2022-07-20T23:49:40,034 Created temporary directory: /tmp/pip-ephem-wheel-cache-sfxbtusm 2022-07-20T23:49:40,039 Created temporary directory: /tmp/pip-build-tracker-vur64s31 2022-07-20T23:49:40,040 Initialized build tracking at /tmp/pip-build-tracker-vur64s31 2022-07-20T23:49:40,040 Created build tracker: /tmp/pip-build-tracker-vur64s31 2022-07-20T23:49:40,041 Entered build tracker: /tmp/pip-build-tracker-vur64s31 2022-07-20T23:49:40,042 Created temporary directory: /tmp/pip-wheel-1oo1nync 2022-07-20T23:49:40,111 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-07-20T23:49:40,119 2 location(s) to search for versions of sigprofilerassignment: 2022-07-20T23:49:40,119 * https://pypi.org/simple/sigprofilerassignment/ 2022-07-20T23:49:40,119 * https://www.piwheels.org/simple/sigprofilerassignment/ 2022-07-20T23:49:40,120 Fetching project page and analyzing links: https://pypi.org/simple/sigprofilerassignment/ 2022-07-20T23:49:40,122 Getting page https://pypi.org/simple/sigprofilerassignment/ 2022-07-20T23:49:40,125 Found index url https://pypi.org/simple 2022-07-20T23:49:40,642 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/eb/80/f1205274c434ee073d26adb94743b425d82a6fbbb3d5445454139f8e095e/SigProfilerAssignment-0.0.2-py3-none-any.whl#sha256=141f2bfd742258df8931fa66a2886a7885c7ef75b7b40c556bc1e24f61c1711a (from https://pypi.org/simple/sigprofilerassignment/) 2022-07-20T23:49:40,643 Found link https://files.pythonhosted.org/packages/cd/7f/d5949b0e1a6099a309d6c3cf5e7da3eecc22fdab13d7fbccf91fc5455bbc/SigProfilerAssignment-0.0.2.tar.gz#sha256=566abc2759da994500316c98318750133d3df81713c58a633afd671437d928bf (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.2 2022-07-20T23:49:40,644 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/d4/0a/3ec44d6d52bb12aeed9b8190f3c556bf85bacdf54f26d8458eb80b184219/SigProfilerAssignment-0.0.3-py3-none-any.whl#sha256=176c153def37486569be43f8461f340983636d2fcdd72a13675b5b57b38d0e48 (from https://pypi.org/simple/sigprofilerassignment/) 2022-07-20T23:49:40,644 Found link https://files.pythonhosted.org/packages/bc/57/ce6cc7421edcd9dbc25fd065ada3876b40244852290c9cf852e6dd3e2180/SigProfilerAssignment-0.0.3.tar.gz#sha256=41c13bc373dab367c25f7915aba42e6ea02389062e676fcf3ea9f8854044b396 (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.3 2022-07-20T23:49:40,645 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/76/13/620a464927e43c92d18e9949938f6b41b14d7111cded624096a02d9b81cc/SigProfilerAssignment-0.0.4-py3-none-any.whl#sha256=fc5e8bcb0280adf95824e24f446bf17140c83fca666011ac7f048ac0c1c31e65 (from https://pypi.org/simple/sigprofilerassignment/) 2022-07-20T23:49:40,646 Found link https://files.pythonhosted.org/packages/8f/9e/8b7673ac9751acd9f82716b4299c155c2152bc26e32925bd5463d9c70800/SigProfilerAssignment-0.0.4.tar.gz#sha256=2625642379b2efea17031e091ff7f2f08549af03fc293e841f5c6a04ba34cf31 (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.4 2022-07-20T23:49:40,646 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/9d/56/1968aaf35ec8597df716ebb6c5cbca6a61892f8a293150f312985a500231/SigProfilerAssignment-0.0.5-py3-none-any.whl#sha256=f561bd7629702da4ac8646e561886ca546389296fbc37e78fc88285be7aec767 (from https://pypi.org/simple/sigprofilerassignment/) 2022-07-20T23:49:40,647 Found link https://files.pythonhosted.org/packages/79/c4/ed14da5d80f43e136c7638db1341dda950f510b9e283f3233a8aa7aabf32/SigProfilerAssignment-0.0.5.tar.gz#sha256=239afb0e763394c34e96cb7126e82704e2cde831992e641b3188bec341cd6cef (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.5 2022-07-20T23:49:40,648 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/66/ab/85f6ffb88701a726aa49666e007b52dbd3de21f036a6b8c2ebdeb9f1e462/SigProfilerAssignment-0.0.6-py3-none-any.whl#sha256=454159d43d895b745b66125f80584c6ad8a15e22f1299f372da50a52e80192bf (from https://pypi.org/simple/sigprofilerassignment/) 2022-07-20T23:49:40,648 Found link https://files.pythonhosted.org/packages/03/d8/b24045855eff43a91cf7756c96f110b790d103bd1df87f05c0986da04d0b/SigProfilerAssignment-0.0.6.tar.gz#sha256=0e7b54750127b9c00a90353c3abfc740193543ed124f7a26d40b25915acd0aaa (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.6 2022-07-20T23:49:40,649 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/7c/81/57fe9bf47f15fb98781753a9cd3b3614f09d5c53e359bde0b62d8ecc25eb/SigProfilerAssignment-0.0.7-py3-none-any.whl#sha256=b5be5cba42a3e350ea81d9c6f94671467810b6b113d165bedca153c1c4b19cfc (from https://pypi.org/simple/sigprofilerassignment/) 2022-07-20T23:49:40,650 Found link https://files.pythonhosted.org/packages/50/e5/0606e29d66a591712f8e43b9d2550f9d3c8a7c23b2720149f80424219418/SigProfilerAssignment-0.0.7.tar.gz#sha256=3866a0c871bb9b39184568336d7cc338a82e55f900b4ba2fb645a6487ee4045c (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.7 2022-07-20T23:49:40,650 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/b5/e6/bf7281f0f954a6108054031ca43038d77c11074c97615710dfe0d6153edb/SigProfilerAssignment-0.0.8-py3-none-any.whl#sha256=8925b5647e80a32fdef877b6065d929a97ab348b7cbaaec502262ee2a5b2c8aa (from https://pypi.org/simple/sigprofilerassignment/) 2022-07-20T23:49:40,651 Found link https://files.pythonhosted.org/packages/dd/2f/b1f51b32baa819c71f8f872cf621fa6a3b60c7bb151f19b2afee6acf89a2/SigProfilerAssignment-0.0.8.tar.gz#sha256=cdc6962e00396fedb153e494af491afb7d3e2412f499c23cc27299648eb7f96f (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.8 2022-07-20T23:49:40,652 Fetching project page and analyzing links: https://www.piwheels.org/simple/sigprofilerassignment/ 2022-07-20T23:49:40,653 Getting page https://www.piwheels.org/simple/sigprofilerassignment/ 2022-07-20T23:49:40,655 Found index url https://www.piwheels.org/simple 2022-07-20T23:49:40,931 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.7-py3-none-any.whl#sha256=6db83fcf7669f563330e9c8b69ef89320b6bee775bb5b7c13f6fa480b75c6c6e (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-07-20T23:49:40,931 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.6-py3-none-any.whl#sha256=3c24df444dbc2dca805d2ad2027411960b6c5d16edef5752b8cce431600f7bd4 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-07-20T23:49:40,932 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.5-py3-none-any.whl#sha256=8dcda60a710617760d56dff2ae80b5a534397648f276af1399674bad57c9fb12 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-07-20T23:49:40,933 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.4-py3-none-any.whl#sha256=dfd3c27005fbbcd5ec1c7991f5b1e8904b2ce17d5bdd55291c2ea9132a6eadbe (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-07-20T23:49:40,933 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.3-py3-none-any.whl#sha256=8b18bba4e61a6040884d0cddd9c4547a5bfe85135968d4416016dccc5d165d28 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-07-20T23:49:40,934 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.2-py3-none-any.whl#sha256=6b7c937475ced548e412ca91f1beb750ce7d02abc32ad0a1e1d985353c562bae (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-07-20T23:49:40,934 Skipping link: not a file: https://www.piwheels.org/simple/sigprofilerassignment/ 2022-07-20T23:49:40,935 Skipping link: not a file: https://pypi.org/simple/sigprofilerassignment/ 2022-07-20T23:49:40,973 Given no hashes to check 1 links for project 'sigprofilerassignment': discarding no candidates 2022-07-20T23:49:41,016 Collecting sigprofilerassignment==0.0.8 2022-07-20T23:49:41,020 Created temporary directory: /tmp/pip-unpack-v2vtgd1j 2022-07-20T23:49:42,170 Downloading SigProfilerAssignment-0.0.8.tar.gz (3.7 MB) 2022-07-20T23:49:44,708 Added sigprofilerassignment==0.0.8 from https://files.pythonhosted.org/packages/dd/2f/b1f51b32baa819c71f8f872cf621fa6a3b60c7bb151f19b2afee6acf89a2/SigProfilerAssignment-0.0.8.tar.gz#sha256=cdc6962e00396fedb153e494af491afb7d3e2412f499c23cc27299648eb7f96f to build tracker '/tmp/pip-build-tracker-vur64s31' 2022-07-20T23:49:44,712 Running setup.py (path:/tmp/pip-wheel-1oo1nync/sigprofilerassignment_74ee4e3231be4ed0bfb1ae43857c43eb/setup.py) egg_info for package sigprofilerassignment 2022-07-20T23:49:44,713 Created temporary directory: /tmp/pip-pip-egg-info-0o58q5gc 2022-07-20T23:49:44,713 Preparing metadata (setup.py): started 2022-07-20T23:49:44,715 Running command python setup.py egg_info 2022-07-20T23:49:53,304 running egg_info 2022-07-20T23:49:53,309 creating /tmp/pip-pip-egg-info-0o58q5gc/SigProfilerAssignment.egg-info 2022-07-20T23:49:54,035 writing /tmp/pip-pip-egg-info-0o58q5gc/SigProfilerAssignment.egg-info/PKG-INFO 2022-07-20T23:49:54,632 writing dependency_links to /tmp/pip-pip-egg-info-0o58q5gc/SigProfilerAssignment.egg-info/dependency_links.txt 2022-07-20T23:49:57,625 writing requirements to /tmp/pip-pip-egg-info-0o58q5gc/SigProfilerAssignment.egg-info/requires.txt 2022-07-20T23:49:58,224 writing top-level names to /tmp/pip-pip-egg-info-0o58q5gc/SigProfilerAssignment.egg-info/top_level.txt 2022-07-20T23:49:58,235 writing manifest file '/tmp/pip-pip-egg-info-0o58q5gc/SigProfilerAssignment.egg-info/SOURCES.txt' 2022-07-20T23:49:59,275 reading manifest file '/tmp/pip-pip-egg-info-0o58q5gc/SigProfilerAssignment.egg-info/SOURCES.txt' 2022-07-20T23:49:59,278 reading manifest template 'MANIFEST.in' 2022-07-20T23:49:59,303 adding license file 'LICENSE.txt' 2022-07-20T23:49:59,317 writing manifest file '/tmp/pip-pip-egg-info-0o58q5gc/SigProfilerAssignment.egg-info/SOURCES.txt' 2022-07-20T23:49:59,541 Preparing metadata (setup.py): finished with status 'done' 2022-07-20T23:49:59,553 Source in /tmp/pip-wheel-1oo1nync/sigprofilerassignment_74ee4e3231be4ed0bfb1ae43857c43eb has version 0.0.8, which satisfies requirement sigprofilerassignment==0.0.8 from https://files.pythonhosted.org/packages/dd/2f/b1f51b32baa819c71f8f872cf621fa6a3b60c7bb151f19b2afee6acf89a2/SigProfilerAssignment-0.0.8.tar.gz#sha256=cdc6962e00396fedb153e494af491afb7d3e2412f499c23cc27299648eb7f96f 2022-07-20T23:49:59,555 Removed sigprofilerassignment==0.0.8 from https://files.pythonhosted.org/packages/dd/2f/b1f51b32baa819c71f8f872cf621fa6a3b60c7bb151f19b2afee6acf89a2/SigProfilerAssignment-0.0.8.tar.gz#sha256=cdc6962e00396fedb153e494af491afb7d3e2412f499c23cc27299648eb7f96f from build tracker '/tmp/pip-build-tracker-vur64s31' 2022-07-20T23:49:59,564 Created temporary directory: /tmp/pip-unpack-_r2gkygf 2022-07-20T23:49:59,565 Building wheels for collected packages: sigprofilerassignment 2022-07-20T23:49:59,574 Created temporary directory: /tmp/pip-wheel-g405et5q 2022-07-20T23:49:59,575 Building wheel for sigprofilerassignment (setup.py): started 2022-07-20T23:49:59,577 Destination directory: /tmp/pip-wheel-g405et5q 2022-07-20T23:49:59,577 Running command python setup.py bdist_wheel 2022-07-20T23:50:07,683 running bdist_wheel 2022-07-20T23:50:08,146 running build 2022-07-20T23:50:08,146 running build_py 2022-07-20T23:50:08,985 creating build 2022-07-20T23:50:08,986 creating build/lib 2022-07-20T23:50:08,987 creating build/lib/SigProfilerAssignment 2022-07-20T23:50:08,990 copying SigProfilerAssignment/decompose_sub_routines.py -> build/lib/SigProfilerAssignment 2022-07-20T23:50:08,998 copying SigProfilerAssignment/__init__.py -> build/lib/SigProfilerAssignment 2022-07-20T23:50:09,001 copying SigProfilerAssignment/decomposition.py -> build/lib/SigProfilerAssignment 2022-07-20T23:50:09,006 copying SigProfilerAssignment/Analyzer.py -> build/lib/SigProfilerAssignment 2022-07-20T23:50:09,010 copying SigProfilerAssignment/version.py -> build/lib/SigProfilerAssignment 2022-07-20T23:50:09,013 copying SigProfilerAssignment/single_sample.py -> build/lib/SigProfilerAssignment 2022-07-20T23:50:09,018 running egg_info 2022-07-20T23:50:10,508 writing SigProfilerAssignment.egg-info/PKG-INFO 2022-07-20T23:50:11,130 writing dependency_links to SigProfilerAssignment.egg-info/dependency_links.txt 2022-07-20T23:50:14,102 writing requirements to SigProfilerAssignment.egg-info/requires.txt 2022-07-20T23:50:14,692 writing top-level names to SigProfilerAssignment.egg-info/top_level.txt 2022-07-20T23:50:14,827 reading manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2022-07-20T23:50:14,866 reading manifest template 'MANIFEST.in' 2022-07-20T23:50:14,885 adding license file 'LICENSE.txt' 2022-07-20T23:50:14,905 writing manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2022-07-20T23:50:14,911 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-07-20T23:50:14,912 ############################ 2022-07-20T23:50:14,912 # Package would be ignored # 2022-07-20T23:50:14,912 ############################ 2022-07-20T23:50:14,913 Python recognizes 'SigProfilerAssignment.data' as an importable package, however it is 2022-07-20T23:50:14,913 included in the distribution as "data". 2022-07-20T23:50:14,913 This behavior is likely to change in future versions of setuptools (and 2022-07-20T23:50:14,914 therefore is considered deprecated). 2022-07-20T23:50:14,914 Please make sure that 'SigProfilerAssignment.data' is included as a package by using 2022-07-20T23:50:14,914 setuptools' `packages` configuration field or the proper discovery methods. 2022-07-20T23:50:14,915 You can read more about "package discovery" and "data files" on setuptools 2022-07-20T23:50:14,915 documentation page. 2022-07-20T23:50:14,916 !! 2022-07-20T23:50:14,917 check.warn(importable) 2022-07-20T23:50:14,920 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-07-20T23:50:14,921 ############################ 2022-07-20T23:50:14,921 # Package would be ignored # 2022-07-20T23:50:14,921 ############################ 2022-07-20T23:50:14,921 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as an importable package, however it is 2022-07-20T23:50:14,922 included in the distribution as "data". 2022-07-20T23:50:14,922 This behavior is likely to change in future versions of setuptools (and 2022-07-20T23:50:14,922 therefore is considered deprecated). 2022-07-20T23:50:14,923 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is included as a package by using 2022-07-20T23:50:14,923 setuptools' `packages` configuration field or the proper discovery methods. 2022-07-20T23:50:14,924 You can read more about "package discovery" and "data files" on setuptools 2022-07-20T23:50:14,924 documentation page. 2022-07-20T23:50:14,925 !! 2022-07-20T23:50:14,926 check.warn(importable) 2022-07-20T23:50:14,926 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-07-20T23:50:14,927 ############################ 2022-07-20T23:50:14,927 # Package would be ignored # 2022-07-20T23:50:14,927 ############################ 2022-07-20T23:50:14,928 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as an importable package, however it is 2022-07-20T23:50:14,928 included in the distribution as "data". 2022-07-20T23:50:14,928 This behavior is likely to change in future versions of setuptools (and 2022-07-20T23:50:14,929 therefore is considered deprecated). 2022-07-20T23:50:14,929 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is included as a package by using 2022-07-20T23:50:14,930 setuptools' `packages` configuration field or the proper discovery methods. 2022-07-20T23:50:14,930 You can read more about "package discovery" and "data files" on setuptools 2022-07-20T23:50:14,931 documentation page. 2022-07-20T23:50:14,932 !! 2022-07-20T23:50:14,932 check.warn(importable) 2022-07-20T23:50:14,933 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-07-20T23:50:14,933 ############################ 2022-07-20T23:50:14,934 # Package would be ignored # 2022-07-20T23:50:14,934 ############################ 2022-07-20T23:50:14,934 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm10' as an importable package, however it is 2022-07-20T23:50:14,935 included in the distribution as "data". 2022-07-20T23:50:14,935 This behavior is likely to change in future versions of setuptools (and 2022-07-20T23:50:14,935 therefore is considered deprecated). 2022-07-20T23:50:14,936 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm10' is included as a package by using 2022-07-20T23:50:14,936 setuptools' `packages` configuration field or the proper discovery methods. 2022-07-20T23:50:14,937 You can read more about "package discovery" and "data files" on setuptools 2022-07-20T23:50:14,937 documentation page. 2022-07-20T23:50:14,938 !! 2022-07-20T23:50:14,938 check.warn(importable) 2022-07-20T23:50:14,939 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-07-20T23:50:14,939 ############################ 2022-07-20T23:50:14,940 # Package would be ignored # 2022-07-20T23:50:14,940 ############################ 2022-07-20T23:50:14,940 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm9' as an importable package, however it is 2022-07-20T23:50:14,941 included in the distribution as "data". 2022-07-20T23:50:14,941 This behavior is likely to change in future versions of setuptools (and 2022-07-20T23:50:14,941 therefore is considered deprecated). 2022-07-20T23:50:14,942 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm9' is included as a package by using 2022-07-20T23:50:14,942 setuptools' `packages` configuration field or the proper discovery methods. 2022-07-20T23:50:14,943 You can read more about "package discovery" and "data files" on setuptools 2022-07-20T23:50:14,943 documentation page. 2022-07-20T23:50:14,944 !! 2022-07-20T23:50:14,944 check.warn(importable) 2022-07-20T23:50:14,945 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-07-20T23:50:14,946 ############################ 2022-07-20T23:50:14,946 # Package would be ignored # 2022-07-20T23:50:14,946 ############################ 2022-07-20T23:50:14,946 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.rn6' as an importable package, however it is 2022-07-20T23:50:14,947 included in the distribution as "data". 2022-07-20T23:50:14,947 This behavior is likely to change in future versions of setuptools (and 2022-07-20T23:50:14,947 therefore is considered deprecated). 2022-07-20T23:50:14,948 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.rn6' is included as a package by using 2022-07-20T23:50:14,948 setuptools' `packages` configuration field or the proper discovery methods. 2022-07-20T23:50:14,949 You can read more about "package discovery" and "data files" on setuptools 2022-07-20T23:50:14,949 documentation page. 2022-07-20T23:50:14,950 !! 2022-07-20T23:50:14,951 check.warn(importable) 2022-07-20T23:50:14,951 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-07-20T23:50:14,952 ############################ 2022-07-20T23:50:14,952 # Package would be ignored # 2022-07-20T23:50:14,952 ############################ 2022-07-20T23:50:14,953 Python recognizes 'SigProfilerAssignment.data.vcftest' as an importable package, however it is 2022-07-20T23:50:14,953 included in the distribution as "data". 2022-07-20T23:50:14,953 This behavior is likely to change in future versions of setuptools (and 2022-07-20T23:50:14,953 therefore is considered deprecated). 2022-07-20T23:50:14,954 Please make sure that 'SigProfilerAssignment.data.vcftest' is included as a package by using 2022-07-20T23:50:14,954 setuptools' `packages` configuration field or the proper discovery methods. 2022-07-20T23:50:14,955 You can read more about "package discovery" and "data files" on setuptools 2022-07-20T23:50:14,955 documentation page. 2022-07-20T23:50:14,956 !! 2022-07-20T23:50:14,956 check.warn(importable) 2022-07-20T23:50:14,957 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-07-20T23:50:14,958 ############################ 2022-07-20T23:50:14,958 # Package would be ignored # 2022-07-20T23:50:14,958 ############################ 2022-07-20T23:50:14,958 Python recognizes 'SigProfilerAssignment.src' as an importable package, however it is 2022-07-20T23:50:14,959 included in the distribution as "data". 2022-07-20T23:50:14,959 This behavior is likely to change in future versions of setuptools (and 2022-07-20T23:50:14,959 therefore is considered deprecated). 2022-07-20T23:50:14,960 Please make sure that 'SigProfilerAssignment.src' is included as a package by using 2022-07-20T23:50:14,960 setuptools' `packages` configuration field or the proper discovery methods. 2022-07-20T23:50:14,961 You can read more about "package discovery" and "data files" on setuptools 2022-07-20T23:50:14,961 documentation page. 2022-07-20T23:50:14,962 !! 2022-07-20T23:50:14,962 check.warn(importable) 2022-07-20T23:50:14,963 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-07-20T23:50:14,964 ############################ 2022-07-20T23:50:14,964 # Package would be ignored # 2022-07-20T23:50:14,964 ############################ 2022-07-20T23:50:14,964 Python recognizes 'SigProfilerAssignment.src.Fonts' as an importable package, however it is 2022-07-20T23:50:14,965 included in the distribution as "data". 2022-07-20T23:50:14,965 This behavior is likely to change in future versions of setuptools (and 2022-07-20T23:50:14,965 therefore is considered deprecated). 2022-07-20T23:50:14,966 Please make sure that 'SigProfilerAssignment.src.Fonts' is included as a package by using 2022-07-20T23:50:14,966 setuptools' `packages` configuration field or the proper discovery methods. 2022-07-20T23:50:14,967 You can read more about "package discovery" and "data files" on setuptools 2022-07-20T23:50:14,967 documentation page. 2022-07-20T23:50:14,968 !! 2022-07-20T23:50:14,969 check.warn(importable) 2022-07-20T23:50:14,969 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-07-20T23:50:14,970 ############################ 2022-07-20T23:50:14,970 # Package would be ignored # 2022-07-20T23:50:14,971 ############################ 2022-07-20T23:50:14,971 Python recognizes 'SigProfilerAssignment.src.FormatFiles' as an importable package, however it is 2022-07-20T23:50:14,971 included in the distribution as "data". 2022-07-20T23:50:14,972 This behavior is likely to change in future versions of setuptools (and 2022-07-20T23:50:14,972 therefore is considered deprecated). 2022-07-20T23:50:14,973 Please make sure that 'SigProfilerAssignment.src.FormatFiles' is included as a package by using 2022-07-20T23:50:14,973 setuptools' `packages` configuration field or the proper discovery methods. 2022-07-20T23:50:14,974 You can read more about "package discovery" and "data files" on setuptools 2022-07-20T23:50:14,974 documentation page. 2022-07-20T23:50:14,975 !! 2022-07-20T23:50:14,976 check.warn(importable) 2022-07-20T23:50:14,976 creating build/lib/SigProfilerAssignment/data 2022-07-20T23:50:14,976 copying SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/lib/SigProfilerAssignment/data 2022-07-20T23:50:14,977 copying SigProfilerAssignment/data/Accolade_fermante.png -> build/lib/SigProfilerAssignment/data 2022-07-20T23:50:14,977 copying SigProfilerAssignment/data/CNV_features.tsv -> build/lib/SigProfilerAssignment/data 2022-07-20T23:50:14,980 copying SigProfilerAssignment/data/CNV_signatures.txt -> build/lib/SigProfilerAssignment/data 2022-07-20T23:50:14,985 copying SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/lib/SigProfilerAssignment/data 2022-07-20T23:50:14,988 copying SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2022-07-20T23:50:15,000 copying SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2022-07-20T23:50:15,024 copying SigProfilerAssignment/data/Samples.txt -> build/lib/SigProfilerAssignment/data 2022-07-20T23:50:15,029 copying SigProfilerAssignment/data/csvexample.csv -> build/lib/SigProfilerAssignment/data 2022-07-20T23:50:15,033 copying SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/lib/SigProfilerAssignment/data 2022-07-20T23:50:15,038 copying SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/lib/SigProfilerAssignment/data 2022-07-20T23:50:15,043 copying SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/lib/SigProfilerAssignment/data 2022-07-20T23:50:15,051 creating build/lib/SigProfilerAssignment/data/Reference_Signatures 2022-07-20T23:50:15,051 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:15,053 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:15,058 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:15,065 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:15,070 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:15,075 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:15,087 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:15,092 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:15,098 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:15,109 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:15,121 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:15,126 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:15,132 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:15,138 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:15,151 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:15,157 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:15,164 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:15,175 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:15,177 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:15,185 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:15,193 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:15,198 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:15,212 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:15,217 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:15,229 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:15,234 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:15,246 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:15,252 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:15,263 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:15,265 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:15,271 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:15,278 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:15,283 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:15,294 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:15,299 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:15,311 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:15,316 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:15,328 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:15,334 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:15,344 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:15,346 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:15,352 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:15,360 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:15,365 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:15,377 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:15,383 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:15,397 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:15,403 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:15,415 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:15,421 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:15,433 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:15,435 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:15,442 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:15,449 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:15,455 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:15,466 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:15,473 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:15,485 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:15,492 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:15,504 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:15,510 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:15,521 creating build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,523 copying SigProfilerAssignment/data/vcftest/PD3851a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,531 copying SigProfilerAssignment/data/vcftest/PD3890a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,543 copying SigProfilerAssignment/data/vcftest/PD3904a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,553 copying SigProfilerAssignment/data/vcftest/PD3905a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,562 copying SigProfilerAssignment/data/vcftest/PD3945a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,577 copying SigProfilerAssignment/data/vcftest/PD4005a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,588 copying SigProfilerAssignment/data/vcftest/PD4006a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,603 copying SigProfilerAssignment/data/vcftest/PD4085a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,612 copying SigProfilerAssignment/data/vcftest/PD4086a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,619 copying SigProfilerAssignment/data/vcftest/PD4088a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,625 copying SigProfilerAssignment/data/vcftest/PD4103a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,634 copying SigProfilerAssignment/data/vcftest/PD4107a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,649 copying SigProfilerAssignment/data/vcftest/PD4109a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,666 copying SigProfilerAssignment/data/vcftest/PD4115a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,680 copying SigProfilerAssignment/data/vcftest/PD4116a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,695 copying SigProfilerAssignment/data/vcftest/PD4120a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,780 copying SigProfilerAssignment/data/vcftest/PD4192a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,789 copying SigProfilerAssignment/data/vcftest/PD4194a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,794 copying SigProfilerAssignment/data/vcftest/PD4198a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,804 copying SigProfilerAssignment/data/vcftest/PD4199a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,816 copying SigProfilerAssignment/data/vcftest/PD4248a.vcf -> build/lib/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:15,824 creating build/lib/SigProfilerAssignment/src 2022-07-20T23:50:15,825 copying SigProfilerAssignment/src/Accolade_fermante.png -> build/lib/SigProfilerAssignment/src 2022-07-20T23:50:15,856 copying SigProfilerAssignment/src/CREDIT.md -> build/lib/SigProfilerAssignment/src 2022-07-20T23:50:15,859 creating build/lib/SigProfilerAssignment/src/Fonts 2022-07-20T23:50:15,861 copying SigProfilerAssignment/src/Fonts/Arial Bold.ttf -> build/lib/SigProfilerAssignment/src/Fonts 2022-07-20T23:50:15,902 creating build/lib/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:15,904 copying SigProfilerAssignment/src/FormatFiles/Sample_Files.DBS1248.all -> build/lib/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:15,909 copying SigProfilerAssignment/src/FormatFiles/Sample_Files.DBS186.all -> build/lib/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:15,913 copying SigProfilerAssignment/src/FormatFiles/Sample_Files.DBS2976.all -> build/lib/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:15,918 copying SigProfilerAssignment/src/FormatFiles/Sample_Files.DBS78.all -> build/lib/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:15,922 copying SigProfilerAssignment/src/FormatFiles/Sample_Files.ID28.all -> build/lib/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:15,926 copying SigProfilerAssignment/src/FormatFiles/Sample_Files.ID415.all -> build/lib/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:15,930 copying SigProfilerAssignment/src/FormatFiles/Sample_Files.ID83.all -> build/lib/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:15,934 copying SigProfilerAssignment/src/FormatFiles/Sample_Files.SBS1536.all -> build/lib/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:15,939 copying SigProfilerAssignment/src/FormatFiles/Sample_Files.SBS24.all -> build/lib/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:15,942 copying SigProfilerAssignment/src/FormatFiles/Sample_Files.SBS384.all -> build/lib/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:15,947 copying SigProfilerAssignment/src/FormatFiles/Sample_Files.SBS6.all -> build/lib/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:15,951 copying SigProfilerAssignment/src/FormatFiles/Sample_Files.SBS6144.all -> build/lib/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:15,960 copying SigProfilerAssignment/src/FormatFiles/Sample_Files.SBS96.all -> build/lib/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:16,705 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-07-20T23:50:16,705 setuptools.SetuptoolsDeprecationWarning, 2022-07-20T23:50:17,459 installing to build/bdist.linux-armv7l/wheel 2022-07-20T23:50:17,460 running install 2022-07-20T23:50:17,522 running install_lib 2022-07-20T23:50:18,242 creating build/bdist.linux-armv7l 2022-07-20T23:50:18,243 creating build/bdist.linux-armv7l/wheel 2022-07-20T23:50:18,246 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-07-20T23:50:18,247 copying build/lib/SigProfilerAssignment/decompose_sub_routines.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-07-20T23:50:18,255 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/src 2022-07-20T23:50:18,257 copying build/lib/SigProfilerAssignment/src/Accolade_fermante.png -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/src 2022-07-20T23:50:18,262 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/src/Fonts 2022-07-20T23:50:18,263 copying build/lib/SigProfilerAssignment/src/Fonts/Arial Bold.ttf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/src/Fonts 2022-07-20T23:50:18,304 copying build/lib/SigProfilerAssignment/src/CREDIT.md -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/src 2022-07-20T23:50:18,308 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:18,310 copying build/lib/SigProfilerAssignment/src/FormatFiles/Sample_Files.ID28.all -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:18,313 copying build/lib/SigProfilerAssignment/src/FormatFiles/Sample_Files.ID415.all -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:18,317 copying build/lib/SigProfilerAssignment/src/FormatFiles/Sample_Files.SBS6144.all -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:18,333 copying build/lib/SigProfilerAssignment/src/FormatFiles/Sample_Files.DBS186.all -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:18,337 copying build/lib/SigProfilerAssignment/src/FormatFiles/Sample_Files.SBS96.all -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:18,340 copying build/lib/SigProfilerAssignment/src/FormatFiles/Sample_Files.SBS24.all -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:18,343 copying build/lib/SigProfilerAssignment/src/FormatFiles/Sample_Files.DBS2976.all -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:18,349 copying build/lib/SigProfilerAssignment/src/FormatFiles/Sample_Files.SBS6.all -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:18,352 copying build/lib/SigProfilerAssignment/src/FormatFiles/Sample_Files.SBS1536.all -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:18,357 copying build/lib/SigProfilerAssignment/src/FormatFiles/Sample_Files.ID83.all -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:18,360 copying build/lib/SigProfilerAssignment/src/FormatFiles/Sample_Files.DBS78.all -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:18,363 copying build/lib/SigProfilerAssignment/src/FormatFiles/Sample_Files.DBS1248.all -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:18,369 copying build/lib/SigProfilerAssignment/src/FormatFiles/Sample_Files.SBS384.all -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/src/FormatFiles 2022-07-20T23:50:18,373 copying build/lib/SigProfilerAssignment/__init__.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-07-20T23:50:18,376 copying build/lib/SigProfilerAssignment/decomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-07-20T23:50:18,381 copying build/lib/SigProfilerAssignment/Analyzer.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-07-20T23:50:18,384 copying build/lib/SigProfilerAssignment/version.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-07-20T23:50:18,387 copying build/lib/SigProfilerAssignment/single_sample.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-07-20T23:50:18,394 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-07-20T23:50:18,395 copying build/lib/SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-07-20T23:50:18,400 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,401 copying build/lib/SigProfilerAssignment/data/vcftest/PD4115a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,421 copying build/lib/SigProfilerAssignment/data/vcftest/PD3905a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,433 copying build/lib/SigProfilerAssignment/data/vcftest/PD4198a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,444 copying build/lib/SigProfilerAssignment/data/vcftest/PD4086a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,451 copying build/lib/SigProfilerAssignment/data/vcftest/PD4116a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,466 copying build/lib/SigProfilerAssignment/data/vcftest/PD4006a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,482 copying build/lib/SigProfilerAssignment/data/vcftest/PD4085a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,489 copying build/lib/SigProfilerAssignment/data/vcftest/PD3890a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,500 copying build/lib/SigProfilerAssignment/data/vcftest/PD3945a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,516 copying build/lib/SigProfilerAssignment/data/vcftest/PD4192a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,524 copying build/lib/SigProfilerAssignment/data/vcftest/PD4199a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,537 copying build/lib/SigProfilerAssignment/data/vcftest/PD4120a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,621 copying build/lib/SigProfilerAssignment/data/vcftest/PD4109a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,638 copying build/lib/SigProfilerAssignment/data/vcftest/PD3851a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,645 copying build/lib/SigProfilerAssignment/data/vcftest/PD4107a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,661 copying build/lib/SigProfilerAssignment/data/vcftest/PD4088a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,666 copying build/lib/SigProfilerAssignment/data/vcftest/PD4248a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,674 copying build/lib/SigProfilerAssignment/data/vcftest/PD4194a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,680 copying build/lib/SigProfilerAssignment/data/vcftest/PD4103a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,691 copying build/lib/SigProfilerAssignment/data/vcftest/PD4005a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,701 copying build/lib/SigProfilerAssignment/data/vcftest/PD3904a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/vcftest 2022-07-20T23:50:18,712 copying build/lib/SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-07-20T23:50:18,725 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures 2022-07-20T23:50:18,728 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:18,730 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:18,735 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:18,745 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:18,750 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:18,755 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:18,762 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:18,773 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:18,786 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:18,790 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:18,795 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-07-20T23:50:18,811 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:18,813 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:18,845 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:18,852 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:18,862 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:18,875 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:18,880 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:18,891 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:18,896 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:18,903 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:18,909 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-07-20T23:50:18,922 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:18,924 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:18,930 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:18,935 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:18,945 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:18,956 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:18,961 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:18,965 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:18,975 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:18,980 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:18,992 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-07-20T23:50:19,001 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:19,002 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:19,008 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:19,018 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:19,022 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:19,027 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:19,039 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:19,046 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:19,051 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:19,056 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:19,061 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:19,067 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:19,078 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:19,083 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:19,095 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:19,100 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:19,112 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-07-20T23:50:19,119 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:19,121 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:19,133 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:19,145 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:19,150 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:19,154 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:19,166 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:19,171 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:19,175 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:19,182 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:19,192 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-07-20T23:50:19,197 copying build/lib/SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-07-20T23:50:19,200 copying build/lib/SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-07-20T23:50:19,223 copying build/lib/SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-07-20T23:50:19,231 copying build/lib/SigProfilerAssignment/data/Samples.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-07-20T23:50:19,235 copying build/lib/SigProfilerAssignment/data/Accolade_fermante.png -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-07-20T23:50:19,239 copying build/lib/SigProfilerAssignment/data/CNV_features.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-07-20T23:50:19,242 copying build/lib/SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-07-20T23:50:19,246 copying build/lib/SigProfilerAssignment/data/CNV_signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-07-20T23:50:19,251 copying build/lib/SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-07-20T23:50:19,256 copying build/lib/SigProfilerAssignment/data/csvexample.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-07-20T23:50:19,272 running install_egg_info 2022-07-20T23:50:20,018 Copying SigProfilerAssignment.egg-info to build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.0.8-py3.7.egg-info 2022-07-20T23:50:20,044 running install_scripts 2022-07-20T23:50:20,279 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2022-07-20T23:50:20,288 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.0.8.dist-info/WHEEL 2022-07-20T23:50:20,293 creating '/tmp/pip-wheel-g405et5q/SigProfilerAssignment-0.0.8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-07-20T23:50:20,298 adding 'SigProfilerAssignment/Analyzer.py' 2022-07-20T23:50:20,302 adding 'SigProfilerAssignment/__init__.py' 2022-07-20T23:50:20,314 adding 'SigProfilerAssignment/decompose_sub_routines.py' 2022-07-20T23:50:20,321 adding 'SigProfilerAssignment/decomposition.py' 2022-07-20T23:50:20,330 adding 'SigProfilerAssignment/single_sample.py' 2022-07-20T23:50:20,334 adding 'SigProfilerAssignment/version.py' 2022-07-20T23:50:20,338 adding 'SigProfilerAssignment/data/21_breast_WGS_substitutions.mat' 2022-07-20T23:50:20,342 adding 'SigProfilerAssignment/data/Accolade_fermante.png' 2022-07-20T23:50:20,345 adding 'SigProfilerAssignment/data/CNV_features.tsv' 2022-07-20T23:50:20,353 adding 'SigProfilerAssignment/data/CNV_signatures.txt' 2022-07-20T23:50:20,356 adding 'SigProfilerAssignment/data/CN_classes_dictionary.txt' 2022-07-20T23:50:20,394 adding 'SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx' 2022-07-20T23:50:20,505 adding 'SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx' 2022-07-20T23:50:20,518 adding 'SigProfilerAssignment/data/Samples.txt' 2022-07-20T23:50:20,521 adding 'SigProfilerAssignment/data/csvexample.csv' 2022-07-20T23:50:20,527 adding 'SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv' 2022-07-20T23:50:20,535 adding 'SigProfilerAssignment/data/sigProfiler_ID_signatures.csv' 2022-07-20T23:50:20,570 adding 'SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv' 2022-07-20T23:50:20,582 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt' 2022-07-20T23:50:20,602 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt' 2022-07-20T23:50:20,611 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt' 2022-07-20T23:50:20,625 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt' 2022-07-20T23:50:20,711 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt' 2022-07-20T23:50:20,722 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt' 2022-07-20T23:50:20,736 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt' 2022-07-20T23:50:20,792 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt' 2022-07-20T23:50:20,887 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt' 2022-07-20T23:50:20,899 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt' 2022-07-20T23:50:20,907 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt' 2022-07-20T23:50:20,922 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt' 2022-07-20T23:50:21,015 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt' 2022-07-20T23:50:21,026 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt' 2022-07-20T23:50:21,040 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt' 2022-07-20T23:50:21,120 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt' 2022-07-20T23:50:21,146 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt' 2022-07-20T23:50:21,177 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt' 2022-07-20T23:50:21,187 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt' 2022-07-20T23:50:21,273 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt' 2022-07-20T23:50:21,283 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt' 2022-07-20T23:50:21,377 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt' 2022-07-20T23:50:21,387 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt' 2022-07-20T23:50:21,480 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt' 2022-07-20T23:50:21,490 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt' 2022-07-20T23:50:21,570 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt' 2022-07-20T23:50:21,594 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt' 2022-07-20T23:50:21,625 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt' 2022-07-20T23:50:21,635 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt' 2022-07-20T23:50:21,721 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt' 2022-07-20T23:50:21,731 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt' 2022-07-20T23:50:21,824 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt' 2022-07-20T23:50:21,838 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt' 2022-07-20T23:50:21,931 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt' 2022-07-20T23:50:21,941 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt' 2022-07-20T23:50:22,020 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt' 2022-07-20T23:50:22,044 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt' 2022-07-20T23:50:22,075 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt' 2022-07-20T23:50:22,084 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt' 2022-07-20T23:50:22,169 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt' 2022-07-20T23:50:22,180 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt' 2022-07-20T23:50:22,273 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt' 2022-07-20T23:50:22,284 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt' 2022-07-20T23:50:22,381 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt' 2022-07-20T23:50:22,414 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt' 2022-07-20T23:50:22,493 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt' 2022-07-20T23:50:22,517 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt' 2022-07-20T23:50:22,548 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt' 2022-07-20T23:50:22,556 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt' 2022-07-20T23:50:22,642 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt' 2022-07-20T23:50:22,652 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt' 2022-07-20T23:50:22,745 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt' 2022-07-20T23:50:22,755 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt' 2022-07-20T23:50:22,848 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt' 2022-07-20T23:50:22,862 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt' 2022-07-20T23:50:22,942 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt' 2022-07-20T23:50:22,960 adding 'SigProfilerAssignment/data/vcftest/PD3851a.vcf' 2022-07-20T23:50:23,010 adding 'SigProfilerAssignment/data/vcftest/PD3890a.vcf' 2022-07-20T23:50:23,060 adding 'SigProfilerAssignment/data/vcftest/PD3904a.vcf' 2022-07-20T23:50:23,100 adding 'SigProfilerAssignment/data/vcftest/PD3905a.vcf' 2022-07-20T23:50:23,183 adding 'SigProfilerAssignment/data/vcftest/PD3945a.vcf' 2022-07-20T23:50:23,237 adding 'SigProfilerAssignment/data/vcftest/PD4005a.vcf' 2022-07-20T23:50:23,312 adding 'SigProfilerAssignment/data/vcftest/PD4006a.vcf' 2022-07-20T23:50:23,338 adding 'SigProfilerAssignment/data/vcftest/PD4085a.vcf' 2022-07-20T23:50:23,357 adding 'SigProfilerAssignment/data/vcftest/PD4086a.vcf' 2022-07-20T23:50:23,394 adding 'SigProfilerAssignment/data/vcftest/PD4088a.vcf' 2022-07-20T23:50:23,442 adding 'SigProfilerAssignment/data/vcftest/PD4103a.vcf' 2022-07-20T23:50:23,526 adding 'SigProfilerAssignment/data/vcftest/PD4107a.vcf' 2022-07-20T23:50:23,612 adding 'SigProfilerAssignment/data/vcftest/PD4109a.vcf' 2022-07-20T23:50:23,696 adding 'SigProfilerAssignment/data/vcftest/PD4115a.vcf' 2022-07-20T23:50:23,764 adding 'SigProfilerAssignment/data/vcftest/PD4116a.vcf' 2022-07-20T23:50:24,227 adding 'SigProfilerAssignment/data/vcftest/PD4120a.vcf' 2022-07-20T23:50:24,293 adding 'SigProfilerAssignment/data/vcftest/PD4192a.vcf' 2022-07-20T23:50:24,306 adding 'SigProfilerAssignment/data/vcftest/PD4194a.vcf' 2022-07-20T23:50:24,343 adding 'SigProfilerAssignment/data/vcftest/PD4198a.vcf' 2022-07-20T23:50:24,398 adding 'SigProfilerAssignment/data/vcftest/PD4199a.vcf' 2022-07-20T23:50:24,422 adding 'SigProfilerAssignment/data/vcftest/PD4248a.vcf' 2022-07-20T23:50:24,429 adding 'SigProfilerAssignment/src/Accolade_fermante.png' 2022-07-20T23:50:24,431 adding 'SigProfilerAssignment/src/CREDIT.md' 2022-07-20T23:50:24,704 adding 'SigProfilerAssignment/src/Fonts/Arial Bold.ttf' 2022-07-20T23:50:24,727 adding 'SigProfilerAssignment/src/FormatFiles/Sample_Files.DBS1248.all' 2022-07-20T23:50:24,730 adding 'SigProfilerAssignment/src/FormatFiles/Sample_Files.DBS186.all' 2022-07-20T23:50:24,749 adding 'SigProfilerAssignment/src/FormatFiles/Sample_Files.DBS2976.all' 2022-07-20T23:50:24,752 adding 'SigProfilerAssignment/src/FormatFiles/Sample_Files.DBS78.all' 2022-07-20T23:50:24,754 adding 'SigProfilerAssignment/src/FormatFiles/Sample_Files.ID28.all' 2022-07-20T23:50:24,757 adding 'SigProfilerAssignment/src/FormatFiles/Sample_Files.ID415.all' 2022-07-20T23:50:24,759 adding 'SigProfilerAssignment/src/FormatFiles/Sample_Files.ID83.all' 2022-07-20T23:50:24,768 adding 'SigProfilerAssignment/src/FormatFiles/Sample_Files.SBS1536.all' 2022-07-20T23:50:24,771 adding 'SigProfilerAssignment/src/FormatFiles/Sample_Files.SBS24.all' 2022-07-20T23:50:24,774 adding 'SigProfilerAssignment/src/FormatFiles/Sample_Files.SBS384.all' 2022-07-20T23:50:24,776 adding 'SigProfilerAssignment/src/FormatFiles/Sample_Files.SBS6.all' 2022-07-20T23:50:24,817 adding 'SigProfilerAssignment/src/FormatFiles/Sample_Files.SBS6144.all' 2022-07-20T23:50:24,821 adding 'SigProfilerAssignment/src/FormatFiles/Sample_Files.SBS96.all' 2022-07-20T23:50:24,825 adding 'SigProfilerAssignment-0.0.8.dist-info/LICENSE.txt' 2022-07-20T23:50:24,828 adding 'SigProfilerAssignment-0.0.8.dist-info/METADATA' 2022-07-20T23:50:24,830 adding 'SigProfilerAssignment-0.0.8.dist-info/WHEEL' 2022-07-20T23:50:24,832 adding 'SigProfilerAssignment-0.0.8.dist-info/top_level.txt' 2022-07-20T23:50:24,835 adding 'SigProfilerAssignment-0.0.8.dist-info/RECORD' 2022-07-20T23:50:24,992 removing build/bdist.linux-armv7l/wheel 2022-07-20T23:50:25,293 Building wheel for sigprofilerassignment (setup.py): finished with status 'done' 2022-07-20T23:50:25,411 Created wheel for sigprofilerassignment: filename=SigProfilerAssignment-0.0.8-py3-none-any.whl size=3797186 sha256=3f5230a1c23cb6df61406f2401c9d4fea5d655bb7f5799b37bb02288aab2e6d5 2022-07-20T23:50:25,413 Stored in directory: /tmp/pip-ephem-wheel-cache-sfxbtusm/wheels/f3/b6/69/5846b946671dbfe65e34da03027f8adb628e31658eae1b8709 2022-07-20T23:50:25,450 Successfully built sigprofilerassignment 2022-07-20T23:50:25,736 Removed build tracker: '/tmp/pip-build-tracker-vur64s31'