2022-07-27T02:45:57,666 Created temporary directory: /tmp/pip-ephem-wheel-cache-oh24nfdd
2022-07-27T02:45:57,671 Created temporary directory: /tmp/pip-build-tracker-gwof5syj
2022-07-27T02:45:57,672 Initialized build tracking at /tmp/pip-build-tracker-gwof5syj
2022-07-27T02:45:57,673 Created build tracker: /tmp/pip-build-tracker-gwof5syj
2022-07-27T02:45:57,673 Entered build tracker: /tmp/pip-build-tracker-gwof5syj
2022-07-27T02:45:57,674 Created temporary directory: /tmp/pip-wheel-bpvok1v6
2022-07-27T02:45:57,743 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-07-27T02:45:57,751 2 location(s) to search for versions of ilus:
2022-07-27T02:45:57,751 * https://pypi.org/simple/ilus/
2022-07-27T02:45:57,751 * https://www.piwheels.org/simple/ilus/
2022-07-27T02:45:57,752 Fetching project page and analyzing links: https://pypi.org/simple/ilus/
2022-07-27T02:45:57,753 Getting page https://pypi.org/simple/ilus/
2022-07-27T02:45:57,757 Found index url https://pypi.org/simple
2022-07-27T02:45:57,949   Found link https://files.pythonhosted.org/packages/8e/55/649bd50aabb4f4b880b612986acaa44a19b692302b7a5a922def75599f5c/ilus-0.1.0.tar.gz#sha256=767a37912251f975aa58152f257c6e58fcc3e7a3bda060c85cda4f26b10a827f (from https://pypi.org/simple/ilus/), version: 0.1.0
2022-07-27T02:45:57,950   Found link https://files.pythonhosted.org/packages/64/d1/c750f25d5de6a9fc5a603feed5c7059c5c7f1aa6809fa9c58e1381be2ca2/ilus-1.0.0.tar.gz#sha256=bdb974377abaecf6074d1992de8f925bc67d95f4fdd0bf7aa47b23187f661ced (from https://pypi.org/simple/ilus/), version: 1.0.0
2022-07-27T02:45:57,951   Found link https://files.pythonhosted.org/packages/c8/bf/3716a026b6ebcb7028105356ac7922739ab7872a63eb43f7dfd886c5c5db/ilus-1.0.1.tar.gz#sha256=3fb04424d0f6cd75ad0dc7ffbbd8fead26054fc6c8bd04b8e90fc9799f23ce21 (from https://pypi.org/simple/ilus/), version: 1.0.1
2022-07-27T02:45:57,952   Found link https://files.pythonhosted.org/packages/33/4a/0974529431296c5238c63eb91442bbe1176b16f82ce971cf237dac4c8627/ilus-1.0.2.tar.gz#sha256=e80d3144c58fe3b341114dafe035c4d4826258a7d0c8a109cbd5dd780201f228 (from https://pypi.org/simple/ilus/), version: 1.0.2
2022-07-27T02:45:57,953   Found link https://files.pythonhosted.org/packages/5e/1b/630c5a16f2e4a5e5a4c28e15a20f787daf1e0b0472d1a3439f4d18fb4871/ilus-1.0.3.tar.gz#sha256=abe78bfca9a55ef26dc5b261ce5d24855d0c56b6f5d06d3603ca758a4a745e22 (from https://pypi.org/simple/ilus/), version: 1.0.3
2022-07-27T02:45:57,953   Found link https://files.pythonhosted.org/packages/7d/90/c6c93779518796a59e0022ea5177b93bf0552e83160e9d1e8fafe34dfdec/ilus-1.0.4.tar.gz#sha256=b58490f0a9f5b7f0b95c158b01da234e7c53a3a14dab6ffce1df44d9a68497cb (from https://pypi.org/simple/ilus/), version: 1.0.4
2022-07-27T02:45:57,954   Found link https://files.pythonhosted.org/packages/f2/91/43458918520aa40a030b566ce3596210a4d855a84e3d15ddaa01830a0e8d/ilus-1.1.0.tar.gz#sha256=6718f6974318107260fe6346af26ada4470cd5c0b567000086bfb2484c9d443c (from https://pypi.org/simple/ilus/), version: 1.1.0
2022-07-27T02:45:57,955   Found link https://files.pythonhosted.org/packages/ef/90/20e1da660596a5f39ff1da1bd0ba4a484bb229ace3bfc77b0169d1636acd/ilus-1.1.1.tar.gz#sha256=aca09f6f8d403a4fabeb5cf1b4b1533da853121cef460e209314e65edd26941b (from https://pypi.org/simple/ilus/), version: 1.1.1
2022-07-27T02:45:57,955   Found link https://files.pythonhosted.org/packages/0d/45/799c5f23cf1dedc8a7fa996f1d091a4d5e0f8b62eba461da5e60c50ad2eb/ilus-1.2.1.tar.gz#sha256=5c5e138e2db295603eb24951ba34b15514cca314987734024acbbb20af2a6cbb (from https://pypi.org/simple/ilus/), version: 1.2.1
2022-07-27T02:45:57,956   Found link https://files.pythonhosted.org/packages/33/d9/1e1d7c5aa517e4648fbdfc9be2752fbf2424608e134845637241833f4f58/ilus-1.2.2.tar.gz#sha256=69a9f761e78f225a10383cdd4e2b0d3e75ef348b7d77621492f026bfa3ad3f15 (from https://pypi.org/simple/ilus/), version: 1.2.2
2022-07-27T02:45:57,957 Fetching project page and analyzing links: https://www.piwheels.org/simple/ilus/
2022-07-27T02:45:57,958 Getting page https://www.piwheels.org/simple/ilus/
2022-07-27T02:45:57,960 Found index url https://www.piwheels.org/simple
2022-07-27T02:45:58,168   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.2.1-py3-none-any.whl#sha256=b35d6734ffaccb93bea222efb586b94c5e948e69b9410862e345c77db351eedb (from https://www.piwheels.org/simple/ilus/)
2022-07-27T02:45:58,168   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.1.1-py3-none-any.whl#sha256=e6c1337f5257980949564552b79bff1f389200cf3ad322a5f849728263b321f4 (from https://www.piwheels.org/simple/ilus/)
2022-07-27T02:45:58,169   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.1.0-py3-none-any.whl#sha256=d696434a6d520599e55cead1b1aed46c68b4068394416117d1cadd7f36db6c7d (from https://www.piwheels.org/simple/ilus/)
2022-07-27T02:45:58,169   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.0.4-py3-none-any.whl#sha256=e882e54d1fda965bbe97cd5c70a977824f1d81e79091d8679ea47c84bdd167f6 (from https://www.piwheels.org/simple/ilus/)
2022-07-27T02:45:58,170   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.0.2-py3-none-any.whl#sha256=d390a4ba1fee50a6e7041c77c317907d02dc3a78aa4f6c43699ca60147b43161 (from https://www.piwheels.org/simple/ilus/)
2022-07-27T02:45:58,170   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.0.1-py3-none-any.whl#sha256=b1787a95b35aa0f798fa13b7407a034445b46252d3453354d569d03a9bd458ce (from https://www.piwheels.org/simple/ilus/)
2022-07-27T02:45:58,171   Skipping link: No binaries permitted for ilus: https://www.piwheels.org/simple/ilus/ilus-1.0.0-py3-none-any.whl#sha256=f6edd0ca8dd180f27744489a2d97500ea9bbf8a31d1fd67abd9eb7b33fc5e275 (from https://www.piwheels.org/simple/ilus/)
2022-07-27T02:45:58,172 Skipping link: not a file: https://www.piwheels.org/simple/ilus/
2022-07-27T02:45:58,172 Skipping link: not a file: https://pypi.org/simple/ilus/
2022-07-27T02:45:58,209 Given no hashes to check 1 links for project 'ilus': discarding no candidates
2022-07-27T02:45:58,240 Collecting ilus==1.2.2
2022-07-27T02:45:58,245   Created temporary directory: /tmp/pip-unpack-v1yrf00c
2022-07-27T02:45:58,811   Downloading ilus-1.2.2.tar.gz (55 kB)
2022-07-27T02:45:59,001   Added ilus==1.2.2 from https://files.pythonhosted.org/packages/33/d9/1e1d7c5aa517e4648fbdfc9be2752fbf2424608e134845637241833f4f58/ilus-1.2.2.tar.gz#sha256=69a9f761e78f225a10383cdd4e2b0d3e75ef348b7d77621492f026bfa3ad3f15 to build tracker '/tmp/pip-build-tracker-gwof5syj'
2022-07-27T02:45:59,005   Running setup.py (path:/tmp/pip-wheel-bpvok1v6/ilus_083661f6489648f1b6778ac31053dbf9/setup.py) egg_info for package ilus
2022-07-27T02:45:59,006   Created temporary directory: /tmp/pip-pip-egg-info-u487tykb
2022-07-27T02:45:59,006   Preparing metadata (setup.py): started
2022-07-27T02:45:59,009   Running command python setup.py egg_info
2022-07-27T02:46:07,246   running egg_info
2022-07-27T02:46:07,251   creating /tmp/pip-pip-egg-info-u487tykb/ilus.egg-info
2022-07-27T02:46:07,990   writing /tmp/pip-pip-egg-info-u487tykb/ilus.egg-info/PKG-INFO
2022-07-27T02:46:08,582   writing dependency_links to /tmp/pip-pip-egg-info-u487tykb/ilus.egg-info/dependency_links.txt
2022-07-27T02:46:10,372   writing entry points to /tmp/pip-pip-egg-info-u487tykb/ilus.egg-info/entry_points.txt
2022-07-27T02:46:11,561   writing requirements to /tmp/pip-pip-egg-info-u487tykb/ilus.egg-info/requires.txt
2022-07-27T02:46:12,150   writing top-level names to /tmp/pip-pip-egg-info-u487tykb/ilus.egg-info/top_level.txt
2022-07-27T02:46:12,153   writing manifest file '/tmp/pip-pip-egg-info-u487tykb/ilus.egg-info/SOURCES.txt'
2022-07-27T02:46:13,202   reading manifest file '/tmp/pip-pip-egg-info-u487tykb/ilus.egg-info/SOURCES.txt'
2022-07-27T02:46:13,205   adding license file 'LICENSE'
2022-07-27T02:46:13,212   writing manifest file '/tmp/pip-pip-egg-info-u487tykb/ilus.egg-info/SOURCES.txt'
2022-07-27T02:46:13,433   Preparing metadata (setup.py): finished with status 'done'
2022-07-27T02:46:13,449   Source in /tmp/pip-wheel-bpvok1v6/ilus_083661f6489648f1b6778ac31053dbf9 has version 1.2.2, which satisfies requirement ilus==1.2.2 from https://files.pythonhosted.org/packages/33/d9/1e1d7c5aa517e4648fbdfc9be2752fbf2424608e134845637241833f4f58/ilus-1.2.2.tar.gz#sha256=69a9f761e78f225a10383cdd4e2b0d3e75ef348b7d77621492f026bfa3ad3f15
2022-07-27T02:46:13,451   Removed ilus==1.2.2 from https://files.pythonhosted.org/packages/33/d9/1e1d7c5aa517e4648fbdfc9be2752fbf2424608e134845637241833f4f58/ilus-1.2.2.tar.gz#sha256=69a9f761e78f225a10383cdd4e2b0d3e75ef348b7d77621492f026bfa3ad3f15 from build tracker '/tmp/pip-build-tracker-gwof5syj'
2022-07-27T02:46:13,466 Created temporary directory: /tmp/pip-unpack-fw2e9tty
2022-07-27T02:46:13,467 Building wheels for collected packages: ilus
2022-07-27T02:46:13,477   Created temporary directory: /tmp/pip-wheel-oajnioe7
2022-07-27T02:46:13,477   Building wheel for ilus (setup.py): started
2022-07-27T02:46:13,480   Destination directory: /tmp/pip-wheel-oajnioe7
2022-07-27T02:46:13,480   Running command python setup.py bdist_wheel
2022-07-27T02:46:21,270   running bdist_wheel
2022-07-27T02:46:21,898   running build
2022-07-27T02:46:21,898   running build_py
2022-07-27T02:46:22,630   creating build
2022-07-27T02:46:22,630   creating build/lib
2022-07-27T02:46:22,632   creating build/lib/ilus
2022-07-27T02:46:22,634   copying ilus/__init__.py -> build/lib/ilus
2022-07-27T02:46:22,637   copying ilus/utils.py -> build/lib/ilus
2022-07-27T02:46:22,642   copying ilus/log.py -> build/lib/ilus
2022-07-27T02:46:22,645   copying ilus/main.py -> build/lib/ilus
2022-07-27T02:46:22,651   creating build/lib/ilus/pipeline
2022-07-27T02:46:22,652   copying ilus/pipeline/__init__.py -> build/lib/ilus/pipeline
2022-07-27T02:46:22,656   copying ilus/pipeline/wgs.py -> build/lib/ilus/pipeline
2022-07-27T02:46:22,661   creating build/lib/ilus/launch
2022-07-27T02:46:22,663   copying ilus/launch/__init__.py -> build/lib/ilus/launch
2022-07-27T02:46:22,666   copying ilus/launch/do.py -> build/lib/ilus/launch
2022-07-27T02:46:22,670   copying ilus/launch/runfunction.py -> build/lib/ilus/launch
2022-07-27T02:46:22,676   creating build/lib/ilus/modules
2022-07-27T02:46:22,677   copying ilus/modules/__init__.py -> build/lib/ilus/modules
2022-07-27T02:46:22,682   creating build/lib/ilus/modules/variants
2022-07-27T02:46:22,683   copying ilus/modules/variants/__init__.py -> build/lib/ilus/modules/variants
2022-07-27T02:46:22,686   copying ilus/modules/variants/gatk.py -> build/lib/ilus/modules/variants
2022-07-27T02:46:22,693   creating build/lib/ilus/modules/ngsaligner
2022-07-27T02:46:22,694   copying ilus/modules/ngsaligner/__init__.py -> build/lib/ilus/modules/ngsaligner
2022-07-27T02:46:22,697   copying ilus/modules/ngsaligner/bwa.py -> build/lib/ilus/modules/ngsaligner
2022-07-27T02:46:22,702   creating build/lib/ilus/modules/summary
2022-07-27T02:46:22,704   copying ilus/modules/summary/__init__.py -> build/lib/ilus/modules/summary
2022-07-27T02:46:22,707   copying ilus/modules/summary/bam.py -> build/lib/ilus/modules/summary
2022-07-27T02:46:22,712   creating build/lib/ilus/modules/vcf
2022-07-27T02:46:22,714   copying ilus/modules/vcf/bcftools.py -> build/lib/ilus/modules/vcf
2022-07-27T02:46:22,717   copying ilus/modules/vcf/__init__.py -> build/lib/ilus/modules/vcf
2022-07-27T02:46:22,720   running egg_info
2022-07-27T02:46:24,192   writing ilus.egg-info/PKG-INFO
2022-07-27T02:46:24,783   writing dependency_links to ilus.egg-info/dependency_links.txt
2022-07-27T02:46:26,545   writing entry points to ilus.egg-info/entry_points.txt
2022-07-27T02:46:27,721   writing requirements to ilus.egg-info/requires.txt
2022-07-27T02:46:28,312   writing top-level names to ilus.egg-info/top_level.txt
2022-07-27T02:46:28,463   reading manifest file 'ilus.egg-info/SOURCES.txt'
2022-07-27T02:46:28,467   adding license file 'LICENSE'
2022-07-27T02:46:28,473   writing manifest file 'ilus.egg-info/SOURCES.txt'
2022-07-27T02:46:29,216   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-07-27T02:46:29,216     setuptools.SetuptoolsDeprecationWarning,
2022-07-27T02:46:29,945   installing to build/bdist.linux-armv7l/wheel
2022-07-27T02:46:29,945   running install
2022-07-27T02:46:30,007   running install_lib
2022-07-27T02:46:30,735   creating build/bdist.linux-armv7l
2022-07-27T02:46:30,735   creating build/bdist.linux-armv7l/wheel
2022-07-27T02:46:30,739   creating build/bdist.linux-armv7l/wheel/ilus
2022-07-27T02:46:30,740   copying build/lib/ilus/__init__.py -> build/bdist.linux-armv7l/wheel/ilus
2022-07-27T02:46:30,743   copying build/lib/ilus/utils.py -> build/bdist.linux-armv7l/wheel/ilus
2022-07-27T02:46:30,747   copying build/lib/ilus/log.py -> build/bdist.linux-armv7l/wheel/ilus
2022-07-27T02:46:30,751   creating build/bdist.linux-armv7l/wheel/ilus/pipeline
2022-07-27T02:46:30,752   copying build/lib/ilus/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/pipeline
2022-07-27T02:46:30,755   copying build/lib/ilus/pipeline/wgs.py -> build/bdist.linux-armv7l/wheel/ilus/pipeline
2022-07-27T02:46:30,760   creating build/bdist.linux-armv7l/wheel/ilus/launch
2022-07-27T02:46:30,761   copying build/lib/ilus/launch/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/launch
2022-07-27T02:46:30,764   copying build/lib/ilus/launch/do.py -> build/bdist.linux-armv7l/wheel/ilus/launch
2022-07-27T02:46:30,767   copying build/lib/ilus/launch/runfunction.py -> build/bdist.linux-armv7l/wheel/ilus/launch
2022-07-27T02:46:30,773   creating build/bdist.linux-armv7l/wheel/ilus/modules
2022-07-27T02:46:30,774   copying build/lib/ilus/modules/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules
2022-07-27T02:46:30,778   creating build/bdist.linux-armv7l/wheel/ilus/modules/variants
2022-07-27T02:46:30,779   copying build/lib/ilus/modules/variants/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/variants
2022-07-27T02:46:30,785   copying build/lib/ilus/modules/variants/gatk.py -> build/bdist.linux-armv7l/wheel/ilus/modules/variants
2022-07-27T02:46:30,790   creating build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2022-07-27T02:46:30,792   copying build/lib/ilus/modules/ngsaligner/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2022-07-27T02:46:30,795   copying build/lib/ilus/modules/ngsaligner/bwa.py -> build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2022-07-27T02:46:30,799   creating build/bdist.linux-armv7l/wheel/ilus/modules/summary
2022-07-27T02:46:30,800   copying build/lib/ilus/modules/summary/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/summary
2022-07-27T02:46:30,803   copying build/lib/ilus/modules/summary/bam.py -> build/bdist.linux-armv7l/wheel/ilus/modules/summary
2022-07-27T02:46:30,807   creating build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2022-07-27T02:46:30,809   copying build/lib/ilus/modules/vcf/bcftools.py -> build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2022-07-27T02:46:30,812   copying build/lib/ilus/modules/vcf/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2022-07-27T02:46:30,815   copying build/lib/ilus/main.py -> build/bdist.linux-armv7l/wheel/ilus
2022-07-27T02:46:30,819   running install_egg_info
2022-07-27T02:46:31,556   Copying ilus.egg-info to build/bdist.linux-armv7l/wheel/ilus-1.2.2-py3.7.egg-info
2022-07-27T02:46:31,582   running install_scripts
2022-07-27T02:46:31,739   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-07-27T02:46:31,750   creating build/bdist.linux-armv7l/wheel/ilus-1.2.2.dist-info/WHEEL
2022-07-27T02:46:31,755   creating '/tmp/pip-wheel-oajnioe7/ilus-1.2.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-07-27T02:46:31,759   adding 'ilus/__init__.py'
2022-07-27T02:46:31,762   adding 'ilus/log.py'
2022-07-27T02:46:31,765   adding 'ilus/main.py'
2022-07-27T02:46:31,768   adding 'ilus/utils.py'
2022-07-27T02:46:31,771   adding 'ilus/launch/__init__.py'
2022-07-27T02:46:31,774   adding 'ilus/launch/do.py'
2022-07-27T02:46:31,778   adding 'ilus/launch/runfunction.py'
2022-07-27T02:46:31,782   adding 'ilus/modules/__init__.py'
2022-07-27T02:46:31,785   adding 'ilus/modules/ngsaligner/__init__.py'
2022-07-27T02:46:31,787   adding 'ilus/modules/ngsaligner/bwa.py'
2022-07-27T02:46:31,790   adding 'ilus/modules/summary/__init__.py'
2022-07-27T02:46:31,793   adding 'ilus/modules/summary/bam.py'
2022-07-27T02:46:31,796   adding 'ilus/modules/variants/__init__.py'
2022-07-27T02:46:31,799   adding 'ilus/modules/variants/gatk.py'
2022-07-27T02:46:31,802   adding 'ilus/modules/vcf/__init__.py'
2022-07-27T02:46:31,804   adding 'ilus/modules/vcf/bcftools.py'
2022-07-27T02:46:31,807   adding 'ilus/pipeline/__init__.py'
2022-07-27T02:46:31,810   adding 'ilus/pipeline/wgs.py'
2022-07-27T02:46:31,827   adding 'ilus-1.2.2.dist-info/LICENSE'
2022-07-27T02:46:31,837   adding 'ilus-1.2.2.dist-info/METADATA'
2022-07-27T02:46:31,839   adding 'ilus-1.2.2.dist-info/WHEEL'
2022-07-27T02:46:31,841   adding 'ilus-1.2.2.dist-info/entry_points.txt'
2022-07-27T02:46:31,842   adding 'ilus-1.2.2.dist-info/top_level.txt'
2022-07-27T02:46:31,843   adding 'ilus-1.2.2.dist-info/RECORD'
2022-07-27T02:46:31,847   removing build/bdist.linux-armv7l/wheel
2022-07-27T02:46:32,114   Building wheel for ilus (setup.py): finished with status 'done'
2022-07-27T02:46:32,122   Created wheel for ilus: filename=ilus-1.2.2-py3-none-any.whl size=40126 sha256=57d5cc7a4de501b9759687f303a8ce24dee56a6bf3f469cdf8f34eedfbd5e3d6
2022-07-27T02:46:32,124   Stored in directory: /tmp/pip-ephem-wheel-cache-oh24nfdd/wheels/3f/f4/d8/3bcca8763f04c5774550ce632f0af3b9638918f18ab912e45e
2022-07-27T02:46:32,157 Successfully built ilus
2022-07-27T02:46:32,166 Removed build tracker: '/tmp/pip-build-tracker-gwof5syj'