c2/63/fd2b3ca946c51dc23242f873ba230b22d55298bd2eb2df0fe06a648e6849/pybiotk-1.0.4.tar.gz#sha256=54adb083dc66b5545559eedca9edf8df2723583bc40e366cd60ed93ad9248bef (from https://pypi.org/simple/pybiotk/), version: 1.0.4
2022-07-16T13:00:40,357 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybiotk/
2022-07-16T13:00:40,358 Getting page https://www.piwheels.org/simple/pybiotk/
2022-07-16T13:00:40,360 Found index url https://www.piwheels.org/simple
2022-07-16T13:00:40,577   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp37-cp37m-linux_armv7l.whl#sha256=1e5895fe1aa6a3e6127f180defd7a420edf6f8b5f4f1b689995f9758b7286846 (from https://www.piwheels.org/simple/pybiotk/)
2022-07-16T13:00:40,577   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp37-cp37m-linux_armv6l.whl#sha256=1e5895fe1aa6a3e6127f180defd7a420edf6f8b5f4f1b689995f9758b7286846 (from https://www.piwheels.org/simple/pybiotk/)
2022-07-16T13:00:40,578   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=3d07a856b5dfd6012a973e73b174a6b8d70ae723b22a5396f9e1323a3396a327 (from https://www.piwheels.org/simple/pybiotk/)
2022-07-16T13:00:40,579   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=3d07a856b5dfd6012a973e73b174a6b8d70ae723b22a5396f9e1323a3396a327 (from https://www.piwheels.org/simple/pybiotk/)
2022-07-16T13:00:40,579   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=68c34ca6656477c1de6691804d909876e1f42817256079672904805fc0971aca (from https://www.piwheels.org/simple/pybiotk/)
2022-07-16T13:00:40,580   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=68c34ca6656477c1de6691804d909876e1f42817256079672904805fc0971aca (from https://www.piwheels.org/simple/pybiotk/)
2022-07-16T13:00:40,580 Skipping link: not a file: https://www.piwheels.org/simple/pybiotk/
2022-07-16T13:00:40,581 Skipping link: not a file: https://pypi.org/simple/pybiotk/
2022-07-16T13:00:40,626 Given no hashes to check 1 links for project 'pybiotk': discarding no candidates
2022-07-16T13:00:40,668 Collecting pybiotk==1.0.4
2022-07-16T13:00:40,672   Created temporary directory: /tmp/pip-unpack-8t2rc8gi
2022-07-16T13:00:40,764   Downloading pybiotk-1.0.4.tar.gz (87 kB)
2022-07-16T13:00:41,295   Added pybiotk==1.0.4 from https://files.pythonhosted.org/packages/c2/63/fd2b3ca946c51dc23242f873ba230b22d55298bd2eb2df0fe06a648e6849/pybiotk-1.0.4.tar.gz#sha256=54adb083dc66b5545559eedca9edf8df2723583bc40e366cd60ed93ad9248bef to build tracker '/tmp/pip-build-tracker-4w2xa4uq'
2022-07-16T13:00:41,312   Created temporary directory: /tmp/pip-build-env-60pathd5
2022-07-16T13:00:41,333   Created temporary directory: /tmp/pip-standalone-pip-axq8fhw3
2022-07-16T13:00:43,668   Installing build dependencies: started
2022-07-16T13:00:43,670   Running command pip subprocess to install build dependencies
2022-07-16T13:00:55,033   Using pip 22.1.2 from /tmp/pip-standalone-pip-axq8fhw3/__env_pip__.zip/pip (python 3.9)
2022-07-16T13:00:56,664   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-07-16T13:01:00,660   Collecting setuptools>=46.1.0
2022-07-16T13:01:00,937     Using cached https://www.piwheels.org/simple/setuptools/setuptools-63.2.0-py3-none-any.whl (1.2 MB)
2022-07-16T13:01:01,923   Collecting setuptools_scm[toml]>=5
2022-07-16T13:01:01,964     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.0.5-py3-none-any.whl (42 kB)
2022-07-16T13:01:02,545   Collecting wheel
2022-07-16T13:01:02,579     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-07-16T13:01:06,105   Collecting Cython>=0.29.30
2022-07-16T13:01:07,225     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.30-cp39-cp39-linux_armv7l.whl (5.0 MB)
2022-07-16T13:01:08,140   Collecting packaging>=20.0
2022-07-16T13:01:08,174     Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB)
2022-07-16T13:01:08,442   Collecting typing-extensions
2022-07-16T13:01:08,490     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.3.0-py3-none-any.whl (25 kB)
2022-07-16T13:01:08,784   Collecting tomli>=1.0.0
2022-07-16T13:01:08,815     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2022-07-16T13:01:10,454   Collecting pyparsing!=3.0.5,>=2.0.2
2022-07-16T13:01:10,493     Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.9-py3-none-any.whl (98 kB)
2022-07-16T13:01:18,048   Installing collected packages: wheel, typing-extensions, tomli, setuptools, pyparsing, Cython, packaging, setuptools_scm
2022-07-16T13:01:18,351     Creating /tmp/pip-build-env-60pathd5/overlay/bin
2022-07-16T13:01:18,356     changing mode of /tmp/pip-build-env-60pathd5/overlay/bin/wheel to 755
2022-07-16T13:01:31,127     changing mode of /tmp/pip-build-env-60pathd5/overlay/bin/cygdb to 755
2022-07-16T13:01:31,131     changing mode of /tmp/pip-build-env-60pathd5/overlay/bin/cython to 755
2022-07-16T13:01:31,135     changing mode of /tmp/pip-build-env-60pathd5/overlay/bin/cythonize to 755
2022-07-16T13:01:37,639   Successfully installed Cython-0.29.30 packaging-21.3 pyparsing-3.0.9 setuptools-63.2.0 setuptools_scm-7.0.5 tomli-2.0.1 typing-extensions-4.3.0 wheel-0.37.1
2022-07-16T13:01:38,466   Installing build dependencies: finished with status 'done'
2022-07-16T13:01:38,492   Getting requirements to build wheel: started
2022-07-16T13:01:38,494   Running command Getting requirements to build wheel
2022-07-16T13:01:42,459   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-doc1pt7q/pybiotk_eefc5b410bd44af9b208c46067ab6033/src/bx/bitset.pyx
2022-07-16T13:01:42,460     tree = Parsing.p_module(s, pxd, full_module_name)
2022-07-16T13:01:43,409   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-doc1pt7q/pybiotk_eefc5b410bd44af9b208c46067ab6033/src/bx/cluster.pyx
2022-07-16T13:01:43,409     tree = Parsing.p_module(s, pxd, full_module_name)
2022-07-16T13:01:43,673   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-doc1pt7q/pybiotk_eefc5b410bd44af9b208c46067ab6033/src/bx/intersection.pyx
2022-07-16T13:01:43,674     tree = Parsing.p_module(s, pxd, full_module_name)
2022-07-16T13:01:45,158   Compiling src/bx/bitset.pyx because it changed.
2022-07-16T13:01:45,158   Compiling src/bx/cluster.pyx because it changed.
2022-07-16T13:01:45,158   Compiling src/bx/intersection.pyx because it changed.
2022-07-16T13:01:45,159   [1/3] Cythonizing src/bx/bitset.pyx
2022-07-16T13:01:45,159   [2/3] Cythonizing src/bx/cluster.pyx
2022-07-16T13:01:45,159   [3/3] Cythonizing src/bx/intersection.pyx
2022-07-16T13:01:49,216   running egg_info
2022-07-16T13:01:49,820   writing src/pybiotk.egg-info/PKG-INFO
2022-07-16T13:01:50,387   writing dependency_links to src/pybiotk.egg-info/dependency_links.txt
2022-07-16T13:01:52,085   writing entry points to src/pybiotk.egg-info/entry_points.txt
2022-07-16T13:01:53,215   writing requirements to src/pybiotk.egg-info/requires.txt
2022-07-16T13:01:53,780   writing top-level names to src/pybiotk.egg-info/top_level.txt
2022-07-16T13:01:54,431   package init file 'src/bx/__init__.py' not found (or not a regular file)
2022-07-16T13:01:55,227   listing git files failed - pretending there aren't any
2022-07-16T13:01:55,251   reading manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-07-16T13:01:55,269   adding license file 'LICENSE.txt'
2022-07-16T13:01:55,285   writing manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-07-16T13:01:55,649   Getting requirements to build wheel: finished with status 'done'
2022-07-16T13:01:55,678   Created temporary directory: /tmp/pip-modern-metadata-mvkbjxom
2022-07-16T13:01:55,683   Preparing metadata (pyproject.toml): started
2022-07-16T13:01:55,685   Running command Preparing metadata (pyproject.toml)
2022-07-16T13:02:02,683   running dist_info
2022-07-16T13:02:03,306   creating /tmp/pip-modern-metadata-mvkbjxom/pybiotk.egg-info
2022-07-16T13:02:03,905   writing /tmp/pip-modern-metadata-mvkbjxom/pybiotk.egg-info/PKG-INFO
2022-07-16T13:02:04,470   writing dependency_links to /tmp/pip-modern-metadata-mvkbjxom/pybiotk.egg-info/dependency_links.txt
2022-07-16T13:02:06,160   writing entry points to /tmp/pip-modern-metadata-mvkbjxom/pybiotk.egg-info/entry_points.txt
2022-07-16T13:02:07,287   writing requirements to /tmp/pip-modern-metadata-mvkbjxom/pybiotk.egg-info/requires.txt
2022-07-16T13:02:07,850   writing top-level names to /tmp/pip-modern-metadata-mvkbjxom/pybiotk.egg-info/top_level.txt
2022-07-16T13:02:07,853   writing manifest file '/tmp/pip-modern-metadata-mvkbjxom/pybiotk.egg-info/SOURCES.txt'
2022-07-16T13:02:08,492   package init file 'src/bx/__init__.py' not found (or not a regular file)
2022-07-16T13:02:09,269   listing git files failed - pretending there aren't any
2022-07-16T13:02:09,290   reading manifest file '/tmp/pip-modern-metadata-mvkbjxom/pybiotk.egg-info/SOURCES.txt'
2022-07-16T13:02:09,294   adding license file 'LICENSE.txt'
2022-07-16T13:02:09,306   writing manifest file '/tmp/pip-modern-metadata-mvkbjxom/pybiotk.egg-info/SOURCES.txt'
2022-07-16T13:02:09,309   creating '/tmp/pip-modern-metadata-mvkbjxom/pybiotk-1.0.4.dist-info'
2022-07-16T13:02:09,544   adding license file "LICENSE.txt" (matched pattern "LICENSE.txt")
2022-07-16T13:02:09,883   Preparing metadata (pyproject.toml): finished with status 'done'
2022-07-16T13:02:09,898   Source in /tmp/pip-wheel-doc1pt7q/pybiotk_eefc5b410bd44af9b208c46067ab6033 has version 1.0.4, which satisfies requirement pybiotk==1.0.4 from https://files.pythonhosted.org/packages/c2/63/fd2b3ca946c51dc23242f873ba230b22d55298bd2eb2df0fe06a648e6849/pybiotk-1.0.4.tar.gz#sha256=54adb083dc66b5545559eedca9edf8df2723583bc40e366cd60ed93ad9248bef
2022-07-16T13:02:09,900   Removed pybiotk==1.0.4 from https://files.pythonhosted.org/packages/c2/63/fd2b3ca946c51dc23242f873ba230b22d55298bd2eb2df0fe06a648e6849/pybiotk-1.0.4.tar.gz#sha256=54adb083dc66b5545559eedca9edf8df2723583bc40e366cd60ed93ad9248bef from build tracker '/tmp/pip-build-tracker-4w2xa4uq'
2022-07-16T13:02:09,909 Created temporary directory: /tmp/pip-unpack-58jje11j
2022-07-16T13:02:09,911 Building wheels for collected packages: pybiotk
2022-07-16T13:02:09,919   Created temporary directory: /tmp/pip-wheel-5xmjbybq
2022-07-16T13:02:09,920   Destination directory: /tmp/pip-wheel-5xmjbybq
2022-07-16T13:02:09,925   Building wheel for pybiotk (pyproject.toml): started
2022-07-16T13:02:09,927   Running command Building wheel for pybiotk (pyproject.toml)
2022-07-16T13:02:16,505   running bdist_wheel
2022-07-16T13:02:17,202   running build
2022-07-16T13:02:17,203   running build_py
2022-07-16T13:02:17,794   package init file 'src/bx/__init__.py' not found (or not a regular file)
2022-07-16T13:02:17,798   creating build/lib.linux-armv7l-cpython-39
2022-07-16T13:02:17,799   creating build/lib.linux-armv7l-cpython-39/pybiotk
2022-07-16T13:02:17,801   copying src/pybiotk/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk
2022-07-16T13:02:17,805   creating build/lib.linux-armv7l-cpython-39/stream
2022-07-16T13:02:17,806   copying src/stream/pipe.py -> build/lib.linux-armv7l-cpython-39/stream
2022-07-16T13:02:17,811   copying src/stream/stream.py -> build/lib.linux-armv7l-cpython-39/stream
2022-07-16T13:02:17,815   copying src/stream/__init__.py -> build/lib.linux-armv7l-cpython-39/stream
2022-07-16T13:02:17,820   creating build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-07-16T13:02:17,822   copying src/pybiotk/io/gtf.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-07-16T13:02:17,827   copying src/pybiotk/io/bw.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-07-16T13:02:17,831   copying src/pybiotk/io/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-07-16T13:02:17,834   copying src/pybiotk/io/bam.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-07-16T13:02:17,839   copying src/pybiotk/io/fastq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-07-16T13:02:17,843   copying src/pybiotk/io/fasta.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-07-16T13:02:17,847   copying src/pybiotk/io/bed.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-07-16T13:02:17,852   creating build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-07-16T13:02:17,853   copying src/pybiotk/data/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-07-16T13:02:17,858   creating build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-07-16T13:02:17,860   copying src/pybiotk/convert/fq2fasta.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-07-16T13:02:17,863   copying src/pybiotk/convert/bam2fastx.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-07-16T13:02:17,867   copying src/pybiotk/convert/gtf2bed.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-07-16T13:02:17,871   copying src/pybiotk/convert/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-07-16T13:02:17,874   copying src/pybiotk/convert/bampe_order_by_name.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-07-16T13:02:17,877   copying src/pybiotk/convert/bed2bedgraph.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-07-16T13:02:17,882   creating build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-07-16T13:02:17,883   copying src/pybiotk/annodb/merged_transcript.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-07-16T13:02:17,888   copying src/pybiotk/annodb/gene.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-07-16T13:02:17,892   copying src/pybiotk/annodb/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-07-16T13:02:17,896   copying src/pybiotk/annodb/transcript.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-07-16T13:02:17,900   copying src/pybiotk/annodb/anno.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-07-16T13:02:17,907   creating build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-16T13:02:17,910   copying src/pybiotk/utils/fasta_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-16T13:02:17,914   copying src/pybiotk/utils/reference_count.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-16T13:02:17,918   copying src/pybiotk/utils/merge_subseq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-16T13:02:17,922   copying src/pybiotk/utils/gtf_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-16T13:02:17,926   copying src/pybiotk/utils/rmats_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-16T13:02:17,930   copying src/pybiotk/utils/pyanno.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-16T13:02:17,935   copying src/pybiotk/utils/fastq_uniq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-16T13:02:17,939   copying src/pybiotk/utils/summary_log.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-16T13:02:17,944   copying src/pybiotk/utils/subseq_analysis.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-16T13:02:17,949   copying src/pybiotk/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-16T13:02:17,953   copying src/pybiotk/utils/seq_random.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-16T13:02:17,957   copying src/pybiotk/utils/merge_row.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-16T13:02:17,962   copying src/pybiotk/utils/bam_random.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-16T13:02:17,966   copying src/pybiotk/utils/fragment_size.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-16T13:02:17,970   copying src/pybiotk/utils/read_tables.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-16T13:02:17,974   copying src/pybiotk/utils/utils.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-16T13:02:17,979   copying src/pybiotk/utils/normalize.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-16T13:02:17,985   creating build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-07-16T13:02:17,987   copying src/pybiotk/intervals/grange.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-07-16T13:02:17,992   copying src/pybiotk/intervals/merge_intervals.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-07-16T13:02:17,996   copying src/pybiotk/intervals/merge_bed3.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-07-16T13:02:18,000   copying src/pybiotk/intervals/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-07-16T13:02:18,004   running egg_info
2022-07-16T13:02:19,205   writing src/pybiotk.egg-info/PKG-INFO
2022-07-16T13:02:19,759   writing dependency_links to src/pybiotk.egg-info/dependency_links.txt
2022-07-16T13:02:21,423   writing entry points to src/pybiotk.egg-info/entry_points.txt
2022-07-16T13:02:22,531   writing requirements to src/pybiotk.egg-info/requires.txt
2022-07-16T13:02:23,088   writing top-level names to src/pybiotk.egg-info/top_level.txt
2022-07-16T13:02:23,218   listing git files failed - pretending there aren't any
2022-07-16T13:02:23,239   reading manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-07-16T13:02:23,257   adding license file 'LICENSE.txt'
2022-07-16T13:02:23,273   writing manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-07-16T13:02:23,285   creating build/lib.linux-armv7l-cpython-39/bx
2022-07-16T13:02:23,287   copying src/bx/binBits.c -> build/lib.linux-armv7l-cpython-39/bx
2022-07-16T13:02:23,293   copying src/bx/binBits.h -> build/lib.linux-armv7l-cpython-39/bx
2022-07-16T13:02:23,298   copying src/bx/bits.c -> build/lib.linux-armv7l-cpython-39/bx
2022-07-16T13:02:23,303   copying src/bx/bits.h -> build/lib.linux-armv7l-cpython-39/bx
2022-07-16T13:02:23,308   copying src/bx/bitset.pyx -> build/lib.linux-armv7l-cpython-39/bx
2022-07-16T13:02:23,313   copying src/bx/cluster.c -> build/lib.linux-armv7l-cpython-39/bx
2022-07-16T13:02:23,318   copying src/bx/cluster.h -> build/lib.linux-armv7l-cpython-39/bx
2022-07-16T13:02:23,322   copying src/bx/cluster.pyx -> build/lib.linux-armv7l-cpython-39/bx
2022-07-16T13:02:23,327   copying src/bx/common.c -> build/lib.linux-armv7l-cpython-39/bx
2022-07-16T13:02:23,331   copying src/bx/common.h -> build/lib.linux-armv7l-cpython-39/bx
2022-07-16T13:02:23,336   copying src/bx/intersection.pyx -> build/lib.linux-armv7l-cpython-39/bx
2022-07-16T13:02:23,342   copying src/pybiotk/data/hg38.chrom.sizes -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-07-16T13:02:23,347   copying src/pybiotk/data/mm10.chrom.sizes -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-07-16T13:02:23,363   running build_ext
2022-07-16T13:02:23,376   building 'pybiotk.bx.bitset' extension
2022-07-16T13:02:23,378   creating build/temp.linux-armv7l-cpython-39
2022-07-16T13:02:23,379   creating build/temp.linux-armv7l-cpython-39/build
2022-07-16T13:02:23,380   creating build/temp.linux-armv7l-cpython-39/build/src
2022-07-16T13:02:23,382   creating build/temp.linux-armv7l-cpython-39/build/src/bx
2022-07-16T13:02:23,384   creating build/temp.linux-armv7l-cpython-39/src
2022-07-16T13:02:23,386   creating build/temp.linux-armv7l-cpython-39/src/bx
2022-07-16T13:02:23,388   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c build/src/bx/bitset.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/bitset.o
2022-07-16T13:02:35,727   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/binBits.c -o build/temp.linux-armv7l-cpython-39/src/bx/binBits.o
2022-07-16T13:02:36,656   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/bits.c -o build/temp.linux-armv7l-cpython-39/src/bx/bits.o
2022-07-16T13:02:36,953   src/bx/bits.c:9:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
2022-07-16T13:02:36,953       9 | static char const rcsid[] = "$Id: bits.c,v 1.20 2008/03/25 16:32:31 angie Exp $";
2022-07-16T13:02:36,954         |                   ^~~~~
2022-07-16T13:02:37,596   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/common.c -o build/temp.linux-armv7l-cpython-39/src/bx/common.o
2022-07-16T13:02:38,033   creating build/lib.linux-armv7l-cpython-39/pybiotk/bx
2022-07-16T13:02:38,034   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/bitset.o build/temp.linux-armv7l-cpython-39/src/bx/binBits.o build/temp.linux-armv7l-cpython-39/src/bx/bits.o build/temp.linux-armv7l-cpython-39/src/bx/common.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so
2022-07-16T13:02:38,357   building 'pybiotk.bx.cluster' extension
2022-07-16T13:02:38,359   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c build/src/bx/cluster.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/cluster.o
2022-07-16T13:02:43,207   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/cluster.c -o build/temp.linux-armv7l-cpython-39/src/bx/cluster.o
2022-07-16T13:02:44,361   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/cluster.o build/temp.linux-armv7l-cpython-39/src/bx/cluster.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so
2022-07-16T13:02:44,610   building 'pybiotk.bx.intersection' extension
2022-07-16T13:02:44,611   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c build/src/bx/intersection.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/intersection.o
2022-07-16T13:03:05,657   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/intersection.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so
2022-07-16T13:03:05,979   running build_scripts
2022-07-16T13:03:05,980   creating build/scripts-3.9
2022-07-16T13:03:05,983   copying rscripts/plot_peak_width.R -> build/scripts-3.9
2022-07-16T13:03:05,989   copying rscripts/plot_hist.R -> build/scripts-3.9
2022-07-16T13:03:05,993   copying rscripts/plot_rep_cor.R -> build/scripts-3.9
2022-07-16T13:03:05,997   copying rscripts/plot_corr.R -> build/scripts-3.9
2022-07-16T13:03:06,001   copying rscripts/peak_anno.R -> build/scripts-3.9
2022-07-16T13:03:06,005   copying rscripts/plot_bar.R -> build/scripts-3.9
2022-07-16T13:03:06,009   copying rscripts/plot_summary.R -> build/scripts-3.9
2022-07-16T13:03:06,014   copying rscripts/diff_expr_edgeR.R -> build/scripts-3.9
2022-07-16T13:03:06,020   copying rscripts/plot_deeptools_fragmentsize.R -> build/scripts-3.9
2022-07-16T13:03:06,024   copying rscripts/plot_venn.R -> build/scripts-3.9
2022-07-16T13:03:06,028   copying rscripts/plot_FRiPs.R -> build/scripts-3.9
2022-07-16T13:03:06,032   copying rscripts/diff_expr_DESeq2.R -> build/scripts-3.9
2022-07-16T13:03:06,037   copying rscripts/diff_expr_plot.R -> build/scripts-3.9
2022-07-16T13:03:06,042   copying scripts/fasta_u2t.sh -> build/scripts-3.9
2022-07-16T13:03:06,046   copying scripts/merge_subseq.sh -> build/scripts-3.9
2022-07-16T13:03:06,051   copying scripts/gtfparser.sh -> build/scripts-3.9
2022-07-16T13:03:06,055   copying scripts/get_chrom_length.sh -> build/scripts-3.9
2022-07-16T13:03:06,059   copying scripts/fasta_len.sh -> build/scripts-3.9
2022-07-16T13:03:06,063   copying scripts/fastq_len.sh -> build/scripts-3.9
2022-07-16T13:03:06,067   copying scripts/remove_duplicates.sh -> build/scripts-3.9
2022-07-16T13:03:07,281   installing to build/bdist.linux-armv7l/wheel
2022-07-16T13:03:07,282   running install
2022-07-16T13:03:07,345   running install_lib
2022-07-16T13:03:07,940   creating build/bdist.linux-armv7l
2022-07-16T13:03:07,941   creating build/bdist.linux-armv7l/wheel
2022-07-16T13:03:07,944   creating build/bdist.linux-armv7l/wheel/bx
2022-07-16T13:03:07,946   copying build/lib.linux-armv7l-cpython-39/bx/cluster.pyx -> build/bdist.linux-armv7l/wheel/bx
2022-07-16T13:03:07,950   copying build/lib.linux-armv7l-cpython-39/bx/bits.h -> build/bdist.linux-armv7l/wheel/bx
2022-07-16T13:03:07,953   copying build/lib.linux-armv7l-cpython-39/bx/bitset.pyx -> build/bdist.linux-armv7l/wheel/bx
2022-07-16T13:03:07,958   copying build/lib.linux-armv7l-cpython-39/bx/common.c -> build/bdist.linux-armv7l/wheel/bx
2022-07-16T13:03:07,961   copying build/lib.linux-armv7l-cpython-39/bx/bits.c -> build/bdist.linux-armv7l/wheel/bx
2022-07-16T13:03:07,966   copying build/lib.linux-armv7l-cpython-39/bx/binBits.h -> build/bdist.linux-armv7l/wheel/bx
2022-07-16T13:03:07,969   copying build/lib.linux-armv7l-cpython-39/bx/common.h -> build/bdist.linux-armv7l/wheel/bx
2022-07-16T13:03:07,972   copying build/lib.linux-armv7l-cpython-39/bx/binBits.c -> build/bdist.linux-armv7l/wheel/bx
2022-07-16T13:03:07,977   copying build/lib.linux-armv7l-cpython-39/bx/intersection.pyx -> build/bdist.linux-armv7l/wheel/bx
2022-07-16T13:03:07,982   copying build/lib.linux-armv7l-cpython-39/bx/cluster.c -> build/bdist.linux-armv7l/wheel/bx
2022-07-16T13:03:07,987   copying build/lib.linux-armv7l-cpython-39/bx/cluster.h -> build/bdist.linux-armv7l/wheel/bx
2022-07-16T13:03:07,992   creating build/bdist.linux-armv7l/wheel/pybiotk
2022-07-16T13:03:07,994   creating build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-07-16T13:03:07,996   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-07-16T13:03:08,012   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-07-16T13:03:08,048   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-07-16T13:03:08,076   creating build/bdist.linux-armv7l/wheel/pybiotk/io
2022-07-16T13:03:08,077   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/gtf.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-07-16T13:03:08,083   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bw.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-07-16T13:03:08,087   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-07-16T13:03:08,091   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bam.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-07-16T13:03:08,096   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/fastq.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-07-16T13:03:08,100   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/fasta.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-07-16T13:03:08,104   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bed.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-07-16T13:03:08,110   creating build/bdist.linux-armv7l/wheel/pybiotk/data
2022-07-16T13:03:08,111   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/pybiotk/data
2022-07-16T13:03:08,116   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/data
2022-07-16T13:03:08,119   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/mm10.chrom.sizes -> build/bdist.linux-armv7l/wheel/pybiotk/data
2022-07-16T13:03:08,123   creating build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-07-16T13:03:08,124   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/fq2fasta.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-07-16T13:03:08,129   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bam2fastx.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-07-16T13:03:08,133   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/gtf2bed.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-07-16T13:03:08,138   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-07-16T13:03:08,141   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bampe_order_by_name.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-07-16T13:03:08,144   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bed2bedgraph.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-07-16T13:03:08,149   creating build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-07-16T13:03:08,151   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/merged_transcript.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-07-16T13:03:08,156   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/gene.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-07-16T13:03:08,160   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-07-16T13:03:08,163   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/transcript.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-07-16T13:03:08,167   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/anno.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-07-16T13:03:08,172   copying build/lib.linux-armv7l-cpython-39/pybiotk/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk
2022-07-16T13:03:08,177   creating build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-16T13:03:08,179   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fasta_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-16T13:03:08,183   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/reference_count.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-16T13:03:08,187   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/merge_subseq.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-16T13:03:08,190   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/gtf_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-16T13:03:08,193   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/rmats_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-16T13:03:08,197   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/pyanno.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-16T13:03:08,201   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastq_uniq.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-16T13:03:08,205   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/summary_log.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-16T13:03:08,210   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/subseq_analysis.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-16T13:03:08,214   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-16T13:03:08,219   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/seq_random.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-16T13:03:08,223   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/merge_row.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-16T13:03:08,228   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/bam_random.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-16T13:03:08,232   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fragment_size.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-16T13:03:08,236   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/read_tables.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-16T13:03:08,240   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/utils.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-16T13:03:08,244   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/normalize.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-16T13:03:08,249   creating build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-07-16T13:03:08,250   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/grange.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-07-16T13:03:08,254   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/merge_intervals.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-07-16T13:03:08,259   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/merge_bed3.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-07-16T13:03:08,263   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-07-16T13:03:08,268   creating build/bdist.linux-armv7l/wheel/stream
2022-07-16T13:03:08,270   copying build/lib.linux-armv7l-cpython-39/stream/pipe.py -> build/bdist.linux-armv7l/wheel/stream
2022-07-16T13:03:08,275   copying build/lib.linux-armv7l-cpython-39/stream/stream.py -> build/bdist.linux-armv7l/wheel/stream
2022-07-16T13:03:08,280   copying build/lib.linux-armv7l-cpython-39/stream/__init__.py -> build/bdist.linux-armv7l/wheel/stream
2022-07-16T13:03:08,284   running install_egg_info
2022-07-16T13:03:08,882   Copying src/pybiotk.egg-info to build/bdist.linux-armv7l/wheel/pybiotk-1.0.4-py3.9.egg-info
2022-07-16T13:03:08,914   running install_scripts
2022-07-16T13:03:08,971   creating build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data
2022-07-16T13:03:08,972   creating build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:08,975   copying build/scripts-3.9/plot_peak_width.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:08,981   copying build/scripts-3.9/plot_hist.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:08,985   copying build/scripts-3.9/plot_rep_cor.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:08,989   copying build/scripts-3.9/fasta_u2t.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:08,993   copying build/scripts-3.9/plot_corr.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:08,997   copying build/scripts-3.9/peak_anno.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:09,002   copying build/scripts-3.9/plot_bar.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:09,006   copying build/scripts-3.9/plot_summary.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:09,011   copying build/scripts-3.9/merge_subseq.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:09,015   copying build/scripts-3.9/diff_expr_edgeR.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:09,020   copying build/scripts-3.9/plot_deeptools_fragmentsize.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:09,024   copying build/scripts-3.9/plot_venn.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:09,028   copying build/scripts-3.9/plot_FRiPs.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:09,032   copying build/scripts-3.9/gtfparser.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:09,036   copying build/scripts-3.9/diff_expr_DESeq2.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:09,041   copying build/scripts-3.9/get_chrom_length.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:09,045   copying build/scripts-3.9/fasta_len.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:09,049   copying build/scripts-3.9/fastq_len.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:09,053   copying build/scripts-3.9/remove_duplicates.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:09,058   copying build/scripts-3.9/diff_expr_plot.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts
2022-07-16T13:03:09,062   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/plot_peak_width.R to 755
2022-07-16T13:03:09,063   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/plot_hist.R to 755
2022-07-16T13:03:09,064   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/plot_rep_cor.R to 755
2022-07-16T13:03:09,065   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/fasta_u2t.sh to 755
2022-07-16T13:03:09,066   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/plot_corr.R to 755
2022-07-16T13:03:09,067   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/peak_anno.R to 755
2022-07-16T13:03:09,068   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/plot_bar.R to 755
2022-07-16T13:03:09,069   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/plot_summary.R to 755
2022-07-16T13:03:09,070   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/merge_subseq.sh to 755
2022-07-16T13:03:09,071   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/diff_expr_edgeR.R to 755
2022-07-16T13:03:09,072   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/plot_deeptools_fragmentsize.R to 755
2022-07-16T13:03:09,073   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/plot_venn.R to 755
2022-07-16T13:03:09,074   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/plot_FRiPs.R to 755
2022-07-16T13:03:09,075   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/gtfparser.sh to 755
2022-07-16T13:03:09,076   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/diff_expr_DESeq2.R to 755
2022-07-16T13:03:09,077   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/get_chrom_length.sh to 755
2022-07-16T13:03:09,078   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/fasta_len.sh to 755
2022-07-16T13:03:09,079   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/fastq_len.sh to 755
2022-07-16T13:03:09,080   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/remove_duplicates.sh to 755
2022-07-16T13:03:09,081   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.data/scripts/diff_expr_plot.R to 755
2022-07-16T13:03:09,183   adding license file "LICENSE.txt" (matched pattern "LICENSE.txt")
2022-07-16T13:03:09,234   creating build/bdist.linux-armv7l/wheel/pybiotk-1.0.4.dist-info/WHEEL
2022-07-16T13:03:09,240   creating '/tmp/pip-wheel-5xmjbybq/tmp27b_amub/pybiotk-1.0.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-07-16T13:03:09,246   adding 'bx/binBits.c'
2022-07-16T13:03:09,249   adding 'bx/binBits.h'
2022-07-16T13:03:09,253   adding 'bx/bits.c'
2022-07-16T13:03:09,256   adding 'bx/bits.h'
2022-07-16T13:03:09,260   adding 'bx/bitset.pyx'
2022-07-16T13:03:09,264   adding 'bx/cluster.c'
2022-07-16T13:03:09,268   adding 'bx/cluster.h'
2022-07-16T13:03:09,271   adding 'bx/cluster.pyx'
2022-07-16T13:03:09,274   adding 'bx/common.c'
2022-07-16T13:03:09,277   adding 'bx/common.h'
2022-07-16T13:03:09,283   adding 'bx/intersection.pyx'
2022-07-16T13:03:09,287   adding 'pybiotk/__init__.py'
2022-07-16T13:03:09,291   adding 'pybiotk/annodb/__init__.py'
2022-07-16T13:03:09,294   adding 'pybiotk/annodb/anno.py'
2022-07-16T13:03:09,299   adding 'pybiotk/annodb/gene.py'
2022-07-16T13:03:09,303   adding 'pybiotk/annodb/merged_transcript.py'
2022-07-16T13:03:09,306   adding 'pybiotk/annodb/transcript.py'
2022-07-16T13:03:09,539   adding 'pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so'
2022-07-16T13:03:09,633   adding 'pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so'
2022-07-16T13:03:09,976   adding 'pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so'
2022-07-16T13:03:09,992   adding 'pybiotk/convert/__init__.py'
2022-07-16T13:03:09,995   adding 'pybiotk/convert/bam2fastx.py'
2022-07-16T13:03:09,998   adding 'pybiotk/convert/bampe_order_by_name.py'
2022-07-16T13:03:10,000   adding 'pybiotk/convert/bed2bedgraph.py'
2022-07-16T13:03:10,003   adding 'pybiotk/convert/fq2fasta.py'
2022-07-16T13:03:10,005   adding 'pybiotk/convert/gtf2bed.py'
2022-07-16T13:03:10,009   adding 'pybiotk/data/__init__.py'
2022-07-16T13:03:10,015   adding 'pybiotk/data/hg38.chrom.sizes'
2022-07-16T13:03:10,018   adding 'pybiotk/data/mm10.chrom.sizes'
2022-07-16T13:03:10,021   adding 'pybiotk/intervals/__init__.py'
2022-07-16T13:03:10,024   adding 'pybiotk/intervals/grange.py'
2022-07-16T13:03:10,026   adding 'pybiotk/intervals/merge_bed3.py'
2022-07-16T13:03:10,029   adding 'pybiotk/intervals/merge_intervals.py'
2022-07-16T13:03:10,032   adding 'pybiotk/io/__init__.py'
2022-07-16T13:03:10,036   adding 'pybiotk/io/bam.py'
2022-07-16T13:03:10,039   adding 'pybiotk/io/bed.py'
2022-07-16T13:03:10,042   adding 'pybiotk/io/bw.py'
2022-07-16T13:03:10,045   adding 'pybiotk/io/fasta.py'
2022-07-16T13:03:10,048   adding 'pybiotk/io/fastq.py'
2022-07-16T13:03:10,052   adding 'pybiotk/io/gtf.py'
2022-07-16T13:03:10,056   adding 'pybiotk/utils/__init__.py'
2022-07-16T13:03:10,059   adding 'pybiotk/utils/bam_random.py'
2022-07-16T13:03:10,061   adding 'pybiotk/utils/fasta_filter.py'
2022-07-16T13:03:10,064   adding 'pybiotk/utils/fastq_uniq.py'
2022-07-16T13:03:10,067   adding 'pybiotk/utils/fragment_size.py'
2022-07-16T13:03:10,069   adding 'pybiotk/utils/gtf_filter.py'
2022-07-16T13:03:10,072   adding 'pybiotk/utils/merge_row.py'
2022-07-16T13:03:10,075   adding 'pybiotk/utils/merge_subseq.py'
2022-07-16T13:03:10,078   adding 'pybiotk/utils/normalize.py'
2022-07-16T13:03:10,081   adding 'pybiotk/utils/pyanno.py'
2022-07-16T13:03:10,084   adding 'pybiotk/utils/read_tables.py'
2022-07-16T13:03:10,086   adding 'pybiotk/utils/reference_count.py'
2022-07-16T13:03:10,089   adding 'pybiotk/utils/rmats_filter.py'
2022-07-16T13:03:10,092   adding 'pybiotk/utils/seq_random.py'
2022-07-16T13:03:10,095   adding 'pybiotk/utils/subseq_analysis.py'
2022-07-16T13:03:10,098   adding 'pybiotk/utils/summary_log.py'
2022-07-16T13:03:10,102   adding 'pybiotk/utils/utils.py'
2022-07-16T13:03:10,107   adding 'pybiotk-1.0.4.data/scripts/diff_expr_DESeq2.R'
2022-07-16T13:03:10,111   adding 'pybiotk-1.0.4.data/scripts/diff_expr_edgeR.R'
2022-07-16T13:03:10,114   adding 'pybiotk-1.0.4.data/scripts/diff_expr_plot.R'
2022-07-16T13:03:10,116   adding 'pybiotk-1.0.4.data/scripts/fasta_len.sh'
2022-07-16T13:03:10,118   adding 'pybiotk-1.0.4.data/scripts/fasta_u2t.sh'
2022-07-16T13:03:10,120   adding 'pybiotk-1.0.4.data/scripts/fastq_len.sh'
2022-07-16T13:03:10,123   adding 'pybiotk-1.0.4.data/scripts/get_chrom_length.sh'
2022-07-16T13:03:10,125   adding 'pybiotk-1.0.4.data/scripts/gtfparser.sh'
2022-07-16T13:03:10,127   adding 'pybiotk-1.0.4.data/scripts/merge_subseq.sh'
2022-07-16T13:03:10,130   adding 'pybiotk-1.0.4.data/scripts/peak_anno.R'
2022-07-16T13:03:10,132   adding 'pybiotk-1.0.4.data/scripts/plot_FRiPs.R'
2022-07-16T13:03:10,135   adding 'pybiotk-1.0.4.data/scripts/plot_bar.R'
2022-07-16T13:03:10,138   adding 'pybiotk-1.0.4.data/scripts/plot_corr.R'
2022-07-16T13:03:10,140   adding 'pybiotk-1.0.4.data/scripts/plot_deeptools_fragmentsize.R'
2022-07-16T13:03:10,143   adding 'pybiotk-1.0.4.data/scripts/plot_hist.R'
2022-07-16T13:03:10,145   adding 'pybiotk-1.0.4.data/scripts/plot_peak_width.R'
2022-07-16T13:03:10,148   adding 'pybiotk-1.0.4.data/scripts/plot_rep_cor.R'
2022-07-16T13:03:10,151   adding 'pybiotk-1.0.4.data/scripts/plot_summary.R'
2022-07-16T13:03:10,154   adding 'pybiotk-1.0.4.data/scripts/plot_venn.R'
2022-07-16T13:03:10,156   adding 'pybiotk-1.0.4.data/scripts/remove_duplicates.sh'
2022-07-16T13:03:10,162   adding 'stream/__init__.py'
2022-07-16T13:03:10,166   adding 'stream/pipe.py'
2022-07-16T13:03:10,170   adding 'stream/stream.py'
2022-07-16T13:03:10,172   adding 'pybiotk-1.0.4.dist-info/LICENSE.txt'
2022-07-16T13:03:10,174   adding 'pybiotk-1.0.4.dist-info/METADATA'
2022-07-16T13:03:10,176   adding 'pybiotk-1.0.4.dist-info/WHEEL'
2022-07-16T13:03:10,178   adding 'pybiotk-1.0.4.dist-info/entry_points.txt'
2022-07-16T13:03:10,180   adding 'pybiotk-1.0.4.dist-info/top_level.txt'
2022-07-16T13:03:10,183   adding 'pybiotk-1.0.4.dist-info/RECORD'
2022-07-16T13:03:10,214   removing build/bdist.linux-armv7l/wheel
2022-07-16T13:03:10,610   Building wheel for pybiotk (pyproject.toml): finished with status 'done'
2022-07-16T13:03:10,655   Created wheel for pybiotk: filename=pybiotk-1.0.4-cp39-cp39-linux_armv7l.whl size=556079 sha256=50c81a26e08771be990869c49acd65b172ef531d807be2ef54cc44de12463f76
2022-07-16T13:03:10,657   Stored in directory: /tmp/pip-ephem-wheel-cache-myeeq115/wheels/77/1e/ec/2735ffeb2d5fc59492b4dd5c267745b755b0cccf77406af071
2022-07-16T13:03:10,688 Successfully built pybiotk
2022-07-16T13:03:10,735 Removed build tracker: '/tmp/pip-build-tracker-4w2xa4uq'