2022-07-28T18:05:37,845 Created temporary directory: /tmp/pip-ephem-wheel-cache-6o0s6ptq
2022-07-28T18:05:37,851 Created temporary directory: /tmp/pip-build-tracker-5f26gcye
2022-07-28T18:05:37,851 Initialized build tracking at /tmp/pip-build-tracker-5f26gcye
2022-07-28T18:05:37,852 Created build tracker: /tmp/pip-build-tracker-5f26gcye
2022-07-28T18:05:37,852 Entered build tracker: /tmp/pip-build-tracker-5f26gcye
2022-07-28T18:05:37,855 Created temporary directory: /tmp/pip-wheel-yz3hmh0n
2022-07-28T18:05:37,918 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-07-28T18:05:37,926 2 location(s) to search for versions of liftofftools:
2022-07-28T18:05:37,926 * https://pypi.org/simple/liftofftools/
2022-07-28T18:05:37,926 * https://www.piwheels.org/simple/liftofftools/
2022-07-28T18:05:37,927 Fetching project page and analyzing links: https://pypi.org/simple/liftofftools/
2022-07-28T18:05:37,929 Getting page https://pypi.org/simple/liftofftools/
2022-07-28T18:05:37,932 Found index url https://pypi.org/simple
2022-07-28T18:05:38,042   Found link https://files.pythonhosted.org/packages/64/e4/dbd9d0b263ed1cb3125bc8710bd6257bea8a5e408b63d24d93cc6a96f0a4/LiftoffTools-0.3.0.tar.gz#sha256=f36d1eba4cbe3c9cd4ecd568fa9eabb6cbea1c17a19a00db1b79f66a6b276feb (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.3.0
2022-07-28T18:05:38,044   Found link https://files.pythonhosted.org/packages/5b/b0/05822a17173cebb88ff33b76ebe9cc84b6086432abb91824d6c8ba5a649e/LiftoffTools-0.3.1.tar.gz#sha256=91c82cca5674cdb46025aa0defb966f855deeaa947dc5bbee3eb5201b589c278 (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.3.1
2022-07-28T18:05:38,045   Found link https://files.pythonhosted.org/packages/ea/78/76f1304aa56278bdf985dc5bd49c89f213ac2c647275feaef380608f12fa/LiftoffTools-0.4.tar.gz#sha256=4d153344238e27048447d726623ac6f9e2adcb54451b619ac5c8673dbaba64c4 (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.4
2022-07-28T18:05:38,046   Found link https://files.pythonhosted.org/packages/7d/d4/e08037d9ea4722890c29741846507b86ee5a222cfac388b4298300c97e3c/LiftoffTools-0.4.1.tar.gz#sha256=1a74f60f99b5c0395d032504704713a9cc9e0805b74d8b1e2beac4a074d04357 (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.4.1
2022-07-28T18:05:38,047 Fetching project page and analyzing links: https://www.piwheels.org/simple/liftofftools/
2022-07-28T18:05:38,048 Getting page https://www.piwheels.org/simple/liftofftools/
2022-07-28T18:05:38,050 Found index url https://www.piwheels.org/simple
2022-07-28T18:05:38,252   Skipping link: No binaries permitted for liftofftools: https://www.piwheels.org/simple/liftofftools/LiftoffTools-0.3.0-py3-none-any.whl#sha256=feeceae87ffc8bdc4077f56d6f9a59de79f2e5bdccea7c71ad41e890991a3797 (from https://www.piwheels.org/simple/liftofftools/) (requires-python:>=3.6)
2022-07-28T18:05:38,252 Skipping link: not a file: https://www.piwheels.org/simple/liftofftools/
2022-07-28T18:05:38,253 Skipping link: not a file: https://pypi.org/simple/liftofftools/
2022-07-28T18:05:38,287 Given no hashes to check 1 links for project 'liftofftools': discarding no candidates
2022-07-28T18:05:38,319 Collecting liftofftools==0.3.1
2022-07-28T18:05:38,323   Created temporary directory: /tmp/pip-unpack-mtqzvc6k
2022-07-28T18:05:38,558   Downloading LiftoffTools-0.3.1.tar.gz (15 kB)
2022-07-28T18:05:38,681   Added liftofftools==0.3.1 from https://files.pythonhosted.org/packages/5b/b0/05822a17173cebb88ff33b76ebe9cc84b6086432abb91824d6c8ba5a649e/LiftoffTools-0.3.1.tar.gz#sha256=91c82cca5674cdb46025aa0defb966f855deeaa947dc5bbee3eb5201b589c278 to build tracker '/tmp/pip-build-tracker-5f26gcye'
2022-07-28T18:05:38,684   Running setup.py (path:/tmp/pip-wheel-yz3hmh0n/liftofftools_c65def0f6c2a43708cfc1b75ebd9d859/setup.py) egg_info for package liftofftools
2022-07-28T18:05:38,685   Created temporary directory: /tmp/pip-pip-egg-info-iqmv3amd
2022-07-28T18:05:38,685   Preparing metadata (setup.py): started
2022-07-28T18:05:38,687   Running command python setup.py egg_info
2022-07-28T18:05:46,766   running egg_info
2022-07-28T18:05:46,770   creating /tmp/pip-pip-egg-info-iqmv3amd/LiftoffTools.egg-info
2022-07-28T18:05:47,488   writing /tmp/pip-pip-egg-info-iqmv3amd/LiftoffTools.egg-info/PKG-INFO
2022-07-28T18:05:48,072   writing dependency_links to /tmp/pip-pip-egg-info-iqmv3amd/LiftoffTools.egg-info/dependency_links.txt
2022-07-28T18:05:49,812   writing entry points to /tmp/pip-pip-egg-info-iqmv3amd/LiftoffTools.egg-info/entry_points.txt
2022-07-28T18:05:50,972   writing requirements to /tmp/pip-pip-egg-info-iqmv3amd/LiftoffTools.egg-info/requires.txt
2022-07-28T18:05:51,556   writing top-level names to /tmp/pip-pip-egg-info-iqmv3amd/LiftoffTools.egg-info/top_level.txt
2022-07-28T18:05:51,559   writing manifest file '/tmp/pip-pip-egg-info-iqmv3amd/LiftoffTools.egg-info/SOURCES.txt'
2022-07-28T18:05:52,579   reading manifest file '/tmp/pip-pip-egg-info-iqmv3amd/LiftoffTools.egg-info/SOURCES.txt'
2022-07-28T18:05:52,589   writing manifest file '/tmp/pip-pip-egg-info-iqmv3amd/LiftoffTools.egg-info/SOURCES.txt'
2022-07-28T18:05:52,810   Preparing metadata (setup.py): finished with status 'done'
2022-07-28T18:05:52,820   Source in /tmp/pip-wheel-yz3hmh0n/liftofftools_c65def0f6c2a43708cfc1b75ebd9d859 has version 0.3.1, which satisfies requirement liftofftools==0.3.1 from https://files.pythonhosted.org/packages/5b/b0/05822a17173cebb88ff33b76ebe9cc84b6086432abb91824d6c8ba5a649e/LiftoffTools-0.3.1.tar.gz#sha256=91c82cca5674cdb46025aa0defb966f855deeaa947dc5bbee3eb5201b589c278
2022-07-28T18:05:52,822   Removed liftofftools==0.3.1 from https://files.pythonhosted.org/packages/5b/b0/05822a17173cebb88ff33b76ebe9cc84b6086432abb91824d6c8ba5a649e/LiftoffTools-0.3.1.tar.gz#sha256=91c82cca5674cdb46025aa0defb966f855deeaa947dc5bbee3eb5201b589c278 from build tracker '/tmp/pip-build-tracker-5f26gcye'
2022-07-28T18:05:52,834 Created temporary directory: /tmp/pip-unpack-qwdchb1p
2022-07-28T18:05:52,835 Building wheels for collected packages: liftofftools
2022-07-28T18:05:52,845   Created temporary directory: /tmp/pip-wheel-w183sp8b
2022-07-28T18:05:52,846   Building wheel for liftofftools (setup.py): started
2022-07-28T18:05:52,848   Destination directory: /tmp/pip-wheel-w183sp8b
2022-07-28T18:05:52,848   Running command python setup.py bdist_wheel
2022-07-28T18:06:00,463   running bdist_wheel
2022-07-28T18:06:00,875   running build
2022-07-28T18:06:00,875   running build_py
2022-07-28T18:06:01,604   creating build
2022-07-28T18:06:01,605   creating build/lib
2022-07-28T18:06:01,606   creating build/lib/liftofftools
2022-07-28T18:06:01,608   copying liftofftools/sequences.py -> build/lib/liftofftools
2022-07-28T18:06:01,612   copying liftofftools/build_database.py -> build/lib/liftofftools
2022-07-28T18:06:01,615   copying liftofftools/__init__.py -> build/lib/liftofftools
2022-07-28T18:06:01,619   copying liftofftools/cli_arguments.py -> build/lib/liftofftools
2022-07-28T18:06:01,622   copying liftofftools/annotation.py -> build/lib/liftofftools
2022-07-28T18:06:01,626   copying liftofftools/subprocesses.py -> build/lib/liftofftools
2022-07-28T18:06:01,630   copying liftofftools/alignment.py -> build/lib/liftofftools
2022-07-28T18:06:01,633   copying liftofftools/liftofftools.py -> build/lib/liftofftools
2022-07-28T18:06:01,637   copying liftofftools/filepaths.py -> build/lib/liftofftools
2022-07-28T18:06:01,642   creating build/lib/liftofftools/cluster_analysis
2022-07-28T18:06:01,644   copying liftofftools/cluster_analysis/analyze_clusters.py -> build/lib/liftofftools/cluster_analysis
2022-07-28T18:06:01,648   copying liftofftools/cluster_analysis/__init__.py -> build/lib/liftofftools/cluster_analysis
2022-07-28T18:06:01,652   copying liftofftools/cluster_analysis/mmseqs_workflow.py -> build/lib/liftofftools/cluster_analysis
2022-07-28T18:06:01,655   copying liftofftools/cluster_analysis/clusters.py -> build/lib/liftofftools/cluster_analysis
2022-07-28T18:06:01,660   creating build/lib/liftofftools/variants
2022-07-28T18:06:01,661   copying liftofftools/variants/__init__.py -> build/lib/liftofftools/variants
2022-07-28T18:06:01,665   copying liftofftools/variants/variants.py -> build/lib/liftofftools/variants
2022-07-28T18:06:01,670   creating build/lib/liftofftools/synteny
2022-07-28T18:06:01,671   copying liftofftools/synteny/__init__.py -> build/lib/liftofftools/synteny
2022-07-28T18:06:01,675   copying liftofftools/synteny/synteny.py -> build/lib/liftofftools/synteny
2022-07-28T18:06:01,680   copying liftofftools/synteny/plot_gene_order.py -> build/lib/liftofftools/synteny
2022-07-28T18:06:02,420   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-07-28T18:06:02,421     setuptools.SetuptoolsDeprecationWarning,
2022-07-28T18:06:03,144   installing to build/bdist.linux-armv7l/wheel
2022-07-28T18:06:03,145   running install
2022-07-28T18:06:03,205   running install_lib
2022-07-28T18:06:03,936   creating build/bdist.linux-armv7l
2022-07-28T18:06:03,937   creating build/bdist.linux-armv7l/wheel
2022-07-28T18:06:03,940   creating build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T18:06:03,944   creating build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-28T18:06:03,945   copying build/lib/liftofftools/cluster_analysis/analyze_clusters.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-28T18:06:03,950   copying build/lib/liftofftools/cluster_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-28T18:06:03,954   copying build/lib/liftofftools/cluster_analysis/mmseqs_workflow.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-28T18:06:03,957   copying build/lib/liftofftools/cluster_analysis/clusters.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-28T18:06:03,961   copying build/lib/liftofftools/sequences.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T18:06:03,965   copying build/lib/liftofftools/build_database.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T18:06:03,968   copying build/lib/liftofftools/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T18:06:03,972   copying build/lib/liftofftools/cli_arguments.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T18:06:03,976   creating build/bdist.linux-armv7l/wheel/liftofftools/variants
2022-07-28T18:06:03,978   copying build/lib/liftofftools/variants/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/variants
2022-07-28T18:06:03,981   copying build/lib/liftofftools/variants/variants.py -> build/bdist.linux-armv7l/wheel/liftofftools/variants
2022-07-28T18:06:03,984   copying build/lib/liftofftools/annotation.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T18:06:03,989   copying build/lib/liftofftools/subprocesses.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T18:06:03,993   creating build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-07-28T18:06:03,994   copying build/lib/liftofftools/synteny/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-07-28T18:06:03,998   copying build/lib/liftofftools/synteny/synteny.py -> build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-07-28T18:06:04,002   copying build/lib/liftofftools/synteny/plot_gene_order.py -> build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-07-28T18:06:04,006   copying build/lib/liftofftools/alignment.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T18:06:04,009   copying build/lib/liftofftools/liftofftools.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T18:06:04,012   copying build/lib/liftofftools/filepaths.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-28T18:06:04,015   running install_egg_info
2022-07-28T18:06:05,497   running egg_info
2022-07-28T18:06:06,223   writing LiftoffTools.egg-info/PKG-INFO
2022-07-28T18:06:06,809   writing dependency_links to LiftoffTools.egg-info/dependency_links.txt
2022-07-28T18:06:08,568   writing entry points to LiftoffTools.egg-info/entry_points.txt
2022-07-28T18:06:09,790   writing requirements to LiftoffTools.egg-info/requires.txt
2022-07-28T18:06:10,377   writing top-level names to LiftoffTools.egg-info/top_level.txt
2022-07-28T18:06:10,524   reading manifest file 'LiftoffTools.egg-info/SOURCES.txt'
2022-07-28T18:06:10,535   writing manifest file 'LiftoffTools.egg-info/SOURCES.txt'
2022-07-28T18:06:10,538   Copying LiftoffTools.egg-info to build/bdist.linux-armv7l/wheel/LiftoffTools-0.3.1-py3.7.egg-info
2022-07-28T18:06:10,561   running install_scripts
2022-07-28T18:06:10,727   creating build/bdist.linux-armv7l/wheel/LiftoffTools-0.3.1.dist-info/WHEEL
2022-07-28T18:06:10,732   creating '/tmp/pip-wheel-w183sp8b/LiftoffTools-0.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-07-28T18:06:10,739   adding 'liftofftools/__init__.py'
2022-07-28T18:06:10,741   adding 'liftofftools/alignment.py'
2022-07-28T18:06:10,744   adding 'liftofftools/annotation.py'
2022-07-28T18:06:10,746   adding 'liftofftools/build_database.py'
2022-07-28T18:06:10,749   adding 'liftofftools/cli_arguments.py'
2022-07-28T18:06:10,751   adding 'liftofftools/filepaths.py'
2022-07-28T18:06:10,754   adding 'liftofftools/liftofftools.py'
2022-07-28T18:06:10,756   adding 'liftofftools/sequences.py'
2022-07-28T18:06:10,759   adding 'liftofftools/subprocesses.py'
2022-07-28T18:06:10,762   adding 'liftofftools/cluster_analysis/__init__.py'
2022-07-28T18:06:10,765   adding 'liftofftools/cluster_analysis/analyze_clusters.py'
2022-07-28T18:06:10,768   adding 'liftofftools/cluster_analysis/clusters.py'
2022-07-28T18:06:10,771   adding 'liftofftools/cluster_analysis/mmseqs_workflow.py'
2022-07-28T18:06:10,774   adding 'liftofftools/synteny/__init__.py'
2022-07-28T18:06:10,776   adding 'liftofftools/synteny/plot_gene_order.py'
2022-07-28T18:06:10,779   adding 'liftofftools/synteny/synteny.py'
2022-07-28T18:06:10,782   adding 'liftofftools/variants/__init__.py'
2022-07-28T18:06:10,785   adding 'liftofftools/variants/variants.py'
2022-07-28T18:06:10,787   adding 'LiftoffTools-0.3.1.dist-info/METADATA'
2022-07-28T18:06:10,789   adding 'LiftoffTools-0.3.1.dist-info/WHEEL'
2022-07-28T18:06:10,790   adding 'LiftoffTools-0.3.1.dist-info/entry_points.txt'
2022-07-28T18:06:10,792   adding 'LiftoffTools-0.3.1.dist-info/top_level.txt'
2022-07-28T18:06:10,793   adding 'LiftoffTools-0.3.1.dist-info/RECORD'
2022-07-28T18:06:10,796   removing build/bdist.linux-armv7l/wheel
2022-07-28T18:06:11,048   Building wheel for liftofftools (setup.py): finished with status 'done'
2022-07-28T18:06:11,056   Created wheel for liftofftools: filename=LiftoffTools-0.3.1-py3-none-any.whl size=18254 sha256=27209759ac60f195ffa4379f4930b89fb066f41a7be568ed8418b24183e6ea82
2022-07-28T18:06:11,058   Stored in directory: /tmp/pip-ephem-wheel-cache-6o0s6ptq/wheels/30/3e/b1/b6f0dec5caa76c2bbba9403f54d60d0a33f0ca383a0054736b
2022-07-28T18:06:11,081 Successfully built liftofftools
2022-07-28T18:06:11,088 Removed build tracker: '/tmp/pip-build-tracker-5f26gcye'