2022-07-31T10:03:21,557 Created temporary directory: /tmp/pip-ephem-wheel-cache-_vd3jt8z
2022-07-31T10:03:21,563 Created temporary directory: /tmp/pip-build-tracker-yklq4b8j
2022-07-31T10:03:21,564 Initialized build tracking at /tmp/pip-build-tracker-yklq4b8j
2022-07-31T10:03:21,564 Created build tracker: /tmp/pip-build-tracker-yklq4b8j
2022-07-31T10:03:21,565 Entered build tracker: /tmp/pip-build-tracker-yklq4b8j
2022-07-31T10:03:21,566 Created temporary directory: /tmp/pip-wheel-pmxfl3bi
2022-07-31T10:03:21,637 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-07-31T10:03:21,646 2 location(s) to search for versions of stereopy:
2022-07-31T10:03:21,646 * https://pypi.org/simple/stereopy/
2022-07-31T10:03:21,646 * https://www.piwheels.org/simple/stereopy/
2022-07-31T10:03:21,647 Fetching project page and analyzing links: https://pypi.org/simple/stereopy/
2022-07-31T10:03:21,648 Getting page https://pypi.org/simple/stereopy/
2022-07-31T10:03:21,651 Found index url https://pypi.org/simple
2022-07-31T10:03:21,863   Found link https://files.pythonhosted.org/packages/ba/e8/211af80a80404175bc1fd16031e19187a8f9f30bbbf83ef798b805bcbfa8/stereopy-0.1.tar.gz#sha256=618b0c895b568f307841c4b6e95448eb73cc56ad5df3b5aff48261dc8a4eb24b (from https://pypi.org/simple/stereopy/) (requires-python:>=3.6), version: 0.1
2022-07-31T10:03:21,865   Found link https://files.pythonhosted.org/packages/8f/b9/c6937d46ebf500f64995f52f08cedcb7da142757c370a71646baf6aff8d4/stereopy-0.1.9.tar.gz#sha256=bbc2f792b3615175ceb42333f8d781a4b15ec9d090980da088bbbc757d4cb154 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.6), version: 0.1.9
2022-07-31T10:03:21,867   Found link https://files.pythonhosted.org/packages/54/d5/44997684dbd629b1d1b6456fd36c6c8a469ef33fd42840b3610b3cc130ea/stereopy-0.2.0.tar.gz#sha256=17d9332696faf468d354a87d2ba78027fc3ebd023dcba9f1ebd0c9cff418e99e (from https://pypi.org/simple/stereopy/) (requires-python:>=3.6), version: 0.2.0
2022-07-31T10:03:21,868   Found link https://files.pythonhosted.org/packages/16/63/f1b3f6cc029841596d2ab044092e8f272e68fb17590c72a6acb49fd9522f/stereopy-0.2.1.tar.gz#sha256=0a085a665f59cb2580b0f89333ca29a4d8cd27e26b9f945b683e5c52bb3a04d3 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.6), version: 0.2.1
2022-07-31T10:03:21,869   Found link https://files.pythonhosted.org/packages/e4/e7/1941f9a5646ce28f1a3ca8112eb6b1c243a296e215de176a94a2e626c608/stereopy-0.2.1.1.tar.gz#sha256=c5a2e2d8cd98e0ebbd928642c4c85c8dfe223b6e26ccb85bd6675bf206353a32 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7), version: 0.2.1.1
2022-07-31T10:03:21,871   Found link https://files.pythonhosted.org/packages/6c/76/6e35ca9b3c9d09da60e3891d6c7bcfe973d1ad9630e8ab44098440f27f2c/stereopy-0.2.2.tar.gz#sha256=607bb675a3babd9a292e25ebc8025e8e8d376d59ab935e9daed404fbff36f801 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7), version: 0.2.2
2022-07-31T10:03:21,872   Found link https://files.pythonhosted.org/packages/fa/b5/2c2344ba53f0de81fc4a386fd8c507967fd63d3e44021535488467182c1c/stereopy-0.2.3.tar.gz#sha256=0cf8fc82e9e41f1d0257126f08145200b4111720baad700b0c16a2f07e3880c6 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7), version: 0.2.3
2022-07-31T10:03:21,874   Found link https://files.pythonhosted.org/packages/a9/5e/02cc76bd28abf7219cc546cda064f4ec21c92b90bb519e618d16c1b2197f/stereopy-0.2.4.tar.gz#sha256=29962ff71a199b99c3516562dbb798c0ed30ff2e077d5010cbdf8b6928bd17b0 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7), version: 0.2.4
2022-07-31T10:03:21,875   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/56/fc/7f20b2c01dc17f6d9b850d6a8c02ce9095bbad5365142bf7ff8ec88792d4/stereopy-0.3.0-py3.7.egg#sha256=2953ed5dd968e64eba0ab15d496c2a9015252ba029d8c8444ffbafb0d499071b (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7)
2022-07-31T10:03:21,876   Found link https://files.pythonhosted.org/packages/35/8d/9cb2ea6c8b59d7714148028ff88e8cfe91ea9e3a10d4a8e7292f3aae309d/stereopy-0.3.0.tar.gz#sha256=3bdd839de4886ff5f7b8251a00b1a763a66a5473e2fe6ec34cc4d2a604132abb (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7), version: 0.3.0
2022-07-31T10:03:21,877   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/cc/10/58d292a4ac53009f0d962ed34516a21f9736f6c96a68ae183412a3160b9b/stereopy-0.3.1-py3.7.egg#sha256=c0241685863ab325fa51f816372adb16d0da7a88582e44f9f006ce565a89f673 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7)
2022-07-31T10:03:21,878   Found link https://files.pythonhosted.org/packages/8b/d2/5decdd8b69540c81d8a0e488bc44404a04bc3a32399d5b072a50f6237af6/stereopy-0.3.1.tar.gz#sha256=9704e0b1b6e75f63a1456298f76ae4ba36793497b5eb84d6db2f2ae5390a000f (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7), version: 0.3.1
2022-07-31T10:03:21,879   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/7b/95/e153f701ca2de58cc86c3e6ad8432119bc39eb108b4ece7b6627e6f81bc6/stereopy-0.4.0-py3.8.egg#sha256=916d37410b3be1c49b54b3a58fb0794c277a389abae326597069c0468a402856 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7)
2022-07-31T10:03:21,880   Found link https://files.pythonhosted.org/packages/17/e1/848749186c0391a01dca51accb267718f502165391bace94388b821785a1/stereopy-0.4.0.tar.gz#sha256=011b3007f1f36c9ee30c40c5fe9cbb98a882be3e78614622d3716d6d0b3253e9 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7), version: 0.4.0
2022-07-31T10:03:21,881 Fetching project page and analyzing links: https://www.piwheels.org/simple/stereopy/
2022-07-31T10:03:21,882 Getting page https://www.piwheels.org/simple/stereopy/
2022-07-31T10:03:21,884 Found index url https://www.piwheels.org/simple
2022-07-31T10:03:22,093   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.3.1-py3-none-any.whl#sha256=f835bc3f59bc12ed7b96d5c50a54bbedca1f4eddee615a24269dddadcbdc0a2b (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.7)
2022-07-31T10:03:22,094   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.3.0-py3-none-any.whl#sha256=0656dab52c5d0c4807a5506ab388950e6bbb87788f5799902aa19249f4b2053c (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.7)
2022-07-31T10:03:22,094   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.2.4-py3-none-any.whl#sha256=b78386b89c5ad578686208cee978abbc50c63408f79a3e13825cbb216c1f85e2 (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.7)
2022-07-31T10:03:22,095   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.2.2-py3-none-any.whl#sha256=cf30abb8d0be555dc5a8b89f25c6cb1d9751b4020397a3eb52f8378549ae6fd9 (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.7)
2022-07-31T10:03:22,095   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.2.1.1-py3-none-any.whl#sha256=10f5984a2c3aa0f26dd16a87369bebc8274256dd4a44a641f50fa40e72e64d64 (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.7)
2022-07-31T10:03:22,096   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.2.1-py3-none-any.whl#sha256=cf71efeac7cafa9bff7c3a22c48c80c49cdd789556030cddb0f42576b578642b (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.6)
2022-07-31T10:03:22,096   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.2.0-py3-none-any.whl#sha256=ae14c63aea986a54218b9fed56b879d0a97082db8a4f6fadc91a319e0ce90c8f (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.6)
2022-07-31T10:03:22,097   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.1.9-py3-none-any.whl#sha256=9786a21d45274a8ed729134a2a5fa7379701020aa314d693fc95f4cca2a91e75 (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.6)
2022-07-31T10:03:22,097   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.1-py3-none-any.whl#sha256=1436faf8dcf176e53adce94e2bc87792de7d4cdaaed317c408128bc9daa5e231 (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.6)
2022-07-31T10:03:22,098 Skipping link: not a file: https://www.piwheels.org/simple/stereopy/
2022-07-31T10:03:22,098 Skipping link: not a file: https://pypi.org/simple/stereopy/
2022-07-31T10:03:22,135 Given no hashes to check 1 links for project 'stereopy': discarding no candidates
2022-07-31T10:03:22,167 Collecting stereopy==0.4.0
2022-07-31T10:03:22,171   Created temporary directory: /tmp/pip-unpack-boh0jxon
2022-07-31T10:03:24,212   Downloading stereopy-0.4.0.tar.gz (40.4 MB)
2022-07-31T10:03:39,792   Added stereopy==0.4.0 from https://files.pythonhosted.org/packages/17/e1/848749186c0391a01dca51accb267718f502165391bace94388b821785a1/stereopy-0.4.0.tar.gz#sha256=011b3007f1f36c9ee30c40c5fe9cbb98a882be3e78614622d3716d6d0b3253e9 to build tracker '/tmp/pip-build-tracker-yklq4b8j'
2022-07-31T10:03:39,796   Running setup.py (path:/tmp/pip-wheel-pmxfl3bi/stereopy_8a98bc3d6a2a44dea2cd40eb7f1090b2/setup.py) egg_info for package stereopy
2022-07-31T10:03:39,798   Created temporary directory: /tmp/pip-pip-egg-info-axsv8jng
2022-07-31T10:03:39,798   Preparing metadata (setup.py): started
2022-07-31T10:03:39,800   Running command python setup.py egg_info
2022-07-31T10:10:18,701   running egg_info
2022-07-31T10:10:18,706   creating /tmp/pip-pip-egg-info-axsv8jng/stereopy.egg-info
2022-07-31T10:10:19,537   writing /tmp/pip-pip-egg-info-axsv8jng/stereopy.egg-info/PKG-INFO
2022-07-31T10:10:20,131   writing dependency_links to /tmp/pip-pip-egg-info-axsv8jng/stereopy.egg-info/dependency_links.txt
2022-07-31T10:10:23,076   writing requirements to /tmp/pip-pip-egg-info-axsv8jng/stereopy.egg-info/requires.txt
2022-07-31T10:10:23,668   writing top-level names to /tmp/pip-pip-egg-info-axsv8jng/stereopy.egg-info/top_level.txt
2022-07-31T10:10:23,671   writing manifest file '/tmp/pip-pip-egg-info-axsv8jng/stereopy.egg-info/SOURCES.txt'
2022-07-31T10:10:25,340   /usr/local/lib/python3.7/dist-packages/setuptools/installer.py:30: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
2022-07-31T10:10:25,340     SetuptoolsDeprecationWarning,
2022-07-31T10:10:25,341   listing git files failed - pretending there aren't any
2022-07-31T10:10:25,366   reading manifest file '/tmp/pip-pip-egg-info-axsv8jng/stereopy.egg-info/SOURCES.txt'
2022-07-31T10:10:25,371   adding license file 'LICENSE'
2022-07-31T10:10:25,387   writing manifest file '/tmp/pip-pip-egg-info-axsv8jng/stereopy.egg-info/SOURCES.txt'
2022-07-31T10:10:25,656   Preparing metadata (setup.py): finished with status 'done'
2022-07-31T10:10:25,666   Source in /tmp/pip-wheel-pmxfl3bi/stereopy_8a98bc3d6a2a44dea2cd40eb7f1090b2 has version 0.4.0, which satisfies requirement stereopy==0.4.0 from https://files.pythonhosted.org/packages/17/e1/848749186c0391a01dca51accb267718f502165391bace94388b821785a1/stereopy-0.4.0.tar.gz#sha256=011b3007f1f36c9ee30c40c5fe9cbb98a882be3e78614622d3716d6d0b3253e9
2022-07-31T10:10:25,668   Removed stereopy==0.4.0 from https://files.pythonhosted.org/packages/17/e1/848749186c0391a01dca51accb267718f502165391bace94388b821785a1/stereopy-0.4.0.tar.gz#sha256=011b3007f1f36c9ee30c40c5fe9cbb98a882be3e78614622d3716d6d0b3253e9 from build tracker '/tmp/pip-build-tracker-yklq4b8j'
2022-07-31T10:10:25,682 Created temporary directory: /tmp/pip-unpack-1y5y_9i_
2022-07-31T10:10:25,683 Building wheels for collected packages: stereopy
2022-07-31T10:10:25,692   Created temporary directory: /tmp/pip-wheel-uwybe160
2022-07-31T10:10:25,693   Building wheel for stereopy (setup.py): started
2022-07-31T10:10:25,695   Destination directory: /tmp/pip-wheel-uwybe160
2022-07-31T10:10:25,695   Running command python setup.py bdist_wheel
2022-07-31T10:10:28,299   /usr/local/lib/python3.7/dist-packages/setuptools/installer.py:30: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
2022-07-31T10:10:28,300     SetuptoolsDeprecationWarning,
2022-07-31T10:10:48,491   running bdist_wheel
2022-07-31T10:10:49,208   running build
2022-07-31T10:10:49,209   running build_py
2022-07-31T10:10:50,043   creating build
2022-07-31T10:10:50,045   creating build/lib
2022-07-31T10:10:50,047   creating build/lib/stereo
2022-07-31T10:10:50,050   copying stereo/log_manager.py -> build/lib/stereo
2022-07-31T10:10:50,054   copying stereo/__init__.py -> build/lib/stereo
2022-07-31T10:10:50,058   copying stereo/config.py -> build/lib/stereo
2022-07-31T10:10:50,065   creating build/lib/stereo/preprocess
2022-07-31T10:10:50,067   copying stereo/preprocess/normalize.py -> build/lib/stereo/preprocess
2022-07-31T10:10:50,072   copying stereo/preprocess/sc_transform.py -> build/lib/stereo/preprocess
2022-07-31T10:10:50,076   copying stereo/preprocess/qc.py -> build/lib/stereo/preprocess
2022-07-31T10:10:50,080   copying stereo/preprocess/filter.py -> build/lib/stereo/preprocess
2022-07-31T10:10:50,084   copying stereo/preprocess/__init__.py -> build/lib/stereo/preprocess
2022-07-31T10:10:50,090   creating build/lib/stereo/tools
2022-07-31T10:10:50,093   copying stereo/tools/cell_segment.py -> build/lib/stereo/tools
2022-07-31T10:10:50,097   copying stereo/tools/clustering.py -> build/lib/stereo/tools
2022-07-31T10:10:50,102   copying stereo/tools/cell_type_anno.py -> build/lib/stereo/tools
2022-07-31T10:10:50,107   copying stereo/tools/dim_reduce.py -> build/lib/stereo/tools
2022-07-31T10:10:50,111   copying stereo/tools/cluster.py -> build/lib/stereo/tools
2022-07-31T10:10:50,116   copying stereo/tools/spatial_pattern_score.py -> build/lib/stereo/tools
2022-07-31T10:10:50,120   copying stereo/tools/cell_correct.py -> build/lib/stereo/tools
2022-07-31T10:10:50,125   copying stereo/tools/highly_variable_genes.py -> build/lib/stereo/tools
2022-07-31T10:10:50,130   copying stereo/tools/__init__.py -> build/lib/stereo/tools
2022-07-31T10:10:50,134   copying stereo/tools/cell_cut.py -> build/lib/stereo/tools
2022-07-31T10:10:50,138   copying stereo/tools/find_markers.py -> build/lib/stereo/tools
2022-07-31T10:10:50,143   copying stereo/tools/LR_interaction.py -> build/lib/stereo/tools
2022-07-31T10:10:50,148   copying stereo/tools/spatial_lag.py -> build/lib/stereo/tools
2022-07-31T10:10:50,154   creating build/lib/stereo/image
2022-07-31T10:10:50,157   copying stereo/image/pyramid.py -> build/lib/stereo/image
2022-07-31T10:10:50,161   copying stereo/image/__init__.py -> build/lib/stereo/image
2022-07-31T10:10:50,167   creating build/lib/stereo/core
2022-07-31T10:10:50,169   copying stereo/core/st_pipeline.py -> build/lib/stereo/core
2022-07-31T10:10:50,177   copying stereo/core/stereo_exp_data.py -> build/lib/stereo/core
2022-07-31T10:10:50,181   copying stereo/core/stereo_result.py -> build/lib/stereo/core
2022-07-31T10:10:50,186   copying stereo/core/gene.py -> build/lib/stereo/core
2022-07-31T10:10:50,189   copying stereo/core/cell.py -> build/lib/stereo/core
2022-07-31T10:10:50,194   copying stereo/core/tool_base.py -> build/lib/stereo/core
2022-07-31T10:10:50,198   copying stereo/core/data.py -> build/lib/stereo/core
2022-07-31T10:10:50,202   copying stereo/core/__init__.py -> build/lib/stereo/core
2022-07-31T10:10:50,209   creating build/lib/stereo/algorithm
2022-07-31T10:10:50,211   copying stereo/algorithm/gaussian_smooth.py -> build/lib/stereo/algorithm
2022-07-31T10:10:50,215   copying stereo/algorithm/leiden.py -> build/lib/stereo/algorithm
2022-07-31T10:10:50,218   copying stereo/algorithm/mannwhitneyu.py -> build/lib/stereo/algorithm
2022-07-31T10:10:50,222   copying stereo/algorithm/neighbors.py -> build/lib/stereo/algorithm
2022-07-31T10:10:50,227   copying stereo/algorithm/umap.py -> build/lib/stereo/algorithm
2022-07-31T10:10:50,231   copying stereo/algorithm/dim_reduce.py -> build/lib/stereo/algorithm
2022-07-31T10:10:50,234   copying stereo/algorithm/statistics.py -> build/lib/stereo/algorithm
2022-07-31T10:10:50,238   copying stereo/algorithm/phenograph.py -> build/lib/stereo/algorithm
2022-07-31T10:10:50,241   copying stereo/algorithm/spatial_pattern_score.py -> build/lib/stereo/algorithm
2022-07-31T10:10:50,244   copying stereo/algorithm/highly_variable_genes.py -> build/lib/stereo/algorithm
2022-07-31T10:10:50,249   copying stereo/algorithm/scenic.py -> build/lib/stereo/algorithm
2022-07-31T10:10:50,252   copying stereo/algorithm/__init__.py -> build/lib/stereo/algorithm
2022-07-31T10:10:50,255   copying stereo/algorithm/cell_correction.py -> build/lib/stereo/algorithm
2022-07-31T10:10:50,259   copying stereo/algorithm/normalization.py -> build/lib/stereo/algorithm
2022-07-31T10:10:50,262   copying stereo/algorithm/scale.py -> build/lib/stereo/algorithm
2022-07-31T10:10:50,266   copying stereo/algorithm/spatial_hotspot.py -> build/lib/stereo/algorithm
2022-07-31T10:10:50,269   copying stereo/algorithm/_louvain.py -> build/lib/stereo/algorithm
2022-07-31T10:10:50,275   creating build/lib/stereo/io
2022-07-31T10:10:50,276   copying stereo/io/h5ad.py -> build/lib/stereo/io
2022-07-31T10:10:50,281   copying stereo/io/writer.py -> build/lib/stereo/io
2022-07-31T10:10:50,285   copying stereo/io/gef.py -> build/lib/stereo/io
2022-07-31T10:10:50,289   copying stereo/io/__init__.py -> build/lib/stereo/io
2022-07-31T10:10:50,293   copying stereo/io/reader.py -> build/lib/stereo/io
2022-07-31T10:10:50,299   creating build/lib/stereo/plots
2022-07-31T10:10:50,301   copying stereo/plots/violin.py -> build/lib/stereo/plots
2022-07-31T10:10:50,305   copying stereo/plots/marker_genes.py -> build/lib/stereo/plots
2022-07-31T10:10:50,309   copying stereo/plots/plot_collection.py -> build/lib/stereo/plots
2022-07-31T10:10:50,314   copying stereo/plots/__init__.py -> build/lib/stereo/plots
2022-07-31T10:10:50,317   copying stereo/plots/scatter.py -> build/lib/stereo/plots
2022-07-31T10:10:50,323   creating build/lib/stereo/utils
2022-07-31T10:10:50,325   copying stereo/utils/data_helper.py -> build/lib/stereo/utils
2022-07-31T10:10:50,329   copying stereo/utils/spmatrix_helper.py -> build/lib/stereo/utils
2022-07-31T10:10:50,332   copying stereo/utils/hvg_utils.py -> build/lib/stereo/utils
2022-07-31T10:10:50,336   copying stereo/utils/__init__.py -> build/lib/stereo/utils
2022-07-31T10:10:50,339   copying stereo/utils/time_consume.py -> build/lib/stereo/utils
2022-07-31T10:10:50,342   copying stereo/utils/correlation.py -> build/lib/stereo/utils
2022-07-31T10:10:50,347   creating build/lib/stereo/image/segmentation
2022-07-31T10:10:50,348   copying stereo/image/segmentation/__init__.py -> build/lib/stereo/image/segmentation
2022-07-31T10:10:50,352   copying stereo/image/segmentation/segment.py -> build/lib/stereo/image/segmentation
2022-07-31T10:10:50,357   creating build/lib/stereo/image/x2tif
2022-07-31T10:10:50,358   copying stereo/image/x2tif/x2tif.py -> build/lib/stereo/image/x2tif
2022-07-31T10:10:50,362   copying stereo/image/x2tif/__init__.py -> build/lib/stereo/image/x2tif
2022-07-31T10:10:50,367   creating build/lib/stereo/image/tissue_cut
2022-07-31T10:10:50,369   copying stereo/image/tissue_cut/pipeline.py -> build/lib/stereo/image/tissue_cut
2022-07-31T10:10:50,373   copying stereo/image/tissue_cut/__init__.py -> build/lib/stereo/image/tissue_cut
2022-07-31T10:10:50,378   creating build/lib/stereo/image/segmentation_deepcell
2022-07-31T10:10:50,379   copying stereo/image/segmentation_deepcell/__init__.py -> build/lib/stereo/image/segmentation_deepcell
2022-07-31T10:10:50,383   copying stereo/image/segmentation_deepcell/segment.py -> build/lib/stereo/image/segmentation_deepcell
2022-07-31T10:10:50,388   creating build/lib/stereo/image/segmentation/seg_utils
2022-07-31T10:10:50,390   copying stereo/image/segmentation/seg_utils/cell_seg_pipeline.py -> build/lib/stereo/image/segmentation/seg_utils
2022-07-31T10:10:50,395   copying stereo/image/segmentation/seg_utils/tissue_seg.py -> build/lib/stereo/image/segmentation/seg_utils
2022-07-31T10:10:50,398   copying stereo/image/segmentation/seg_utils/image.py -> build/lib/stereo/image/segmentation/seg_utils
2022-07-31T10:10:50,402   copying stereo/image/segmentation/seg_utils/resnet_unet.py -> build/lib/stereo/image/segmentation/seg_utils
2022-07-31T10:10:50,406   copying stereo/image/segmentation/seg_utils/tissue_seg_pipeline.py -> build/lib/stereo/image/segmentation/seg_utils
2022-07-31T10:10:50,409   copying stereo/image/segmentation/seg_utils/find_maxima.py -> build/lib/stereo/image/segmentation/seg_utils
2022-07-31T10:10:50,414   copying stereo/image/segmentation/seg_utils/dataset.py -> build/lib/stereo/image/segmentation/seg_utils
2022-07-31T10:10:50,417   copying stereo/image/segmentation/seg_utils/__init__.py -> build/lib/stereo/image/segmentation/seg_utils
2022-07-31T10:10:50,420   copying stereo/image/segmentation/seg_utils/grade.py -> build/lib/stereo/image/segmentation/seg_utils
2022-07-31T10:10:50,424   copying stereo/image/segmentation/seg_utils/utils.py -> build/lib/stereo/image/segmentation/seg_utils
2022-07-31T10:10:50,428   copying stereo/image/segmentation/seg_utils/cell_infer.py -> build/lib/stereo/image/segmentation/seg_utils
2022-07-31T10:10:50,434   creating build/lib/stereo/image/segmentation/seg_utils/models
2022-07-31T10:10:50,436   copying stereo/image/segmentation/seg_utils/models/epsanet.py -> build/lib/stereo/image/segmentation/seg_utils/models
2022-07-31T10:10:50,441   copying stereo/image/segmentation/seg_utils/models/__init__.py -> build/lib/stereo/image/segmentation/seg_utils/models
2022-07-31T10:10:50,444   copying stereo/image/segmentation/seg_utils/models/SE_weight_module.py -> build/lib/stereo/image/segmentation/seg_utils/models
2022-07-31T10:10:50,449   creating build/lib/stereo/image/tissue_cut/tissue_cut_utils
2022-07-31T10:10:50,451   copying stereo/image/tissue_cut/tissue_cut_utils/tissue_seg_bcdu_uity.py -> build/lib/stereo/image/tissue_cut/tissue_cut_utils
2022-07-31T10:10:50,455   copying stereo/image/tissue_cut/tissue_cut_utils/tissue_seg_net.py -> build/lib/stereo/image/tissue_cut/tissue_cut_utils
2022-07-31T10:10:50,459   copying stereo/image/tissue_cut/tissue_cut_utils/tissue_seg_bcdu.py -> build/lib/stereo/image/tissue_cut/tissue_cut_utils
2022-07-31T10:10:50,463   copying stereo/image/tissue_cut/tissue_cut_utils/tissue_seg_utils.py -> build/lib/stereo/image/tissue_cut/tissue_cut_utils
2022-07-31T10:10:50,466   copying stereo/image/tissue_cut/tissue_cut_utils/__init__.py -> build/lib/stereo/image/tissue_cut/tissue_cut_utils
2022-07-31T10:10:50,470   copying stereo/image/tissue_cut/tissue_cut_utils/tissue_seg_bcdu_model.py -> build/lib/stereo/image/tissue_cut/tissue_cut_utils
2022-07-31T10:10:50,476   creating build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:50,477   copying stereo/image/segmentation_deepcell/seg_utils/cell_seg_pipeline.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:50,482   copying stereo/image/segmentation_deepcell/seg_utils/tissue_seg.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:50,486   copying stereo/image/segmentation_deepcell/seg_utils/image.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:50,489   copying stereo/image/segmentation_deepcell/seg_utils/tissue_seg_pipeline.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:50,493   copying stereo/image/segmentation_deepcell/seg_utils/find_maxima.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:50,497   copying stereo/image/segmentation_deepcell/seg_utils/__init__.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:50,500   copying stereo/image/segmentation_deepcell/seg_utils/grade.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:50,504   copying stereo/image/segmentation_deepcell/seg_utils/utils.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:50,508   copying stereo/image/segmentation_deepcell/seg_utils/cell_infer.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:50,515   creating build/lib/stereo/algorithm/pysctransform
2022-07-31T10:10:50,516   copying stereo/algorithm/pysctransform/pysctransform.py -> build/lib/stereo/algorithm/pysctransform
2022-07-31T10:10:50,522   copying stereo/algorithm/pysctransform/r_bw.py -> build/lib/stereo/algorithm/pysctransform
2022-07-31T10:10:50,525   copying stereo/algorithm/pysctransform/jax_bfgs.py -> build/lib/stereo/algorithm/pysctransform
2022-07-31T10:10:50,529   copying stereo/algorithm/pysctransform/fit.py -> build/lib/stereo/algorithm/pysctransform
2022-07-31T10:10:50,532   copying stereo/algorithm/pysctransform/__init__.py -> build/lib/stereo/algorithm/pysctransform
2022-07-31T10:10:50,536   copying stereo/algorithm/pysctransform/fit_glmgp.py -> build/lib/stereo/algorithm/pysctransform
2022-07-31T10:10:50,539   copying stereo/algorithm/pysctransform/plotting.py -> build/lib/stereo/algorithm/pysctransform
2022-07-31T10:10:50,546   creating build/lib/stereo/plots/interact_plot
2022-07-31T10:10:50,547   copying stereo/plots/interact_plot/spatial_cluster.py -> build/lib/stereo/plots/interact_plot
2022-07-31T10:10:50,551   copying stereo/plots/interact_plot/poly_selection.py -> build/lib/stereo/plots/interact_plot
2022-07-31T10:10:50,555   copying stereo/plots/interact_plot/interactive_scatter.py -> build/lib/stereo/plots/interact_plot
2022-07-31T10:10:50,559   copying stereo/plots/interact_plot/__init__.py -> build/lib/stereo/plots/interact_plot
2022-07-31T10:10:50,564   creating build/lib/stereo/plots/_plot_basic
2022-07-31T10:10:50,565   copying stereo/plots/_plot_basic/get_stereo_data.py -> build/lib/stereo/plots/_plot_basic
2022-07-31T10:10:50,569   copying stereo/plots/_plot_basic/heatmap_plt.py -> build/lib/stereo/plots/_plot_basic
2022-07-31T10:10:50,573   copying stereo/plots/_plot_basic/__init__.py -> build/lib/stereo/plots/_plot_basic
2022-07-31T10:10:50,576   running egg_info
2022-07-31T10:10:52,227   writing stereopy.egg-info/PKG-INFO
2022-07-31T10:10:52,817   writing dependency_links to stereopy.egg-info/dependency_links.txt
2022-07-31T10:10:55,755   writing requirements to stereopy.egg-info/requires.txt
2022-07-31T10:10:56,346   writing top-level names to stereopy.egg-info/top_level.txt
2022-07-31T10:10:56,887   listing git files failed - pretending there aren't any
2022-07-31T10:10:56,905   reading manifest file 'stereopy.egg-info/SOURCES.txt'
2022-07-31T10:10:56,940   adding license file 'LICENSE'
2022-07-31T10:10:56,966   writing manifest file 'stereopy.egg-info/SOURCES.txt'
2022-07-31T10:10:57,853   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-07-31T10:10:57,853     setuptools.SetuptoolsDeprecationWarning,
2022-07-31T10:10:58,685   installing to build/bdist.linux-armv7l/wheel
2022-07-31T10:10:58,686   running install
2022-07-31T10:10:58,746   running install_lib
2022-07-31T10:10:59,653   creating build/bdist.linux-armv7l
2022-07-31T10:10:59,653   creating build/bdist.linux-armv7l/wheel
2022-07-31T10:10:59,657   creating build/bdist.linux-armv7l/wheel/stereo
2022-07-31T10:10:59,659   copying build/lib/stereo/log_manager.py -> build/bdist.linux-armv7l/wheel/stereo
2022-07-31T10:10:59,664   creating build/bdist.linux-armv7l/wheel/stereo/preprocess
2022-07-31T10:10:59,666   copying build/lib/stereo/preprocess/normalize.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2022-07-31T10:10:59,670   copying build/lib/stereo/preprocess/sc_transform.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2022-07-31T10:10:59,673   copying build/lib/stereo/preprocess/qc.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2022-07-31T10:10:59,677   copying build/lib/stereo/preprocess/filter.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2022-07-31T10:10:59,680   copying build/lib/stereo/preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2022-07-31T10:10:59,685   creating build/bdist.linux-armv7l/wheel/stereo/tools
2022-07-31T10:10:59,686   copying build/lib/stereo/tools/cell_segment.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-07-31T10:10:59,690   copying build/lib/stereo/tools/clustering.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-07-31T10:10:59,694   copying build/lib/stereo/tools/cell_type_anno.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-07-31T10:10:59,698   copying build/lib/stereo/tools/dim_reduce.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-07-31T10:10:59,702   copying build/lib/stereo/tools/cluster.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-07-31T10:10:59,706   copying build/lib/stereo/tools/spatial_pattern_score.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-07-31T10:10:59,709   copying build/lib/stereo/tools/cell_correct.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-07-31T10:10:59,713   copying build/lib/stereo/tools/highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-07-31T10:10:59,717   copying build/lib/stereo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-07-31T10:10:59,720   copying build/lib/stereo/tools/cell_cut.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-07-31T10:10:59,724   copying build/lib/stereo/tools/find_markers.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-07-31T10:10:59,728   copying build/lib/stereo/tools/LR_interaction.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-07-31T10:10:59,732   copying build/lib/stereo/tools/spatial_lag.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-07-31T10:10:59,737   creating build/bdist.linux-armv7l/wheel/stereo/image
2022-07-31T10:10:59,739   creating build/bdist.linux-armv7l/wheel/stereo/image/segmentation
2022-07-31T10:10:59,741   copying build/lib/stereo/image/segmentation/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation
2022-07-31T10:10:59,744   copying build/lib/stereo/image/segmentation/segment.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation
2022-07-31T10:10:59,749   creating build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-07-31T10:10:59,750   copying build/lib/stereo/image/segmentation/seg_utils/cell_seg_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-07-31T10:10:59,754   copying build/lib/stereo/image/segmentation/seg_utils/tissue_seg.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-07-31T10:10:59,758   copying build/lib/stereo/image/segmentation/seg_utils/image.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-07-31T10:10:59,761   copying build/lib/stereo/image/segmentation/seg_utils/resnet_unet.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-07-31T10:10:59,765   copying build/lib/stereo/image/segmentation/seg_utils/tissue_seg_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-07-31T10:10:59,768   copying build/lib/stereo/image/segmentation/seg_utils/find_maxima.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-07-31T10:10:59,772   copying build/lib/stereo/image/segmentation/seg_utils/dataset.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-07-31T10:10:59,775   copying build/lib/stereo/image/segmentation/seg_utils/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-07-31T10:10:59,778   creating build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils/models
2022-07-31T10:10:59,780   copying build/lib/stereo/image/segmentation/seg_utils/models/epsanet.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils/models
2022-07-31T10:10:59,785   copying build/lib/stereo/image/segmentation/seg_utils/models/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils/models
2022-07-31T10:10:59,788   copying build/lib/stereo/image/segmentation/seg_utils/models/SE_weight_module.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils/models
2022-07-31T10:10:59,791   copying build/lib/stereo/image/segmentation/seg_utils/grade.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-07-31T10:10:59,795   copying build/lib/stereo/image/segmentation/seg_utils/utils.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-07-31T10:10:59,799   copying build/lib/stereo/image/segmentation/seg_utils/cell_infer.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-07-31T10:10:59,805   creating build/bdist.linux-armv7l/wheel/stereo/image/x2tif
2022-07-31T10:10:59,806   copying build/lib/stereo/image/x2tif/x2tif.py -> build/bdist.linux-armv7l/wheel/stereo/image/x2tif
2022-07-31T10:10:59,810   copying build/lib/stereo/image/x2tif/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/x2tif
2022-07-31T10:10:59,814   creating build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut
2022-07-31T10:10:59,816   copying build/lib/stereo/image/tissue_cut/pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut
2022-07-31T10:10:59,821   creating build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut/tissue_cut_utils
2022-07-31T10:10:59,822   copying build/lib/stereo/image/tissue_cut/tissue_cut_utils/tissue_seg_bcdu_uity.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut/tissue_cut_utils
2022-07-31T10:10:59,826   copying build/lib/stereo/image/tissue_cut/tissue_cut_utils/tissue_seg_net.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut/tissue_cut_utils
2022-07-31T10:10:59,830   copying build/lib/stereo/image/tissue_cut/tissue_cut_utils/tissue_seg_bcdu.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut/tissue_cut_utils
2022-07-31T10:10:59,834   copying build/lib/stereo/image/tissue_cut/tissue_cut_utils/tissue_seg_utils.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut/tissue_cut_utils
2022-07-31T10:10:59,837   copying build/lib/stereo/image/tissue_cut/tissue_cut_utils/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut/tissue_cut_utils
2022-07-31T10:10:59,840   copying build/lib/stereo/image/tissue_cut/tissue_cut_utils/tissue_seg_bcdu_model.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut/tissue_cut_utils
2022-07-31T10:10:59,844   copying build/lib/stereo/image/tissue_cut/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut
2022-07-31T10:10:59,847   copying build/lib/stereo/image/pyramid.py -> build/bdist.linux-armv7l/wheel/stereo/image
2022-07-31T10:10:59,852   creating build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell
2022-07-31T10:10:59,853   copying build/lib/stereo/image/segmentation_deepcell/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell
2022-07-31T10:10:59,857   copying build/lib/stereo/image/segmentation_deepcell/segment.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell
2022-07-31T10:10:59,861   creating build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:59,862   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/cell_seg_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:59,867   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/tissue_seg.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:59,870   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/image.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:59,873   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/tissue_seg_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:59,877   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/find_maxima.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:59,881   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:59,884   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/grade.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:59,887   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/utils.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:59,892   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/cell_infer.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-07-31T10:10:59,897   copying build/lib/stereo/image/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image
2022-07-31T10:10:59,901   creating build/bdist.linux-armv7l/wheel/stereo/core
2022-07-31T10:10:59,902   copying build/lib/stereo/core/st_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-07-31T10:10:59,909   copying build/lib/stereo/core/stereo_exp_data.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-07-31T10:10:59,913   copying build/lib/stereo/core/stereo_result.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-07-31T10:10:59,917   copying build/lib/stereo/core/gene.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-07-31T10:10:59,920   copying build/lib/stereo/core/cell.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-07-31T10:10:59,923   copying build/lib/stereo/core/tool_base.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-07-31T10:10:59,927   copying build/lib/stereo/core/data.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-07-31T10:10:59,931   copying build/lib/stereo/core/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-07-31T10:10:59,936   creating build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-07-31T10:10:59,937   copying build/lib/stereo/algorithm/gaussian_smooth.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-07-31T10:10:59,940   copying build/lib/stereo/algorithm/leiden.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-07-31T10:10:59,944   copying build/lib/stereo/algorithm/mannwhitneyu.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-07-31T10:10:59,948   copying build/lib/stereo/algorithm/neighbors.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-07-31T10:10:59,952   copying build/lib/stereo/algorithm/umap.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-07-31T10:10:59,956   copying build/lib/stereo/algorithm/dim_reduce.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-07-31T10:10:59,959   copying build/lib/stereo/algorithm/statistics.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-07-31T10:10:59,962   copying build/lib/stereo/algorithm/phenograph.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-07-31T10:10:59,966   copying build/lib/stereo/algorithm/spatial_pattern_score.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-07-31T10:10:59,969   copying build/lib/stereo/algorithm/highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-07-31T10:10:59,974   creating build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-07-31T10:10:59,975   copying build/lib/stereo/algorithm/pysctransform/pysctransform.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-07-31T10:10:59,981   copying build/lib/stereo/algorithm/pysctransform/r_bw.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-07-31T10:10:59,985   copying build/lib/stereo/algorithm/pysctransform/jax_bfgs.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-07-31T10:10:59,988   copying build/lib/stereo/algorithm/pysctransform/fit.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-07-31T10:10:59,992   copying build/lib/stereo/algorithm/pysctransform/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-07-31T10:10:59,995   copying build/lib/stereo/algorithm/pysctransform/fit_glmgp.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-07-31T10:10:59,998   copying build/lib/stereo/algorithm/pysctransform/plotting.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-07-31T10:11:00,002   copying build/lib/stereo/algorithm/scenic.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-07-31T10:11:00,005   copying build/lib/stereo/algorithm/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-07-31T10:11:00,008   copying build/lib/stereo/algorithm/cell_correction.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-07-31T10:11:00,012   copying build/lib/stereo/algorithm/normalization.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-07-31T10:11:00,016   copying build/lib/stereo/algorithm/scale.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-07-31T10:11:00,019   copying build/lib/stereo/algorithm/spatial_hotspot.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-07-31T10:11:00,022   copying build/lib/stereo/algorithm/_louvain.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-07-31T10:11:00,027   creating build/bdist.linux-armv7l/wheel/stereo/io
2022-07-31T10:11:00,028   copying build/lib/stereo/io/h5ad.py -> build/bdist.linux-armv7l/wheel/stereo/io
2022-07-31T10:11:00,033   copying build/lib/stereo/io/writer.py -> build/bdist.linux-armv7l/wheel/stereo/io
2022-07-31T10:11:00,037   copying build/lib/stereo/io/gef.py -> build/bdist.linux-armv7l/wheel/stereo/io
2022-07-31T10:11:00,041   copying build/lib/stereo/io/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/io
2022-07-31T10:11:00,044   copying build/lib/stereo/io/reader.py -> build/bdist.linux-armv7l/wheel/stereo/io
2022-07-31T10:11:00,049   copying build/lib/stereo/__init__.py -> build/bdist.linux-armv7l/wheel/stereo
2022-07-31T10:11:00,053   creating build/bdist.linux-armv7l/wheel/stereo/plots
2022-07-31T10:11:00,056   creating build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2022-07-31T10:11:00,057   copying build/lib/stereo/plots/interact_plot/spatial_cluster.py -> build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2022-07-31T10:11:00,061   copying build/lib/stereo/plots/interact_plot/poly_selection.py -> build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2022-07-31T10:11:00,065   copying build/lib/stereo/plots/interact_plot/interactive_scatter.py -> build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2022-07-31T10:11:00,068   copying build/lib/stereo/plots/interact_plot/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2022-07-31T10:11:00,071   copying build/lib/stereo/plots/violin.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2022-07-31T10:11:00,074   copying build/lib/stereo/plots/marker_genes.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2022-07-31T10:11:00,079   copying build/lib/stereo/plots/plot_collection.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2022-07-31T10:11:00,084   copying build/lib/stereo/plots/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2022-07-31T10:11:00,088   creating build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2022-07-31T10:11:00,089   copying build/lib/stereo/plots/_plot_basic/get_stereo_data.py -> build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2022-07-31T10:11:00,092   copying build/lib/stereo/plots/_plot_basic/heatmap_plt.py -> build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2022-07-31T10:11:00,097   copying build/lib/stereo/plots/_plot_basic/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2022-07-31T10:11:00,100   copying build/lib/stereo/plots/scatter.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2022-07-31T10:11:00,105   copying build/lib/stereo/config.py -> build/bdist.linux-armv7l/wheel/stereo
2022-07-31T10:11:00,110   creating build/bdist.linux-armv7l/wheel/stereo/utils
2022-07-31T10:11:00,111   copying build/lib/stereo/utils/data_helper.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2022-07-31T10:11:00,115   copying build/lib/stereo/utils/spmatrix_helper.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2022-07-31T10:11:00,118   copying build/lib/stereo/utils/hvg_utils.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2022-07-31T10:11:00,122   copying build/lib/stereo/utils/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2022-07-31T10:11:00,125   copying build/lib/stereo/utils/time_consume.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2022-07-31T10:11:00,128   copying build/lib/stereo/utils/correlation.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2022-07-31T10:11:00,131   running install_egg_info
2022-07-31T10:11:00,978   Copying stereopy.egg-info to build/bdist.linux-armv7l/wheel/stereopy-0.4.0-py3.7.egg-info
2022-07-31T10:11:01,000   running install_scripts
2022-07-31T10:11:01,372   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-07-31T10:11:01,380   creating build/bdist.linux-armv7l/wheel/stereopy-0.4.0.dist-info/WHEEL
2022-07-31T10:11:01,385   creating '/tmp/pip-wheel-uwybe160/stereopy-0.4.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-07-31T10:11:01,390   adding 'stereo/__init__.py'
2022-07-31T10:11:01,394   adding 'stereo/config.py'
2022-07-31T10:11:01,396   adding 'stereo/log_manager.py'
2022-07-31T10:11:01,400   adding 'stereo/algorithm/__init__.py'
2022-07-31T10:11:01,403   adding 'stereo/algorithm/_louvain.py'
2022-07-31T10:11:01,407   adding 'stereo/algorithm/cell_correction.py'
2022-07-31T10:11:01,409   adding 'stereo/algorithm/dim_reduce.py'
2022-07-31T10:11:01,412   adding 'stereo/algorithm/gaussian_smooth.py'
2022-07-31T10:11:01,416   adding 'stereo/algorithm/highly_variable_genes.py'
2022-07-31T10:11:01,419   adding 'stereo/algorithm/leiden.py'
2022-07-31T10:11:01,423   adding 'stereo/algorithm/mannwhitneyu.py'
2022-07-31T10:11:01,427   adding 'stereo/algorithm/neighbors.py'
2022-07-31T10:11:01,430   adding 'stereo/algorithm/normalization.py'
2022-07-31T10:11:01,432   adding 'stereo/algorithm/phenograph.py'
2022-07-31T10:11:01,435   adding 'stereo/algorithm/scale.py'
2022-07-31T10:11:01,437   adding 'stereo/algorithm/scenic.py'
2022-07-31T10:11:01,440   adding 'stereo/algorithm/spatial_hotspot.py'
2022-07-31T10:11:01,442   adding 'stereo/algorithm/spatial_pattern_score.py'
2022-07-31T10:11:01,445   adding 'stereo/algorithm/statistics.py'
2022-07-31T10:11:01,448   adding 'stereo/algorithm/umap.py'
2022-07-31T10:11:01,451   adding 'stereo/algorithm/pysctransform/__init__.py'
2022-07-31T10:11:01,454   adding 'stereo/algorithm/pysctransform/fit.py'
2022-07-31T10:11:01,456   adding 'stereo/algorithm/pysctransform/fit_glmgp.py'
2022-07-31T10:11:01,459   adding 'stereo/algorithm/pysctransform/jax_bfgs.py'
2022-07-31T10:11:01,462   adding 'stereo/algorithm/pysctransform/plotting.py'
2022-07-31T10:11:01,470   adding 'stereo/algorithm/pysctransform/pysctransform.py'
2022-07-31T10:11:01,474   adding 'stereo/algorithm/pysctransform/r_bw.py'
2022-07-31T10:11:01,477   adding 'stereo/core/__init__.py'
2022-07-31T10:11:01,479   adding 'stereo/core/cell.py'
2022-07-31T10:11:01,482   adding 'stereo/core/data.py'
2022-07-31T10:11:01,484   adding 'stereo/core/gene.py'
2022-07-31T10:11:01,496   adding 'stereo/core/st_pipeline.py'
2022-07-31T10:11:01,500   adding 'stereo/core/stereo_exp_data.py'
2022-07-31T10:11:01,503   adding 'stereo/core/stereo_result.py'
2022-07-31T10:11:01,506   adding 'stereo/core/tool_base.py'
2022-07-31T10:11:01,509   adding 'stereo/image/__init__.py'
2022-07-31T10:11:01,512   adding 'stereo/image/pyramid.py'
2022-07-31T10:11:01,515   adding 'stereo/image/segmentation/__init__.py'
2022-07-31T10:11:01,517   adding 'stereo/image/segmentation/segment.py'
2022-07-31T10:11:01,521   adding 'stereo/image/segmentation/seg_utils/__init__.py'
2022-07-31T10:11:01,525   adding 'stereo/image/segmentation/seg_utils/cell_infer.py'
2022-07-31T10:11:01,530   adding 'stereo/image/segmentation/seg_utils/cell_seg_pipeline.py'
2022-07-31T10:11:01,532   adding 'stereo/image/segmentation/seg_utils/dataset.py'
2022-07-31T10:11:01,536   adding 'stereo/image/segmentation/seg_utils/find_maxima.py'
2022-07-31T10:11:01,539   adding 'stereo/image/segmentation/seg_utils/grade.py'
2022-07-31T10:11:01,541   adding 'stereo/image/segmentation/seg_utils/image.py'
2022-07-31T10:11:01,544   adding 'stereo/image/segmentation/seg_utils/resnet_unet.py'
2022-07-31T10:11:01,547   adding 'stereo/image/segmentation/seg_utils/tissue_seg.py'
2022-07-31T10:11:01,549   adding 'stereo/image/segmentation/seg_utils/tissue_seg_pipeline.py'
2022-07-31T10:11:01,572   adding 'stereo/image/segmentation/seg_utils/utils.py'
2022-07-31T10:11:01,576   adding 'stereo/image/segmentation/seg_utils/models/SE_weight_module.py'
2022-07-31T10:11:01,578   adding 'stereo/image/segmentation/seg_utils/models/__init__.py'
2022-07-31T10:11:01,583   adding 'stereo/image/segmentation/seg_utils/models/epsanet.py'
2022-07-31T10:11:01,586   adding 'stereo/image/segmentation_deepcell/__init__.py'
2022-07-31T10:11:01,589   adding 'stereo/image/segmentation_deepcell/segment.py'
2022-07-31T10:11:01,592   adding 'stereo/image/segmentation_deepcell/seg_utils/__init__.py'
2022-07-31T10:11:01,596   adding 'stereo/image/segmentation_deepcell/seg_utils/cell_infer.py'
2022-07-31T10:11:01,600   adding 'stereo/image/segmentation_deepcell/seg_utils/cell_seg_pipeline.py'
2022-07-31T10:11:01,604   adding 'stereo/image/segmentation_deepcell/seg_utils/find_maxima.py'
2022-07-31T10:11:01,607   adding 'stereo/image/segmentation_deepcell/seg_utils/grade.py'
2022-07-31T10:11:01,610   adding 'stereo/image/segmentation_deepcell/seg_utils/image.py'
2022-07-31T10:11:01,612   adding 'stereo/image/segmentation_deepcell/seg_utils/tissue_seg.py'
2022-07-31T10:11:01,615   adding 'stereo/image/segmentation_deepcell/seg_utils/tissue_seg_pipeline.py'
2022-07-31T10:11:01,621   adding 'stereo/image/segmentation_deepcell/seg_utils/utils.py'
2022-07-31T10:11:01,625   adding 'stereo/image/tissue_cut/__init__.py'
2022-07-31T10:11:01,629   adding 'stereo/image/tissue_cut/pipeline.py'
2022-07-31T10:11:01,632   adding 'stereo/image/tissue_cut/tissue_cut_utils/__init__.py'
2022-07-31T10:11:01,636   adding 'stereo/image/tissue_cut/tissue_cut_utils/tissue_seg_bcdu.py'
2022-07-31T10:11:01,639   adding 'stereo/image/tissue_cut/tissue_cut_utils/tissue_seg_bcdu_model.py'
2022-07-31T10:11:01,641   adding 'stereo/image/tissue_cut/tissue_cut_utils/tissue_seg_bcdu_uity.py'
2022-07-31T10:11:01,645   adding 'stereo/image/tissue_cut/tissue_cut_utils/tissue_seg_net.py'
2022-07-31T10:11:01,648   adding 'stereo/image/tissue_cut/tissue_cut_utils/tissue_seg_utils.py'
2022-07-31T10:11:01,651   adding 'stereo/image/x2tif/__init__.py'
2022-07-31T10:11:01,654   adding 'stereo/image/x2tif/x2tif.py'
2022-07-31T10:11:01,658   adding 'stereo/io/__init__.py'
2022-07-31T10:11:01,660   adding 'stereo/io/gef.py'
2022-07-31T10:11:01,665   adding 'stereo/io/h5ad.py'
2022-07-31T10:11:01,673   adding 'stereo/io/reader.py'
2022-07-31T10:11:01,677   adding 'stereo/io/writer.py'
2022-07-31T10:11:01,681   adding 'stereo/plots/__init__.py'
2022-07-31T10:11:01,685   adding 'stereo/plots/marker_genes.py'
2022-07-31T10:11:01,691   adding 'stereo/plots/plot_collection.py'
2022-07-31T10:11:01,695   adding 'stereo/plots/scatter.py'
2022-07-31T10:11:01,697   adding 'stereo/plots/violin.py'
2022-07-31T10:11:01,700   adding 'stereo/plots/_plot_basic/__init__.py'
2022-07-31T10:11:01,703   adding 'stereo/plots/_plot_basic/get_stereo_data.py'
2022-07-31T10:11:01,707   adding 'stereo/plots/_plot_basic/heatmap_plt.py'
2022-07-31T10:11:01,710   adding 'stereo/plots/interact_plot/__init__.py'
2022-07-31T10:11:01,713   adding 'stereo/plots/interact_plot/interactive_scatter.py'
2022-07-31T10:11:01,716   adding 'stereo/plots/interact_plot/poly_selection.py'
2022-07-31T10:11:01,719   adding 'stereo/plots/interact_plot/spatial_cluster.py'
2022-07-31T10:11:01,722   adding 'stereo/preprocess/__init__.py'
2022-07-31T10:11:01,724   adding 'stereo/preprocess/filter.py'
2022-07-31T10:11:01,727   adding 'stereo/preprocess/normalize.py'
2022-07-31T10:11:01,729   adding 'stereo/preprocess/qc.py'
2022-07-31T10:11:01,732   adding 'stereo/preprocess/sc_transform.py'
2022-07-31T10:11:01,738   adding 'stereo/tools/LR_interaction.py'
2022-07-31T10:11:01,741   adding 'stereo/tools/__init__.py'
2022-07-31T10:11:01,744   adding 'stereo/tools/cell_correct.py'
2022-07-31T10:11:01,747   adding 'stereo/tools/cell_cut.py'
2022-07-31T10:11:01,749   adding 'stereo/tools/cell_segment.py'
2022-07-31T10:11:01,754   adding 'stereo/tools/cell_type_anno.py'
2022-07-31T10:11:01,757   adding 'stereo/tools/cluster.py'
2022-07-31T10:11:01,761   adding 'stereo/tools/clustering.py'
2022-07-31T10:11:01,764   adding 'stereo/tools/dim_reduce.py'
2022-07-31T10:11:01,767   adding 'stereo/tools/find_markers.py'
2022-07-31T10:11:01,770   adding 'stereo/tools/highly_variable_genes.py'
2022-07-31T10:11:01,774   adding 'stereo/tools/spatial_lag.py'
2022-07-31T10:11:01,776   adding 'stereo/tools/spatial_pattern_score.py'
2022-07-31T10:11:01,779   adding 'stereo/utils/__init__.py'
2022-07-31T10:11:01,781   adding 'stereo/utils/correlation.py'
2022-07-31T10:11:01,784   adding 'stereo/utils/data_helper.py'
2022-07-31T10:11:01,787   adding 'stereo/utils/hvg_utils.py'
2022-07-31T10:11:01,789   adding 'stereo/utils/spmatrix_helper.py'
2022-07-31T10:11:01,792   adding 'stereo/utils/time_consume.py'
2022-07-31T10:11:01,796   adding 'stereopy-0.4.0.dist-info/LICENSE'
2022-07-31T10:11:01,799   adding 'stereopy-0.4.0.dist-info/METADATA'
2022-07-31T10:11:01,800   adding 'stereopy-0.4.0.dist-info/WHEEL'
2022-07-31T10:11:01,802   adding 'stereopy-0.4.0.dist-info/top_level.txt'
2022-07-31T10:11:01,805   adding 'stereopy-0.4.0.dist-info/RECORD'
2022-07-31T10:11:01,819   removing build/bdist.linux-armv7l/wheel
2022-07-31T10:11:02,163   Building wheel for stereopy (setup.py): finished with status 'done'
2022-07-31T10:11:02,178   Created wheel for stereopy: filename=stereopy-0.4.0-py3-none-any.whl size=217822 sha256=1d8070e8be8f1f750d8497c9ef431b840146eb8cb0940b46141b19c6062d5bdb
2022-07-31T10:11:02,180   Stored in directory: /tmp/pip-ephem-wheel-cache-_vd3jt8z/wheels/33/0f/d7/bf8dfaf137c1c455aa75d8fc9c0527b2dc4813757b0e17f229
2022-07-31T10:11:02,214 Successfully built stereopy
2022-07-31T10:11:02,237 Removed build tracker: '/tmp/pip-build-tracker-yklq4b8j'