2022-07-29T06:35:47,615 Created temporary directory: /tmp/pip-ephem-wheel-cache-gbuoj9o_
2022-07-29T06:35:47,621 Created temporary directory: /tmp/pip-build-tracker-ef78fs3g
2022-07-29T06:35:47,622 Initialized build tracking at /tmp/pip-build-tracker-ef78fs3g
2022-07-29T06:35:47,622 Created build tracker: /tmp/pip-build-tracker-ef78fs3g
2022-07-29T06:35:47,623 Entered build tracker: /tmp/pip-build-tracker-ef78fs3g
2022-07-29T06:35:47,624 Created temporary directory: /tmp/pip-wheel-s0gn3tas
2022-07-29T06:35:47,687 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-07-29T06:35:47,695 2 location(s) to search for versions of liftofftools:
2022-07-29T06:35:47,695 * https://pypi.org/simple/liftofftools/
2022-07-29T06:35:47,695 * https://www.piwheels.org/simple/liftofftools/
2022-07-29T06:35:47,696 Fetching project page and analyzing links: https://pypi.org/simple/liftofftools/
2022-07-29T06:35:47,697 Getting page https://pypi.org/simple/liftofftools/
2022-07-29T06:35:47,701 Found index url https://pypi.org/simple
2022-07-29T06:35:47,816   Found link https://files.pythonhosted.org/packages/64/e4/dbd9d0b263ed1cb3125bc8710bd6257bea8a5e408b63d24d93cc6a96f0a4/LiftoffTools-0.3.0.tar.gz#sha256=f36d1eba4cbe3c9cd4ecd568fa9eabb6cbea1c17a19a00db1b79f66a6b276feb (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.3.0
2022-07-29T06:35:47,818   Found link https://files.pythonhosted.org/packages/5b/b0/05822a17173cebb88ff33b76ebe9cc84b6086432abb91824d6c8ba5a649e/LiftoffTools-0.3.1.tar.gz#sha256=91c82cca5674cdb46025aa0defb966f855deeaa947dc5bbee3eb5201b589c278 (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.3.1
2022-07-29T06:35:47,819   Found link https://files.pythonhosted.org/packages/ea/78/76f1304aa56278bdf985dc5bd49c89f213ac2c647275feaef380608f12fa/LiftoffTools-0.4.tar.gz#sha256=4d153344238e27048447d726623ac6f9e2adcb54451b619ac5c8673dbaba64c4 (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.4
2022-07-29T06:35:47,821   Found link https://files.pythonhosted.org/packages/7d/d4/e08037d9ea4722890c29741846507b86ee5a222cfac388b4298300c97e3c/LiftoffTools-0.4.1.tar.gz#sha256=1a74f60f99b5c0395d032504704713a9cc9e0805b74d8b1e2beac4a074d04357 (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.4.1
2022-07-29T06:35:47,822 Fetching project page and analyzing links: https://www.piwheels.org/simple/liftofftools/
2022-07-29T06:35:47,822 Getting page https://www.piwheels.org/simple/liftofftools/
2022-07-29T06:35:47,824 Found index url https://www.piwheels.org/simple
2022-07-29T06:35:48,244   Skipping link: No binaries permitted for liftofftools: https://www.piwheels.org/simple/liftofftools/LiftoffTools-0.3.1-py3-none-any.whl#sha256=27209759ac60f195ffa4379f4930b89fb066f41a7be568ed8418b24183e6ea82 (from https://www.piwheels.org/simple/liftofftools/) (requires-python:>=3.6)
2022-07-29T06:35:48,245   Skipping link: No binaries permitted for liftofftools: https://www.piwheels.org/simple/liftofftools/LiftoffTools-0.3.0-py3-none-any.whl#sha256=feeceae87ffc8bdc4077f56d6f9a59de79f2e5bdccea7c71ad41e890991a3797 (from https://www.piwheels.org/simple/liftofftools/) (requires-python:>=3.6)
2022-07-29T06:35:48,246 Skipping link: not a file: https://www.piwheels.org/simple/liftofftools/
2022-07-29T06:35:48,246 Skipping link: not a file: https://pypi.org/simple/liftofftools/
2022-07-29T06:35:48,281 Given no hashes to check 1 links for project 'liftofftools': discarding no candidates
2022-07-29T06:35:48,312 Collecting liftofftools==0.4
2022-07-29T06:35:48,316   Created temporary directory: /tmp/pip-unpack-y6llc1sy
2022-07-29T06:35:48,814   Downloading LiftoffTools-0.4.tar.gz (15 kB)
2022-07-29T06:35:48,938   Added liftofftools==0.4 from https://files.pythonhosted.org/packages/ea/78/76f1304aa56278bdf985dc5bd49c89f213ac2c647275feaef380608f12fa/LiftoffTools-0.4.tar.gz#sha256=4d153344238e27048447d726623ac6f9e2adcb54451b619ac5c8673dbaba64c4 to build tracker '/tmp/pip-build-tracker-ef78fs3g'
2022-07-29T06:35:48,941   Running setup.py (path:/tmp/pip-wheel-s0gn3tas/liftofftools_cb41f4434c85410ab0faba383de57053/setup.py) egg_info for package liftofftools
2022-07-29T06:35:48,942   Created temporary directory: /tmp/pip-pip-egg-info-wt2s2pc7
2022-07-29T06:35:48,943   Preparing metadata (setup.py): started
2022-07-29T06:35:48,945   Running command python setup.py egg_info
2022-07-29T06:35:56,263   running egg_info
2022-07-29T06:35:56,267   creating /tmp/pip-pip-egg-info-wt2s2pc7/LiftoffTools.egg-info
2022-07-29T06:35:56,925   writing /tmp/pip-pip-egg-info-wt2s2pc7/LiftoffTools.egg-info/PKG-INFO
2022-07-29T06:35:57,516   writing dependency_links to /tmp/pip-pip-egg-info-wt2s2pc7/LiftoffTools.egg-info/dependency_links.txt
2022-07-29T06:35:59,281   writing entry points to /tmp/pip-pip-egg-info-wt2s2pc7/LiftoffTools.egg-info/entry_points.txt
2022-07-29T06:36:00,458   writing requirements to /tmp/pip-pip-egg-info-wt2s2pc7/LiftoffTools.egg-info/requires.txt
2022-07-29T06:36:01,050   writing top-level names to /tmp/pip-pip-egg-info-wt2s2pc7/LiftoffTools.egg-info/top_level.txt
2022-07-29T06:36:01,053   writing manifest file '/tmp/pip-pip-egg-info-wt2s2pc7/LiftoffTools.egg-info/SOURCES.txt'
2022-07-29T06:36:01,884   reading manifest file '/tmp/pip-pip-egg-info-wt2s2pc7/LiftoffTools.egg-info/SOURCES.txt'
2022-07-29T06:36:01,894   writing manifest file '/tmp/pip-pip-egg-info-wt2s2pc7/LiftoffTools.egg-info/SOURCES.txt'
2022-07-29T06:36:02,112   Preparing metadata (setup.py): finished with status 'done'
2022-07-29T06:36:02,122   Source in /tmp/pip-wheel-s0gn3tas/liftofftools_cb41f4434c85410ab0faba383de57053 has version 0.4, which satisfies requirement liftofftools==0.4 from https://files.pythonhosted.org/packages/ea/78/76f1304aa56278bdf985dc5bd49c89f213ac2c647275feaef380608f12fa/LiftoffTools-0.4.tar.gz#sha256=4d153344238e27048447d726623ac6f9e2adcb54451b619ac5c8673dbaba64c4
2022-07-29T06:36:02,124   Removed liftofftools==0.4 from https://files.pythonhosted.org/packages/ea/78/76f1304aa56278bdf985dc5bd49c89f213ac2c647275feaef380608f12fa/LiftoffTools-0.4.tar.gz#sha256=4d153344238e27048447d726623ac6f9e2adcb54451b619ac5c8673dbaba64c4 from build tracker '/tmp/pip-build-tracker-ef78fs3g'
2022-07-29T06:36:02,137 Created temporary directory: /tmp/pip-unpack-wp67ea29
2022-07-29T06:36:02,138 Building wheels for collected packages: liftofftools
2022-07-29T06:36:02,147   Created temporary directory: /tmp/pip-wheel-et83ys8r
2022-07-29T06:36:02,148   Building wheel for liftofftools (setup.py): started
2022-07-29T06:36:02,150   Destination directory: /tmp/pip-wheel-et83ys8r
2022-07-29T06:36:02,150   Running command python setup.py bdist_wheel
2022-07-29T06:36:09,085   running bdist_wheel
2022-07-29T06:36:10,493   running build
2022-07-29T06:36:10,493   running build_py
2022-07-29T06:36:11,166   creating build
2022-07-29T06:36:11,167   creating build/lib
2022-07-29T06:36:11,168   creating build/lib/liftofftools
2022-07-29T06:36:11,171   copying liftofftools/alignment.py -> build/lib/liftofftools
2022-07-29T06:36:11,174   copying liftofftools/__init__.py -> build/lib/liftofftools
2022-07-29T06:36:11,178   copying liftofftools/filepaths.py -> build/lib/liftofftools
2022-07-29T06:36:11,181   copying liftofftools/build_database.py -> build/lib/liftofftools
2022-07-29T06:36:11,185   copying liftofftools/cli_arguments.py -> build/lib/liftofftools
2022-07-29T06:36:11,189   copying liftofftools/annotation.py -> build/lib/liftofftools
2022-07-29T06:36:11,193   copying liftofftools/subprocesses.py -> build/lib/liftofftools
2022-07-29T06:36:11,196   copying liftofftools/liftofftools.py -> build/lib/liftofftools
2022-07-29T06:36:11,200   copying liftofftools/sequences.py -> build/lib/liftofftools
2022-07-29T06:36:11,204   creating build/lib/liftofftools/cluster_analysis
2022-07-29T06:36:11,206   copying liftofftools/cluster_analysis/__init__.py -> build/lib/liftofftools/cluster_analysis
2022-07-29T06:36:11,209   copying liftofftools/cluster_analysis/analyze_clusters.py -> build/lib/liftofftools/cluster_analysis
2022-07-29T06:36:11,214   copying liftofftools/cluster_analysis/mmseqs_workflow.py -> build/lib/liftofftools/cluster_analysis
2022-07-29T06:36:11,218   copying liftofftools/cluster_analysis/clusters.py -> build/lib/liftofftools/cluster_analysis
2022-07-29T06:36:11,222   creating build/lib/liftofftools/variants
2022-07-29T06:36:11,224   copying liftofftools/variants/__init__.py -> build/lib/liftofftools/variants
2022-07-29T06:36:11,227   copying liftofftools/variants/variants.py -> build/lib/liftofftools/variants
2022-07-29T06:36:11,232   creating build/lib/liftofftools/synteny
2022-07-29T06:36:11,234   copying liftofftools/synteny/__init__.py -> build/lib/liftofftools/synteny
2022-07-29T06:36:11,238   copying liftofftools/synteny/synteny.py -> build/lib/liftofftools/synteny
2022-07-29T06:36:11,242   copying liftofftools/synteny/plot_gene_order.py -> build/lib/liftofftools/synteny
2022-07-29T06:36:11,922   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-07-29T06:36:11,922     setuptools.SetuptoolsDeprecationWarning,
2022-07-29T06:36:12,640   installing to build/bdist.linux-armv7l/wheel
2022-07-29T06:36:12,641   running install
2022-07-29T06:36:12,704   running install_lib
2022-07-29T06:36:13,375   creating build/bdist.linux-armv7l
2022-07-29T06:36:13,375   creating build/bdist.linux-armv7l/wheel
2022-07-29T06:36:13,379   creating build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:36:13,381   copying build/lib/liftofftools/alignment.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:36:13,386   creating build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-29T06:36:13,388   copying build/lib/liftofftools/cluster_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-29T06:36:13,392   copying build/lib/liftofftools/cluster_analysis/analyze_clusters.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-29T06:36:13,396   copying build/lib/liftofftools/cluster_analysis/mmseqs_workflow.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-29T06:36:13,400   copying build/lib/liftofftools/cluster_analysis/clusters.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-29T06:36:13,403   copying build/lib/liftofftools/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:36:13,406   copying build/lib/liftofftools/filepaths.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:36:13,409   copying build/lib/liftofftools/build_database.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:36:13,413   copying build/lib/liftofftools/cli_arguments.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:36:13,416   copying build/lib/liftofftools/annotation.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:36:13,421   creating build/bdist.linux-armv7l/wheel/liftofftools/variants
2022-07-29T06:36:13,422   copying build/lib/liftofftools/variants/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/variants
2022-07-29T06:36:13,426   copying build/lib/liftofftools/variants/variants.py -> build/bdist.linux-armv7l/wheel/liftofftools/variants
2022-07-29T06:36:13,431   creating build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-07-29T06:36:13,432   copying build/lib/liftofftools/synteny/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-07-29T06:36:13,436   copying build/lib/liftofftools/synteny/synteny.py -> build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-07-29T06:36:13,440   copying build/lib/liftofftools/synteny/plot_gene_order.py -> build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-07-29T06:36:13,444   copying build/lib/liftofftools/subprocesses.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:36:13,447   copying build/lib/liftofftools/liftofftools.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:36:13,450   copying build/lib/liftofftools/sequences.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:36:13,453   running install_egg_info
2022-07-29T06:36:14,823   running egg_info
2022-07-29T06:36:15,487   writing LiftoffTools.egg-info/PKG-INFO
2022-07-29T06:36:16,081   writing dependency_links to LiftoffTools.egg-info/dependency_links.txt
2022-07-29T06:36:17,862   writing entry points to LiftoffTools.egg-info/entry_points.txt
2022-07-29T06:36:19,050   writing requirements to LiftoffTools.egg-info/requires.txt
2022-07-29T06:36:19,648   writing top-level names to LiftoffTools.egg-info/top_level.txt
2022-07-29T06:36:19,732   reading manifest file 'LiftoffTools.egg-info/SOURCES.txt'
2022-07-29T06:36:19,743   writing manifest file 'LiftoffTools.egg-info/SOURCES.txt'
2022-07-29T06:36:19,747   Copying LiftoffTools.egg-info to build/bdist.linux-armv7l/wheel/LiftoffTools-0.4-py3.7.egg-info
2022-07-29T06:36:19,771   running install_scripts
2022-07-29T06:36:19,938   creating build/bdist.linux-armv7l/wheel/LiftoffTools-0.4.dist-info/WHEEL
2022-07-29T06:36:19,943   creating '/tmp/pip-wheel-et83ys8r/LiftoffTools-0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-07-29T06:36:19,950   adding 'liftofftools/__init__.py'
2022-07-29T06:36:19,953   adding 'liftofftools/alignment.py'
2022-07-29T06:36:19,956   adding 'liftofftools/annotation.py'
2022-07-29T06:36:19,959   adding 'liftofftools/build_database.py'
2022-07-29T06:36:19,961   adding 'liftofftools/cli_arguments.py'
2022-07-29T06:36:19,963   adding 'liftofftools/filepaths.py'
2022-07-29T06:36:19,966   adding 'liftofftools/liftofftools.py'
2022-07-29T06:36:19,969   adding 'liftofftools/sequences.py'
2022-07-29T06:36:19,971   adding 'liftofftools/subprocesses.py'
2022-07-29T06:36:19,975   adding 'liftofftools/cluster_analysis/__init__.py'
2022-07-29T06:36:19,978   adding 'liftofftools/cluster_analysis/analyze_clusters.py'
2022-07-29T06:36:19,981   adding 'liftofftools/cluster_analysis/clusters.py'
2022-07-29T06:36:19,983   adding 'liftofftools/cluster_analysis/mmseqs_workflow.py'
2022-07-29T06:36:19,986   adding 'liftofftools/synteny/__init__.py'
2022-07-29T06:36:19,989   adding 'liftofftools/synteny/plot_gene_order.py'
2022-07-29T06:36:19,992   adding 'liftofftools/synteny/synteny.py'
2022-07-29T06:36:19,996   adding 'liftofftools/variants/__init__.py'
2022-07-29T06:36:19,998   adding 'liftofftools/variants/variants.py'
2022-07-29T06:36:20,000   adding 'LiftoffTools-0.4.dist-info/METADATA'
2022-07-29T06:36:20,002   adding 'LiftoffTools-0.4.dist-info/WHEEL'
2022-07-29T06:36:20,004   adding 'LiftoffTools-0.4.dist-info/entry_points.txt'
2022-07-29T06:36:20,006   adding 'LiftoffTools-0.4.dist-info/top_level.txt'
2022-07-29T06:36:20,008   adding 'LiftoffTools-0.4.dist-info/RECORD'
2022-07-29T06:36:20,011   removing build/bdist.linux-armv7l/wheel
2022-07-29T06:36:20,283   Building wheel for liftofftools (setup.py): finished with status 'done'
2022-07-29T06:36:20,291   Created wheel for liftofftools: filename=LiftoffTools-0.4-py3-none-any.whl size=18323 sha256=a4132a138386e47dd5016defc9d8331fbe6a801edd3da6ce29214d6587b6d2eb
2022-07-29T06:36:20,293   Stored in directory: /tmp/pip-ephem-wheel-cache-gbuoj9o_/wheels/02/94/8f/30c82580acaa0c618a93c08db6b42ae6efcfc7440e8372c2bd
2022-07-29T06:36:20,316 Successfully built liftofftools
2022-07-29T06:36:20,329 Removed build tracker: '/tmp/pip-build-tracker-ef78fs3g'