2022-07-19T08:45:53,628 Created temporary directory: /tmp/pip-ephem-wheel-cache-md78_rmf
2022-07-19T08:45:53,633 Created temporary directory: /tmp/pip-build-tracker-rwkvlycv
2022-07-19T08:45:53,634 Initialized build tracking at /tmp/pip-build-tracker-rwkvlycv
2022-07-19T08:45:53,635 Created build tracker: /tmp/pip-build-tracker-rwkvlycv
2022-07-19T08:45:53,635 Entered build tracker: /tmp/pip-build-tracker-rwkvlycv
2022-07-19T08:45:53,636 Created temporary directory: /tmp/pip-wheel-6fgnldu2
2022-07-19T08:45:53,700 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-07-19T08:45:53,708 2 location(s) to search for versions of ilus:
2022-07-19T08:45:53,708 * https://pypi.org/simple/ilus/
2022-07-19T08:45:53,708 * https://www.piwheels.org/simple/ilus/
2022-07-19T08:45:53,709 Fetching project page and analyzing links: https://pypi.org/simple/ilus/
2022-07-19T08:45:53,710 Getting page https://pypi.org/simple/ilus/
2022-07-19T08:45:53,714 Found index url https://pypi.org/simple
2022-07-19T08:45:53,908   Found link https://files.pythonhosted.org/packages/8e/55/649bd50aabb4f4b880b612986acaa44a19b692302b7a5a922def75599f5c/ilus-0.1.0.tar.gz#sha256=767a37912251f975aa58152f257c6e58fcc3e7a3bda060c85cda4f26b10a827f (from https://pypi.org/simple/ilus/), version: 0.1.0
2022-07-19T08:45:53,909   Found link https://files.pythonhosted.org/packages/64/d1/c750f25d5de6a9fc5a603feed5c7059c5c7f1aa6809fa9c58e1381be2ca2/ilus-1.0.0.tar.gz#sha256=bdb974377abaecf6074d1992de8f925bc67d95f4fdd0bf7aa47b23187f661ced (from https://pypi.org/simple/ilus/), version: 1.0.0
2022-07-19T08:45:53,910   Found link https://files.pythonhosted.org/packages/c8/bf/3716a026b6ebcb7028105356ac7922739ab7872a63eb43f7dfd886c5c5db/ilus-1.0.1.tar.gz#sha256=3fb04424d0f6cd75ad0dc7ffbbd8fead26054fc6c8bd04b8e90fc9799f23ce21 (from https://pypi.org/simple/ilus/), version: 1.0.1
2022-07-19T08:45:53,911   Found link https://files.pythonhosted.org/packages/33/4a/0974529431296c5238c63eb91442bbe1176b16f82ce971cf237dac4c8627/ilus-1.0.2.tar.gz#sha256=e80d3144c58fe3b341114dafe035c4d4826258a7d0c8a109cbd5dd780201f228 (from https://pypi.org/simple/ilus/), version: 1.0.2
2022-07-19T08:45:53,911   Found link https://files.pythonhosted.org/packages/5e/1b/630c5a16f2e4a5e5a4c28e15a20f787daf1e0b0472d1a3439f4d18fb4871/ilus-1.0.3.tar.gz#sha256=abe78bfca9a55ef26dc5b261ce5d24855d0c56b6f5d06d3603ca758a4a745e22 (from https://pypi.org/simple/ilus/), version: 1.0.3
2022-07-19T08:45:53,912   Found link https://files.pythonhosted.org/packages/7d/90/c6c93779518796a59e0022ea5177b93bf0552e83160e9d1e8fafe34dfdec/ilus-1.0.4.tar.gz#sha256=b58490f0a9f5b7f0b95c158b01da234e7c53a3a14dab6ffce1df44d9a68497cb (from https://pypi.org/simple/ilus/), version: 1.0.4
2022-07-19T08:45:53,913   Found link https://files.pythonhosted.org/packages/f2/91/43458918520aa40a030b566ce3596210a4d855a84e3d15ddaa01830a0e8d/ilus-1.1.0.tar.gz#sha256=6718f6974318107260fe6346af26ada4470cd5c0b567000086bfb2484c9d443c (from https://pypi.org/simple/ilus/), version: 1.1.0
2022-07-19T08:45:53,914   Found link https://files.pythonhosted.org/packages/ef/90/20e1da660596a5f39ff1da1bd0ba4a484bb229ace3bfc77b0169d1636acd/ilus-1.1.1.tar.gz#sha256=aca09f6f8d403a4fabeb5cf1b4b1533da853121cef460e209314e65edd26941b (from https://pypi.org/simple/ilus/), version: 1.1.1
2022-07-19T08:45:53,914   Found link https://files.pythonhosted.org/packages/0d/45/799c5f23cf1dedc8a7fa996f1d091a4d5e0f8b62eba461da5e60c50ad2eb/ilus-1.2.1.tar.gz#sha256=5c5e138e2db295603eb24951ba34b15514cca314987734024acbbb20af2a6cbb (from https://pypi.org/simple/ilus/), version: 1.2.1
2022-07-19T08:45:53,915 Fetching project page and analyzing links: https://www.piwheels.org/simple/ilus/
2022-07-19T08:45:53,916 Getting page https://www.piwheels.org/simple/ilus/
2022-07-19T08:45:53,918 Found index url https://www.piwheels.org/simple
2022-07-19T08:45:54,122   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.1.1-py3-none-any.whl#sha256=e6c1337f5257980949564552b79bff1f389200cf3ad322a5f849728263b321f4 (from https://www.piwheels.org/simple/ilus/)
2022-07-19T08:45:54,122   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.1.0-py3-none-any.whl#sha256=d696434a6d520599e55cead1b1aed46c68b4068394416117d1cadd7f36db6c7d (from https://www.piwheels.org/simple/ilus/)
2022-07-19T08:45:54,123   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.0.4-py3-none-any.whl#sha256=e882e54d1fda965bbe97cd5c70a977824f1d81e79091d8679ea47c84bdd167f6 (from https://www.piwheels.org/simple/ilus/)
2022-07-19T08:45:54,123   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.0.2-py3-none-any.whl#sha256=d390a4ba1fee50a6e7041c77c317907d02dc3a78aa4f6c43699ca60147b43161 (from https://www.piwheels.org/simple/ilus/)
2022-07-19T08:45:54,124   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.0.1-py3-none-any.whl#sha256=b1787a95b35aa0f798fa13b7407a034445b46252d3453354d569d03a9bd458ce (from https://www.piwheels.org/simple/ilus/)
2022-07-19T08:45:54,125   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.0.0-py3-none-any.whl#sha256=f6edd0ca8dd180f27744489a2d97500ea9bbf8a31d1fd67abd9eb7b33fc5e275 (from https://www.piwheels.org/simple/ilus/)
2022-07-19T08:45:54,125 Skipping link: not a file: https://www.piwheels.org/simple/ilus/
2022-07-19T08:45:54,126 Skipping link: not a file: https://pypi.org/simple/ilus/
2022-07-19T08:45:54,162 Given no hashes to check 1 links for project 'ilus': discarding no candidates
2022-07-19T08:45:54,193 Collecting ilus==1.2.1
2022-07-19T08:45:54,198   Created temporary directory: /tmp/pip-unpack-5hj8dsn_
2022-07-19T08:45:54,303   Downloading ilus-1.2.1.tar.gz (53 kB)
2022-07-19T08:45:54,491   Added ilus==1.2.1 from https://files.pythonhosted.org/packages/0d/45/799c5f23cf1dedc8a7fa996f1d091a4d5e0f8b62eba461da5e60c50ad2eb/ilus-1.2.1.tar.gz#sha256=5c5e138e2db295603eb24951ba34b15514cca314987734024acbbb20af2a6cbb to build tracker '/tmp/pip-build-tracker-rwkvlycv'
2022-07-19T08:45:54,494   Running setup.py (path:/tmp/pip-wheel-6fgnldu2/ilus_331c9034d6024038b6b1aae343e58888/setup.py) egg_info for package ilus
2022-07-19T08:45:54,496   Created temporary directory: /tmp/pip-pip-egg-info-mqwvs0vg
2022-07-19T08:45:54,496   Preparing metadata (setup.py): started
2022-07-19T08:45:54,498   Running command python setup.py egg_info
2022-07-19T08:46:01,604   running egg_info
2022-07-19T08:46:01,609   creating /tmp/pip-pip-egg-info-mqwvs0vg/ilus.egg-info
2022-07-19T08:46:02,261   writing /tmp/pip-pip-egg-info-mqwvs0vg/ilus.egg-info/PKG-INFO
2022-07-19T08:46:02,849   writing dependency_links to /tmp/pip-pip-egg-info-mqwvs0vg/ilus.egg-info/dependency_links.txt
2022-07-19T08:46:04,618   writing entry points to /tmp/pip-pip-egg-info-mqwvs0vg/ilus.egg-info/entry_points.txt
2022-07-19T08:46:05,782   writing requirements to /tmp/pip-pip-egg-info-mqwvs0vg/ilus.egg-info/requires.txt
2022-07-19T08:46:06,363   writing top-level names to /tmp/pip-pip-egg-info-mqwvs0vg/ilus.egg-info/top_level.txt
2022-07-19T08:46:06,366   writing manifest file '/tmp/pip-pip-egg-info-mqwvs0vg/ilus.egg-info/SOURCES.txt'
2022-07-19T08:46:07,135   reading manifest file '/tmp/pip-pip-egg-info-mqwvs0vg/ilus.egg-info/SOURCES.txt'
2022-07-19T08:46:07,139   adding license file 'LICENSE'
2022-07-19T08:46:07,145   writing manifest file '/tmp/pip-pip-egg-info-mqwvs0vg/ilus.egg-info/SOURCES.txt'
2022-07-19T08:46:07,363   Preparing metadata (setup.py): finished with status 'done'
2022-07-19T08:46:07,378   Source in /tmp/pip-wheel-6fgnldu2/ilus_331c9034d6024038b6b1aae343e58888 has version 1.2.1, which satisfies requirement ilus==1.2.1 from https://files.pythonhosted.org/packages/0d/45/799c5f23cf1dedc8a7fa996f1d091a4d5e0f8b62eba461da5e60c50ad2eb/ilus-1.2.1.tar.gz#sha256=5c5e138e2db295603eb24951ba34b15514cca314987734024acbbb20af2a6cbb
2022-07-19T08:46:07,380   Removed ilus==1.2.1 from https://files.pythonhosted.org/packages/0d/45/799c5f23cf1dedc8a7fa996f1d091a4d5e0f8b62eba461da5e60c50ad2eb/ilus-1.2.1.tar.gz#sha256=5c5e138e2db295603eb24951ba34b15514cca314987734024acbbb20af2a6cbb from build tracker '/tmp/pip-build-tracker-rwkvlycv'
2022-07-19T08:46:07,395 Created temporary directory: /tmp/pip-unpack-fzmm30y2
2022-07-19T08:46:07,396 Building wheels for collected packages: ilus
2022-07-19T08:46:07,405   Created temporary directory: /tmp/pip-wheel-5uv30es4
2022-07-19T08:46:07,406   Building wheel for ilus (setup.py): started
2022-07-19T08:46:07,408   Destination directory: /tmp/pip-wheel-5uv30es4
2022-07-19T08:46:07,408   Running command python setup.py bdist_wheel
2022-07-19T08:46:13,993   running bdist_wheel
2022-07-19T08:46:14,167   running build
2022-07-19T08:46:14,167   running build_py
2022-07-19T08:46:14,816   creating build
2022-07-19T08:46:14,817   creating build/lib
2022-07-19T08:46:14,818   creating build/lib/ilus
2022-07-19T08:46:14,820   copying ilus/__init__.py -> build/lib/ilus
2022-07-19T08:46:14,824   copying ilus/main.py -> build/lib/ilus
2022-07-19T08:46:14,828   copying ilus/utils.py -> build/lib/ilus
2022-07-19T08:46:14,834   creating build/lib/ilus/pipeline
2022-07-19T08:46:14,835   copying ilus/pipeline/__init__.py -> build/lib/ilus/pipeline
2022-07-19T08:46:14,839   copying ilus/pipeline/wgs.py -> build/lib/ilus/pipeline
2022-07-19T08:46:14,844   creating build/lib/ilus/modules
2022-07-19T08:46:14,846   copying ilus/modules/__init__.py -> build/lib/ilus/modules
2022-07-19T08:46:14,850   creating build/lib/ilus/launch
2022-07-19T08:46:14,852   copying ilus/launch/__init__.py -> build/lib/ilus/launch
2022-07-19T08:46:14,855   copying ilus/launch/runfunction.py -> build/lib/ilus/launch
2022-07-19T08:46:14,861   creating build/lib/ilus/modules/vcf
2022-07-19T08:46:14,863   copying ilus/modules/vcf/__init__.py -> build/lib/ilus/modules/vcf
2022-07-19T08:46:14,866   copying ilus/modules/vcf/bcftools.py -> build/lib/ilus/modules/vcf
2022-07-19T08:46:14,871   creating build/lib/ilus/modules/ngsaligner
2022-07-19T08:46:14,872   copying ilus/modules/ngsaligner/__init__.py -> build/lib/ilus/modules/ngsaligner
2022-07-19T08:46:14,875   copying ilus/modules/ngsaligner/bwa.py -> build/lib/ilus/modules/ngsaligner
2022-07-19T08:46:14,879   creating build/lib/ilus/modules/summary
2022-07-19T08:46:14,881   copying ilus/modules/summary/bam.py -> build/lib/ilus/modules/summary
2022-07-19T08:46:14,885   copying ilus/modules/summary/__init__.py -> build/lib/ilus/modules/summary
2022-07-19T08:46:14,889   creating build/lib/ilus/modules/variants
2022-07-19T08:46:14,890   copying ilus/modules/variants/gatk.py -> build/lib/ilus/modules/variants
2022-07-19T08:46:14,895   copying ilus/modules/variants/__init__.py -> build/lib/ilus/modules/variants
2022-07-19T08:46:14,897   running egg_info
2022-07-19T08:46:16,213   writing ilus.egg-info/PKG-INFO
2022-07-19T08:46:16,805   writing dependency_links to ilus.egg-info/dependency_links.txt
2022-07-19T08:46:18,572   writing entry points to ilus.egg-info/entry_points.txt
2022-07-19T08:46:19,750   writing requirements to ilus.egg-info/requires.txt
2022-07-19T08:46:20,344   writing top-level names to ilus.egg-info/top_level.txt
2022-07-19T08:46:20,413   reading manifest file 'ilus.egg-info/SOURCES.txt'
2022-07-19T08:46:20,418   adding license file 'LICENSE'
2022-07-19T08:46:20,424   writing manifest file 'ilus.egg-info/SOURCES.txt'
2022-07-19T08:46:21,087   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-07-19T08:46:21,088     setuptools.SetuptoolsDeprecationWarning,
2022-07-19T08:46:21,740   installing to build/bdist.linux-armv7l/wheel
2022-07-19T08:46:21,740   running install
2022-07-19T08:46:21,800   running install_lib
2022-07-19T08:46:22,448   creating build/bdist.linux-armv7l
2022-07-19T08:46:22,449   creating build/bdist.linux-armv7l/wheel
2022-07-19T08:46:22,452   creating build/bdist.linux-armv7l/wheel/ilus
2022-07-19T08:46:22,455   creating build/bdist.linux-armv7l/wheel/ilus/pipeline
2022-07-19T08:46:22,457   copying build/lib/ilus/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/pipeline
2022-07-19T08:46:22,460   copying build/lib/ilus/pipeline/wgs.py -> build/bdist.linux-armv7l/wheel/ilus/pipeline
2022-07-19T08:46:22,464   copying build/lib/ilus/__init__.py -> build/bdist.linux-armv7l/wheel/ilus
2022-07-19T08:46:22,468   creating build/bdist.linux-armv7l/wheel/ilus/modules
2022-07-19T08:46:22,469   copying build/lib/ilus/modules/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules
2022-07-19T08:46:22,474   creating build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2022-07-19T08:46:22,475   copying build/lib/ilus/modules/vcf/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2022-07-19T08:46:22,478   copying build/lib/ilus/modules/vcf/bcftools.py -> build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2022-07-19T08:46:22,482   creating build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2022-07-19T08:46:22,483   copying build/lib/ilus/modules/ngsaligner/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2022-07-19T08:46:22,486   copying build/lib/ilus/modules/ngsaligner/bwa.py -> build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2022-07-19T08:46:22,490   creating build/bdist.linux-armv7l/wheel/ilus/modules/summary
2022-07-19T08:46:22,491   copying build/lib/ilus/modules/summary/bam.py -> build/bdist.linux-armv7l/wheel/ilus/modules/summary
2022-07-19T08:46:22,495   copying build/lib/ilus/modules/summary/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/summary
2022-07-19T08:46:22,498   creating build/bdist.linux-armv7l/wheel/ilus/modules/variants
2022-07-19T08:46:22,500   copying build/lib/ilus/modules/variants/gatk.py -> build/bdist.linux-armv7l/wheel/ilus/modules/variants
2022-07-19T08:46:22,504   copying build/lib/ilus/modules/variants/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/variants
2022-07-19T08:46:22,507   copying build/lib/ilus/main.py -> build/bdist.linux-armv7l/wheel/ilus
2022-07-19T08:46:22,511   creating build/bdist.linux-armv7l/wheel/ilus/launch
2022-07-19T08:46:22,513   copying build/lib/ilus/launch/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/launch
2022-07-19T08:46:22,516   copying build/lib/ilus/launch/runfunction.py -> build/bdist.linux-armv7l/wheel/ilus/launch
2022-07-19T08:46:22,520   copying build/lib/ilus/utils.py -> build/bdist.linux-armv7l/wheel/ilus
2022-07-19T08:46:22,523   running install_egg_info
2022-07-19T08:46:23,176   Copying ilus.egg-info to build/bdist.linux-armv7l/wheel/ilus-1.2.1-py3.7.egg-info
2022-07-19T08:46:23,202   running install_scripts
2022-07-19T08:46:23,408   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-07-19T08:46:23,419   creating build/bdist.linux-armv7l/wheel/ilus-1.2.1.dist-info/WHEEL
2022-07-19T08:46:23,424   creating '/tmp/pip-wheel-5uv30es4/ilus-1.2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-07-19T08:46:23,429   adding 'ilus/__init__.py'
2022-07-19T08:46:23,432   adding 'ilus/main.py'
2022-07-19T08:46:23,435   adding 'ilus/utils.py'
2022-07-19T08:46:23,438   adding 'ilus/launch/__init__.py'
2022-07-19T08:46:23,442   adding 'ilus/launch/runfunction.py'
2022-07-19T08:46:23,446   adding 'ilus/modules/__init__.py'
2022-07-19T08:46:23,449   adding 'ilus/modules/ngsaligner/__init__.py'
2022-07-19T08:46:23,451   adding 'ilus/modules/ngsaligner/bwa.py'
2022-07-19T08:46:23,454   adding 'ilus/modules/summary/__init__.py'
2022-07-19T08:46:23,456   adding 'ilus/modules/summary/bam.py'
2022-07-19T08:46:23,459   adding 'ilus/modules/variants/__init__.py'
2022-07-19T08:46:23,463   adding 'ilus/modules/variants/gatk.py'
2022-07-19T08:46:23,466   adding 'ilus/modules/vcf/__init__.py'
2022-07-19T08:46:23,468   adding 'ilus/modules/vcf/bcftools.py'
2022-07-19T08:46:23,471   adding 'ilus/pipeline/__init__.py'
2022-07-19T08:46:23,474   adding 'ilus/pipeline/wgs.py'
2022-07-19T08:46:23,491   adding 'ilus-1.2.1.dist-info/LICENSE'
2022-07-19T08:46:23,501   adding 'ilus-1.2.1.dist-info/METADATA'
2022-07-19T08:46:23,504   adding 'ilus-1.2.1.dist-info/WHEEL'
2022-07-19T08:46:23,505   adding 'ilus-1.2.1.dist-info/entry_points.txt'
2022-07-19T08:46:23,507   adding 'ilus-1.2.1.dist-info/top_level.txt'
2022-07-19T08:46:23,508   adding 'ilus-1.2.1.dist-info/RECORD'
2022-07-19T08:46:23,512   removing build/bdist.linux-armv7l/wheel
2022-07-19T08:46:23,761   Building wheel for ilus (setup.py): finished with status 'done'
2022-07-19T08:46:23,769   Created wheel for ilus: filename=ilus-1.2.1-py3-none-any.whl size=38282 sha256=b35d6734ffaccb93bea222efb586b94c5e948e69b9410862e345c77db351eedb
2022-07-19T08:46:23,772   Stored in directory: /tmp/pip-ephem-wheel-cache-md78_rmf/wheels/9e/18/96/c255a7f1e57b41fa7b7970d898bdcbe1b3e98ffdae3dcca676
2022-07-19T08:46:23,804 Successfully built ilus
2022-07-19T08:46:23,814 Removed build tracker: '/tmp/pip-build-tracker-rwkvlycv'