2022-07-21T03:27:59,330 Created temporary directory: /tmp/pip-ephem-wheel-cache-mpoa6k8l
2022-07-21T03:27:59,336 Created temporary directory: /tmp/pip-build-tracker-mdni9tg4
2022-07-21T03:27:59,337 Initialized build tracking at /tmp/pip-build-tracker-mdni9tg4
2022-07-21T03:27:59,337 Created build tracker: /tmp/pip-build-tracker-mdni9tg4
2022-07-21T03:27:59,337 Entered build tracker: /tmp/pip-build-tracker-mdni9tg4
2022-07-21T03:27:59,339 Created temporary directory: /tmp/pip-wheel-_b3irjli
2022-07-21T03:27:59,413 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-07-21T03:27:59,421 2 location(s) to search for versions of flair-brookslab:
2022-07-21T03:27:59,421 * https://pypi.org/simple/flair-brookslab/
2022-07-21T03:27:59,421 * https://www.piwheels.org/simple/flair-brookslab/
2022-07-21T03:27:59,422 Fetching project page and analyzing links: https://pypi.org/simple/flair-brookslab/
2022-07-21T03:27:59,423 Getting page https://pypi.org/simple/flair-brookslab/
2022-07-21T03:27:59,427 Found index url https://pypi.org/simple
2022-07-21T03:27:59,616   Found link https://files.pythonhosted.org/packages/7b/b0/81e9bccbec5b1eb63764e1629d4f6e4173d4e66a5a7f9380943d5721524d/flair-brookslab-1.6.0.tar.gz#sha256=eb2ea339bf85634f9c170dd9d5a622af4dc0efe5df7a8915458fac54bdc115df (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6), version: 1.6.0
2022-07-21T03:27:59,616   Skipping link: No binaries permitted for flair-brookslab: https://files.pythonhosted.org/packages/9e/2f/b358fc9d63fd1a681dfdf061864a5c7024d691ccd13de2ecf96c5771e90b/flair_brookslab-1.6.0-py3-none-any.whl#sha256=a11f8ecae405298721568a0b29d50a7eff6c64ce3c6be2268ac1c26b71f7ca53 (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6)
2022-07-21T03:27:59,618   Found link https://files.pythonhosted.org/packages/42/18/086b0e1cf3edfbc353025a02b0fb2aa146126e48a5853b364f2666d90be9/flair-brookslab-1.6.1.tar.gz#sha256=575958556060f07d6676115b697df246c4fe6a1957ffe18fe4074306650990a1 (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6), version: 1.6.1
2022-07-21T03:27:59,619   Skipping link: No binaries permitted for flair-brookslab: https://files.pythonhosted.org/packages/d8/5b/98f7e961a43cd0be92151fd25d89a1284996cc472e64e4f72c7b3fe7c8fc/flair_brookslab-1.6.1-py3-none-any.whl#sha256=c8561fe3e96cb168a4a3d387ce6d41bef41d850077b37859ff5bd6d794311a38 (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6)
2022-07-21T03:27:59,619 Fetching project page and analyzing links: https://www.piwheels.org/simple/flair-brookslab/
2022-07-21T03:27:59,620 Getting page https://www.piwheels.org/simple/flair-brookslab/
2022-07-21T03:27:59,622 Found index url https://www.piwheels.org/simple
2022-07-21T03:27:59,849   Skipping link: No binaries permitted for flair-brookslab: https://www.piwheels.org/simple/flair-brookslab/flair_brookslab-1.6.0-py3-none-any.whl#sha256=42ffc8ce342e04c7e8a51c1ec41186e9142440e459349cd7fd4a9b7b42098b70 (from https://www.piwheels.org/simple/flair-brookslab/) (requires-python:>=3.6)
2022-07-21T03:27:59,850 Skipping link: not a file: https://www.piwheels.org/simple/flair-brookslab/
2022-07-21T03:27:59,850 Skipping link: not a file: https://pypi.org/simple/flair-brookslab/
2022-07-21T03:27:59,885 Given no hashes to check 1 links for project 'flair-brookslab': discarding no candidates
2022-07-21T03:27:59,916 Collecting flair-brookslab==1.6.1
2022-07-21T03:27:59,921   Created temporary directory: /tmp/pip-unpack-cu9ia0fy
2022-07-21T03:28:00,360   Downloading flair-brookslab-1.6.1.tar.gz (99 kB)
2022-07-21T03:28:00,685   Added flair-brookslab==1.6.1 from https://files.pythonhosted.org/packages/42/18/086b0e1cf3edfbc353025a02b0fb2aa146126e48a5853b364f2666d90be9/flair-brookslab-1.6.1.tar.gz#sha256=575958556060f07d6676115b697df246c4fe6a1957ffe18fe4074306650990a1 to build tracker '/tmp/pip-build-tracker-mdni9tg4'
2022-07-21T03:28:00,692   Created temporary directory: /tmp/pip-build-env-fpi2hs17
2022-07-21T03:28:00,706   Created temporary directory: /tmp/pip-standalone-pip-alb4ykpg
2022-07-21T03:28:02,998   Installing build dependencies: started
2022-07-21T03:28:03,001   Running command pip subprocess to install build dependencies
2022-07-21T03:28:12,468   Using pip 22.1.2 from /tmp/pip-standalone-pip-alb4ykpg/__env_pip__.zip/pip (python 3.7)
2022-07-21T03:28:14,274   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-07-21T03:28:18,342   Collecting setuptools>=42
2022-07-21T03:28:18,619     Using cached https://www.piwheels.org/simple/setuptools/setuptools-63.2.0-py3-none-any.whl (1.2 MB)
2022-07-21T03:28:29,020   Installing collected packages: setuptools
2022-07-21T03:28:33,874   Successfully installed setuptools-63.2.0
2022-07-21T03:28:34,554   Installing build dependencies: finished with status 'done'
2022-07-21T03:28:34,582   Getting requirements to build wheel: started
2022-07-21T03:28:34,584   Running command Getting requirements to build wheel
2022-07-21T03:28:39,399   running egg_info
2022-07-21T03:28:40,033   writing src/flair_brookslab.egg-info/PKG-INFO
2022-07-21T03:28:40,625   writing dependency_links to src/flair_brookslab.egg-info/dependency_links.txt
2022-07-21T03:28:42,399   writing entry points to src/flair_brookslab.egg-info/entry_points.txt
2022-07-21T03:28:43,580   writing requirements to src/flair_brookslab.egg-info/requires.txt
2022-07-21T03:28:44,175   writing top-level names to src/flair_brookslab.egg-info/top_level.txt
2022-07-21T03:28:44,952   reading manifest file 'src/flair_brookslab.egg-info/SOURCES.txt'
2022-07-21T03:28:44,960   adding license file 'LICENSE.txt'
2022-07-21T03:28:44,970   writing manifest file 'src/flair_brookslab.egg-info/SOURCES.txt'
2022-07-21T03:28:45,190   Getting requirements to build wheel: finished with status 'done'
2022-07-21T03:28:45,216   Created temporary directory: /tmp/pip-standalone-pip-3ydqwkc9
2022-07-21T03:28:47,476   Installing backend dependencies: started
2022-07-21T03:28:47,478   Running command pip subprocess to install backend dependencies
2022-07-21T03:28:57,010   Using pip 22.1.2 from /tmp/pip-standalone-pip-3ydqwkc9/__env_pip__.zip/pip (python 3.7)
2022-07-21T03:28:58,825   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-07-21T03:28:59,696   Collecting wheel
2022-07-21T03:28:59,733     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-07-21T03:29:09,357   Installing collected packages: wheel
2022-07-21T03:29:09,641     Creating /tmp/pip-build-env-fpi2hs17/normal/bin
2022-07-21T03:29:09,646     changing mode of /tmp/pip-build-env-fpi2hs17/normal/bin/wheel to 755
2022-07-21T03:29:09,674   Successfully installed wheel-0.37.1
2022-07-21T03:29:10,288   Installing backend dependencies: finished with status 'done'
2022-07-21T03:29:10,309   Created temporary directory: /tmp/pip-modern-metadata-q4dsus5j
2022-07-21T03:29:10,316   Preparing metadata (pyproject.toml): started
2022-07-21T03:29:10,318   Running command Preparing metadata (pyproject.toml)
2022-07-21T03:29:14,896   running dist_info
2022-07-21T03:29:15,561   creating /tmp/pip-modern-metadata-q4dsus5j/flair_brookslab.egg-info
2022-07-21T03:29:16,203   writing /tmp/pip-modern-metadata-q4dsus5j/flair_brookslab.egg-info/PKG-INFO
2022-07-21T03:29:16,809   writing dependency_links to /tmp/pip-modern-metadata-q4dsus5j/flair_brookslab.egg-info/dependency_links.txt
2022-07-21T03:29:18,618   writing entry points to /tmp/pip-modern-metadata-q4dsus5j/flair_brookslab.egg-info/entry_points.txt
2022-07-21T03:29:19,825   writing requirements to /tmp/pip-modern-metadata-q4dsus5j/flair_brookslab.egg-info/requires.txt
2022-07-21T03:29:20,430   writing top-level names to /tmp/pip-modern-metadata-q4dsus5j/flair_brookslab.egg-info/top_level.txt
2022-07-21T03:29:20,433   writing manifest file '/tmp/pip-modern-metadata-q4dsus5j/flair_brookslab.egg-info/SOURCES.txt'
2022-07-21T03:29:21,218   reading manifest file '/tmp/pip-modern-metadata-q4dsus5j/flair_brookslab.egg-info/SOURCES.txt'
2022-07-21T03:29:21,221   adding license file 'LICENSE.txt'
2022-07-21T03:29:21,229   writing manifest file '/tmp/pip-modern-metadata-q4dsus5j/flair_brookslab.egg-info/SOURCES.txt'
2022-07-21T03:29:21,232   creating '/tmp/pip-modern-metadata-q4dsus5j/flair_brookslab-1.6.1.dist-info'
2022-07-21T03:29:21,450   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2022-07-21T03:29:21,682   Preparing metadata (pyproject.toml): finished with status 'done'
2022-07-21T03:29:21,696   Source in /tmp/pip-wheel-_b3irjli/flair-brookslab_fc71c7be767b467dadd6a1b7794f44a1 has version 1.6.1, which satisfies requirement flair-brookslab==1.6.1 from https://files.pythonhosted.org/packages/42/18/086b0e1cf3edfbc353025a02b0fb2aa146126e48a5853b364f2666d90be9/flair-brookslab-1.6.1.tar.gz#sha256=575958556060f07d6676115b697df246c4fe6a1957ffe18fe4074306650990a1
2022-07-21T03:29:21,698   Removed flair-brookslab==1.6.1 from https://files.pythonhosted.org/packages/42/18/086b0e1cf3edfbc353025a02b0fb2aa146126e48a5853b364f2666d90be9/flair-brookslab-1.6.1.tar.gz#sha256=575958556060f07d6676115b697df246c4fe6a1957ffe18fe4074306650990a1 from build tracker '/tmp/pip-build-tracker-mdni9tg4'
2022-07-21T03:29:21,711 Created temporary directory: /tmp/pip-unpack-0mnxxakj
2022-07-21T03:29:21,713 Building wheels for collected packages: flair-brookslab
2022-07-21T03:29:21,722   Created temporary directory: /tmp/pip-wheel-zqto403x
2022-07-21T03:29:21,723   Destination directory: /tmp/pip-wheel-zqto403x
2022-07-21T03:29:21,728   Building wheel for flair-brookslab (pyproject.toml): started
2022-07-21T03:29:21,730   Running command Building wheel for flair-brookslab (pyproject.toml)
2022-07-21T03:29:25,742   running bdist_wheel
2022-07-21T03:29:26,984   running build
2022-07-21T03:29:26,984   running build_py
2022-07-21T03:29:27,616   creating build
2022-07-21T03:29:27,617   creating build/lib
2022-07-21T03:29:27,618   creating build/lib/flair
2022-07-21T03:29:27,620   copying src/flair/diff_iso_usage.py -> build/lib/flair
2022-07-21T03:29:27,624   copying src/flair/ssPrep.py -> build/lib/flair
2022-07-21T03:29:27,628   copying src/flair/filter_collapsed_isoforms_from_annotation.py -> build/lib/flair
2022-07-21T03:29:27,632   copying src/flair/__init__.py -> build/lib/flair
2022-07-21T03:29:27,635   copying src/flair/gtf_to_psl.py -> build/lib/flair
2022-07-21T03:29:27,639   copying src/flair/filter_collapsed_isoforms.py -> build/lib/flair
2022-07-21T03:29:27,642   copying src/flair/subset_unassigned_reads.py -> build/lib/flair
2022-07-21T03:29:27,645   copying src/flair/combine_counts.py -> build/lib/flair
2022-07-21T03:29:27,649   copying src/flair/counts_to_tpm.py -> build/lib/flair
2022-07-21T03:29:27,652   copying src/flair/predictProductivity.py -> build/lib/flair
2022-07-21T03:29:27,656   copying src/flair/pull_starts.py -> build/lib/flair
2022-07-21T03:29:27,659   copying src/flair/bam2Bed12.py -> build/lib/flair
2022-07-21T03:29:27,663   copying src/flair/identify_annotated_gene.py -> build/lib/flair
2022-07-21T03:29:27,667   copying src/flair/identify_gene_isoform.py -> build/lib/flair
2022-07-21T03:29:27,671   copying src/flair/get_phase_sets.py -> build/lib/flair
2022-07-21T03:29:27,674   copying src/flair/count_sam_transcripts.py -> build/lib/flair
2022-07-21T03:29:27,679   copying src/flair/call_diffsplice_events.py -> build/lib/flair
2022-07-21T03:29:27,683   copying src/flair/flair.py -> build/lib/flair
2022-07-21T03:29:27,689   copying src/flair/fasta_seq_lengths.py -> build/lib/flair
2022-07-21T03:29:27,692   copying src/flair/runDS.py -> build/lib/flair
2022-07-21T03:29:27,696   copying src/flair/es_as_inc_excl_to_counts.py -> build/lib/flair
2022-07-21T03:29:27,699   copying src/flair/runDU.py -> build/lib/flair
2022-07-21T03:29:27,702   copying src/flair/ssCorrect.py -> build/lib/flair
2022-07-21T03:29:27,706   copying src/flair/match_counts.py -> build/lib/flair
2022-07-21T03:29:27,709   copying src/flair/filter_isoforms_by_proportion_of_gene_expr.py -> build/lib/flair
2022-07-21T03:29:27,712   copying src/flair/deFLAIR.py -> build/lib/flair
2022-07-21T03:29:27,716   copying src/flair/bed_to_psl.py -> build/lib/flair
2022-07-21T03:29:27,719   copying src/flair/es_as.py -> build/lib/flair
2022-07-21T03:29:27,723   copying src/flair/samJuncs.py -> build/lib/flair
2022-07-21T03:29:27,727   copying src/flair/psl_reads_from_bed.py -> build/lib/flair
2022-07-21T03:29:27,730   copying src/flair/sam_to_psl.py -> build/lib/flair
2022-07-21T03:29:27,733   copying src/flair/psl_to_gtf.py -> build/lib/flair
2022-07-21T03:29:27,736   copying src/flair/psl_to_bed.py -> build/lib/flair
2022-07-21T03:29:27,739   copying src/flair/runDE.py -> build/lib/flair
2022-07-21T03:29:27,743   copying src/flair/psl_to_sequence.py -> build/lib/flair
2022-07-21T03:29:27,747   copying src/flair/collapse_isoforms_precise.py -> build/lib/flair
2022-07-21T03:29:27,752   copying src/flair/consolidate_isoforms.py -> build/lib/flair
2022-07-21T03:29:27,755   copying src/flair/runFish.py -> build/lib/flair
2022-07-21T03:29:27,764   running build_scripts
2022-07-21T03:29:27,764   creating build/scripts-3.7
2022-07-21T03:29:27,766   copying and adjusting bin/junctions_from_sam -> build/scripts-3.7
2022-07-21T03:29:27,774   copying and adjusting bin/mark_intron_retention -> build/scripts-3.7
2022-07-21T03:29:27,776   copying and adjusting bin/mark_productivity -> build/scripts-3.7
2022-07-21T03:29:27,780   copying and adjusting bin/normalize_counts_matrix -> build/scripts-3.7
2022-07-21T03:29:27,783   copying and adjusting bin/bam2Bed12 -> build/scripts-3.7
2022-07-21T03:29:27,787   copying and adjusting bin/bed_to_psl -> build/scripts-3.7
2022-07-21T03:29:27,790   copying and adjusting bin/diff_iso_usage -> build/scripts-3.7
2022-07-21T03:29:27,792   copying and adjusting bin/diffsplice_fishers_exact -> build/scripts-3.7
2022-07-21T03:29:27,795   copying and adjusting bin/plot_isoform_usage -> build/scripts-3.7
2022-07-21T03:29:27,800   copying and adjusting bin/predictProductivity -> build/scripts-3.7
2022-07-21T03:29:27,804   copying and adjusting bin/psl_to_bed -> build/scripts-3.7
2022-07-21T03:29:27,807   copying and adjusting bin/sam_to_map -> build/scripts-3.7
2022-07-21T03:29:27,809   changing mode of build/scripts-3.7/junctions_from_sam from 644 to 755
2022-07-21T03:29:27,809   changing mode of build/scripts-3.7/mark_intron_retention from 644 to 755
2022-07-21T03:29:27,810   changing mode of build/scripts-3.7/mark_productivity from 644 to 755
2022-07-21T03:29:27,810   changing mode of build/scripts-3.7/normalize_counts_matrix from 644 to 755
2022-07-21T03:29:27,810   changing mode of build/scripts-3.7/bam2Bed12 from 644 to 755
2022-07-21T03:29:27,811   changing mode of build/scripts-3.7/bed_to_psl from 644 to 755
2022-07-21T03:29:27,811   changing mode of build/scripts-3.7/diff_iso_usage from 644 to 755
2022-07-21T03:29:27,812   changing mode of build/scripts-3.7/diffsplice_fishers_exact from 644 to 755
2022-07-21T03:29:27,812   changing mode of build/scripts-3.7/plot_isoform_usage from 644 to 755
2022-07-21T03:29:27,813   changing mode of build/scripts-3.7/predictProductivity from 644 to 755
2022-07-21T03:29:27,813   changing mode of build/scripts-3.7/psl_to_bed from 644 to 755
2022-07-21T03:29:27,813   changing mode of build/scripts-3.7/sam_to_map from 644 to 755
2022-07-21T03:29:29,090   installing to build/bdist.linux-armv7l/wheel
2022-07-21T03:29:29,091   running install
2022-07-21T03:29:29,152   running install_lib
2022-07-21T03:29:29,794   creating build/bdist.linux-armv7l
2022-07-21T03:29:29,795   creating build/bdist.linux-armv7l/wheel
2022-07-21T03:29:29,799   creating build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,801   copying build/lib/flair/diff_iso_usage.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,805   copying build/lib/flair/ssPrep.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,810   copying build/lib/flair/filter_collapsed_isoforms_from_annotation.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,815   copying build/lib/flair/__init__.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,818   copying build/lib/flair/gtf_to_psl.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,823   copying build/lib/flair/filter_collapsed_isoforms.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,827   copying build/lib/flair/subset_unassigned_reads.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,830   copying build/lib/flair/combine_counts.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,833   copying build/lib/flair/counts_to_tpm.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,836   copying build/lib/flair/predictProductivity.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,841   copying build/lib/flair/pull_starts.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,844   copying build/lib/flair/bam2Bed12.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,848   copying build/lib/flair/identify_annotated_gene.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,852   copying build/lib/flair/identify_gene_isoform.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,857   copying build/lib/flair/get_phase_sets.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,861   copying build/lib/flair/count_sam_transcripts.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,866   copying build/lib/flair/call_diffsplice_events.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,870   copying build/lib/flair/flair.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,878   copying build/lib/flair/fasta_seq_lengths.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,882   copying build/lib/flair/runDS.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,887   copying build/lib/flair/es_as_inc_excl_to_counts.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,891   copying build/lib/flair/runDU.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,895   copying build/lib/flair/ssCorrect.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,901   copying build/lib/flair/match_counts.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,905   copying build/lib/flair/filter_isoforms_by_proportion_of_gene_expr.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,909   copying build/lib/flair/deFLAIR.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,914   copying build/lib/flair/bed_to_psl.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,918   copying build/lib/flair/es_as.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,923   copying build/lib/flair/samJuncs.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,928   copying build/lib/flair/psl_reads_from_bed.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,932   copying build/lib/flair/sam_to_psl.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,936   copying build/lib/flair/psl_to_gtf.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,941   copying build/lib/flair/psl_to_bed.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,945   copying build/lib/flair/runDE.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,950   copying build/lib/flair/psl_to_sequence.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,955   copying build/lib/flair/collapse_isoforms_precise.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,961   copying build/lib/flair/consolidate_isoforms.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,965   copying build/lib/flair/runFish.py -> build/bdist.linux-armv7l/wheel/flair
2022-07-21T03:29:29,969   running install_egg_info
2022-07-21T03:29:31,342   running egg_info
2022-07-21T03:29:31,970   writing src/flair_brookslab.egg-info/PKG-INFO
2022-07-21T03:29:32,562   writing dependency_links to src/flair_brookslab.egg-info/dependency_links.txt
2022-07-21T03:29:34,338   writing entry points to src/flair_brookslab.egg-info/entry_points.txt
2022-07-21T03:29:35,516   writing requirements to src/flair_brookslab.egg-info/requires.txt
2022-07-21T03:29:36,106   writing top-level names to src/flair_brookslab.egg-info/top_level.txt
2022-07-21T03:29:36,153   reading manifest file 'src/flair_brookslab.egg-info/SOURCES.txt'
2022-07-21T03:29:36,159   adding license file 'LICENSE.txt'
2022-07-21T03:29:36,169   writing manifest file 'src/flair_brookslab.egg-info/SOURCES.txt'
2022-07-21T03:29:36,172   Copying src/flair_brookslab.egg-info to build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1-py3.7.egg-info
2022-07-21T03:29:36,196   running install_scripts
2022-07-21T03:29:36,310   creating build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data
2022-07-21T03:29:36,312   creating build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts
2022-07-21T03:29:36,314   copying build/scripts-3.7/diffsplice_fishers_exact -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts
2022-07-21T03:29:36,318   copying build/scripts-3.7/diff_iso_usage -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts
2022-07-21T03:29:36,322   copying build/scripts-3.7/junctions_from_sam -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts
2022-07-21T03:29:36,328   copying build/scripts-3.7/normalize_counts_matrix -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts
2022-07-21T03:29:36,332   copying build/scripts-3.7/mark_productivity -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts
2022-07-21T03:29:36,337   copying build/scripts-3.7/mark_intron_retention -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts
2022-07-21T03:29:36,341   copying build/scripts-3.7/plot_isoform_usage -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts
2022-07-21T03:29:36,346   copying build/scripts-3.7/predictProductivity -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts
2022-07-21T03:29:36,351   copying build/scripts-3.7/bed_to_psl -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts
2022-07-21T03:29:36,355   copying build/scripts-3.7/bam2Bed12 -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts
2022-07-21T03:29:36,359   copying build/scripts-3.7/psl_to_bed -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts
2022-07-21T03:29:36,363   copying build/scripts-3.7/sam_to_map -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts
2022-07-21T03:29:36,366   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts/diffsplice_fishers_exact to 755
2022-07-21T03:29:36,367   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts/diff_iso_usage to 755
2022-07-21T03:29:36,368   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts/junctions_from_sam to 755
2022-07-21T03:29:36,369   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts/normalize_counts_matrix to 755
2022-07-21T03:29:36,371   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts/mark_productivity to 755
2022-07-21T03:29:36,372   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts/mark_intron_retention to 755
2022-07-21T03:29:36,373   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts/plot_isoform_usage to 755
2022-07-21T03:29:36,374   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts/predictProductivity to 755
2022-07-21T03:29:36,375   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts/bed_to_psl to 755
2022-07-21T03:29:36,376   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts/bam2Bed12 to 755
2022-07-21T03:29:36,377   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts/psl_to_bed to 755
2022-07-21T03:29:36,378   changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.data/scripts/sam_to_map to 755
2022-07-21T03:29:36,434   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2022-07-21T03:29:36,442   creating build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.1.dist-info/WHEEL
2022-07-21T03:29:36,446   creating '/tmp/pip-wheel-zqto403x/tmpxr6rbsh9/flair_brookslab-1.6.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-07-21T03:29:36,452   adding 'flair/__init__.py'
2022-07-21T03:29:36,455   adding 'flair/bam2Bed12.py'
2022-07-21T03:29:36,457   adding 'flair/bed_to_psl.py'
2022-07-21T03:29:36,461   adding 'flair/call_diffsplice_events.py'
2022-07-21T03:29:36,470   adding 'flair/collapse_isoforms_precise.py'
2022-07-21T03:29:36,473   adding 'flair/combine_counts.py'
2022-07-21T03:29:36,476   adding 'flair/consolidate_isoforms.py'
2022-07-21T03:29:36,481   adding 'flair/count_sam_transcripts.py'
2022-07-21T03:29:36,484   adding 'flair/counts_to_tpm.py'
2022-07-21T03:29:36,488   adding 'flair/deFLAIR.py'
2022-07-21T03:29:36,491   adding 'flair/diff_iso_usage.py'
2022-07-21T03:29:36,495   adding 'flair/es_as.py'
2022-07-21T03:29:36,497   adding 'flair/es_as_inc_excl_to_counts.py'
2022-07-21T03:29:36,499   adding 'flair/fasta_seq_lengths.py'
2022-07-21T03:29:36,503   adding 'flair/filter_collapsed_isoforms.py'
2022-07-21T03:29:36,507   adding 'flair/filter_collapsed_isoforms_from_annotation.py'
2022-07-21T03:29:36,510   adding 'flair/filter_isoforms_by_proportion_of_gene_expr.py'
2022-07-21T03:29:36,525   adding 'flair/flair.py'
2022-07-21T03:29:36,529   adding 'flair/get_phase_sets.py'
2022-07-21T03:29:36,533   adding 'flair/gtf_to_psl.py'
2022-07-21T03:29:36,536   adding 'flair/identify_annotated_gene.py'
2022-07-21T03:29:36,540   adding 'flair/identify_gene_isoform.py'
2022-07-21T03:29:36,543   adding 'flair/match_counts.py'
2022-07-21T03:29:36,547   adding 'flair/predictProductivity.py'
2022-07-21T03:29:36,550   adding 'flair/psl_reads_from_bed.py'
2022-07-21T03:29:36,552   adding 'flair/psl_to_bed.py'
2022-07-21T03:29:36,555   adding 'flair/psl_to_gtf.py'
2022-07-21T03:29:36,559   adding 'flair/psl_to_sequence.py'
2022-07-21T03:29:36,561   adding 'flair/pull_starts.py'
2022-07-21T03:29:36,564   adding 'flair/runDE.py'
2022-07-21T03:29:36,568   adding 'flair/runDS.py'
2022-07-21T03:29:36,572   adding 'flair/runDU.py'
2022-07-21T03:29:36,575   adding 'flair/runFish.py'
2022-07-21T03:29:36,579   adding 'flair/samJuncs.py'
2022-07-21T03:29:36,582   adding 'flair/sam_to_psl.py'
2022-07-21T03:29:36,587   adding 'flair/ssCorrect.py'
2022-07-21T03:29:36,593   adding 'flair/ssPrep.py'
2022-07-21T03:29:36,595   adding 'flair/subset_unassigned_reads.py'
2022-07-21T03:29:36,601   adding 'flair_brookslab-1.6.1.data/scripts/bam2Bed12'
2022-07-21T03:29:36,603   adding 'flair_brookslab-1.6.1.data/scripts/bed_to_psl'
2022-07-21T03:29:36,606   adding 'flair_brookslab-1.6.1.data/scripts/diff_iso_usage'
2022-07-21T03:29:36,608   adding 'flair_brookslab-1.6.1.data/scripts/diffsplice_fishers_exact'
2022-07-21T03:29:36,616   adding 'flair_brookslab-1.6.1.data/scripts/junctions_from_sam'
2022-07-21T03:29:36,620   adding 'flair_brookslab-1.6.1.data/scripts/mark_intron_retention'
2022-07-21T03:29:36,623   adding 'flair_brookslab-1.6.1.data/scripts/mark_productivity'
2022-07-21T03:29:36,626   adding 'flair_brookslab-1.6.1.data/scripts/normalize_counts_matrix'
2022-07-21T03:29:36,631   adding 'flair_brookslab-1.6.1.data/scripts/plot_isoform_usage'
2022-07-21T03:29:36,636   adding 'flair_brookslab-1.6.1.data/scripts/predictProductivity'
2022-07-21T03:29:36,638   adding 'flair_brookslab-1.6.1.data/scripts/psl_to_bed'
2022-07-21T03:29:36,641   adding 'flair_brookslab-1.6.1.data/scripts/sam_to_map'
2022-07-21T03:29:36,645   adding 'flair_brookslab-1.6.1.dist-info/LICENSE.txt'
2022-07-21T03:29:36,648   adding 'flair_brookslab-1.6.1.dist-info/METADATA'
2022-07-21T03:29:36,650   adding 'flair_brookslab-1.6.1.dist-info/WHEEL'
2022-07-21T03:29:36,651   adding 'flair_brookslab-1.6.1.dist-info/entry_points.txt'
2022-07-21T03:29:36,653   adding 'flair_brookslab-1.6.1.dist-info/top_level.txt'
2022-07-21T03:29:36,656   adding 'flair_brookslab-1.6.1.dist-info/RECORD'
2022-07-21T03:29:36,663   removing build/bdist.linux-armv7l/wheel
2022-07-21T03:29:36,950   Building wheel for flair-brookslab (pyproject.toml): finished with status 'done'
2022-07-21T03:29:36,969   Created wheel for flair-brookslab: filename=flair_brookslab-1.6.1-py3-none-any.whl size=123385 sha256=63b007d0dce4210fd98049ce9930ab7a1fc691598b4e4ab3b1a9342ae365c7ec
2022-07-21T03:29:36,972   Stored in directory: /tmp/pip-ephem-wheel-cache-mpoa6k8l/wheels/3f/fc/bb/89f8c88f051a9ff20f07e8e8f3ebfa60fa7e57e9e75df542dd
2022-07-21T03:29:36,998 Successfully built flair-brookslab
2022-07-21T03:29:37,016 Removed build tracker: '/tmp/pip-build-tracker-mdni9tg4'