2022-07-28T17:26:33,768 Created temporary directory: /tmp/pip-ephem-wheel-cache-oxnl8ard
2022-07-28T17:26:33,774 Created temporary directory: /tmp/pip-build-tracker-b6kgqlwb
2022-07-28T17:26:33,774 Initialized build tracking at /tmp/pip-build-tracker-b6kgqlwb
2022-07-28T17:26:33,775 Created build tracker: /tmp/pip-build-tracker-b6kgqlwb
2022-07-28T17:26:33,775 Entered build tracker: /tmp/pip-build-tracker-b6kgqlwb
2022-07-28T17:26:33,776 Created temporary directory: /tmp/pip-wheel-rei5oqrf
2022-07-28T17:26:33,847 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-07-28T17:26:33,855 2 location(s) to search for versions of liftofftools:
2022-07-28T17:26:33,855 * https://pypi.org/simple/liftofftools/
2022-07-28T17:26:33,855 * https://www.piwheels.org/simple/liftofftools/
2022-07-28T17:26:33,856 Fetching project page and analyzing links: https://pypi.org/simple/liftofftools/
2022-07-28T17:26:33,857 Getting page https://pypi.org/simple/liftofftools/
2022-07-28T17:26:33,860 Found index url https://pypi.org/simple
2022-07-28T17:26:34,051   Found link https://files.pythonhosted.org/packages/64/e4/dbd9d0b263ed1cb3125bc8710bd6257bea8a5e408b63d24d93cc6a96f0a4/LiftoffTools-0.3.0.tar.gz#sha256=f36d1eba4cbe3c9cd4ecd568fa9eabb6cbea1c17a19a00db1b79f66a6b276feb (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.3.0
2022-07-28T17:26:34,053   Found link https://files.pythonhosted.org/packages/5b/b0/05822a17173cebb88ff33b76ebe9cc84b6086432abb91824d6c8ba5a649e/LiftoffTools-0.3.1.tar.gz#sha256=91c82cca5674cdb46025aa0defb966f855deeaa947dc5bbee3eb5201b589c278 (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.3.1
2022-07-28T17:26:34,054   Found link https://files.pythonhosted.org/packages/ea/78/76f1304aa56278bdf985dc5bd49c89f213ac2c647275feaef380608f12fa/LiftoffTools-0.4.tar.gz#sha256=4d153344238e27048447d726623ac6f9e2adcb54451b619ac5c8673dbaba64c4 (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.4
2022-07-28T17:26:34,056   Found link https://files.pythonhosted.org/packages/7d/d4/e08037d9ea4722890c29741846507b86ee5a222cfac388b4298300c97e3c/LiftoffTools-0.4.1.tar.gz#sha256=1a74f60f99b5c0395d032504704713a9cc9e0805b74d8b1e2beac4a074d04357 (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.4.1
2022-07-28T17:26:34,057 Fetching project page and analyzing links: https://www.piwheels.org/simple/liftofftools/
2022-07-28T17:26:34,057 Getting page https://www.piwheels.org/simple/liftofftools/
2022-07-28T17:26:34,060 Found index url https://www.piwheels.org/simple
2022-07-28T17:26:34,287 Skipping link: not a file: https://www.piwheels.org/simple/liftofftools/
2022-07-28T17:26:34,288 Skipping link: not a file: https://pypi.org/simple/liftofftools/
2022-07-28T17:26:34,323 Given no hashes to check 1 links for project 'liftofftools': discarding no candidates
2022-07-28T17:26:34,354 Collecting liftofftools==0.3.0
2022-07-28T17:26:34,358   Created temporary directory: /tmp/pip-unpack-y8s14i2c
2022-07-28T17:26:34,604   Downloading LiftoffTools-0.3.0.tar.gz (16 kB)
2022-07-28T17:26:34,734   Added liftofftools==0.3.0 from https://files.pythonhosted.org/packages/64/e4/dbd9d0b263ed1cb3125bc8710bd6257bea8a5e408b63d24d93cc6a96f0a4/LiftoffTools-0.3.0.tar.gz#sha256=f36d1eba4cbe3c9cd4ecd568fa9eabb6cbea1c17a19a00db1b79f66a6b276feb to build tracker '/tmp/pip-build-tracker-b6kgqlwb'
2022-07-28T17:26:34,737   Running setup.py (path:/tmp/pip-wheel-rei5oqrf/liftofftools_6c75d0726f1e449e92a4ea433f36abad/setup.py) egg_info for package liftofftools
2022-07-28T17:26:34,738   Created temporary directory: /tmp/pip-pip-egg-info-6l6nc4pq
2022-07-28T17:26:34,739   Preparing metadata (setup.py): started
2022-07-28T17:26:34,741   Running command python setup.py egg_info
2022-07-28T17:26:43,034   running egg_info
2022-07-28T17:26:43,038   creating /tmp/pip-pip-egg-info-6l6nc4pq/LiftoffTools.egg-info
2022-07-28T17:26:43,770   writing /tmp/pip-pip-egg-info-6l6nc4pq/LiftoffTools.egg-info/PKG-INFO
2022-07-28T17:26:44,367   writing dependency_links to /tmp/pip-pip-egg-info-6l6nc4pq/LiftoffTools.egg-info/dependency_links.txt
2022-07-28T17:26:46,154   writing entry points to /tmp/pip-pip-egg-info-6l6nc4pq/LiftoffTools.egg-info/entry_points.txt
2022-07-28T17:26:47,344   writing requirements to /tmp/pip-pip-egg-info-6l6nc4pq/LiftoffTools.egg-info/requires.txt
2022-07-28T17:26:47,943   writing top-level names to /tmp/pip-pip-egg-info-6l6nc4pq/LiftoffTools.egg-info/top_level.txt
2022-07-28T17:26:47,945   writing manifest file '/tmp/pip-pip-egg-info-6l6nc4pq/LiftoffTools.egg-info/SOURCES.txt'
2022-07-28T17:26:48,977   reading manifest file '/tmp/pip-pip-egg-info-6l6nc4pq/LiftoffTools.egg-info/SOURCES.txt'
2022-07-28T17:26:48,985   writing manifest file '/tmp/pip-pip-egg-info-6l6nc4pq/LiftoffTools.egg-info/SOURCES.txt'
2022-07-28T17:26:49,205   Preparing metadata (setup.py): finished with status 'done'
2022-07-28T17:26:49,216   Source in /tmp/pip-wheel-rei5oqrf/liftofftools_6c75d0726f1e449e92a4ea433f36abad has version 0.3.0, which satisfies requirement liftofftools==0.3.0 from https://files.pythonhosted.org/packages/64/e4/dbd9d0b263ed1cb3125bc8710bd6257bea8a5e408b63d24d93cc6a96f0a4/LiftoffTools-0.3.0.tar.gz#sha256=f36d1eba4cbe3c9cd4ecd568fa9eabb6cbea1c17a19a00db1b79f66a6b276feb
2022-07-28T17:26:49,218   Removed liftofftools==0.3.0 from https://files.pythonhosted.org/packages/64/e4/dbd9d0b263ed1cb3125bc8710bd6257bea8a5e408b63d24d93cc6a96f0a4/LiftoffTools-0.3.0.tar.gz#sha256=f36d1eba4cbe3c9cd4ecd568fa9eabb6cbea1c17a19a00db1b79f66a6b276feb from build tracker '/tmp/pip-build-tracker-b6kgqlwb'
2022-07-28T17:26:49,230 Created temporary directory: /tmp/pip-unpack-f69j46iz
2022-07-28T17:26:49,231 Building wheels for collected packages: liftofftools
2022-07-28T17:26:49,241   Created temporary directory: /tmp/pip-wheel-hzzx7mck
2022-07-28T17:26:49,242   Building wheel for liftofftools (setup.py): started
2022-07-28T17:26:49,244   Destination directory: /tmp/pip-wheel-hzzx7mck
2022-07-28T17:26:49,244   Running command python setup.py bdist_wheel
2022-07-28T17:26:56,903   running bdist_wheel
2022-07-28T17:26:57,325   running build
2022-07-28T17:26:57,326   running build_py
2022-07-28T17:26:58,066   creating build
2022-07-28T17:26:58,067   creating build/lib
2022-07-28T17:26:58,068   creating build/lib/liftofftools
2022-07-28T17:26:58,071   copying liftofftools/sequences.py -> build/lib/liftofftools
2022-07-28T17:26:58,075   copying liftofftools/build_database.py -> build/lib/liftofftools
2022-07-28T17:26:58,078   copying liftofftools/__init__.py -> build/lib/liftofftools
2022-07-28T17:26:58,082   copying liftofftools/cli_arguments.py -> build/lib/liftofftools
2022-07-28T17:26:58,086   copying liftofftools/annotation.py -> build/lib/liftofftools
2022-07-28T17:26:58,090   copying liftofftools/subprocesses.py -> build/lib/liftofftools
2022-07-28T17:26:58,094   copying liftofftools/alignment.py -> build/lib/liftofftools
2022-07-28T17:26:58,097   copying liftofftools/test_parasail.py -> build/lib/liftofftools
2022-07-28T17:26:58,101   copying liftofftools/liftofftools.py -> build/lib/liftofftools
2022-07-28T17:26:58,104   copying liftofftools/filepaths.py -> build/lib/liftofftools
2022-07-28T17:26:58,109   creating build/lib/liftofftools/cluster_analysis
2022-07-28T17:26:58,111   copying liftofftools/cluster_analysis/analyze_clusters.py -> build/lib/liftofftools/cluster_analysis
2022-07-28T17:26:58,116   copying liftofftools/cluster_analysis/__init__.py -> build/lib/liftofftools/cluster_analysis
2022-07-28T17:26:58,119   copying liftofftools/cluster_analysis/mmseqs_workflow.py -> build/lib/liftofftools/cluster_analysis
2022-07-28T17:26:58,123   copying liftofftools/cluster_analysis/clusters.py -> build/lib/liftofftools/cluster_analysis
2022-07-28T17:26:58,127   creating build/lib/liftofftools/variants
2022-07-28T17:26:58,129   copying liftofftools/variants/__init__.py -> build/lib/liftofftools/variants
2022-07-28T17:26:58,132   copying liftofftools/variants/variants.py -> build/lib/liftofftools/variants
2022-07-28T17:26:58,137   creating build/lib/liftofftools/synteny
2022-07-28T17:26:58,138   copying liftofftools/synteny/__init__.py -> build/lib/liftofftools/synteny
2022-07-28T17:26:58,141   copying liftofftools/synteny/synteny.py -> build/lib/liftofftools/synteny
2022-07-28T17:26:58,145   copying liftofftools/synteny/plot_gene_order.py -> build/lib/liftofftools/synteny
2022-07-28T17:26:58,889   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-07-28T17:26:58,889     setuptools.SetuptoolsDeprecationWarning,
2022-07-28T17:26:59,625   installing to build/bdist.linux-armv7l/wheel
2022-07-28T17:26:59,625   running install
2022-07-28T17:26:59,687   running install_lib
2022-07-28T17:27:00,425   creating build/bdist.linux-armv7l
2022-07-28T17:27:00,425   creating build/bdist.linux-armv7l/wheel
2022-07-28T17:27:00,429   creating build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T17:27:00,432   creating build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-28T17:27:00,434   copying build/lib/liftofftools/cluster_analysis/analyze_clusters.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-28T17:27:00,439   copying build/lib/liftofftools/cluster_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-28T17:27:00,443   copying build/lib/liftofftools/cluster_analysis/mmseqs_workflow.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-28T17:27:00,446   copying build/lib/liftofftools/cluster_analysis/clusters.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-28T17:27:00,450   copying build/lib/liftofftools/sequences.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T17:27:00,453   copying build/lib/liftofftools/build_database.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T17:27:00,457   copying build/lib/liftofftools/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T17:27:00,461   copying build/lib/liftofftools/cli_arguments.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T17:27:00,465   creating build/bdist.linux-armv7l/wheel/liftofftools/variants
2022-07-28T17:27:00,467   copying build/lib/liftofftools/variants/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/variants
2022-07-28T17:27:00,471   copying build/lib/liftofftools/variants/variants.py -> build/bdist.linux-armv7l/wheel/liftofftools/variants
2022-07-28T17:27:00,474   copying build/lib/liftofftools/annotation.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T17:27:00,479   copying build/lib/liftofftools/subprocesses.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T17:27:00,483   creating build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-07-28T17:27:00,485   copying build/lib/liftofftools/synteny/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-07-28T17:27:00,489   copying build/lib/liftofftools/synteny/synteny.py -> build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-07-28T17:27:00,493   copying build/lib/liftofftools/synteny/plot_gene_order.py -> build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-07-28T17:27:00,496   copying build/lib/liftofftools/alignment.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T17:27:00,500   copying build/lib/liftofftools/test_parasail.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T17:27:00,503   copying build/lib/liftofftools/liftofftools.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T17:27:00,506   copying build/lib/liftofftools/filepaths.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T17:27:00,509   running install_egg_info
2022-07-28T17:27:02,007   running egg_info
2022-07-28T17:27:02,737   writing LiftoffTools.egg-info/PKG-INFO
2022-07-28T17:27:03,331   writing dependency_links to LiftoffTools.egg-info/dependency_links.txt
2022-07-28T17:27:05,110   writing entry points to LiftoffTools.egg-info/entry_points.txt
2022-07-28T17:27:06,345   writing requirements to LiftoffTools.egg-info/requires.txt
2022-07-28T17:27:06,939   writing top-level names to LiftoffTools.egg-info/top_level.txt
2022-07-28T17:27:07,092   reading manifest file 'LiftoffTools.egg-info/SOURCES.txt'
2022-07-28T17:27:07,103   writing manifest file 'LiftoffTools.egg-info/SOURCES.txt'
2022-07-28T17:27:07,106   Copying LiftoffTools.egg-info to build/bdist.linux-armv7l/wheel/LiftoffTools-0.3.0-py3.7.egg-info
2022-07-28T17:27:07,130   running install_scripts
2022-07-28T17:27:07,299   creating build/bdist.linux-armv7l/wheel/LiftoffTools-0.3.0.dist-info/WHEEL
2022-07-28T17:27:07,303   creating '/tmp/pip-wheel-hzzx7mck/LiftoffTools-0.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-07-28T17:27:07,310   adding 'liftofftools/__init__.py'
2022-07-28T17:27:07,313   adding 'liftofftools/alignment.py'
2022-07-28T17:27:07,316   adding 'liftofftools/annotation.py'
2022-07-28T17:27:07,318   adding 'liftofftools/build_database.py'
2022-07-28T17:27:07,321   adding 'liftofftools/cli_arguments.py'
2022-07-28T17:27:07,323   adding 'liftofftools/filepaths.py'
2022-07-28T17:27:07,326   adding 'liftofftools/liftofftools.py'
2022-07-28T17:27:07,329   adding 'liftofftools/sequences.py'
2022-07-28T17:27:07,331   adding 'liftofftools/subprocesses.py'
2022-07-28T17:27:07,333   adding 'liftofftools/test_parasail.py'
2022-07-28T17:27:07,337   adding 'liftofftools/cluster_analysis/__init__.py'
2022-07-28T17:27:07,340   adding 'liftofftools/cluster_analysis/analyze_clusters.py'
2022-07-28T17:27:07,343   adding 'liftofftools/cluster_analysis/clusters.py'
2022-07-28T17:27:07,345   adding 'liftofftools/cluster_analysis/mmseqs_workflow.py'
2022-07-28T17:27:07,349   adding 'liftofftools/synteny/__init__.py'
2022-07-28T17:27:07,352   adding 'liftofftools/synteny/plot_gene_order.py'
2022-07-28T17:27:07,355   adding 'liftofftools/synteny/synteny.py'
2022-07-28T17:27:07,358   adding 'liftofftools/variants/__init__.py'
2022-07-28T17:27:07,361   adding 'liftofftools/variants/variants.py'
2022-07-28T17:27:07,363   adding 'LiftoffTools-0.3.0.dist-info/METADATA'
2022-07-28T17:27:07,365   adding 'LiftoffTools-0.3.0.dist-info/WHEEL'
2022-07-28T17:27:07,367   adding 'LiftoffTools-0.3.0.dist-info/entry_points.txt'
2022-07-28T17:27:07,368   adding 'LiftoffTools-0.3.0.dist-info/top_level.txt'
2022-07-28T17:27:07,370   adding 'LiftoffTools-0.3.0.dist-info/RECORD'
2022-07-28T17:27:07,373   removing build/bdist.linux-armv7l/wheel
2022-07-28T17:27:07,626   Building wheel for liftofftools (setup.py): finished with status 'done'
2022-07-28T17:27:07,634   Created wheel for liftofftools: filename=LiftoffTools-0.3.0-py3-none-any.whl size=18910 sha256=feeceae87ffc8bdc4077f56d6f9a59de79f2e5bdccea7c71ad41e890991a3797
2022-07-28T17:27:07,636   Stored in directory: /tmp/pip-ephem-wheel-cache-oxnl8ard/wheels/e4/f4/49/d9ac5e776eca78fd1b95b96f1cbdbcb55b312d88e2515dcd94
2022-07-28T17:27:07,659 Successfully built liftofftools
2022-07-28T17:27:07,668 Removed build tracker: '/tmp/pip-build-tracker-b6kgqlwb'