2022-08-02T14:46:34,645 Created temporary directory: /tmp/pip-ephem-wheel-cache-ujngai3r
2022-08-02T14:46:34,650 Created temporary directory: /tmp/pip-build-tracker-2olp225k
2022-08-02T14:46:34,651 Initialized build tracking at /tmp/pip-build-tracker-2olp225k
2022-08-02T14:46:34,652 Created build tracker: /tmp/pip-build-tracker-2olp225k
2022-08-02T14:46:34,652 Entered build tracker: /tmp/pip-build-tracker-2olp225k
2022-08-02T14:46:34,653 Created temporary directory: /tmp/pip-wheel-_40thg72
2022-08-02T14:46:34,716 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-08-02T14:46:34,724 2 location(s) to search for versions of liftofftools:
2022-08-02T14:46:34,724 * https://pypi.org/simple/liftofftools/
2022-08-02T14:46:34,724 * https://www.piwheels.org/simple/liftofftools/
2022-08-02T14:46:34,725 Fetching project page and analyzing links: https://pypi.org/simple/liftofftools/
2022-08-02T14:46:34,726 Getting page https://pypi.org/simple/liftofftools/
2022-08-02T14:46:34,730 Found index url https://pypi.org/simple
2022-08-02T14:46:34,840   Found link https://files.pythonhosted.org/packages/64/e4/dbd9d0b263ed1cb3125bc8710bd6257bea8a5e408b63d24d93cc6a96f0a4/LiftoffTools-0.3.0.tar.gz#sha256=f36d1eba4cbe3c9cd4ecd568fa9eabb6cbea1c17a19a00db1b79f66a6b276feb (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.3.0
2022-08-02T14:46:34,841   Found link https://files.pythonhosted.org/packages/5b/b0/05822a17173cebb88ff33b76ebe9cc84b6086432abb91824d6c8ba5a649e/LiftoffTools-0.3.1.tar.gz#sha256=91c82cca5674cdb46025aa0defb966f855deeaa947dc5bbee3eb5201b589c278 (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.3.1
2022-08-02T14:46:34,843   Found link https://files.pythonhosted.org/packages/ea/78/76f1304aa56278bdf985dc5bd49c89f213ac2c647275feaef380608f12fa/LiftoffTools-0.4.tar.gz#sha256=4d153344238e27048447d726623ac6f9e2adcb54451b619ac5c8673dbaba64c4 (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.4
2022-08-02T14:46:34,844   Found link https://files.pythonhosted.org/packages/7d/d4/e08037d9ea4722890c29741846507b86ee5a222cfac388b4298300c97e3c/LiftoffTools-0.4.1.tar.gz#sha256=1a74f60f99b5c0395d032504704713a9cc9e0805b74d8b1e2beac4a074d04357 (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.4.1
2022-08-02T14:46:34,845   Found link https://files.pythonhosted.org/packages/d9/72/5c953331024dcb2ca13f3fc2584ebaa7b96acc24bd435a4119f5067dd36a/LiftoffTools-0.4.2.tar.gz#sha256=a0ca8b5384e67dc37be6f5c931142c4174f414becc6818754538e31e347795e2 (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.4.2
2022-08-02T14:46:34,847   Found link https://files.pythonhosted.org/packages/76/68/e32c47499084db2c92780aaa1cc1d55a754c94cc3ca274f51184575d7c39/LiftoffTools-0.4.3.tar.gz#sha256=d2717bb653e60d4548204a6e11e519ffd7e9ada5b5e5feec8abe2d1e9f1b9c5f (from https://pypi.org/simple/liftofftools/) (requires-python:>=3.6), version: 0.4.3
2022-08-02T14:46:34,848 Fetching project page and analyzing links: https://www.piwheels.org/simple/liftofftools/
2022-08-02T14:46:34,848 Getting page https://www.piwheels.org/simple/liftofftools/
2022-08-02T14:46:34,850 Found index url https://www.piwheels.org/simple
2022-08-02T14:46:35,078   Skipping link: No binaries permitted for liftofftools: https://www.piwheels.org/simple/liftofftools/LiftoffTools-0.4.1-py3-none-any.whl#sha256=8f66eeb3911ec224668edb179e9a25ee769d032d4a44cb1c3dc1037df7c6fb57 (from https://www.piwheels.org/simple/liftofftools/) (requires-python:>=3.6)
2022-08-02T14:46:35,078   Skipping link: No binaries permitted for liftofftools: https://www.piwheels.org/simple/liftofftools/LiftoffTools-0.4-py3-none-any.whl#sha256=a4132a138386e47dd5016defc9d8331fbe6a801edd3da6ce29214d6587b6d2eb (from https://www.piwheels.org/simple/liftofftools/) (requires-python:>=3.6)
2022-08-02T14:46:35,079   Skipping link: No binaries permitted for liftofftools: https://www.piwheels.org/simple/liftofftools/LiftoffTools-0.3.1-py3-none-any.whl#sha256=27209759ac60f195ffa4379f4930b89fb066f41a7be568ed8418b24183e6ea82 (from https://www.piwheels.org/simple/liftofftools/) (requires-python:>=3.6)
2022-08-02T14:46:35,079   Skipping link: No binaries permitted for liftofftools: https://www.piwheels.org/simple/liftofftools/LiftoffTools-0.3.0-py3-none-any.whl#sha256=feeceae87ffc8bdc4077f56d6f9a59de79f2e5bdccea7c71ad41e890991a3797 (from https://www.piwheels.org/simple/liftofftools/) (requires-python:>=3.6)
2022-08-02T14:46:35,080 Skipping link: not a file: https://www.piwheels.org/simple/liftofftools/
2022-08-02T14:46:35,081 Skipping link: not a file: https://pypi.org/simple/liftofftools/
2022-08-02T14:46:35,116 Given no hashes to check 1 links for project 'liftofftools': discarding no candidates
2022-08-02T14:46:35,146 Collecting liftofftools==0.4.3
2022-08-02T14:46:35,151   Created temporary directory: /tmp/pip-unpack-jvarpc9x
2022-08-02T14:46:35,398   Downloading LiftoffTools-0.4.3.tar.gz (17 kB)
2022-08-02T14:46:35,542   Added liftofftools==0.4.3 from https://files.pythonhosted.org/packages/76/68/e32c47499084db2c92780aaa1cc1d55a754c94cc3ca274f51184575d7c39/LiftoffTools-0.4.3.tar.gz#sha256=d2717bb653e60d4548204a6e11e519ffd7e9ada5b5e5feec8abe2d1e9f1b9c5f to build tracker '/tmp/pip-build-tracker-2olp225k'
2022-08-02T14:46:35,544   Running setup.py (path:/tmp/pip-wheel-_40thg72/liftofftools_067a33545dda40fda916018bed63a204/setup.py) egg_info for package liftofftools
2022-08-02T14:46:35,546   Created temporary directory: /tmp/pip-pip-egg-info-zpqj4p_c
2022-08-02T14:46:35,546   Preparing metadata (setup.py): started
2022-08-02T14:46:35,548   Running command python setup.py egg_info
2022-08-02T14:46:42,924   running egg_info
2022-08-02T14:46:42,928   creating /tmp/pip-pip-egg-info-zpqj4p_c/LiftoffTools.egg-info
2022-08-02T14:46:43,585   writing /tmp/pip-pip-egg-info-zpqj4p_c/LiftoffTools.egg-info/PKG-INFO
2022-08-02T14:46:44,177   writing dependency_links to /tmp/pip-pip-egg-info-zpqj4p_c/LiftoffTools.egg-info/dependency_links.txt
2022-08-02T14:46:45,935   writing entry points to /tmp/pip-pip-egg-info-zpqj4p_c/LiftoffTools.egg-info/entry_points.txt
2022-08-02T14:46:47,112   writing requirements to /tmp/pip-pip-egg-info-zpqj4p_c/LiftoffTools.egg-info/requires.txt
2022-08-02T14:46:47,706   writing top-level names to /tmp/pip-pip-egg-info-zpqj4p_c/LiftoffTools.egg-info/top_level.txt
2022-08-02T14:46:47,710   writing manifest file '/tmp/pip-pip-egg-info-zpqj4p_c/LiftoffTools.egg-info/SOURCES.txt'
2022-08-02T14:46:48,537   reading manifest file '/tmp/pip-pip-egg-info-zpqj4p_c/LiftoffTools.egg-info/SOURCES.txt'
2022-08-02T14:46:48,546   writing manifest file '/tmp/pip-pip-egg-info-zpqj4p_c/LiftoffTools.egg-info/SOURCES.txt'
2022-08-02T14:46:48,766   Preparing metadata (setup.py): finished with status 'done'
2022-08-02T14:46:48,776   Source in /tmp/pip-wheel-_40thg72/liftofftools_067a33545dda40fda916018bed63a204 has version 0.4.3, which satisfies requirement liftofftools==0.4.3 from https://files.pythonhosted.org/packages/76/68/e32c47499084db2c92780aaa1cc1d55a754c94cc3ca274f51184575d7c39/LiftoffTools-0.4.3.tar.gz#sha256=d2717bb653e60d4548204a6e11e519ffd7e9ada5b5e5feec8abe2d1e9f1b9c5f
2022-08-02T14:46:48,778   Removed liftofftools==0.4.3 from https://files.pythonhosted.org/packages/76/68/e32c47499084db2c92780aaa1cc1d55a754c94cc3ca274f51184575d7c39/LiftoffTools-0.4.3.tar.gz#sha256=d2717bb653e60d4548204a6e11e519ffd7e9ada5b5e5feec8abe2d1e9f1b9c5f from build tracker '/tmp/pip-build-tracker-2olp225k'
2022-08-02T14:46:48,791 Created temporary directory: /tmp/pip-unpack-ak7mpivx
2022-08-02T14:46:48,792 Building wheels for collected packages: liftofftools
2022-08-02T14:46:48,801   Created temporary directory: /tmp/pip-wheel-p7y1m03w
2022-08-02T14:46:48,802   Building wheel for liftofftools (setup.py): started
2022-08-02T14:46:48,804   Destination directory: /tmp/pip-wheel-p7y1m03w
2022-08-02T14:46:48,804   Running command python setup.py bdist_wheel
2022-08-02T14:46:55,647   running bdist_wheel
2022-08-02T14:46:55,866   running build
2022-08-02T14:46:55,867   running build_py
2022-08-02T14:46:56,532   creating build
2022-08-02T14:46:56,533   creating build/lib
2022-08-02T14:46:56,535   creating build/lib/liftofftools
2022-08-02T14:46:56,538   copying liftofftools/liftofftools.py -> build/lib/liftofftools
2022-08-02T14:46:56,543   copying liftofftools/annotation.py -> build/lib/liftofftools
2022-08-02T14:46:56,548   copying liftofftools/alignment.py -> build/lib/liftofftools
2022-08-02T14:46:56,551   copying liftofftools/sequences.py -> build/lib/liftofftools
2022-08-02T14:46:56,555   copying liftofftools/subprocesses.py -> build/lib/liftofftools
2022-08-02T14:46:56,558   copying liftofftools/filepaths.py -> build/lib/liftofftools
2022-08-02T14:46:56,561   copying liftofftools/build_database.py -> build/lib/liftofftools
2022-08-02T14:46:56,565   copying liftofftools/cli_arguments.py -> build/lib/liftofftools
2022-08-02T14:46:56,568   copying liftofftools/__init__.py -> build/lib/liftofftools
2022-08-02T14:46:56,572   creating build/lib/liftofftools/cluster_analysis
2022-08-02T14:46:56,574   copying liftofftools/cluster_analysis/clusters.py -> build/lib/liftofftools/cluster_analysis
2022-08-02T14:46:56,578   copying liftofftools/cluster_analysis/analyze_clusters.py -> build/lib/liftofftools/cluster_analysis
2022-08-02T14:46:56,581   copying liftofftools/cluster_analysis/mmseqs_workflow.py -> build/lib/liftofftools/cluster_analysis
2022-08-02T14:46:56,585   copying liftofftools/cluster_analysis/__init__.py -> build/lib/liftofftools/cluster_analysis
2022-08-02T14:46:56,589   creating build/lib/liftofftools/tests
2022-08-02T14:46:56,591   copying liftofftools/tests/test_all.py -> build/lib/liftofftools/tests
2022-08-02T14:46:56,594   copying liftofftools/tests/__init__.py -> build/lib/liftofftools/tests
2022-08-02T14:46:56,598   creating build/lib/liftofftools/variants
2022-08-02T14:46:56,600   copying liftofftools/variants/variants.py -> build/lib/liftofftools/variants
2022-08-02T14:46:56,604   copying liftofftools/variants/__init__.py -> build/lib/liftofftools/variants
2022-08-02T14:46:56,609   creating build/lib/liftofftools/synteny
2022-08-02T14:46:56,610   copying liftofftools/synteny/plot_gene_order.py -> build/lib/liftofftools/synteny
2022-08-02T14:46:56,615   copying liftofftools/synteny/synteny.py -> build/lib/liftofftools/synteny
2022-08-02T14:46:56,619   copying liftofftools/synteny/__init__.py -> build/lib/liftofftools/synteny
2022-08-02T14:46:57,295   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-08-02T14:46:57,296     setuptools.SetuptoolsDeprecationWarning,
2022-08-02T14:46:57,956   installing to build/bdist.linux-armv7l/wheel
2022-08-02T14:46:57,957   running install
2022-08-02T14:46:58,020   running install_lib
2022-08-02T14:46:58,683   creating build/bdist.linux-armv7l
2022-08-02T14:46:58,684   creating build/bdist.linux-armv7l/wheel
2022-08-02T14:46:58,689   creating build/bdist.linux-armv7l/wheel/liftofftools
2022-08-02T14:46:58,692   creating build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-08-02T14:46:58,695   copying build/lib/liftofftools/cluster_analysis/clusters.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-08-02T14:46:58,699   copying build/lib/liftofftools/cluster_analysis/analyze_clusters.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-08-02T14:46:58,704   copying build/lib/liftofftools/cluster_analysis/mmseqs_workflow.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-08-02T14:46:58,708   copying build/lib/liftofftools/cluster_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/cluster_analysis
2022-08-02T14:46:58,713   creating build/bdist.linux-armv7l/wheel/liftofftools/tests
2022-08-02T14:46:58,714   copying build/lib/liftofftools/tests/test_all.py -> build/bdist.linux-armv7l/wheel/liftofftools/tests
2022-08-02T14:46:58,719   copying build/lib/liftofftools/tests/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/tests
2022-08-02T14:46:58,721   copying build/lib/liftofftools/liftofftools.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-08-02T14:46:58,726   creating build/bdist.linux-armv7l/wheel/liftofftools/variants
2022-08-02T14:46:58,728   copying build/lib/liftofftools/variants/variants.py -> build/bdist.linux-armv7l/wheel/liftofftools/variants
2022-08-02T14:46:58,732   copying build/lib/liftofftools/variants/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/variants
2022-08-02T14:46:58,736   copying build/lib/liftofftools/annotation.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-08-02T14:46:58,740   copying build/lib/liftofftools/alignment.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-08-02T14:46:58,744   copying build/lib/liftofftools/sequences.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-08-02T14:46:58,748   copying build/lib/liftofftools/subprocesses.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-08-02T14:46:58,751   copying build/lib/liftofftools/filepaths.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-08-02T14:46:58,755   copying build/lib/liftofftools/build_database.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-08-02T14:46:58,759   copying build/lib/liftofftools/cli_arguments.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-08-02T14:46:58,763   copying build/lib/liftofftools/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools
2022-08-02T14:46:58,767   creating build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-08-02T14:46:58,769   copying build/lib/liftofftools/synteny/plot_gene_order.py -> build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-08-02T14:46:58,774   copying build/lib/liftofftools/synteny/synteny.py -> build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-08-02T14:46:58,778   copying build/lib/liftofftools/synteny/__init__.py -> build/bdist.linux-armv7l/wheel/liftofftools/synteny
2022-08-02T14:46:58,781   running install_egg_info
2022-08-02T14:47:00,139   running egg_info
2022-08-02T14:47:00,807   writing LiftoffTools.egg-info/PKG-INFO
2022-08-02T14:47:01,392   writing dependency_links to LiftoffTools.egg-info/dependency_links.txt
2022-08-02T14:47:03,169   writing entry points to LiftoffTools.egg-info/entry_points.txt
2022-08-02T14:47:04,399   writing requirements to LiftoffTools.egg-info/requires.txt
2022-08-02T14:47:04,981   writing top-level names to LiftoffTools.egg-info/top_level.txt
2022-08-02T14:47:05,068   reading manifest file 'LiftoffTools.egg-info/SOURCES.txt'
2022-08-02T14:47:05,079   writing manifest file 'LiftoffTools.egg-info/SOURCES.txt'
2022-08-02T14:47:05,082   Copying LiftoffTools.egg-info to build/bdist.linux-armv7l/wheel/LiftoffTools-0.4.3-py3.7.egg-info
2022-08-02T14:47:05,106   running install_scripts
2022-08-02T14:47:05,271   creating build/bdist.linux-armv7l/wheel/LiftoffTools-0.4.3.dist-info/WHEEL
2022-08-02T14:47:05,276   creating '/tmp/pip-wheel-p7y1m03w/LiftoffTools-0.4.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-08-02T14:47:05,283   adding 'liftofftools/__init__.py'
2022-08-02T14:47:05,286   adding 'liftofftools/alignment.py'
2022-08-02T14:47:05,289   adding 'liftofftools/annotation.py'
2022-08-02T14:47:05,292   adding 'liftofftools/build_database.py'
2022-08-02T14:47:05,294   adding 'liftofftools/cli_arguments.py'
2022-08-02T14:47:05,297   adding 'liftofftools/filepaths.py'
2022-08-02T14:47:05,300   adding 'liftofftools/liftofftools.py'
2022-08-02T14:47:05,302   adding 'liftofftools/sequences.py'
2022-08-02T14:47:05,304   adding 'liftofftools/subprocesses.py'
2022-08-02T14:47:05,307   adding 'liftofftools/cluster_analysis/__init__.py'
2022-08-02T14:47:05,310   adding 'liftofftools/cluster_analysis/analyze_clusters.py'
2022-08-02T14:47:05,313   adding 'liftofftools/cluster_analysis/clusters.py'
2022-08-02T14:47:05,316   adding 'liftofftools/cluster_analysis/mmseqs_workflow.py'
2022-08-02T14:47:05,319   adding 'liftofftools/synteny/__init__.py'
2022-08-02T14:47:05,322   adding 'liftofftools/synteny/plot_gene_order.py'
2022-08-02T14:47:05,325   adding 'liftofftools/synteny/synteny.py'
2022-08-02T14:47:05,330   adding 'liftofftools/tests/__init__.py'
2022-08-02T14:47:05,545   adding 'liftofftools/tests/test_all.py'
2022-08-02T14:47:05,548   adding 'liftofftools/variants/__init__.py'
2022-08-02T14:47:05,551   adding 'liftofftools/variants/variants.py'
2022-08-02T14:47:05,553   adding 'LiftoffTools-0.4.3.dist-info/METADATA'
2022-08-02T14:47:05,555   adding 'LiftoffTools-0.4.3.dist-info/WHEEL'
2022-08-02T14:47:05,556   adding 'LiftoffTools-0.4.3.dist-info/entry_points.txt'
2022-08-02T14:47:05,558   adding 'LiftoffTools-0.4.3.dist-info/top_level.txt'
2022-08-02T14:47:05,560   adding 'LiftoffTools-0.4.3.dist-info/RECORD'
2022-08-02T14:47:05,563   removing build/bdist.linux-armv7l/wheel
2022-08-02T14:47:05,816   Building wheel for liftofftools (setup.py): finished with status 'done'
2022-08-02T14:47:05,823   Created wheel for liftofftools: filename=LiftoffTools-0.4.3-py3-none-any.whl size=19150 sha256=ca0100e0c5e1a4279136e1da180be1da0fd6cb1a9a7f75dc768d14f335a7e26a
2022-08-02T14:47:05,826   Stored in directory: /tmp/pip-ephem-wheel-cache-ujngai3r/wheels/46/4c/d2/20fa4883855a0bfe47be5c388c660fab563ba1ff1343df7251
2022-08-02T14:47:05,852 Successfully built liftofftools
2022-08-02T14:47:05,861 Removed build tracker: '/tmp/pip-build-tracker-2olp225k'