2022-07-19T00:54:12,282 Created temporary directory: /tmp/pip-ephem-wheel-cache-mnr08h3w 2022-07-19T00:54:12,288 Created temporary directory: /tmp/pip-build-tracker-n985kwgn 2022-07-19T00:54:12,289 Initialized build tracking at /tmp/pip-build-tracker-n985kwgn 2022-07-19T00:54:12,289 Created build tracker: /tmp/pip-build-tracker-n985kwgn 2022-07-19T00:54:12,289 Entered build tracker: /tmp/pip-build-tracker-n985kwgn 2022-07-19T00:54:12,290 Created temporary directory: /tmp/pip-wheel-es271b2p 2022-07-19T00:54:12,353 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-07-19T00:54:12,362 2 location(s) to search for versions of scrnatools: 2022-07-19T00:54:12,362 * https://pypi.org/simple/scrnatools/ 2022-07-19T00:54:12,362 * https://www.piwheels.org/simple/scrnatools/ 2022-07-19T00:54:12,363 Fetching project page and analyzing links: https://pypi.org/simple/scrnatools/ 2022-07-19T00:54:12,364 Getting page https://pypi.org/simple/scrnatools/ 2022-07-19T00:54:12,368 Found index url https://pypi.org/simple 2022-07-19T00:54:12,549 Found link https://files.pythonhosted.org/packages/f3/7c/08b64a3dbd3d2d1ec4c6e97375ab49ad92eb64e090931483da1b95f95eca/scrnatools-0.1.tar.gz#sha256=57517eb01af92f4d0112dc107852109a91a8bcac264b518b0fdf971fd0e51f04 (from https://pypi.org/simple/scrnatools/), version: 0.1 2022-07-19T00:54:12,550 Found link https://files.pythonhosted.org/packages/84/72/a94a5d6ce6c233aea560dd6f646e492dee498d34a5e77e252234f6089bac/scrnatools-0.2.tar.gz#sha256=9c537916ea3f9fb502057f5d786247c1482e252e375cbcdaab359b68c785805f (from https://pypi.org/simple/scrnatools/), version: 0.2 2022-07-19T00:54:12,551 Fetching project page and analyzing links: https://www.piwheels.org/simple/scrnatools/ 2022-07-19T00:54:12,552 Getting page https://www.piwheels.org/simple/scrnatools/ 2022-07-19T00:54:12,554 Found index url https://www.piwheels.org/simple 2022-07-19T00:54:12,777 Skipping link: No binaries permitted for scrnatools: https://www.piwheels.org/simple/scrnatools/scrnatools-0.1-py3-none-any.whl#sha256=b0127121f779c4c0acbbe73fe73e2e0948cd988ab03e8c674702286d945d8e61 (from https://www.piwheels.org/simple/scrnatools/) 2022-07-19T00:54:12,778 Skipping link: not a file: https://www.piwheels.org/simple/scrnatools/ 2022-07-19T00:54:12,779 Skipping link: not a file: https://pypi.org/simple/scrnatools/ 2022-07-19T00:54:12,812 Given no hashes to check 1 links for project 'scrnatools': discarding no candidates 2022-07-19T00:54:12,843 Collecting scrnatools==0.2 2022-07-19T00:54:12,847 Created temporary directory: /tmp/pip-unpack-32vi5aon 2022-07-19T00:54:13,341 Downloading scrnatools-0.2.tar.gz (16 kB) 2022-07-19T00:54:13,504 Added scrnatools==0.2 from https://files.pythonhosted.org/packages/84/72/a94a5d6ce6c233aea560dd6f646e492dee498d34a5e77e252234f6089bac/scrnatools-0.2.tar.gz#sha256=9c537916ea3f9fb502057f5d786247c1482e252e375cbcdaab359b68c785805f to build tracker '/tmp/pip-build-tracker-n985kwgn' 2022-07-19T00:54:13,507 Running setup.py (path:/tmp/pip-wheel-es271b2p/scrnatools_b7e24f8d65c4488d85ae9789f4067fe1/setup.py) egg_info for package scrnatools 2022-07-19T00:54:13,508 Created temporary directory: /tmp/pip-pip-egg-info-3cfypd8g 2022-07-19T00:54:13,509 Preparing metadata (setup.py): started 2022-07-19T00:54:13,511 Running command python setup.py egg_info 2022-07-19T00:54:19,568 running egg_info 2022-07-19T00:54:19,572 creating /tmp/pip-pip-egg-info-3cfypd8g/scrnatools.egg-info 2022-07-19T00:54:20,221 writing /tmp/pip-pip-egg-info-3cfypd8g/scrnatools.egg-info/PKG-INFO 2022-07-19T00:54:20,808 writing dependency_links to /tmp/pip-pip-egg-info-3cfypd8g/scrnatools.egg-info/dependency_links.txt 2022-07-19T00:54:23,730 writing requirements to /tmp/pip-pip-egg-info-3cfypd8g/scrnatools.egg-info/requires.txt 2022-07-19T00:54:24,315 writing top-level names to /tmp/pip-pip-egg-info-3cfypd8g/scrnatools.egg-info/top_level.txt 2022-07-19T00:54:24,318 writing manifest file '/tmp/pip-pip-egg-info-3cfypd8g/scrnatools.egg-info/SOURCES.txt' 2022-07-19T00:54:25,118 reading manifest file '/tmp/pip-pip-egg-info-3cfypd8g/scrnatools.egg-info/SOURCES.txt' 2022-07-19T00:54:25,121 adding license file 'LICENSE.txt' 2022-07-19T00:54:25,128 writing manifest file '/tmp/pip-pip-egg-info-3cfypd8g/scrnatools.egg-info/SOURCES.txt' 2022-07-19T00:54:25,129 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2022-07-19T00:54:25,130 % (opt, underscore_opt) 2022-07-19T00:54:25,346 Preparing metadata (setup.py): finished with status 'done' 2022-07-19T00:54:25,356 Source in /tmp/pip-wheel-es271b2p/scrnatools_b7e24f8d65c4488d85ae9789f4067fe1 has version 0.2, which satisfies requirement scrnatools==0.2 from https://files.pythonhosted.org/packages/84/72/a94a5d6ce6c233aea560dd6f646e492dee498d34a5e77e252234f6089bac/scrnatools-0.2.tar.gz#sha256=9c537916ea3f9fb502057f5d786247c1482e252e375cbcdaab359b68c785805f 2022-07-19T00:54:25,358 Removed scrnatools==0.2 from https://files.pythonhosted.org/packages/84/72/a94a5d6ce6c233aea560dd6f646e492dee498d34a5e77e252234f6089bac/scrnatools-0.2.tar.gz#sha256=9c537916ea3f9fb502057f5d786247c1482e252e375cbcdaab359b68c785805f from build tracker '/tmp/pip-build-tracker-n985kwgn' 2022-07-19T00:54:25,366 Created temporary directory: /tmp/pip-unpack-xo8k74f3 2022-07-19T00:54:25,368 Building wheels for collected packages: scrnatools 2022-07-19T00:54:25,377 Created temporary directory: /tmp/pip-wheel-cxib_z_d 2022-07-19T00:54:25,378 Building wheel for scrnatools (setup.py): started 2022-07-19T00:54:25,380 Destination directory: /tmp/pip-wheel-cxib_z_d 2022-07-19T00:54:25,380 Running command python setup.py bdist_wheel 2022-07-19T00:54:27,531 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2022-07-19T00:54:27,532 % (opt, underscore_opt) 2022-07-19T00:54:30,961 running bdist_wheel 2022-07-19T00:54:31,160 running build 2022-07-19T00:54:31,161 running build_py 2022-07-19T00:54:31,816 creating build 2022-07-19T00:54:31,817 creating build/lib 2022-07-19T00:54:31,818 creating build/lib/scrnatools 2022-07-19T00:54:31,821 copying scrnatools/__init__.py -> build/lib/scrnatools 2022-07-19T00:54:31,825 copying scrnatools/_configs.py -> build/lib/scrnatools 2022-07-19T00:54:31,831 creating build/lib/scrnatools/plotting 2022-07-19T00:54:31,834 copying scrnatools/plotting/_gene_tsne.py -> build/lib/scrnatools/plotting 2022-07-19T00:54:31,838 copying scrnatools/plotting/__init__.py -> build/lib/scrnatools/plotting 2022-07-19T00:54:31,842 copying scrnatools/plotting/_gene_umap.py -> build/lib/scrnatools/plotting 2022-07-19T00:54:31,847 copying scrnatools/plotting/_qc_plotting.py -> build/lib/scrnatools/plotting 2022-07-19T00:54:31,851 copying scrnatools/plotting/_gene_density_plot.py -> build/lib/scrnatools/plotting 2022-07-19T00:54:31,858 creating build/lib/scrnatools/_utils 2022-07-19T00:54:31,860 copying scrnatools/_utils/__init__.py -> build/lib/scrnatools/_utils 2022-07-19T00:54:31,865 copying scrnatools/_utils/_type_check.py -> build/lib/scrnatools/_utils 2022-07-19T00:54:31,869 copying scrnatools/_utils/_check_path.py -> build/lib/scrnatools/_utils 2022-07-19T00:54:31,873 copying scrnatools/_utils/_debug.py -> build/lib/scrnatools/_utils 2022-07-19T00:54:31,877 copying scrnatools/_utils/_fill_array.py -> build/lib/scrnatools/_utils 2022-07-19T00:54:31,883 creating build/lib/scrnatools/tools 2022-07-19T00:54:31,886 copying scrnatools/tools/_get_immgen_similarity_signatures.py -> build/lib/scrnatools/tools 2022-07-19T00:54:31,890 copying scrnatools/tools/__init__.py -> build/lib/scrnatools/tools 2022-07-19T00:54:31,895 copying scrnatools/tools/_create_cell_type_signature.py -> build/lib/scrnatools/tools 2022-07-19T00:54:31,899 copying scrnatools/tools/_cell_type_similarity.py -> build/lib/scrnatools/tools 2022-07-19T00:54:31,904 copying scrnatools/tools/_get_expression_matrix.py -> build/lib/scrnatools/tools 2022-07-19T00:54:31,908 copying scrnatools/tools/_log_density_ratio.py -> build/lib/scrnatools/tools 2022-07-19T00:54:31,912 copying scrnatools/tools/_cluster_de.py -> build/lib/scrnatools/tools 2022-07-19T00:54:31,918 creating build/lib/scrnatools/qc 2022-07-19T00:54:31,920 copying scrnatools/qc/__init__.py -> build/lib/scrnatools/qc 2022-07-19T00:54:31,925 copying scrnatools/qc/_filter_cells.py -> build/lib/scrnatools/qc 2022-07-19T00:54:31,930 copying scrnatools/qc/_scrublet.py -> build/lib/scrnatools/qc 2022-07-19T00:54:32,595 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-07-19T00:54:32,596 setuptools.SetuptoolsDeprecationWarning, 2022-07-19T00:54:33,250 installing to build/bdist.linux-armv7l/wheel 2022-07-19T00:54:33,251 running install 2022-07-19T00:54:33,313 running install_lib 2022-07-19T00:54:33,970 creating build/bdist.linux-armv7l 2022-07-19T00:54:33,971 creating build/bdist.linux-armv7l/wheel 2022-07-19T00:54:33,975 creating build/bdist.linux-armv7l/wheel/scrnatools 2022-07-19T00:54:33,979 creating build/bdist.linux-armv7l/wheel/scrnatools/plotting 2022-07-19T00:54:33,981 copying build/lib/scrnatools/plotting/_gene_tsne.py -> build/bdist.linux-armv7l/wheel/scrnatools/plotting 2022-07-19T00:54:33,986 copying build/lib/scrnatools/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/scrnatools/plotting 2022-07-19T00:54:33,990 copying build/lib/scrnatools/plotting/_gene_umap.py -> build/bdist.linux-armv7l/wheel/scrnatools/plotting 2022-07-19T00:54:33,994 copying build/lib/scrnatools/plotting/_qc_plotting.py -> build/bdist.linux-armv7l/wheel/scrnatools/plotting 2022-07-19T00:54:33,999 copying build/lib/scrnatools/plotting/_gene_density_plot.py -> build/bdist.linux-armv7l/wheel/scrnatools/plotting 2022-07-19T00:54:34,005 creating build/bdist.linux-armv7l/wheel/scrnatools/_utils 2022-07-19T00:54:34,007 copying build/lib/scrnatools/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/scrnatools/_utils 2022-07-19T00:54:34,011 copying build/lib/scrnatools/_utils/_type_check.py -> build/bdist.linux-armv7l/wheel/scrnatools/_utils 2022-07-19T00:54:34,014 copying build/lib/scrnatools/_utils/_check_path.py -> build/bdist.linux-armv7l/wheel/scrnatools/_utils 2022-07-19T00:54:34,018 copying build/lib/scrnatools/_utils/_debug.py -> build/bdist.linux-armv7l/wheel/scrnatools/_utils 2022-07-19T00:54:34,022 copying build/lib/scrnatools/_utils/_fill_array.py -> build/bdist.linux-armv7l/wheel/scrnatools/_utils 2022-07-19T00:54:34,026 copying build/lib/scrnatools/__init__.py -> build/bdist.linux-armv7l/wheel/scrnatools 2022-07-19T00:54:34,030 copying build/lib/scrnatools/_configs.py -> build/bdist.linux-armv7l/wheel/scrnatools 2022-07-19T00:54:34,035 creating build/bdist.linux-armv7l/wheel/scrnatools/tools 2022-07-19T00:54:34,037 copying build/lib/scrnatools/tools/_get_immgen_similarity_signatures.py -> build/bdist.linux-armv7l/wheel/scrnatools/tools 2022-07-19T00:54:34,041 copying build/lib/scrnatools/tools/__init__.py -> build/bdist.linux-armv7l/wheel/scrnatools/tools 2022-07-19T00:54:34,045 copying build/lib/scrnatools/tools/_create_cell_type_signature.py -> build/bdist.linux-armv7l/wheel/scrnatools/tools 2022-07-19T00:54:34,049 copying build/lib/scrnatools/tools/_cell_type_similarity.py -> build/bdist.linux-armv7l/wheel/scrnatools/tools 2022-07-19T00:54:34,054 copying build/lib/scrnatools/tools/_get_expression_matrix.py -> build/bdist.linux-armv7l/wheel/scrnatools/tools 2022-07-19T00:54:34,058 copying build/lib/scrnatools/tools/_log_density_ratio.py -> build/bdist.linux-armv7l/wheel/scrnatools/tools 2022-07-19T00:54:34,061 copying build/lib/scrnatools/tools/_cluster_de.py -> build/bdist.linux-armv7l/wheel/scrnatools/tools 2022-07-19T00:54:34,066 creating build/bdist.linux-armv7l/wheel/scrnatools/qc 2022-07-19T00:54:34,068 copying build/lib/scrnatools/qc/__init__.py -> build/bdist.linux-armv7l/wheel/scrnatools/qc 2022-07-19T00:54:34,072 copying build/lib/scrnatools/qc/_filter_cells.py -> build/bdist.linux-armv7l/wheel/scrnatools/qc 2022-07-19T00:54:34,076 copying build/lib/scrnatools/qc/_scrublet.py -> build/bdist.linux-armv7l/wheel/scrnatools/qc 2022-07-19T00:54:34,080 running install_egg_info 2022-07-19T00:54:35,419 running egg_info 2022-07-19T00:54:36,071 writing scrnatools.egg-info/PKG-INFO 2022-07-19T00:54:36,659 writing dependency_links to scrnatools.egg-info/dependency_links.txt 2022-07-19T00:54:39,593 writing requirements to scrnatools.egg-info/requires.txt 2022-07-19T00:54:40,183 writing top-level names to scrnatools.egg-info/top_level.txt 2022-07-19T00:54:40,262 reading manifest file 'scrnatools.egg-info/SOURCES.txt' 2022-07-19T00:54:40,268 adding license file 'LICENSE.txt' 2022-07-19T00:54:40,275 writing manifest file 'scrnatools.egg-info/SOURCES.txt' 2022-07-19T00:54:40,279 Copying scrnatools.egg-info to build/bdist.linux-armv7l/wheel/scrnatools-0.2-py3.7.egg-info 2022-07-19T00:54:40,301 running install_scripts 2022-07-19T00:54:40,520 adding license file "LICENSE.txt" (matched pattern "LICENSE.txt") 2022-07-19T00:54:40,527 creating build/bdist.linux-armv7l/wheel/scrnatools-0.2.dist-info/WHEEL 2022-07-19T00:54:40,532 creating '/tmp/pip-wheel-cxib_z_d/scrnatools-0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-07-19T00:54:40,537 adding 'scrnatools/__init__.py' 2022-07-19T00:54:40,541 adding 'scrnatools/_configs.py' 2022-07-19T00:54:40,546 adding 'scrnatools/_utils/__init__.py' 2022-07-19T00:54:40,548 adding 'scrnatools/_utils/_check_path.py' 2022-07-19T00:54:40,551 adding 'scrnatools/_utils/_debug.py' 2022-07-19T00:54:40,554 adding 'scrnatools/_utils/_fill_array.py' 2022-07-19T00:54:40,557 adding 'scrnatools/_utils/_type_check.py' 2022-07-19T00:54:40,561 adding 'scrnatools/plotting/__init__.py' 2022-07-19T00:54:40,565 adding 'scrnatools/plotting/_gene_density_plot.py' 2022-07-19T00:54:40,568 adding 'scrnatools/plotting/_gene_tsne.py' 2022-07-19T00:54:40,572 adding 'scrnatools/plotting/_gene_umap.py' 2022-07-19T00:54:40,575 adding 'scrnatools/plotting/_qc_plotting.py' 2022-07-19T00:54:40,579 adding 'scrnatools/qc/__init__.py' 2022-07-19T00:54:40,582 adding 'scrnatools/qc/_filter_cells.py' 2022-07-19T00:54:40,586 adding 'scrnatools/qc/_scrublet.py' 2022-07-19T00:54:40,590 adding 'scrnatools/tools/__init__.py' 2022-07-19T00:54:40,593 adding 'scrnatools/tools/_cell_type_similarity.py' 2022-07-19T00:54:40,597 adding 'scrnatools/tools/_cluster_de.py' 2022-07-19T00:54:40,600 adding 'scrnatools/tools/_create_cell_type_signature.py' 2022-07-19T00:54:40,603 adding 'scrnatools/tools/_get_expression_matrix.py' 2022-07-19T00:54:40,607 adding 'scrnatools/tools/_get_immgen_similarity_signatures.py' 2022-07-19T00:54:40,610 adding 'scrnatools/tools/_log_density_ratio.py' 2022-07-19T00:54:40,615 adding 'scrnatools-0.2.dist-info/LICENSE.txt' 2022-07-19T00:54:40,617 adding 'scrnatools-0.2.dist-info/METADATA' 2022-07-19T00:54:40,620 adding 'scrnatools-0.2.dist-info/WHEEL' 2022-07-19T00:54:40,622 adding 'scrnatools-0.2.dist-info/top_level.txt' 2022-07-19T00:54:40,624 adding 'scrnatools-0.2.dist-info/RECORD' 2022-07-19T00:54:40,628 removing build/bdist.linux-armv7l/wheel 2022-07-19T00:54:40,880 Building wheel for scrnatools (setup.py): finished with status 'done' 2022-07-19T00:54:40,887 Created wheel for scrnatools: filename=scrnatools-0.2-py3-none-any.whl size=25468 sha256=46685db5cd6fa31af4128354c2b2b789bf1c46a2c736b4b2420a3813ff64cc3a 2022-07-19T00:54:40,890 Stored in directory: /tmp/pip-ephem-wheel-cache-mnr08h3w/wheels/50/77/93/ec673b5ec9dd962a8466e69a56d87b98194ddb4da576b788bd 2022-07-19T00:54:40,912 Successfully built scrnatools 2022-07-19T00:54:40,921 Removed build tracker: '/tmp/pip-build-tracker-n985kwgn'