2022-08-02T14:36:02,095 Created temporary directory: /tmp/pip-ephem-wheel-cache-bebugiyr 2022-08-02T14:36:02,100 Created temporary directory: /tmp/pip-build-tracker-z7z_5oxi 2022-08-02T14:36:02,101 Initialized build tracking at /tmp/pip-build-tracker-z7z_5oxi 2022-08-02T14:36:02,101 Created build tracker: /tmp/pip-build-tracker-z7z_5oxi 2022-08-02T14:36:02,102 Entered build tracker: /tmp/pip-build-tracker-z7z_5oxi 2022-08-02T14:36:02,103 Created temporary directory: /tmp/pip-wheel-ynurambc 2022-08-02T14:36:02,174 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-02T14:36:02,187 2 location(s) to search for versions of structuregraph-helpers: 2022-08-02T14:36:02,187 * https://pypi.org/simple/structuregraph-helpers/ 2022-08-02T14:36:02,187 * https://www.piwheels.org/simple/structuregraph-helpers/ 2022-08-02T14:36:02,188 Fetching project page and analyzing links: https://pypi.org/simple/structuregraph-helpers/ 2022-08-02T14:36:02,189 Getting page https://pypi.org/simple/structuregraph-helpers/ 2022-08-02T14:36:02,193 Found index url https://pypi.org/simple 2022-08-02T14:36:02,316 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/01/c0/ef7f514effe7fca5576abc753abd6336340dfa9ee534a9521c7e6c42829d/structuregraph_helpers-0.0.1-py3-none-any.whl#sha256=5534a4d78540e21f58d31ec5b52cee8e38c836217c087910c8eaab47541dfc8b (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T14:36:02,318 Found link https://files.pythonhosted.org/packages/19/a6/efc4f35cda870ce9eb691a1c84fa019da6d83f2f46e659620968493dc15a/structuregraph_helpers-0.0.1.tar.gz#sha256=4ecf9d1f686686ccc0d90373dd1159c3a5fca8e8fb4a941da8cca9119d481742 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.1 2022-08-02T14:36:02,319 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/2b/27/08d4cbfb51990845488cc126c7d2b1fcc1669afc7a544eba4b1299da8c3c/structuregraph_helpers-0.0.2-py3-none-any.whl#sha256=fd3007fea665b053e3cf0a8d899844d13473c58956df03932f675158fd2e8ff6 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T14:36:02,320 Found link https://files.pythonhosted.org/packages/6d/e7/a1c928f29f3b8946a670e480e4367cd3b7fe226565e6d68508754cf7a4ca/structuregraph_helpers-0.0.2.tar.gz#sha256=6e19f28faf763044e8bf13b8cb2984dfcc20122bdd337d6fd4071521b0b0bb25 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.2 2022-08-02T14:36:02,321 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/08/8f/3992b64303a0b684282c217ad32c9f5dea17ef8a9c3d9ae86b2ac2065590/structuregraph_helpers-0.0.3-py3-none-any.whl#sha256=fb376a72410a74c3bdb29d15367c822fb285e38ae1c61ab4763d712582a4c138 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T14:36:02,322 Found link https://files.pythonhosted.org/packages/9b/52/93f84e96204724f84c9bd1fd2b17a74e33da267ec9071c329d1470cf1a61/structuregraph_helpers-0.0.3.tar.gz#sha256=dd9e996a1872c6c494fe527faf38cbb3630b01c5efeccacbb49f27443119b08a (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.3 2022-08-02T14:36:02,323 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/79/ca/8bee7a6c5ddb8e07134ef0bd5c58f42126567b6249a659c365aeeed47dfe/structuregraph_helpers-0.0.4-py3-none-any.whl#sha256=464a767857c10c2629dfb8f818e580c2a7164a55b540e08b12697f4441e85514 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T14:36:02,324 Found link https://files.pythonhosted.org/packages/c9/92/22d06cb7b4f5db2e5d82bb9f83fcdb8a9240ead77b6a1b67aea1c1b31b3f/structuregraph_helpers-0.0.4.tar.gz#sha256=8b21a4cf58de1920715ee4ffaf2933ac0a808b7a495382ec9e7020a82b7b74f6 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.4 2022-08-02T14:36:02,325 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/10/f4/6161d3b18c7b1d45bf77feaebd04e13b71037e456b3bb7f8dfaa22cbd615/structuregraph_helpers-0.0.5-py3-none-any.whl#sha256=bdeb9df129b79d2d5365a514a4dfc3886fad1dfcb7ead7d15606f20d4503baf8 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T14:36:02,326 Found link https://files.pythonhosted.org/packages/f9/23/f971acfac7f00b63230f00a8da56c7d1c2e971037e3d18722df1bec66990/structuregraph_helpers-0.0.5.tar.gz#sha256=3f0613cf2014b28f514d6910f1f98a6d9b9fb20179074ca7b56df52a7ea69d34 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.5 2022-08-02T14:36:02,327 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/e1/6e/45323d2e6f23eecabc687e121462ccabb9a0a9c2c8a54791accae01ca785/structuregraph_helpers-0.0.6-py3-none-any.whl#sha256=c3d3956c70138e1f468cfc0af6ca0360bc4748b108d793827e7e081fe5d1e007 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T14:36:02,328 Found link https://files.pythonhosted.org/packages/f9/97/5db1d476190262fe28cb639c441ae76cbd224f8cd9e0fb23901e215f2494/structuregraph_helpers-0.0.6.tar.gz#sha256=11f2973443130b436a53791c9dc4c9b9458a6c83b61ae9b2e2045dd091d884a7 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.6 2022-08-02T14:36:02,329 Fetching project page and analyzing links: https://www.piwheels.org/simple/structuregraph-helpers/ 2022-08-02T14:36:02,329 Getting page https://www.piwheels.org/simple/structuregraph-helpers/ 2022-08-02T14:36:02,331 Found index url https://www.piwheels.org/simple 2022-08-02T14:36:02,576 Skipping link: No binaries permitted for structuregraph-helpers: https://www.piwheels.org/simple/structuregraph-helpers/structuregraph_helpers-0.0.5-py3-none-any.whl#sha256=5ce5669d24ba789399370f56c9e79d952d2cb259965d88bfea56ef1ce60962f6 (from https://www.piwheels.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T14:36:02,577 Skipping link: No binaries permitted for structuregraph-helpers: https://www.piwheels.org/simple/structuregraph-helpers/structuregraph_helpers-0.0.4-py3-none-any.whl#sha256=aac66180026a322c4934b020cadfe2d70f58f63fee20de28af218e1dc3be1118 (from https://www.piwheels.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T14:36:02,577 Skipping link: No binaries permitted for structuregraph-helpers: https://www.piwheels.org/simple/structuregraph-helpers/structuregraph_helpers-0.0.3-py3-none-any.whl#sha256=52128c96011a76af29b07b1dcd3a8ccdec17b45d75b9612453fc63e7b679c6ed (from https://www.piwheels.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T14:36:02,578 Skipping link: No binaries permitted for structuregraph-helpers: https://www.piwheels.org/simple/structuregraph-helpers/structuregraph_helpers-0.0.2-py3-none-any.whl#sha256=5f3d4a20eb1f96524faab0fc32f6fdd8b35219a86fed7a35eaebcb9c53b381d8 (from https://www.piwheels.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T14:36:02,578 Skipping link: No binaries permitted for structuregraph-helpers: https://www.piwheels.org/simple/structuregraph-helpers/structuregraph_helpers-0.0.1-py3-none-any.whl#sha256=1c71e483a87e57887da2b6d2743b669d8f5fbeef78aac71164eb26ba7c7e22f2 (from https://www.piwheels.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T14:36:02,579 Skipping link: not a file: https://www.piwheels.org/simple/structuregraph-helpers/ 2022-08-02T14:36:02,579 Skipping link: not a file: https://pypi.org/simple/structuregraph-helpers/ 2022-08-02T14:36:02,626 Given no hashes to check 1 links for project 'structuregraph-helpers': discarding no candidates 2022-08-02T14:36:02,667 Collecting structuregraph-helpers==0.0.6 2022-08-02T14:36:02,672 Created temporary directory: /tmp/pip-unpack-ighqfrt4 2022-08-02T14:36:03,296 Downloading structuregraph_helpers-0.0.6.tar.gz (94 kB) 2022-08-02T14:36:03,638 Added structuregraph-helpers==0.0.6 from https://files.pythonhosted.org/packages/f9/97/5db1d476190262fe28cb639c441ae76cbd224f8cd9e0fb23901e215f2494/structuregraph_helpers-0.0.6.tar.gz#sha256=11f2973443130b436a53791c9dc4c9b9458a6c83b61ae9b2e2045dd091d884a7 to build tracker '/tmp/pip-build-tracker-z7z_5oxi' 2022-08-02T14:36:03,645 Created temporary directory: /tmp/pip-build-env-nu29jeuv 2022-08-02T14:36:03,666 Created temporary directory: /tmp/pip-standalone-pip-x_vgnpp5 2022-08-02T14:36:05,989 Installing build dependencies: started 2022-08-02T14:36:05,991 Running command pip subprocess to install build dependencies 2022-08-02T14:36:17,321 Using pip 22.1.2 from /tmp/pip-standalone-pip-x_vgnpp5/__env_pip__.zip/pip (python 3.9) 2022-08-02T14:36:18,866 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-02T14:36:22,982 Collecting setuptools>=35.0.2 2022-08-02T14:36:23,242 Using cached https://www.piwheels.org/simple/setuptools/setuptools-63.3.0-py3-none-any.whl (1.2 MB) 2022-08-02T14:36:28,367 Installing collected packages: setuptools 2022-08-02T14:36:33,700 Successfully installed setuptools-63.3.0 2022-08-02T14:36:33,894 --- Logging error --- 2022-08-02T14:36:33,911 Traceback (most recent call last): 2022-08-02T14:36:33,912 File "/tmp/pip-standalone-pip-x_vgnpp5/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-08-02T14:36:33,912 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-08-02T14:36:33,912 File "/tmp/pip-standalone-pip-x_vgnpp5/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-08-02T14:36:33,913 extend(render(renderable, render_options)) 2022-08-02T14:36:33,913 File "/tmp/pip-standalone-pip-x_vgnpp5/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-08-02T14:36:33,913 for render_output in iter_render: 2022-08-02T14:36:33,914 File "/tmp/pip-standalone-pip-x_vgnpp5/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-08-02T14:36:33,914 for line in lines: 2022-08-02T14:36:33,914 File "/tmp/pip-standalone-pip-x_vgnpp5/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-08-02T14:36:33,915 for segment in segments: 2022-08-02T14:36:33,915 File "/tmp/pip-standalone-pip-x_vgnpp5/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-08-02T14:36:33,915 renderable = rich_cast(renderable) 2022-08-02T14:36:33,916 File "/tmp/pip-standalone-pip-x_vgnpp5/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-08-02T14:36:33,916 renderable = cast_method() 2022-08-02T14:36:33,916 File "/tmp/pip-standalone-pip-x_vgnpp5/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-08-02T14:36:33,917 pip_cmd = get_best_invocation_for_this_pip() 2022-08-02T14:36:33,917 File "/tmp/pip-standalone-pip-x_vgnpp5/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip 2022-08-02T14:36:33,917 if found_executable and os.path.samefile( 2022-08-02T14:36:33,918 File "/usr/lib/python3.9/genericpath.py", line 101, in samefile 2022-08-02T14:36:33,918 s2 = os.stat(f2) 2022-08-02T14:36:33,918 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9' 2022-08-02T14:36:33,918 Call stack: 2022-08-02T14:36:33,922 File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main 2022-08-02T14:36:33,923 return _run_code(code, main_globals, None, 2022-08-02T14:36:33,923 File "/usr/lib/python3.9/runpy.py", line 87, in _run_code 2022-08-02T14:36:33,923 exec(code, run_globals) 2022-08-02T14:36:33,924 File "/tmp/pip-standalone-pip-x_vgnpp5/__env_pip__.zip/pip/__main__.py", line 31, in 2022-08-02T14:36:33,924 sys.exit(_main()) 2022-08-02T14:36:33,924 File "/tmp/pip-standalone-pip-x_vgnpp5/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-08-02T14:36:33,925 return command.main(cmd_args) 2022-08-02T14:36:33,925 File "/tmp/pip-standalone-pip-x_vgnpp5/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-08-02T14:36:33,925 return self._main(args) 2022-08-02T14:36:33,926 File "/tmp/pip-standalone-pip-x_vgnpp5/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-08-02T14:36:33,926 self.handle_pip_version_check(options) 2022-08-02T14:36:33,926 File "/tmp/pip-standalone-pip-x_vgnpp5/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-08-02T14:36:33,927 pip_self_version_check(session, options) 2022-08-02T14:36:33,927 File "/tmp/pip-standalone-pip-x_vgnpp5/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-08-02T14:36:33,927 logger.info("[present-rich] %s", upgrade_prompt) 2022-08-02T14:36:33,928 File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info 2022-08-02T14:36:33,928 self._log(INFO, msg, args, **kwargs) 2022-08-02T14:36:33,928 File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log 2022-08-02T14:36:33,929 self.handle(record) 2022-08-02T14:36:33,929 File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle 2022-08-02T14:36:33,929 self.callHandlers(record) 2022-08-02T14:36:33,930 File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers 2022-08-02T14:36:33,930 hdlr.handle(record) 2022-08-02T14:36:33,930 File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle 2022-08-02T14:36:33,930 self.emit(record) 2022-08-02T14:36:33,931 File "/tmp/pip-standalone-pip-x_vgnpp5/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-08-02T14:36:33,931 self.handleError(record) 2022-08-02T14:36:33,931 Message: '[present-rich] %s' 2022-08-02T14:36:33,932 Arguments: (UpgradePrompt(old='22.1.2', new='22.2'),) 2022-08-02T14:36:34,424 Installing build dependencies: finished with status 'done' 2022-08-02T14:36:34,452 Getting requirements to build wheel: started 2022-08-02T14:36:34,454 Running command Getting requirements to build wheel 2022-08-02T14:36:36,427 /usr/local/lib/python3.9/dist-packages/setuptools/config/setupcfg.py:459: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-08-02T14:36:36,429 warnings.warn(msg, warning_class) 2022-08-02T14:36:39,126 running egg_info 2022-08-02T14:36:39,718 writing src/structuregraph_helpers.egg-info/PKG-INFO 2022-08-02T14:36:40,282 writing dependency_links to src/structuregraph_helpers.egg-info/dependency_links.txt 2022-08-02T14:36:41,956 writing entry points to src/structuregraph_helpers.egg-info/entry_points.txt 2022-08-02T14:36:43,074 writing requirements to src/structuregraph_helpers.egg-info/requires.txt 2022-08-02T14:36:43,632 writing top-level names to src/structuregraph_helpers.egg-info/top_level.txt 2022-08-02T14:36:44,300 reading manifest file 'src/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-02T14:36:44,316 reading manifest template 'MANIFEST.in' 2022-08-02T14:36:44,327 no previously-included directories found matching 'scripts' 2022-08-02T14:36:44,328 no previously-included directories found matching 'notebooks' 2022-08-02T14:36:44,344 warning: no files found matching '*.png' under directory 'docs/source' 2022-08-02T14:36:44,346 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2022-08-02T14:36:44,347 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2022-08-02T14:36:44,348 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-08-02T14:36:44,350 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2022-08-02T14:36:44,351 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2022-08-02T14:36:44,353 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2022-08-02T14:36:44,354 warning: no previously-included files found matching 'tox.ini' 2022-08-02T14:36:44,355 warning: no previously-included files found matching '.flake8' 2022-08-02T14:36:44,356 warning: no previously-included files found matching '.bumpversion.cfg' 2022-08-02T14:36:44,357 warning: no previously-included files found matching '.readthedocs.yml' 2022-08-02T14:36:44,358 warning: no previously-included files found matching 'CONTRIBUTING.rst' 2022-08-02T14:36:44,358 adding license file 'LICENSE' 2022-08-02T14:36:44,368 writing manifest file 'src/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-02T14:36:44,576 Getting requirements to build wheel: finished with status 'done' 2022-08-02T14:36:44,602 Created temporary directory: /tmp/pip-standalone-pip-l__vla_x 2022-08-02T14:36:46,890 Installing backend dependencies: started 2022-08-02T14:36:46,892 Running command pip subprocess to install backend dependencies 2022-08-02T14:36:58,149 Using pip 22.1.2 from /tmp/pip-standalone-pip-l__vla_x/__env_pip__.zip/pip (python 3.9) 2022-08-02T14:36:59,704 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-02T14:37:00,625 Collecting wheel 2022-08-02T14:37:00,662 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-08-02T14:37:04,966 Installing collected packages: wheel 2022-08-02T14:37:05,258 Creating /tmp/pip-build-env-nu29jeuv/normal/bin 2022-08-02T14:37:05,262 changing mode of /tmp/pip-build-env-nu29jeuv/normal/bin/wheel to 755 2022-08-02T14:37:05,289 Successfully installed wheel-0.37.1 2022-08-02T14:37:05,482 --- Logging error --- 2022-08-02T14:37:05,498 Traceback (most recent call last): 2022-08-02T14:37:05,498 File "/tmp/pip-standalone-pip-l__vla_x/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-08-02T14:37:05,499 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-08-02T14:37:05,499 File "/tmp/pip-standalone-pip-l__vla_x/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-08-02T14:37:05,499 extend(render(renderable, render_options)) 2022-08-02T14:37:05,500 File "/tmp/pip-standalone-pip-l__vla_x/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-08-02T14:37:05,500 for render_output in iter_render: 2022-08-02T14:37:05,500 File "/tmp/pip-standalone-pip-l__vla_x/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-08-02T14:37:05,501 for line in lines: 2022-08-02T14:37:05,501 File "/tmp/pip-standalone-pip-l__vla_x/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-08-02T14:37:05,501 for segment in segments: 2022-08-02T14:37:05,502 File "/tmp/pip-standalone-pip-l__vla_x/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-08-02T14:37:05,502 renderable = rich_cast(renderable) 2022-08-02T14:37:05,502 File "/tmp/pip-standalone-pip-l__vla_x/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-08-02T14:37:05,503 renderable = cast_method() 2022-08-02T14:37:05,503 File "/tmp/pip-standalone-pip-l__vla_x/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-08-02T14:37:05,503 pip_cmd = get_best_invocation_for_this_pip() 2022-08-02T14:37:05,504 File "/tmp/pip-standalone-pip-l__vla_x/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip 2022-08-02T14:37:05,504 if found_executable and os.path.samefile( 2022-08-02T14:37:05,504 File "/usr/lib/python3.9/genericpath.py", line 101, in samefile 2022-08-02T14:37:05,505 s2 = os.stat(f2) 2022-08-02T14:37:05,505 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9' 2022-08-02T14:37:05,505 Call stack: 2022-08-02T14:37:05,509 File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main 2022-08-02T14:37:05,509 return _run_code(code, main_globals, None, 2022-08-02T14:37:05,510 File "/usr/lib/python3.9/runpy.py", line 87, in _run_code 2022-08-02T14:37:05,510 exec(code, run_globals) 2022-08-02T14:37:05,510 File "/tmp/pip-standalone-pip-l__vla_x/__env_pip__.zip/pip/__main__.py", line 31, in 2022-08-02T14:37:05,511 sys.exit(_main()) 2022-08-02T14:37:05,511 File "/tmp/pip-standalone-pip-l__vla_x/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-08-02T14:37:05,511 return command.main(cmd_args) 2022-08-02T14:37:05,512 File "/tmp/pip-standalone-pip-l__vla_x/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-08-02T14:37:05,512 return self._main(args) 2022-08-02T14:37:05,512 File "/tmp/pip-standalone-pip-l__vla_x/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-08-02T14:37:05,513 self.handle_pip_version_check(options) 2022-08-02T14:37:05,513 File "/tmp/pip-standalone-pip-l__vla_x/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-08-02T14:37:05,513 pip_self_version_check(session, options) 2022-08-02T14:37:05,513 File "/tmp/pip-standalone-pip-l__vla_x/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-08-02T14:37:05,514 logger.info("[present-rich] %s", upgrade_prompt) 2022-08-02T14:37:05,514 File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info 2022-08-02T14:37:05,514 self._log(INFO, msg, args, **kwargs) 2022-08-02T14:37:05,515 File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log 2022-08-02T14:37:05,515 self.handle(record) 2022-08-02T14:37:05,515 File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle 2022-08-02T14:37:05,515 self.callHandlers(record) 2022-08-02T14:37:05,516 File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers 2022-08-02T14:37:05,516 hdlr.handle(record) 2022-08-02T14:37:05,516 File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle 2022-08-02T14:37:05,516 self.emit(record) 2022-08-02T14:37:05,517 File "/tmp/pip-standalone-pip-l__vla_x/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-08-02T14:37:05,517 self.handleError(record) 2022-08-02T14:37:05,517 Message: '[present-rich] %s' 2022-08-02T14:37:05,518 Arguments: (UpgradePrompt(old='22.1.2', new='22.2'),) 2022-08-02T14:37:05,941 Installing backend dependencies: finished with status 'done' 2022-08-02T14:37:05,964 Created temporary directory: /tmp/pip-modern-metadata-s9iz8kh_ 2022-08-02T14:37:05,971 Preparing metadata (pyproject.toml): started 2022-08-02T14:37:05,973 Running command Preparing metadata (pyproject.toml) 2022-08-02T14:37:09,759 /usr/local/lib/python3.9/dist-packages/setuptools/config/setupcfg.py:459: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-08-02T14:37:09,761 warnings.warn(msg, warning_class) 2022-08-02T14:37:10,432 running dist_info 2022-08-02T14:37:11,060 creating /tmp/pip-modern-metadata-s9iz8kh_/structuregraph_helpers.egg-info 2022-08-02T14:37:11,664 writing /tmp/pip-modern-metadata-s9iz8kh_/structuregraph_helpers.egg-info/PKG-INFO 2022-08-02T14:37:12,234 writing dependency_links to /tmp/pip-modern-metadata-s9iz8kh_/structuregraph_helpers.egg-info/dependency_links.txt 2022-08-02T14:37:13,948 writing entry points to /tmp/pip-modern-metadata-s9iz8kh_/structuregraph_helpers.egg-info/entry_points.txt 2022-08-02T14:37:15,088 writing requirements to /tmp/pip-modern-metadata-s9iz8kh_/structuregraph_helpers.egg-info/requires.txt 2022-08-02T14:37:15,655 writing top-level names to /tmp/pip-modern-metadata-s9iz8kh_/structuregraph_helpers.egg-info/top_level.txt 2022-08-02T14:37:15,658 writing manifest file '/tmp/pip-modern-metadata-s9iz8kh_/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-02T14:37:16,344 reading manifest file '/tmp/pip-modern-metadata-s9iz8kh_/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-02T14:37:16,348 reading manifest template 'MANIFEST.in' 2022-08-02T14:37:16,365 no previously-included directories found matching 'scripts' 2022-08-02T14:37:16,366 no previously-included directories found matching 'notebooks' 2022-08-02T14:37:16,380 warning: no files found matching '*.png' under directory 'docs/source' 2022-08-02T14:37:16,382 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2022-08-02T14:37:16,383 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2022-08-02T14:37:16,384 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-08-02T14:37:16,385 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2022-08-02T14:37:16,386 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2022-08-02T14:37:16,388 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2022-08-02T14:37:16,390 warning: no previously-included files found matching 'tox.ini' 2022-08-02T14:37:16,390 warning: no previously-included files found matching '.flake8' 2022-08-02T14:37:16,391 warning: no previously-included files found matching '.bumpversion.cfg' 2022-08-02T14:37:16,392 warning: no previously-included files found matching '.readthedocs.yml' 2022-08-02T14:37:16,393 warning: no previously-included files found matching 'CONTRIBUTING.rst' 2022-08-02T14:37:16,393 adding license file 'LICENSE' 2022-08-02T14:37:16,401 writing manifest file '/tmp/pip-modern-metadata-s9iz8kh_/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-02T14:37:16,404 creating '/tmp/pip-modern-metadata-s9iz8kh_/structuregraph_helpers-0.0.6.dist-info' 2022-08-02T14:37:16,889 Preparing metadata (pyproject.toml): finished with status 'done' 2022-08-02T14:37:16,906 Source in /tmp/pip-wheel-ynurambc/structuregraph-helpers_6f8a2bd841c94f72a78b3baba8658bd4 has version 0.0.6, which satisfies requirement structuregraph-helpers==0.0.6 from https://files.pythonhosted.org/packages/f9/97/5db1d476190262fe28cb639c441ae76cbd224f8cd9e0fb23901e215f2494/structuregraph_helpers-0.0.6.tar.gz#sha256=11f2973443130b436a53791c9dc4c9b9458a6c83b61ae9b2e2045dd091d884a7 2022-08-02T14:37:16,908 Removed structuregraph-helpers==0.0.6 from https://files.pythonhosted.org/packages/f9/97/5db1d476190262fe28cb639c441ae76cbd224f8cd9e0fb23901e215f2494/structuregraph_helpers-0.0.6.tar.gz#sha256=11f2973443130b436a53791c9dc4c9b9458a6c83b61ae9b2e2045dd091d884a7 from build tracker '/tmp/pip-build-tracker-z7z_5oxi' 2022-08-02T14:37:16,924 Created temporary directory: /tmp/pip-unpack-9kr3rz9i 2022-08-02T14:37:16,925 Building wheels for collected packages: structuregraph-helpers 2022-08-02T14:37:16,936 Created temporary directory: /tmp/pip-wheel-ksfc3vjr 2022-08-02T14:37:16,936 Destination directory: /tmp/pip-wheel-ksfc3vjr 2022-08-02T14:37:16,941 Building wheel for structuregraph-helpers (pyproject.toml): started 2022-08-02T14:37:16,943 Running command Building wheel for structuregraph-helpers (pyproject.toml) 2022-08-02T14:37:20,629 /usr/local/lib/python3.9/dist-packages/setuptools/config/setupcfg.py:459: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-08-02T14:37:20,630 warnings.warn(msg, warning_class) 2022-08-02T14:37:20,831 running bdist_wheel 2022-08-02T14:37:21,985 running build 2022-08-02T14:37:21,986 running build_py 2022-08-02T14:37:22,574 creating build 2022-08-02T14:37:22,574 creating build/lib 2022-08-02T14:37:22,575 creating build/lib/structuregraph_helpers 2022-08-02T14:37:22,577 copying src/structuregraph_helpers/create.py -> build/lib/structuregraph_helpers 2022-08-02T14:37:22,582 copying src/structuregraph_helpers/analysis.py -> build/lib/structuregraph_helpers 2022-08-02T14:37:22,585 copying src/structuregraph_helpers/plotting.py -> build/lib/structuregraph_helpers 2022-08-02T14:37:22,588 copying src/structuregraph_helpers/utils.py -> build/lib/structuregraph_helpers 2022-08-02T14:37:22,591 copying src/structuregraph_helpers/__init__.py -> build/lib/structuregraph_helpers 2022-08-02T14:37:22,595 copying src/structuregraph_helpers/hash.py -> build/lib/structuregraph_helpers 2022-08-02T14:37:22,599 copying src/structuregraph_helpers/delete.py -> build/lib/structuregraph_helpers 2022-08-02T14:37:22,602 copying src/structuregraph_helpers/version.py -> build/lib/structuregraph_helpers 2022-08-02T14:37:22,606 copying src/structuregraph_helpers/subgraph.py -> build/lib/structuregraph_helpers 2022-08-02T14:37:22,610 copying src/structuregraph_helpers/_hasher.py -> build/lib/structuregraph_helpers 2022-08-02T14:37:22,614 copying src/structuregraph_helpers/cli.py -> build/lib/structuregraph_helpers 2022-08-02T14:37:22,617 running egg_info 2022-08-02T14:37:23,806 writing src/structuregraph_helpers.egg-info/PKG-INFO 2022-08-02T14:37:24,360 writing dependency_links to src/structuregraph_helpers.egg-info/dependency_links.txt 2022-08-02T14:37:26,062 writing entry points to src/structuregraph_helpers.egg-info/entry_points.txt 2022-08-02T14:37:27,170 writing requirements to src/structuregraph_helpers.egg-info/requires.txt 2022-08-02T14:37:27,724 writing top-level names to src/structuregraph_helpers.egg-info/top_level.txt 2022-08-02T14:37:27,765 reading manifest file 'src/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-02T14:37:27,773 reading manifest template 'MANIFEST.in' 2022-08-02T14:37:27,782 no previously-included directories found matching 'scripts' 2022-08-02T14:37:27,783 no previously-included directories found matching 'notebooks' 2022-08-02T14:37:27,799 warning: no files found matching '*.png' under directory 'docs/source' 2022-08-02T14:37:27,801 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2022-08-02T14:37:27,802 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2022-08-02T14:37:27,803 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-08-02T14:37:27,805 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2022-08-02T14:37:27,806 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2022-08-02T14:37:27,808 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2022-08-02T14:37:27,809 warning: no previously-included files found matching 'tox.ini' 2022-08-02T14:37:27,810 warning: no previously-included files found matching '.flake8' 2022-08-02T14:37:27,811 warning: no previously-included files found matching '.bumpversion.cfg' 2022-08-02T14:37:27,812 warning: no previously-included files found matching '.readthedocs.yml' 2022-08-02T14:37:27,813 warning: no previously-included files found matching 'CONTRIBUTING.rst' 2022-08-02T14:37:27,813 adding license file 'LICENSE' 2022-08-02T14:37:27,823 writing manifest file 'src/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-02T14:37:27,828 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-02T14:37:27,830 ############################ 2022-08-02T14:37:27,830 # Package would be ignored # 2022-08-02T14:37:27,830 ############################ 2022-08-02T14:37:27,830 Python recognizes 'structuregraph_helpers.data' as an importable package, however it is 2022-08-02T14:37:27,831 included in the distribution as "data". 2022-08-02T14:37:27,831 This behavior is likely to change in future versions of setuptools (and 2022-08-02T14:37:27,831 therefore is considered deprecated). 2022-08-02T14:37:27,832 Please make sure that 'structuregraph_helpers.data' is included as a package by using 2022-08-02T14:37:27,832 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-02T14:37:27,833 You can read more about "package discovery" and "data files" on setuptools 2022-08-02T14:37:27,833 documentation page. 2022-08-02T14:37:27,834 !! 2022-08-02T14:37:27,835 check.warn(importable) 2022-08-02T14:37:27,835 creating build/lib/structuregraph_helpers/data 2022-08-02T14:37:27,836 copying src/structuregraph_helpers/data/atom_typing_radii.yml -> build/lib/structuregraph_helpers/data 2022-08-02T14:37:27,844 copying src/structuregraph_helpers/data/li_radii.yml -> build/lib/structuregraph_helpers/data 2022-08-02T14:37:27,860 copying src/structuregraph_helpers/data/tuned_vesta.yml -> build/lib/structuregraph_helpers/data 2022-08-02T14:37:29,046 installing to build/bdist.linux-armv7l/wheel 2022-08-02T14:37:29,047 running install 2022-08-02T14:37:29,107 running install_lib 2022-08-02T14:37:29,696 creating build/bdist.linux-armv7l 2022-08-02T14:37:29,696 creating build/bdist.linux-armv7l/wheel 2022-08-02T14:37:29,700 creating build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T14:37:29,703 creating build/bdist.linux-armv7l/wheel/structuregraph_helpers/data 2022-08-02T14:37:29,704 copying build/lib/structuregraph_helpers/data/li_radii.yml -> build/bdist.linux-armv7l/wheel/structuregraph_helpers/data 2022-08-02T14:37:29,720 copying build/lib/structuregraph_helpers/data/atom_typing_radii.yml -> build/bdist.linux-armv7l/wheel/structuregraph_helpers/data 2022-08-02T14:37:29,730 copying build/lib/structuregraph_helpers/data/tuned_vesta.yml -> build/bdist.linux-armv7l/wheel/structuregraph_helpers/data 2022-08-02T14:37:29,735 copying build/lib/structuregraph_helpers/create.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T14:37:29,739 copying build/lib/structuregraph_helpers/analysis.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T14:37:29,743 copying build/lib/structuregraph_helpers/plotting.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T14:37:29,746 copying build/lib/structuregraph_helpers/utils.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T14:37:29,749 copying build/lib/structuregraph_helpers/__init__.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T14:37:29,752 copying build/lib/structuregraph_helpers/hash.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T14:37:29,756 copying build/lib/structuregraph_helpers/delete.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T14:37:29,760 copying build/lib/structuregraph_helpers/version.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T14:37:29,764 copying build/lib/structuregraph_helpers/subgraph.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T14:37:29,768 copying build/lib/structuregraph_helpers/_hasher.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T14:37:29,773 copying build/lib/structuregraph_helpers/cli.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T14:37:29,778 running install_egg_info 2022-08-02T14:37:30,384 Copying src/structuregraph_helpers.egg-info to build/bdist.linux-armv7l/wheel/structuregraph_helpers-0.0.6-py3.9.egg-info 2022-08-02T14:37:30,411 running install_scripts 2022-08-02T14:37:30,623 creating build/bdist.linux-armv7l/wheel/structuregraph_helpers-0.0.6.dist-info/WHEEL 2022-08-02T14:37:30,628 creating '/tmp/pip-wheel-ksfc3vjr/tmpq4s9s775/structuregraph_helpers-0.0.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-08-02T14:37:30,633 adding 'structuregraph_helpers/__init__.py' 2022-08-02T14:37:30,639 adding 'structuregraph_helpers/_hasher.py' 2022-08-02T14:37:30,643 adding 'structuregraph_helpers/analysis.py' 2022-08-02T14:37:30,646 adding 'structuregraph_helpers/cli.py' 2022-08-02T14:37:30,650 adding 'structuregraph_helpers/create.py' 2022-08-02T14:37:30,653 adding 'structuregraph_helpers/delete.py' 2022-08-02T14:37:30,657 adding 'structuregraph_helpers/hash.py' 2022-08-02T14:37:30,660 adding 'structuregraph_helpers/plotting.py' 2022-08-02T14:37:30,664 adding 'structuregraph_helpers/subgraph.py' 2022-08-02T14:37:30,667 adding 'structuregraph_helpers/utils.py' 2022-08-02T14:37:30,670 adding 'structuregraph_helpers/version.py' 2022-08-02T14:37:30,701 adding 'structuregraph_helpers/data/atom_typing_radii.yml' 2022-08-02T14:37:30,761 adding 'structuregraph_helpers/data/li_radii.yml' 2022-08-02T14:37:30,776 adding 'structuregraph_helpers/data/tuned_vesta.yml' 2022-08-02T14:37:30,781 adding 'structuregraph_helpers-0.0.6.dist-info/LICENSE' 2022-08-02T14:37:30,784 adding 'structuregraph_helpers-0.0.6.dist-info/METADATA' 2022-08-02T14:37:30,786 adding 'structuregraph_helpers-0.0.6.dist-info/WHEEL' 2022-08-02T14:37:30,788 adding 'structuregraph_helpers-0.0.6.dist-info/entry_points.txt' 2022-08-02T14:37:30,789 adding 'structuregraph_helpers-0.0.6.dist-info/top_level.txt' 2022-08-02T14:37:30,791 adding 'structuregraph_helpers-0.0.6.dist-info/RECORD' 2022-08-02T14:37:30,796 removing build/bdist.linux-armv7l/wheel 2022-08-02T14:37:31,061 Building wheel for structuregraph-helpers (pyproject.toml): finished with status 'done' 2022-08-02T14:37:31,078 Created wheel for structuregraph-helpers: filename=structuregraph_helpers-0.0.6-py3-none-any.whl size=71685 sha256=af38198289fa75bf9cdb538cb5c764f457869c0c95b368d6cd6f09b2271c3084 2022-08-02T14:37:31,080 Stored in directory: /tmp/pip-ephem-wheel-cache-bebugiyr/wheels/8e/e5/ad/1240b8ad7cad38a1005174e90f40c46b21ecf9d840d397c4e7 2022-08-02T14:37:31,106 Successfully built structuregraph-helpers 2022-08-02T14:37:31,117 Removed build tracker: '/tmp/pip-build-tracker-z7z_5oxi'