2022-07-29T06:41:41,841 Created temporary directory: /tmp/pip-ephem-wheel-cache-8z6_nl06
2022-07-29T06:41:41,846 Created temporary directory: /tmp/pip-build-tracker-nytv3zf3
2022-07-29T06:41:41,847 Initialized build tracking at /tmp/pip-build-tracker-nytv3zf3
2022-07-29T06:41:41,847 Created build tracker: /tmp/pip-build-tracker-nytv3zf3
2022-07-29T06:41:41,848 Entered build tracker: /tmp/pip-build-tracker-nytv3zf3
2022-07-29T06:41:41,849 Created temporary directory: /tmp/pip-wheel-tpbvstpu
2022-07-29T06:41:41,912 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-07-29T06:41:41,921 2 location(s) to search for versions of liftofftools:
2022-07-29T06:41:41,921 * https://pypi.org/simple/liftofftools/
2022-07-29T06:41:41,921 * https://www.piwheels.org/simple/liftofftools/
2022-07-29T06:41:41,922 Fetching project page and analyzing links: https://pypi.org/simple/liftofftools/
2022-07-29T06:41:41,923 Getting page https://pypi.org/simple/liftofftools/
2022-07-29T06:41:41,926 Found index url https://pypi.org/simple
2022-07-29T06:41:42,035   Found link https://files.pythonhosted.org/packages/64/e4/dbd9d0b263ed1cb3125bc8710bd6257bea8a5e408b63d24d93cc6a96f0a4/LiftoffTools-0.3.0.tar.gz#sha256=f36d1eba4cbe3c9cd4ecd568fa9eabb6cbea1c17a19a00db1b79f66a6b276feb (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.3.0
2022-07-29T06:41:42,036   Found link https://files.pythonhosted.org/packages/5b/b0/05822a17173cebb88ff33b76ebe9cc84b6086432abb91824d6c8ba5a649e/LiftoffTools-0.3.1.tar.gz#sha256=91c82cca5674cdb46025aa0defb966f855deeaa947dc5bbee3eb5201b589c278 (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.3.1
2022-07-29T06:41:42,038   Found link https://files.pythonhosted.org/packages/ea/78/76f1304aa56278bdf985dc5bd49c89f213ac2c647275feaef380608f12fa/LiftoffTools-0.4.tar.gz#sha256=4d153344238e27048447d726623ac6f9e2adcb54451b619ac5c8673dbaba64c4 (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.4
2022-07-29T06:41:42,039   Found link https://files.pythonhosted.org/packages/7d/d4/e08037d9ea4722890c29741846507b86ee5a222cfac388b4298300c97e3c/LiftoffTools-0.4.1.tar.gz#sha256=1a74f60f99b5c0395d032504704713a9cc9e0805b74d8b1e2beac4a074d04357 (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.4.1
2022-07-29T06:41:42,040 Fetching project page and analyzing links: https://www.piwheels.org/simple/liftofftools/
2022-07-29T06:41:42,041 Getting page https://www.piwheels.org/simple/liftofftools/
2022-07-29T06:41:42,043 Found index url https://www.piwheels.org/simple
2022-07-29T06:41:42,271   Skipping link: No binaries permitted for liftofftools: https://www.piwheels.org/simple/liftofftools/LiftoffTools-0.4-py3-none-any.whl#sha256=a4132a138386e47dd5016defc9d8331fbe6a801edd3da6ce29214d6587b6d2eb (from https://www.piwheels.org/simple/liftofftools/) (requires-python:>=3.6)
2022-07-29T06:41:42,272   Skipping link: No binaries permitted for liftofftools: https://www.piwheels.org/simple/liftofftools/LiftoffTools-0.3.1-py3-none-any.whl#sha256=27209759ac60f195ffa4379f4930b89fb066f41a7be568ed8418b24183e6ea82 (from https://www.piwheels.org/simple/liftofftools/) (requires-python:>=3.6)
2022-07-29T06:41:42,272   Skipping link: No binaries permitted for liftofftools: https://www.piwheels.org/simple/liftofftools/LiftoffTools-0.3.0-py3-none-any.whl#sha256=feeceae87ffc8bdc4077f56d6f9a59de79f2e5bdccea7c71ad41e890991a3797 (from https://www.piwheels.org/simple/liftofftools/) (requires-python:>=3.6)
2022-07-29T06:41:42,273 Skipping link: not a file: https://www.piwheels.org/simple/liftofftools/
2022-07-29T06:41:42,273 Skipping link: not a file: https://pypi.org/simple/liftofftools/
2022-07-29T06:41:42,307 Given no hashes to check 1 links for project 'liftofftools': discarding no candidates
2022-07-29T06:41:42,339 Collecting liftofftools==0.4.1
2022-07-29T06:41:42,343   Created temporary directory: /tmp/pip-unpack-q5rj4m50
2022-07-29T06:41:42,984   Downloading LiftoffTools-0.4.1.tar.gz (16 kB)
2022-07-29T06:41:43,126   Added liftofftools==0.4.1 from https://files.pythonhosted.org/packages/7d/d4/e08037d9ea4722890c29741846507b86ee5a222cfac388b4298300c97e3c/LiftoffTools-0.4.1.tar.gz#sha256=1a74f60f99b5c0395d032504704713a9cc9e0805b74d8b1e2beac4a074d04357 to build tracker '/tmp/pip-build-tracker-nytv3zf3'
2022-07-29T06:41:43,129   Running setup.py (path:/tmp/pip-wheel-tpbvstpu/liftofftools_b4e89bf8781c4ca48585fdcb2e430717/setup.py) egg_info for package liftofftools
2022-07-29T06:41:43,130   Created temporary directory: /tmp/pip-pip-egg-info-xy4tn5ft
2022-07-29T06:41:43,131   Preparing metadata (setup.py): started
2022-07-29T06:41:43,133   Running command python setup.py egg_info
2022-07-29T06:41:50,545   running egg_info
2022-07-29T06:41:50,550   creating /tmp/pip-pip-egg-info-xy4tn5ft/LiftoffTools.egg-info
2022-07-29T06:41:51,220   writing /tmp/pip-pip-egg-info-xy4tn5ft/LiftoffTools.egg-info/PKG-INFO
2022-07-29T06:41:51,814   writing dependency_links to /tmp/pip-pip-egg-info-xy4tn5ft/LiftoffTools.egg-info/dependency_links.txt
2022-07-29T06:41:53,593   writing entry points to /tmp/pip-pip-egg-info-xy4tn5ft/LiftoffTools.egg-info/entry_points.txt
2022-07-29T06:41:54,781   writing requirements to /tmp/pip-pip-egg-info-xy4tn5ft/LiftoffTools.egg-info/requires.txt
2022-07-29T06:41:55,382   writing top-level names to /tmp/pip-pip-egg-info-xy4tn5ft/LiftoffTools.egg-info/top_level.txt
2022-07-29T06:41:55,385   writing manifest file '/tmp/pip-pip-egg-info-xy4tn5ft/LiftoffTools.egg-info/SOURCES.txt'
2022-07-29T06:41:56,240   reading manifest file '/tmp/pip-pip-egg-info-xy4tn5ft/LiftoffTools.egg-info/SOURCES.txt'
2022-07-29T06:41:56,249   writing manifest file '/tmp/pip-pip-egg-info-xy4tn5ft/LiftoffTools.egg-info/SOURCES.txt'
2022-07-29T06:41:56,468   Preparing metadata (setup.py): finished with status 'done'
2022-07-29T06:41:56,478   Source in /tmp/pip-wheel-tpbvstpu/liftofftools_b4e89bf8781c4ca48585fdcb2e430717 has version 0.4.1, which satisfies requirement liftofftools==0.4.1 from https://files.pythonhosted.org/packages/7d/d4/e08037d9ea4722890c29741846507b86ee5a222cfac388b4298300c97e3c/LiftoffTools-0.4.1.tar.gz#sha256=1a74f60f99b5c0395d032504704713a9cc9e0805b74d8b1e2beac4a074d04357
2022-07-29T06:41:56,480   Removed liftofftools==0.4.1 from https://files.pythonhosted.org/packages/7d/d4/e08037d9ea4722890c29741846507b86ee5a222cfac388b4298300c97e3c/LiftoffTools-0.4.1.tar.gz#sha256=1a74f60f99b5c0395d032504704713a9cc9e0805b74d8b1e2beac4a074d04357 from build tracker '/tmp/pip-build-tracker-nytv3zf3'
2022-07-29T06:41:56,493 Created temporary directory: /tmp/pip-unpack-36tx4pkj
2022-07-29T06:41:56,494 Building wheels for collected packages: liftofftools
2022-07-29T06:41:56,503   Created temporary directory: /tmp/pip-wheel-e4lvjso4
2022-07-29T06:41:56,504   Building wheel for liftofftools (setup.py): started
2022-07-29T06:41:56,506   Destination directory: /tmp/pip-wheel-e4lvjso4
2022-07-29T06:41:56,506   Running command python setup.py bdist_wheel
2022-07-29T06:42:03,412   running bdist_wheel
2022-07-29T06:42:03,650   running build
2022-07-29T06:42:03,651   running build_py
2022-07-29T06:42:04,329   creating build
2022-07-29T06:42:04,330   creating build/lib
2022-07-29T06:42:04,332   creating build/lib/liftofftools
2022-07-29T06:42:04,335   copying liftofftools/annotation.py -> build/lib/liftofftools
2022-07-29T06:42:04,340   copying liftofftools/__init__.py -> build/lib/liftofftools
2022-07-29T06:42:04,343   copying liftofftools/cli_arguments.py -> build/lib/liftofftools
2022-07-29T06:42:04,347   copying liftofftools/alignment.py -> build/lib/liftofftools
2022-07-29T06:42:04,350   copying liftofftools/liftofftools.py -> build/lib/liftofftools
2022-07-29T06:42:04,354   copying liftofftools/build_database.py -> build/lib/liftofftools
2022-07-29T06:42:04,357   copying liftofftools/sequences.py -> build/lib/liftofftools
2022-07-29T06:42:04,361   copying liftofftools/filepaths.py -> build/lib/liftofftools
2022-07-29T06:42:04,365   copying liftofftools/subprocesses.py -> build/lib/liftofftools
2022-07-29T06:42:04,370   creating build/lib/liftofftools/cluster_analysis
2022-07-29T06:42:04,371   copying liftofftools/cluster_analysis/__init__.py -> build/lib/liftofftools/cluster_analysis
2022-07-29T06:42:04,375   copying liftofftools/cluster_analysis/analyze_clusters.py -> build/lib/liftofftools/cluster_analysis
2022-07-29T06:42:04,379   copying liftofftools/cluster_analysis/clusters.py -> build/lib/liftofftools/cluster_analysis
2022-07-29T06:42:04,382   copying liftofftools/cluster_analysis/mmseqs_workflow.py -> build/lib/liftofftools/cluster_analysis
2022-07-29T06:42:04,387   creating build/lib/liftofftools/synteny
2022-07-29T06:42:04,388   copying liftofftools/synteny/__init__.py -> build/lib/liftofftools/synteny
2022-07-29T06:42:04,392   copying liftofftools/synteny/synteny.py -> build/lib/liftofftools/synteny
2022-07-29T06:42:04,396   copying liftofftools/synteny/plot_gene_order.py -> build/lib/liftofftools/synteny
2022-07-29T06:42:04,401   creating build/lib/liftofftools/variants
2022-07-29T06:42:04,402   copying liftofftools/variants/__init__.py -> build/lib/liftofftools/variants
2022-07-29T06:42:04,406   copying liftofftools/variants/variants.py -> build/lib/liftofftools/variants
2022-07-29T06:42:05,098   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-07-29T06:42:05,098     setuptools.SetuptoolsDeprecationWarning,
2022-07-29T06:42:05,778   installing to build/bdist.linux-armv7l/wheel
2022-07-29T06:42:05,778   running install
2022-07-29T06:42:05,840   running install_lib
2022-07-29T06:42:06,522   creating build/bdist.linux-armv7l
2022-07-29T06:42:06,522   creating build/bdist.linux-armv7l/wheel
2022-07-29T06:42:06,526   creating build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:42:06,528   copying build/lib/liftofftools/annotation.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:42:06,533   copying build/lib/liftofftools/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:42:06,536   copying build/lib/liftofftools/cli_arguments.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:42:06,540   copying build/lib/liftofftools/alignment.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:42:06,544   copying build/lib/liftofftools/liftofftools.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:42:06,549   creating build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-29T06:42:06,552   copying build/lib/liftofftools/cluster_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-29T06:42:06,556   copying build/lib/liftofftools/cluster_analysis/analyze_clusters.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-29T06:42:06,561   copying build/lib/liftofftools/cluster_analysis/clusters.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-29T06:42:06,565   copying build/lib/liftofftools/cluster_analysis/mmseqs_workflow.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-07-29T06:42:06,570   copying build/lib/liftofftools/build_database.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:42:06,574   copying build/lib/liftofftools/sequences.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:42:06,578   copying build/lib/liftofftools/filepaths.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:42:06,583   creating build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-07-29T06:42:06,584   copying build/lib/liftofftools/synteny/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-07-29T06:42:06,588   copying build/lib/liftofftools/synteny/synteny.py -> build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-07-29T06:42:06,592   copying build/lib/liftofftools/synteny/plot_gene_order.py -> build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-07-29T06:42:06,596   copying build/lib/liftofftools/subprocesses.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-07-29T06:42:06,601   creating build/bdist.linux-armv7l/wheel/liftofftools/variants
2022-07-29T06:42:06,602   copying build/lib/liftofftools/variants/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/variants
2022-07-29T06:42:06,606   copying build/lib/liftofftools/variants/variants.py -> build/bdist.linux-armv7l/wheel/liftofftools/variants
2022-07-29T06:42:06,609   running install_egg_info
2022-07-29T06:42:07,994   running egg_info
2022-07-29T06:42:08,669   writing LiftoffTools.egg-info/PKG-INFO
2022-07-29T06:42:09,270   writing dependency_links to LiftoffTools.egg-info/dependency_links.txt
2022-07-29T06:42:11,063   writing entry points to LiftoffTools.egg-info/entry_points.txt
2022-07-29T06:42:12,306   writing requirements to LiftoffTools.egg-info/requires.txt
2022-07-29T06:42:12,900   writing top-level names to LiftoffTools.egg-info/top_level.txt
2022-07-29T06:42:12,991   reading manifest file 'LiftoffTools.egg-info/SOURCES.txt'
2022-07-29T06:42:13,002   writing manifest file 'LiftoffTools.egg-info/SOURCES.txt'
2022-07-29T06:42:13,005   Copying LiftoffTools.egg-info to build/bdist.linux-armv7l/wheel/LiftoffTools-0.4.1-py3.7.egg-info
2022-07-29T06:42:13,039   running install_scripts
2022-07-29T06:42:13,202   creating build/bdist.linux-armv7l/wheel/LiftoffTools-0.4.1.dist-info/WHEEL
2022-07-29T06:42:13,207   creating '/tmp/pip-wheel-e4lvjso4/LiftoffTools-0.4.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-07-29T06:42:13,215   adding 'liftofftools/__init__.py'
2022-07-29T06:42:13,218   adding 'liftofftools/alignment.py'
2022-07-29T06:42:13,222   adding 'liftofftools/annotation.py'
2022-07-29T06:42:13,225   adding 'liftofftools/build_database.py'
2022-07-29T06:42:13,228   adding 'liftofftools/cli_arguments.py'
2022-07-29T06:42:13,231   adding 'liftofftools/filepaths.py'
2022-07-29T06:42:13,234   adding 'liftofftools/liftofftools.py'
2022-07-29T06:42:13,238   adding 'liftofftools/sequences.py'
2022-07-29T06:42:13,240   adding 'liftofftools/subprocesses.py'
2022-07-29T06:42:13,244   adding 'liftofftools/cluster_analysis/__init__.py'
2022-07-29T06:42:13,248   adding 'liftofftools/cluster_analysis/analyze_clusters.py'
2022-07-29T06:42:13,252   adding 'liftofftools/cluster_analysis/clusters.py'
2022-07-29T06:42:13,255   adding 'liftofftools/cluster_analysis/mmseqs_workflow.py'
2022-07-29T06:42:13,259   adding 'liftofftools/synteny/__init__.py'
2022-07-29T06:42:13,262   adding 'liftofftools/synteny/plot_gene_order.py'
2022-07-29T06:42:13,266   adding 'liftofftools/synteny/synteny.py'
2022-07-29T06:42:13,269   adding 'liftofftools/variants/__init__.py'
2022-07-29T06:42:13,273   adding 'liftofftools/variants/variants.py'
2022-07-29T06:42:13,275   adding 'LiftoffTools-0.4.1.dist-info/METADATA'
2022-07-29T06:42:13,278   adding 'LiftoffTools-0.4.1.dist-info/WHEEL'
2022-07-29T06:42:13,279   adding 'LiftoffTools-0.4.1.dist-info/entry_points.txt'
2022-07-29T06:42:13,281   adding 'LiftoffTools-0.4.1.dist-info/top_level.txt'
2022-07-29T06:42:13,282   adding 'LiftoffTools-0.4.1.dist-info/RECORD'
2022-07-29T06:42:13,285   removing build/bdist.linux-armv7l/wheel
2022-07-29T06:42:13,535   Building wheel for liftofftools (setup.py): finished with status 'done'
2022-07-29T06:42:13,542   Created wheel for liftofftools: filename=LiftoffTools-0.4.1-py3-none-any.whl size=18337 sha256=8f66eeb3911ec224668edb179e9a25ee769d032d4a44cb1c3dc1037df7c6fb57
2022-07-29T06:42:13,544   Stored in directory: /tmp/pip-ephem-wheel-cache-8z6_nl06/wheels/74/5c/1c/2cc0bd52691a8249daedad2ab5954352a1c36a6aec15a99cc2
2022-07-29T06:42:13,566 Successfully built liftofftools
2022-07-29T06:42:13,574 Removed build tracker: '/tmp/pip-build-tracker-nytv3zf3'