2022-08-02T10:22:20,219 Created temporary directory: /tmp/pip-ephem-wheel-cache-_j0_wvjn
2022-08-02T10:22:20,224 Created temporary directory: /tmp/pip-build-tracker-gvqxw4b5
2022-08-02T10:22:20,225 Initialized build tracking at /tmp/pip-build-tracker-gvqxw4b5
2022-08-02T10:22:20,225 Created build tracker: /tmp/pip-build-tracker-gvqxw4b5
2022-08-02T10:22:20,226 Entered build tracker: /tmp/pip-build-tracker-gvqxw4b5
2022-08-02T10:22:20,227 Created temporary directory: /tmp/pip-wheel-v2bpxwr2
2022-08-02T10:22:20,302 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-08-02T10:22:20,311 2 location(s) to search for versions of pybiotk:
2022-08-02T10:22:20,311 * https://pypi.org/simple/pybiotk/
2022-08-02T10:22:20,311 * https://www.piwheels.org/simple/pybiotk/
2022-08-02T10:22:20,312 Fetching project page and analyzing links: https://pypi.org/simple/pybiotk/
2022-08-02T10:22:20,313 Getting page https://pypi.org/simple/pybiotk/
2022-08-02T10:22:20,316 Found index url https://pypi.org/simple
2022-08-02T10:22:20,433   Found link https://files.pythonhosted.org/packages/36/39/63bca353f534b61d1b4d184594aa908e15c1ed647e1e722bfcf9ee064dbc/pybiotk-1.0.3.tar.gz#sha256=d1084859e25ae3e660f8ebdc6b9e46343b087390472951edcdfe01ebc6893e2f (from https://pypi.org/simple/pybiotk/), version: 1.0.3
2022-08-02T10:22:20,434   Found link https://files.pythonhosted.org/packages/c2/63/fd2b3ca946c51dc23242f873ba230b22d55298bd2eb2df0fe06a648e6849/pybiotk-1.0.4.tar.gz#sha256=54adb083dc66b5545559eedca9edf8df2723583bc40e366cd60ed93ad9248bef (from https://pypi.org/simple/pybiotk/), version: 1.0.4
2022-08-02T10:22:20,434   Found link https://files.pythonhosted.org/packages/67/96/a92ce5cf084e83cb215b8d8e9656d5bcfe22ae834956bd208e796b50da16/pybiotk-1.0.6.tar.gz#sha256=2c2a12e93a4ad036ebd76bf6a0fb6e0564638d18407117935a5f5b82af0617e1 (from https://pypi.org/simple/pybiotk/), version: 1.0.6
2022-08-02T10:22:20,435 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybiotk/
2022-08-02T10:22:20,436 Getting page https://www.piwheels.org/simple/pybiotk/
2022-08-02T10:22:20,438 Found index url https://www.piwheels.org/simple
2022-08-02T10:22:20,670   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp37-cp37m-linux_armv7l.whl#sha256=c2c24578a8c96d074c91314ee034316b005ad82fe94da2f2135b6cca4237b374 (from https://www.piwheels.org/simple/pybiotk/)
2022-08-02T10:22:20,671   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp37-cp37m-linux_armv6l.whl#sha256=c2c24578a8c96d074c91314ee034316b005ad82fe94da2f2135b6cca4237b374 (from https://www.piwheels.org/simple/pybiotk/)
2022-08-02T10:22:20,671   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp39-cp39-linux_armv7l.whl#sha256=50c81a26e08771be990869c49acd65b172ef531d807be2ef54cc44de12463f76 (from https://www.piwheels.org/simple/pybiotk/)
2022-08-02T10:22:20,672   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp39-cp39-linux_armv6l.whl#sha256=50c81a26e08771be990869c49acd65b172ef531d807be2ef54cc44de12463f76 (from https://www.piwheels.org/simple/pybiotk/)
2022-08-02T10:22:20,672   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp37-cp37m-linux_armv7l.whl#sha256=1e5895fe1aa6a3e6127f180defd7a420edf6f8b5f4f1b689995f9758b7286846 (from https://www.piwheels.org/simple/pybiotk/)
2022-08-02T10:22:20,673   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp37-cp37m-linux_armv6l.whl#sha256=1e5895fe1aa6a3e6127f180defd7a420edf6f8b5f4f1b689995f9758b7286846 (from https://www.piwheels.org/simple/pybiotk/)
2022-08-02T10:22:20,673   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=3d07a856b5dfd6012a973e73b174a6b8d70ae723b22a5396f9e1323a3396a327 (from https://www.piwheels.org/simple/pybiotk/)
2022-08-02T10:22:20,674   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=3d07a856b5dfd6012a973e73b174a6b8d70ae723b22a5396f9e1323a3396a327 (from https://www.piwheels.org/simple/pybiotk/)
2022-08-02T10:22:20,674   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=68c34ca6656477c1de6691804d909876e1f42817256079672904805fc0971aca (from https://www.piwheels.org/simple/pybiotk/)
2022-08-02T10:22:20,675   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=68c34ca6656477c1de6691804d909876e1f42817256079672904805fc0971aca (from https://www.piwheels.org/simple/pybiotk/)
2022-08-02T10:22:20,675 Skipping link: not a file: https://www.piwheels.org/simple/pybiotk/
2022-08-02T10:22:20,676 Skipping link: not a file: https://pypi.org/simple/pybiotk/
2022-08-02T10:22:20,720 Given no hashes to check 1 links for project 'pybiotk': discarding no candidates
2022-08-02T10:22:20,762 Collecting pybiotk==1.0.6
2022-08-02T10:22:20,767   Created temporary directory: /tmp/pip-unpack-bfpl22xb
2022-08-02T10:22:20,865   Downloading pybiotk-1.0.6.tar.gz (89 kB)
2022-08-02T10:22:21,414   Added pybiotk==1.0.6 from https://files.pythonhosted.org/packages/67/96/a92ce5cf084e83cb215b8d8e9656d5bcfe22ae834956bd208e796b50da16/pybiotk-1.0.6.tar.gz#sha256=2c2a12e93a4ad036ebd76bf6a0fb6e0564638d18407117935a5f5b82af0617e1 to build tracker '/tmp/pip-build-tracker-gvqxw4b5'
2022-08-02T10:22:21,431   Created temporary directory: /tmp/pip-build-env-gx22jb_u
2022-08-02T10:22:21,452   Created temporary directory: /tmp/pip-standalone-pip-atdo0hh8
2022-08-02T10:22:23,775   Installing build dependencies: started
2022-08-02T10:22:23,777   Running command pip subprocess to install build dependencies
2022-08-02T10:22:35,004   Using pip 22.1.2 from /tmp/pip-standalone-pip-atdo0hh8/__env_pip__.zip/pip (python 3.9)
2022-08-02T10:22:36,711   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-08-02T10:22:40,714   Collecting setuptools>=46.1.0
2022-08-02T10:22:40,999     Using cached https://www.piwheels.org/simple/setuptools/setuptools-63.3.0-py3-none-any.whl (1.2 MB)
2022-08-02T10:22:42,051   Collecting setuptools_scm[toml]>=5
2022-08-02T10:22:42,090     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.0.5-py3-none-any.whl (42 kB)
2022-08-02T10:22:42,639   Collecting wheel
2022-08-02T10:22:42,673     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-08-02T10:22:46,358   Collecting Cython>=0.29.30
2022-08-02T10:22:47,385     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB)
2022-08-02T10:22:48,065   Collecting typing-extensions
2022-08-02T10:22:48,099     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.3.0-py3-none-any.whl (25 kB)
2022-08-02T10:22:48,376   Collecting tomli>=1.0.0
2022-08-02T10:22:48,407     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2022-08-02T10:22:48,836   Collecting packaging>=20.0
2022-08-02T10:22:48,869     Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB)
2022-08-02T10:22:50,514   Collecting pyparsing!=3.0.5,>=2.0.2
2022-08-02T10:22:50,552     Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.9-py3-none-any.whl (98 kB)
2022-08-02T10:22:58,474   Installing collected packages: wheel, typing-extensions, tomli, setuptools, pyparsing, Cython, packaging, setuptools_scm
2022-08-02T10:22:58,767     Creating /tmp/pip-build-env-gx22jb_u/overlay/bin
2022-08-02T10:22:58,771     changing mode of /tmp/pip-build-env-gx22jb_u/overlay/bin/wheel to 755
2022-08-02T10:23:11,390     changing mode of /tmp/pip-build-env-gx22jb_u/overlay/bin/cygdb to 755
2022-08-02T10:23:11,395     changing mode of /tmp/pip-build-env-gx22jb_u/overlay/bin/cython to 755
2022-08-02T10:23:11,410     changing mode of /tmp/pip-build-env-gx22jb_u/overlay/bin/cythonize to 755
2022-08-02T10:23:12,092   Successfully installed Cython-0.29.32 packaging-21.3 pyparsing-3.0.9 setuptools-63.3.0 setuptools_scm-7.0.5 tomli-2.0.1 typing-extensions-4.3.0 wheel-0.37.1
2022-08-02T10:23:12,294   --- Logging error ---
2022-08-02T10:23:12,312   Traceback (most recent call last):
2022-08-02T10:23:12,313     File "/tmp/pip-standalone-pip-atdo0hh8/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit
2022-08-02T10:23:12,313       self.console.print(renderable, overflow="ignore", crop=False, style=style)
2022-08-02T10:23:12,313     File "/tmp/pip-standalone-pip-atdo0hh8/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print
2022-08-02T10:23:12,314       extend(render(renderable, render_options))
2022-08-02T10:23:12,314     File "/tmp/pip-standalone-pip-atdo0hh8/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render
2022-08-02T10:23:12,314       for render_output in iter_render:
2022-08-02T10:23:12,315     File "/tmp/pip-standalone-pip-atdo0hh8/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__
2022-08-02T10:23:12,315       for line in lines:
2022-08-02T10:23:12,315     File "/tmp/pip-standalone-pip-atdo0hh8/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines
2022-08-02T10:23:12,316       for segment in segments:
2022-08-02T10:23:12,316     File "/tmp/pip-standalone-pip-atdo0hh8/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render
2022-08-02T10:23:12,316       renderable = rich_cast(renderable)
2022-08-02T10:23:12,317     File "/tmp/pip-standalone-pip-atdo0hh8/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast
2022-08-02T10:23:12,317       renderable = cast_method()
2022-08-02T10:23:12,317     File "/tmp/pip-standalone-pip-atdo0hh8/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__
2022-08-02T10:23:12,318       pip_cmd = get_best_invocation_for_this_pip()
2022-08-02T10:23:12,318     File "/tmp/pip-standalone-pip-atdo0hh8/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip
2022-08-02T10:23:12,318       if found_executable and os.path.samefile(
2022-08-02T10:23:12,319     File "/usr/lib/python3.9/genericpath.py", line 101, in samefile
2022-08-02T10:23:12,319       s2 = os.stat(f2)
2022-08-02T10:23:12,320   FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9'
2022-08-02T10:23:12,320   Call stack:
2022-08-02T10:23:12,323     File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main
2022-08-02T10:23:12,324       return _run_code(code, main_globals, None,
2022-08-02T10:23:12,324     File "/usr/lib/python3.9/runpy.py", line 87, in _run_code
2022-08-02T10:23:12,324       exec(code, run_globals)
2022-08-02T10:23:12,325     File "/tmp/pip-standalone-pip-atdo0hh8/__env_pip__.zip/pip/__main__.py", line 31, in <module>
2022-08-02T10:23:12,325       sys.exit(_main())
2022-08-02T10:23:12,325     File "/tmp/pip-standalone-pip-atdo0hh8/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main
2022-08-02T10:23:12,326       return command.main(cmd_args)
2022-08-02T10:23:12,326     File "/tmp/pip-standalone-pip-atdo0hh8/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main
2022-08-02T10:23:12,326       return self._main(args)
2022-08-02T10:23:12,327     File "/tmp/pip-standalone-pip-atdo0hh8/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main
2022-08-02T10:23:12,327       self.handle_pip_version_check(options)
2022-08-02T10:23:12,328     File "/tmp/pip-standalone-pip-atdo0hh8/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check
2022-08-02T10:23:12,328       pip_self_version_check(session, options)
2022-08-02T10:23:12,328     File "/tmp/pip-standalone-pip-atdo0hh8/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check
2022-08-02T10:23:12,328       logger.info("[present-rich] %s", upgrade_prompt)
2022-08-02T10:23:12,329     File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info
2022-08-02T10:23:12,329       self._log(INFO, msg, args, **kwargs)
2022-08-02T10:23:12,329     File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log
2022-08-02T10:23:12,330       self.handle(record)
2022-08-02T10:23:12,330     File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle
2022-08-02T10:23:12,330       self.callHandlers(record)
2022-08-02T10:23:12,330     File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers
2022-08-02T10:23:12,331       hdlr.handle(record)
2022-08-02T10:23:12,331     File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle
2022-08-02T10:23:12,331       self.emit(record)
2022-08-02T10:23:12,332     File "/tmp/pip-standalone-pip-atdo0hh8/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit
2022-08-02T10:23:12,332       self.handleError(record)
2022-08-02T10:23:12,332   Message: '[present-rich] %s'
2022-08-02T10:23:12,333   Arguments: (UpgradePrompt(old='22.1.2', new='22.2'),)
2022-08-02T10:23:12,966   Installing build dependencies: finished with status 'done'
2022-08-02T10:23:12,994   Getting requirements to build wheel: started
2022-08-02T10:23:12,996   Running command Getting requirements to build wheel
2022-08-02T10:23:19,639   Compiling src/bx/bitset.pyx because it changed.
2022-08-02T10:23:19,641   Compiling src/bx/cluster.pyx because it changed.
2022-08-02T10:23:19,641   Compiling src/bx/intersection.pyx because it changed.
2022-08-02T10:23:19,642   [1/3] Cythonizing src/bx/bitset.pyx
2022-08-02T10:23:19,642   [2/3] Cythonizing src/bx/cluster.pyx
2022-08-02T10:23:19,642   [3/3] Cythonizing src/bx/intersection.pyx
2022-08-02T10:23:23,686   running egg_info
2022-08-02T10:23:24,287   writing src/pybiotk.egg-info/PKG-INFO
2022-08-02T10:23:24,849   writing dependency_links to src/pybiotk.egg-info/dependency_links.txt
2022-08-02T10:23:26,534   writing entry points to src/pybiotk.egg-info/entry_points.txt
2022-08-02T10:23:27,656   writing requirements to src/pybiotk.egg-info/requires.txt
2022-08-02T10:23:28,217   writing top-level names to src/pybiotk.egg-info/top_level.txt
2022-08-02T10:23:29,645   listing git files failed - pretending there aren't any
2022-08-02T10:23:29,671   reading manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-08-02T10:23:29,689   adding license file 'LICENSE.txt'
2022-08-02T10:23:29,705   writing manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-08-02T10:23:30,069   Getting requirements to build wheel: finished with status 'done'
2022-08-02T10:23:30,097   Created temporary directory: /tmp/pip-modern-metadata-t6muwo2y
2022-08-02T10:23:30,103   Preparing metadata (pyproject.toml): started
2022-08-02T10:23:30,105   Running command Preparing metadata (pyproject.toml)
2022-08-02T10:23:37,169   running dist_info
2022-08-02T10:23:37,787   creating /tmp/pip-modern-metadata-t6muwo2y/pybiotk.egg-info
2022-08-02T10:23:38,379   writing /tmp/pip-modern-metadata-t6muwo2y/pybiotk.egg-info/PKG-INFO
2022-08-02T10:23:38,938   writing dependency_links to /tmp/pip-modern-metadata-t6muwo2y/pybiotk.egg-info/dependency_links.txt
2022-08-02T10:23:40,608   writing entry points to /tmp/pip-modern-metadata-t6muwo2y/pybiotk.egg-info/entry_points.txt
2022-08-02T10:23:41,720   writing requirements to /tmp/pip-modern-metadata-t6muwo2y/pybiotk.egg-info/requires.txt
2022-08-02T10:23:42,277   writing top-level names to /tmp/pip-modern-metadata-t6muwo2y/pybiotk.egg-info/top_level.txt
2022-08-02T10:23:42,280   writing manifest file '/tmp/pip-modern-metadata-t6muwo2y/pybiotk.egg-info/SOURCES.txt'
2022-08-02T10:23:43,685   listing git files failed - pretending there aren't any
2022-08-02T10:23:43,707   reading manifest file '/tmp/pip-modern-metadata-t6muwo2y/pybiotk.egg-info/SOURCES.txt'
2022-08-02T10:23:43,712   adding license file 'LICENSE.txt'
2022-08-02T10:23:43,723   writing manifest file '/tmp/pip-modern-metadata-t6muwo2y/pybiotk.egg-info/SOURCES.txt'
2022-08-02T10:23:43,727   creating '/tmp/pip-modern-metadata-t6muwo2y/pybiotk-1.0.6.dist-info'
2022-08-02T10:23:43,953   adding license file "LICENSE.txt" (matched pattern "LICENSE.txt")
2022-08-02T10:23:44,293   Preparing metadata (pyproject.toml): finished with status 'done'
2022-08-02T10:23:44,308   Source in /tmp/pip-wheel-v2bpxwr2/pybiotk_3d11f30aefcd4cf787a074d22d043664 has version 1.0.6, which satisfies requirement pybiotk==1.0.6 from https://files.pythonhosted.org/packages/67/96/a92ce5cf084e83cb215b8d8e9656d5bcfe22ae834956bd208e796b50da16/pybiotk-1.0.6.tar.gz#sha256=2c2a12e93a4ad036ebd76bf6a0fb6e0564638d18407117935a5f5b82af0617e1
2022-08-02T10:23:44,310   Removed pybiotk==1.0.6 from https://files.pythonhosted.org/packages/67/96/a92ce5cf084e83cb215b8d8e9656d5bcfe22ae834956bd208e796b50da16/pybiotk-1.0.6.tar.gz#sha256=2c2a12e93a4ad036ebd76bf6a0fb6e0564638d18407117935a5f5b82af0617e1 from build tracker '/tmp/pip-build-tracker-gvqxw4b5'
2022-08-02T10:23:44,320 Created temporary directory: /tmp/pip-unpack-jplsqyq_
2022-08-02T10:23:44,321 Building wheels for collected packages: pybiotk
2022-08-02T10:23:44,330   Created temporary directory: /tmp/pip-wheel-2nbjx6iq
2022-08-02T10:23:44,330   Destination directory: /tmp/pip-wheel-2nbjx6iq
2022-08-02T10:23:44,335   Building wheel for pybiotk (pyproject.toml): started
2022-08-02T10:23:44,337   Running command Building wheel for pybiotk (pyproject.toml)
2022-08-02T10:23:50,848   running bdist_wheel
2022-08-02T10:23:51,542   running build
2022-08-02T10:23:51,542   running build_py
2022-08-02T10:23:52,130   creating build/lib.linux-armv7l-cpython-39
2022-08-02T10:23:52,131   creating build/lib.linux-armv7l-cpython-39/pybiotk
2022-08-02T10:23:52,133   copying src/pybiotk/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk
2022-08-02T10:23:52,137   creating build/lib.linux-armv7l-cpython-39/stream
2022-08-02T10:23:52,139   copying src/stream/pipe.py -> build/lib.linux-armv7l-cpython-39/stream
2022-08-02T10:23:52,143   copying src/stream/stream.py -> build/lib.linux-armv7l-cpython-39/stream
2022-08-02T10:23:52,147   copying src/stream/__init__.py -> build/lib.linux-armv7l-cpython-39/stream
2022-08-02T10:23:52,152   creating build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-08-02T10:23:52,153   copying src/pybiotk/io/gtf.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-08-02T10:23:52,158   copying src/pybiotk/io/bw.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-08-02T10:23:52,162   copying src/pybiotk/io/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-08-02T10:23:52,165   copying src/pybiotk/io/bam.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-08-02T10:23:52,170   copying src/pybiotk/io/fastq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-08-02T10:23:52,173   copying src/pybiotk/io/fasta.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-08-02T10:23:52,177   copying src/pybiotk/io/bed.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-08-02T10:23:52,182   creating build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-08-02T10:23:52,183   copying src/pybiotk/data/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-08-02T10:23:52,189   creating build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-08-02T10:23:52,191   copying src/pybiotk/convert/fq2fasta.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-08-02T10:23:52,194   copying src/pybiotk/convert/bam2fastx.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-08-02T10:23:52,198   copying src/pybiotk/convert/gtf2bed.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-08-02T10:23:52,202   copying src/pybiotk/convert/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-08-02T10:23:52,205   copying src/pybiotk/convert/bampe_order_by_name.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-08-02T10:23:52,208   copying src/pybiotk/convert/bed2bedgraph.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-08-02T10:23:52,213   creating build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-08-02T10:23:52,214   copying src/pybiotk/annodb/merged_transcript.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-08-02T10:23:52,219   copying src/pybiotk/annodb/gene.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-08-02T10:23:52,225   copying src/pybiotk/annodb/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-08-02T10:23:52,228   copying src/pybiotk/annodb/transcript.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-08-02T10:23:52,233   copying src/pybiotk/annodb/anno.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-08-02T10:23:52,240   creating build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,242   copying src/pybiotk/utils/fasta_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,246   copying src/pybiotk/utils/reference_count.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,251   copying src/pybiotk/utils/merge_subseq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,254   copying src/pybiotk/utils/gtf_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,257   copying src/pybiotk/utils/rmats_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,260   copying src/pybiotk/utils/pyanno.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,264   copying src/pybiotk/utils/fastq_uniq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,268   copying src/pybiotk/utils/summary_log.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,272   copying src/pybiotk/utils/subseq_analysis.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,275   copying src/pybiotk/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,278   copying src/pybiotk/utils/seq_random.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,282   copying src/pybiotk/utils/merge_row.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,286   copying src/pybiotk/utils/bam_random.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,290   copying src/pybiotk/utils/fragment_size.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,294   copying src/pybiotk/utils/read_tables.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,298   copying src/pybiotk/utils/fastq_join.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,302   copying src/pybiotk/utils/utils.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,307   copying src/pybiotk/utils/reverse_fastx.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,311   copying src/pybiotk/utils/normalize.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-02T10:23:52,316   creating build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-08-02T10:23:52,318   copying src/pybiotk/intervals/grange.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-08-02T10:23:52,322   copying src/pybiotk/intervals/merge_intervals.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-08-02T10:23:52,326   copying src/pybiotk/intervals/merge_bed3.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-08-02T10:23:52,330   copying src/pybiotk/intervals/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-08-02T10:23:52,332   running egg_info
2022-08-02T10:23:53,524   writing src/pybiotk.egg-info/PKG-INFO
2022-08-02T10:23:54,077   writing dependency_links to src/pybiotk.egg-info/dependency_links.txt
2022-08-02T10:23:55,725   writing entry points to src/pybiotk.egg-info/entry_points.txt
2022-08-02T10:23:56,826   writing requirements to src/pybiotk.egg-info/requires.txt
2022-08-02T10:23:57,378   writing top-level names to src/pybiotk.egg-info/top_level.txt
2022-08-02T10:23:57,506   listing git files failed - pretending there aren't any
2022-08-02T10:23:57,528   reading manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-08-02T10:23:57,544   adding license file 'LICENSE.txt'
2022-08-02T10:23:57,560   writing manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-08-02T10:23:57,570   copying src/pybiotk/data/hg38.chrom.sizes -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-08-02T10:23:57,575   copying src/pybiotk/data/mm10.chrom.sizes -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-08-02T10:23:57,591   running build_ext
2022-08-02T10:23:57,603   building 'pybiotk.bx.bitset' extension
2022-08-02T10:23:57,605   creating build/temp.linux-armv7l-cpython-39
2022-08-02T10:23:57,605   creating build/temp.linux-armv7l-cpython-39/build
2022-08-02T10:23:57,606   creating build/temp.linux-armv7l-cpython-39/build/src
2022-08-02T10:23:57,608   creating build/temp.linux-armv7l-cpython-39/build/src/bx
2022-08-02T10:23:57,610   creating build/temp.linux-armv7l-cpython-39/src
2022-08-02T10:23:57,610   creating build/temp.linux-armv7l-cpython-39/src/bx
2022-08-02T10:23:57,612   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c build/src/bx/bitset.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/bitset.o
2022-08-02T10:24:10,729   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/binBits.c -o build/temp.linux-armv7l-cpython-39/src/bx/binBits.o
2022-08-02T10:24:11,668   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/bits.c -o build/temp.linux-armv7l-cpython-39/src/bx/bits.o
2022-08-02T10:24:12,612   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/common.c -o build/temp.linux-armv7l-cpython-39/src/bx/common.o
2022-08-02T10:24:13,047   creating build/lib.linux-armv7l-cpython-39/pybiotk/bx
2022-08-02T10:24:13,048   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/bitset.o build/temp.linux-armv7l-cpython-39/src/bx/binBits.o build/temp.linux-armv7l-cpython-39/src/bx/bits.o build/temp.linux-armv7l-cpython-39/src/bx/common.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so
2022-08-02T10:24:13,387   building 'pybiotk.bx.cluster' extension
2022-08-02T10:24:13,389   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c build/src/bx/cluster.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/cluster.o
2022-08-02T10:24:18,249   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/cluster.c -o build/temp.linux-armv7l-cpython-39/src/bx/cluster.o
2022-08-02T10:24:19,404   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/cluster.o build/temp.linux-armv7l-cpython-39/src/bx/cluster.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so
2022-08-02T10:24:19,655   building 'pybiotk.bx.intersection' extension
2022-08-02T10:24:19,656   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c build/src/bx/intersection.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/intersection.o
2022-08-02T10:24:40,732   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/intersection.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so
2022-08-02T10:24:41,039   running build_scripts
2022-08-02T10:24:41,041   creating build/scripts-3.9
2022-08-02T10:24:41,044   copying rscripts/plot_peak_width.R -> build/scripts-3.9
2022-08-02T10:24:41,049   copying rscripts/plot_hist.R -> build/scripts-3.9
2022-08-02T10:24:41,053   copying rscripts/plot_rep_cor.R -> build/scripts-3.9
2022-08-02T10:24:41,058   copying rscripts/plot_corr.R -> build/scripts-3.9
2022-08-02T10:24:41,062   copying rscripts/peak_anno.R -> build/scripts-3.9
2022-08-02T10:24:41,067   copying rscripts/plot_bar.R -> build/scripts-3.9
2022-08-02T10:24:41,071   copying rscripts/plot_summary.R -> build/scripts-3.9
2022-08-02T10:24:41,077   copying rscripts/diff_expr_edgeR.R -> build/scripts-3.9
2022-08-02T10:24:41,082   copying rscripts/plot_deeptools_fragmentsize.R -> build/scripts-3.9
2022-08-02T10:24:41,086   copying rscripts/plot_venn.R -> build/scripts-3.9
2022-08-02T10:24:41,090   copying rscripts/plot_FRiPs.R -> build/scripts-3.9
2022-08-02T10:24:41,095   copying rscripts/diff_expr_DESeq2.R -> build/scripts-3.9
2022-08-02T10:24:41,099   copying rscripts/diff_expr_plot.R -> build/scripts-3.9
2022-08-02T10:24:41,105   copying scripts/fasta_u2t.sh -> build/scripts-3.9
2022-08-02T10:24:41,110   copying scripts/merge_subseq.sh -> build/scripts-3.9
2022-08-02T10:24:41,114   copying scripts/gtfparser.sh -> build/scripts-3.9
2022-08-02T10:24:41,118   copying scripts/get_chrom_length.sh -> build/scripts-3.9
2022-08-02T10:24:41,122   copying scripts/fasta_len.sh -> build/scripts-3.9
2022-08-02T10:24:41,126   copying scripts/fastq_len.sh -> build/scripts-3.9
2022-08-02T10:24:41,131   copying scripts/remove_duplicates.sh -> build/scripts-3.9
2022-08-02T10:24:42,341   installing to build/bdist.linux-armv7l/wheel
2022-08-02T10:24:42,341   running install
2022-08-02T10:24:42,403   running install_lib
2022-08-02T10:24:42,993   creating build/bdist.linux-armv7l
2022-08-02T10:24:42,994   creating build/bdist.linux-armv7l/wheel
2022-08-02T10:24:42,997   creating build/bdist.linux-armv7l/wheel/pybiotk
2022-08-02T10:24:43,000   creating build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-08-02T10:24:43,002   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-08-02T10:24:43,016   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-08-02T10:24:43,055   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-08-02T10:24:43,094   creating build/bdist.linux-armv7l/wheel/pybiotk/io
2022-08-02T10:24:43,096   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/gtf.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-08-02T10:24:43,101   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bw.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-08-02T10:24:43,105   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-08-02T10:24:43,108   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bam.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-08-02T10:24:43,112   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/fastq.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-08-02T10:24:43,116   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/fasta.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-08-02T10:24:43,120   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bed.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-08-02T10:24:43,125   creating build/bdist.linux-armv7l/wheel/pybiotk/data
2022-08-02T10:24:43,127   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/pybiotk/data
2022-08-02T10:24:43,131   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/data
2022-08-02T10:24:43,134   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/mm10.chrom.sizes -> build/bdist.linux-armv7l/wheel/pybiotk/data
2022-08-02T10:24:43,139   creating build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-08-02T10:24:43,140   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/fq2fasta.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-08-02T10:24:43,144   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bam2fastx.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-08-02T10:24:43,147   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/gtf2bed.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-08-02T10:24:43,151   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-08-02T10:24:43,154   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bampe_order_by_name.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-08-02T10:24:43,158   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bed2bedgraph.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-08-02T10:24:43,162   creating build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-08-02T10:24:43,163   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/merged_transcript.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-08-02T10:24:43,168   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/gene.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-08-02T10:24:43,172   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-08-02T10:24:43,176   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/transcript.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-08-02T10:24:43,180   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/anno.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-08-02T10:24:43,184   copying build/lib.linux-armv7l-cpython-39/pybiotk/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk
2022-08-02T10:24:43,188   creating build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,189   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fasta_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,193   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/reference_count.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,196   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/merge_subseq.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,200   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/gtf_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,203   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/rmats_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,206   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/pyanno.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,211   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastq_uniq.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,214   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/summary_log.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,218   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/subseq_analysis.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,222   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,225   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/seq_random.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,229   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/merge_row.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,233   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/bam_random.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,236   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fragment_size.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,240   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/read_tables.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,243   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastq_join.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,247   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/utils.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,251   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/reverse_fastx.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,255   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/normalize.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-02T10:24:43,259   creating build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-08-02T10:24:43,260   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/grange.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-08-02T10:24:43,265   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/merge_intervals.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-08-02T10:24:43,268   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/merge_bed3.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-08-02T10:24:43,272   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-08-02T10:24:43,276   creating build/bdist.linux-armv7l/wheel/stream
2022-08-02T10:24:43,277   copying build/lib.linux-armv7l-cpython-39/stream/pipe.py -> build/bdist.linux-armv7l/wheel/stream
2022-08-02T10:24:43,282   copying build/lib.linux-armv7l-cpython-39/stream/stream.py -> build/bdist.linux-armv7l/wheel/stream
2022-08-02T10:24:43,296   copying build/lib.linux-armv7l-cpython-39/stream/__init__.py -> build/bdist.linux-armv7l/wheel/stream
2022-08-02T10:24:43,299   running install_egg_info
2022-08-02T10:24:43,894   Copying src/pybiotk.egg-info to build/bdist.linux-armv7l/wheel/pybiotk-1.0.6-py3.9.egg-info
2022-08-02T10:24:43,925   running install_scripts
2022-08-02T10:24:43,980   creating build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data
2022-08-02T10:24:43,980   creating build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:43,982   copying build/scripts-3.9/plot_peak_width.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:43,987   copying build/scripts-3.9/plot_hist.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:43,990   copying build/scripts-3.9/plot_rep_cor.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:43,994   copying build/scripts-3.9/fasta_u2t.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:43,998   copying build/scripts-3.9/plot_corr.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:44,001   copying build/scripts-3.9/peak_anno.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:44,004   copying build/scripts-3.9/plot_bar.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:44,008   copying build/scripts-3.9/plot_summary.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:44,012   copying build/scripts-3.9/merge_subseq.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:44,015   copying build/scripts-3.9/diff_expr_edgeR.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:44,020   copying build/scripts-3.9/plot_deeptools_fragmentsize.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:44,023   copying build/scripts-3.9/plot_venn.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:44,027   copying build/scripts-3.9/plot_FRiPs.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:44,030   copying build/scripts-3.9/gtfparser.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:44,034   copying build/scripts-3.9/diff_expr_DESeq2.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:44,038   copying build/scripts-3.9/get_chrom_length.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:44,041   copying build/scripts-3.9/fasta_len.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:44,044   copying build/scripts-3.9/fastq_len.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:44,047   copying build/scripts-3.9/remove_duplicates.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:44,051   copying build/scripts-3.9/diff_expr_plot.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts
2022-08-02T10:24:44,054   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/plot_peak_width.R to 755
2022-08-02T10:24:44,055   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/plot_hist.R to 755
2022-08-02T10:24:44,055   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/plot_rep_cor.R to 755
2022-08-02T10:24:44,056   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/fasta_u2t.sh to 755
2022-08-02T10:24:44,056   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/plot_corr.R to 755
2022-08-02T10:24:44,057   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/peak_anno.R to 755
2022-08-02T10:24:44,058   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/plot_bar.R to 755
2022-08-02T10:24:44,058   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/plot_summary.R to 755
2022-08-02T10:24:44,059   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/merge_subseq.sh to 755
2022-08-02T10:24:44,059   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/diff_expr_edgeR.R to 755
2022-08-02T10:24:44,060   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/plot_deeptools_fragmentsize.R to 755
2022-08-02T10:24:44,060   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/plot_venn.R to 755
2022-08-02T10:24:44,060   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/plot_FRiPs.R to 755
2022-08-02T10:24:44,061   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/gtfparser.sh to 755
2022-08-02T10:24:44,061   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/diff_expr_DESeq2.R to 755
2022-08-02T10:24:44,062   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/get_chrom_length.sh to 755
2022-08-02T10:24:44,063   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/fasta_len.sh to 755
2022-08-02T10:24:44,063   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/fastq_len.sh to 755
2022-08-02T10:24:44,063   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/remove_duplicates.sh to 755
2022-08-02T10:24:44,064   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.data/scripts/diff_expr_plot.R to 755
2022-08-02T10:24:44,168   adding license file "LICENSE.txt" (matched pattern "LICENSE.txt")
2022-08-02T10:24:44,218   creating build/bdist.linux-armv7l/wheel/pybiotk-1.0.6.dist-info/WHEEL
2022-08-02T10:24:44,224   creating '/tmp/pip-wheel-2nbjx6iq/tmp0n2sn52a/pybiotk-1.0.6-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-08-02T10:24:44,228   adding 'pybiotk/__init__.py'
2022-08-02T10:24:44,232   adding 'pybiotk/annodb/__init__.py'
2022-08-02T10:24:44,234   adding 'pybiotk/annodb/anno.py'
2022-08-02T10:24:44,238   adding 'pybiotk/annodb/gene.py'
2022-08-02T10:24:44,242   adding 'pybiotk/annodb/merged_transcript.py'
2022-08-02T10:24:44,245   adding 'pybiotk/annodb/transcript.py'
2022-08-02T10:24:44,477   adding 'pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so'
2022-08-02T10:24:44,571   adding 'pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so'
2022-08-02T10:24:44,898   adding 'pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so'
2022-08-02T10:24:44,914   adding 'pybiotk/convert/__init__.py'
2022-08-02T10:24:44,917   adding 'pybiotk/convert/bam2fastx.py'
2022-08-02T10:24:44,919   adding 'pybiotk/convert/bampe_order_by_name.py'
2022-08-02T10:24:44,922   adding 'pybiotk/convert/bed2bedgraph.py'
2022-08-02T10:24:44,924   adding 'pybiotk/convert/fq2fasta.py'
2022-08-02T10:24:44,926   adding 'pybiotk/convert/gtf2bed.py'
2022-08-02T10:24:44,930   adding 'pybiotk/data/__init__.py'
2022-08-02T10:24:44,935   adding 'pybiotk/data/hg38.chrom.sizes'
2022-08-02T10:24:44,938   adding 'pybiotk/data/mm10.chrom.sizes'
2022-08-02T10:24:44,941   adding 'pybiotk/intervals/__init__.py'
2022-08-02T10:24:44,944   adding 'pybiotk/intervals/grange.py'
2022-08-02T10:24:44,946   adding 'pybiotk/intervals/merge_bed3.py'
2022-08-02T10:24:44,949   adding 'pybiotk/intervals/merge_intervals.py'
2022-08-02T10:24:44,952   adding 'pybiotk/io/__init__.py'
2022-08-02T10:24:44,955   adding 'pybiotk/io/bam.py'
2022-08-02T10:24:44,958   adding 'pybiotk/io/bed.py'
2022-08-02T10:24:44,961   adding 'pybiotk/io/bw.py'
2022-08-02T10:24:44,964   adding 'pybiotk/io/fasta.py'
2022-08-02T10:24:44,967   adding 'pybiotk/io/fastq.py'
2022-08-02T10:24:44,971   adding 'pybiotk/io/gtf.py'
2022-08-02T10:24:44,975   adding 'pybiotk/utils/__init__.py'
2022-08-02T10:24:44,977   adding 'pybiotk/utils/bam_random.py'
2022-08-02T10:24:44,979   adding 'pybiotk/utils/fasta_filter.py'
2022-08-02T10:24:44,982   adding 'pybiotk/utils/fastq_join.py'
2022-08-02T10:24:44,985   adding 'pybiotk/utils/fastq_uniq.py'
2022-08-02T10:24:44,987   adding 'pybiotk/utils/fragment_size.py'
2022-08-02T10:24:44,990   adding 'pybiotk/utils/gtf_filter.py'
2022-08-02T10:24:44,993   adding 'pybiotk/utils/merge_row.py'
2022-08-02T10:24:44,995   adding 'pybiotk/utils/merge_subseq.py'
2022-08-02T10:24:44,998   adding 'pybiotk/utils/normalize.py'
2022-08-02T10:24:45,002   adding 'pybiotk/utils/pyanno.py'
2022-08-02T10:24:45,004   adding 'pybiotk/utils/read_tables.py'
2022-08-02T10:24:45,006   adding 'pybiotk/utils/reference_count.py'
2022-08-02T10:24:45,009   adding 'pybiotk/utils/reverse_fastx.py'
2022-08-02T10:24:45,012   adding 'pybiotk/utils/rmats_filter.py'
2022-08-02T10:24:45,014   adding 'pybiotk/utils/seq_random.py'
2022-08-02T10:24:45,017   adding 'pybiotk/utils/subseq_analysis.py'
2022-08-02T10:24:45,020   adding 'pybiotk/utils/summary_log.py'
2022-08-02T10:24:45,023   adding 'pybiotk/utils/utils.py'
2022-08-02T10:24:45,029   adding 'pybiotk-1.0.6.data/scripts/diff_expr_DESeq2.R'
2022-08-02T10:24:45,032   adding 'pybiotk-1.0.6.data/scripts/diff_expr_edgeR.R'
2022-08-02T10:24:45,035   adding 'pybiotk-1.0.6.data/scripts/diff_expr_plot.R'
2022-08-02T10:24:45,037   adding 'pybiotk-1.0.6.data/scripts/fasta_len.sh'
2022-08-02T10:24:45,039   adding 'pybiotk-1.0.6.data/scripts/fasta_u2t.sh'
2022-08-02T10:24:45,041   adding 'pybiotk-1.0.6.data/scripts/fastq_len.sh'
2022-08-02T10:24:45,044   adding 'pybiotk-1.0.6.data/scripts/get_chrom_length.sh'
2022-08-02T10:24:45,046   adding 'pybiotk-1.0.6.data/scripts/gtfparser.sh'
2022-08-02T10:24:45,048   adding 'pybiotk-1.0.6.data/scripts/merge_subseq.sh'
2022-08-02T10:24:45,051   adding 'pybiotk-1.0.6.data/scripts/peak_anno.R'
2022-08-02T10:24:45,053   adding 'pybiotk-1.0.6.data/scripts/plot_FRiPs.R'
2022-08-02T10:24:45,056   adding 'pybiotk-1.0.6.data/scripts/plot_bar.R'
2022-08-02T10:24:45,058   adding 'pybiotk-1.0.6.data/scripts/plot_corr.R'
2022-08-02T10:24:45,061   adding 'pybiotk-1.0.6.data/scripts/plot_deeptools_fragmentsize.R'
2022-08-02T10:24:45,064   adding 'pybiotk-1.0.6.data/scripts/plot_hist.R'
2022-08-02T10:24:45,066   adding 'pybiotk-1.0.6.data/scripts/plot_peak_width.R'
2022-08-02T10:24:45,069   adding 'pybiotk-1.0.6.data/scripts/plot_rep_cor.R'
2022-08-02T10:24:45,072   adding 'pybiotk-1.0.6.data/scripts/plot_summary.R'
2022-08-02T10:24:45,074   adding 'pybiotk-1.0.6.data/scripts/plot_venn.R'
2022-08-02T10:24:45,077   adding 'pybiotk-1.0.6.data/scripts/remove_duplicates.sh'
2022-08-02T10:24:45,082   adding 'stream/__init__.py'
2022-08-02T10:24:45,086   adding 'stream/pipe.py'
2022-08-02T10:24:45,090   adding 'stream/stream.py'
2022-08-02T10:24:45,092   adding 'pybiotk-1.0.6.dist-info/LICENSE.txt'
2022-08-02T10:24:45,094   adding 'pybiotk-1.0.6.dist-info/METADATA'
2022-08-02T10:24:45,096   adding 'pybiotk-1.0.6.dist-info/WHEEL'
2022-08-02T10:24:45,098   adding 'pybiotk-1.0.6.dist-info/entry_points.txt'
2022-08-02T10:24:45,099   adding 'pybiotk-1.0.6.dist-info/top_level.txt'
2022-08-02T10:24:45,102   adding 'pybiotk-1.0.6.dist-info/RECORD'
2022-08-02T10:24:45,127   removing build/bdist.linux-armv7l/wheel
2022-08-02T10:24:45,519   Building wheel for pybiotk (pyproject.toml): finished with status 'done'
2022-08-02T10:24:45,560   Created wheel for pybiotk: filename=pybiotk-1.0.6-cp39-cp39-linux_armv7l.whl size=552476 sha256=3ca3fc7f0e19a74789369a1ab6ee666b4658db1d6547739760037140b35b7e3e
2022-08-02T10:24:45,563   Stored in directory: /tmp/pip-ephem-wheel-cache-_j0_wvjn/wheels/33/8f/ef/7a7504df27b42ae7cd2f0abc29c8d4e50c3a4f1056028c19a3
2022-08-02T10:24:45,592 Successfully built pybiotk
2022-08-02T10:24:45,636 Removed build tracker: '/tmp/pip-build-tracker-gvqxw4b5'