2022-08-02T22:23:24,097 Created temporary directory: /tmp/pip-ephem-wheel-cache-hp4ks__k 2022-08-02T22:23:24,102 Created temporary directory: /tmp/pip-build-tracker-b7rrujgr 2022-08-02T22:23:24,103 Initialized build tracking at /tmp/pip-build-tracker-b7rrujgr 2022-08-02T22:23:24,103 Created build tracker: /tmp/pip-build-tracker-b7rrujgr 2022-08-02T22:23:24,104 Entered build tracker: /tmp/pip-build-tracker-b7rrujgr 2022-08-02T22:23:24,105 Created temporary directory: /tmp/pip-wheel-rbctd1uw 2022-08-02T22:23:24,181 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-02T22:23:24,189 2 location(s) to search for versions of structuregraph-helpers: 2022-08-02T22:23:24,189 * https://pypi.org/simple/structuregraph-helpers/ 2022-08-02T22:23:24,189 * https://www.piwheels.org/simple/structuregraph-helpers/ 2022-08-02T22:23:24,191 Fetching project page and analyzing links: https://pypi.org/simple/structuregraph-helpers/ 2022-08-02T22:23:24,192 Getting page https://pypi.org/simple/structuregraph-helpers/ 2022-08-02T22:23:24,195 Found index url https://pypi.org/simple 2022-08-02T22:23:24,319 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/01/c0/ef7f514effe7fca5576abc753abd6336340dfa9ee534a9521c7e6c42829d/structuregraph_helpers-0.0.1-py3-none-any.whl#sha256=5534a4d78540e21f58d31ec5b52cee8e38c836217c087910c8eaab47541dfc8b (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T22:23:24,320 Found link https://files.pythonhosted.org/packages/19/a6/efc4f35cda870ce9eb691a1c84fa019da6d83f2f46e659620968493dc15a/structuregraph_helpers-0.0.1.tar.gz#sha256=4ecf9d1f686686ccc0d90373dd1159c3a5fca8e8fb4a941da8cca9119d481742 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.1 2022-08-02T22:23:24,321 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/2b/27/08d4cbfb51990845488cc126c7d2b1fcc1669afc7a544eba4b1299da8c3c/structuregraph_helpers-0.0.2-py3-none-any.whl#sha256=fd3007fea665b053e3cf0a8d899844d13473c58956df03932f675158fd2e8ff6 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T22:23:24,322 Found link https://files.pythonhosted.org/packages/6d/e7/a1c928f29f3b8946a670e480e4367cd3b7fe226565e6d68508754cf7a4ca/structuregraph_helpers-0.0.2.tar.gz#sha256=6e19f28faf763044e8bf13b8cb2984dfcc20122bdd337d6fd4071521b0b0bb25 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.2 2022-08-02T22:23:24,323 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/08/8f/3992b64303a0b684282c217ad32c9f5dea17ef8a9c3d9ae86b2ac2065590/structuregraph_helpers-0.0.3-py3-none-any.whl#sha256=fb376a72410a74c3bdb29d15367c822fb285e38ae1c61ab4763d712582a4c138 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T22:23:24,325 Found link https://files.pythonhosted.org/packages/9b/52/93f84e96204724f84c9bd1fd2b17a74e33da267ec9071c329d1470cf1a61/structuregraph_helpers-0.0.3.tar.gz#sha256=dd9e996a1872c6c494fe527faf38cbb3630b01c5efeccacbb49f27443119b08a (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.3 2022-08-02T22:23:24,325 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/79/ca/8bee7a6c5ddb8e07134ef0bd5c58f42126567b6249a659c365aeeed47dfe/structuregraph_helpers-0.0.4-py3-none-any.whl#sha256=464a767857c10c2629dfb8f818e580c2a7164a55b540e08b12697f4441e85514 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T22:23:24,327 Found link https://files.pythonhosted.org/packages/c9/92/22d06cb7b4f5db2e5d82bb9f83fcdb8a9240ead77b6a1b67aea1c1b31b3f/structuregraph_helpers-0.0.4.tar.gz#sha256=8b21a4cf58de1920715ee4ffaf2933ac0a808b7a495382ec9e7020a82b7b74f6 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.4 2022-08-02T22:23:24,327 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/10/f4/6161d3b18c7b1d45bf77feaebd04e13b71037e456b3bb7f8dfaa22cbd615/structuregraph_helpers-0.0.5-py3-none-any.whl#sha256=bdeb9df129b79d2d5365a514a4dfc3886fad1dfcb7ead7d15606f20d4503baf8 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T22:23:24,329 Found link https://files.pythonhosted.org/packages/f9/23/f971acfac7f00b63230f00a8da56c7d1c2e971037e3d18722df1bec66990/structuregraph_helpers-0.0.5.tar.gz#sha256=3f0613cf2014b28f514d6910f1f98a6d9b9fb20179074ca7b56df52a7ea69d34 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.5 2022-08-02T22:23:24,329 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/e1/6e/45323d2e6f23eecabc687e121462ccabb9a0a9c2c8a54791accae01ca785/structuregraph_helpers-0.0.6-py3-none-any.whl#sha256=c3d3956c70138e1f468cfc0af6ca0360bc4748b108d793827e7e081fe5d1e007 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T22:23:24,331 Found link https://files.pythonhosted.org/packages/f9/97/5db1d476190262fe28cb639c441ae76cbd224f8cd9e0fb23901e215f2494/structuregraph_helpers-0.0.6.tar.gz#sha256=11f2973443130b436a53791c9dc4c9b9458a6c83b61ae9b2e2045dd091d884a7 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.6 2022-08-02T22:23:24,331 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/b4/06/e3aa5722724ab9642722a2e2655649aeee5442e0b767ecf210f2962d082b/structuregraph_helpers-0.0.7-py3-none-any.whl#sha256=2793897752a6a148b30717505a46f3fc9b9003e31d01b52a77c3117769156d28 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T22:23:24,333 Found link https://files.pythonhosted.org/packages/6f/92/1ec985339c0891473460f0048e1968c1cc91f958f273d2f0b6a979c6178c/structuregraph_helpers-0.0.7.tar.gz#sha256=70fd38b354d463a7b68e9db63f8c0327a58ae8a0440b7b2bc52e45a7adb2c0be (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.7 2022-08-02T22:23:24,334 Fetching project page and analyzing links: https://www.piwheels.org/simple/structuregraph-helpers/ 2022-08-02T22:23:24,334 Getting page https://www.piwheels.org/simple/structuregraph-helpers/ 2022-08-02T22:23:24,336 Found index url https://www.piwheels.org/simple 2022-08-02T22:23:24,560 Skipping link: No binaries permitted for structuregraph-helpers: https://www.piwheels.org/simple/structuregraph-helpers/structuregraph_helpers-0.0.6-py3-none-any.whl#sha256=af38198289fa75bf9cdb538cb5c764f457869c0c95b368d6cd6f09b2271c3084 (from https://www.piwheels.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T22:23:24,561 Skipping link: No binaries permitted for structuregraph-helpers: https://www.piwheels.org/simple/structuregraph-helpers/structuregraph_helpers-0.0.5-py3-none-any.whl#sha256=5ce5669d24ba789399370f56c9e79d952d2cb259965d88bfea56ef1ce60962f6 (from https://www.piwheels.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T22:23:24,561 Skipping link: No binaries permitted for structuregraph-helpers: https://www.piwheels.org/simple/structuregraph-helpers/structuregraph_helpers-0.0.4-py3-none-any.whl#sha256=aac66180026a322c4934b020cadfe2d70f58f63fee20de28af218e1dc3be1118 (from https://www.piwheels.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T22:23:24,562 Skipping link: No binaries permitted for structuregraph-helpers: https://www.piwheels.org/simple/structuregraph-helpers/structuregraph_helpers-0.0.3-py3-none-any.whl#sha256=52128c96011a76af29b07b1dcd3a8ccdec17b45d75b9612453fc63e7b679c6ed (from https://www.piwheels.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T22:23:24,562 Skipping link: No binaries permitted for structuregraph-helpers: https://www.piwheels.org/simple/structuregraph-helpers/structuregraph_helpers-0.0.2-py3-none-any.whl#sha256=5f3d4a20eb1f96524faab0fc32f6fdd8b35219a86fed7a35eaebcb9c53b381d8 (from https://www.piwheels.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T22:23:24,563 Skipping link: No binaries permitted for structuregraph-helpers: https://www.piwheels.org/simple/structuregraph-helpers/structuregraph_helpers-0.0.1-py3-none-any.whl#sha256=1c71e483a87e57887da2b6d2743b669d8f5fbeef78aac71164eb26ba7c7e22f2 (from https://www.piwheels.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-02T22:23:24,563 Skipping link: not a file: https://www.piwheels.org/simple/structuregraph-helpers/ 2022-08-02T22:23:24,564 Skipping link: not a file: https://pypi.org/simple/structuregraph-helpers/ 2022-08-02T22:23:24,611 Given no hashes to check 1 links for project 'structuregraph-helpers': discarding no candidates 2022-08-02T22:23:24,653 Collecting structuregraph-helpers==0.0.7 2022-08-02T22:23:24,657 Created temporary directory: /tmp/pip-unpack-s56gxr67 2022-08-02T22:23:25,042 Downloading structuregraph_helpers-0.0.7.tar.gz (94 kB) 2022-08-02T22:23:25,387 Added structuregraph-helpers==0.0.7 from https://files.pythonhosted.org/packages/6f/92/1ec985339c0891473460f0048e1968c1cc91f958f273d2f0b6a979c6178c/structuregraph_helpers-0.0.7.tar.gz#sha256=70fd38b354d463a7b68e9db63f8c0327a58ae8a0440b7b2bc52e45a7adb2c0be to build tracker '/tmp/pip-build-tracker-b7rrujgr' 2022-08-02T22:23:25,395 Created temporary directory: /tmp/pip-build-env-4z0slryo 2022-08-02T22:23:25,416 Created temporary directory: /tmp/pip-standalone-pip-uen01wa5 2022-08-02T22:23:27,779 Installing build dependencies: started 2022-08-02T22:23:27,781 Running command pip subprocess to install build dependencies 2022-08-02T22:23:39,007 Using pip 22.1.2 from /tmp/pip-standalone-pip-uen01wa5/__env_pip__.zip/pip (python 3.9) 2022-08-02T22:23:40,655 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-02T22:23:44,736 Collecting setuptools>=35.0.2 2022-08-02T22:23:45,017 Using cached https://www.piwheels.org/simple/setuptools/setuptools-63.3.0-py3-none-any.whl (1.2 MB) 2022-08-02T22:23:52,348 Installing collected packages: setuptools 2022-08-02T22:23:57,711 Successfully installed setuptools-63.3.0 2022-08-02T22:23:57,911 --- Logging error --- 2022-08-02T22:23:57,928 Traceback (most recent call last): 2022-08-02T22:23:57,928 File "/tmp/pip-standalone-pip-uen01wa5/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-08-02T22:23:57,928 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-08-02T22:23:57,929 File "/tmp/pip-standalone-pip-uen01wa5/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-08-02T22:23:57,929 extend(render(renderable, render_options)) 2022-08-02T22:23:57,930 File "/tmp/pip-standalone-pip-uen01wa5/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-08-02T22:23:57,930 for render_output in iter_render: 2022-08-02T22:23:57,930 File "/tmp/pip-standalone-pip-uen01wa5/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-08-02T22:23:57,931 for line in lines: 2022-08-02T22:23:57,931 File "/tmp/pip-standalone-pip-uen01wa5/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-08-02T22:23:57,931 for segment in segments: 2022-08-02T22:23:57,931 File "/tmp/pip-standalone-pip-uen01wa5/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-08-02T22:23:57,932 renderable = rich_cast(renderable) 2022-08-02T22:23:57,932 File "/tmp/pip-standalone-pip-uen01wa5/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-08-02T22:23:57,932 renderable = cast_method() 2022-08-02T22:23:57,933 File "/tmp/pip-standalone-pip-uen01wa5/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-08-02T22:23:57,933 pip_cmd = get_best_invocation_for_this_pip() 2022-08-02T22:23:57,934 File "/tmp/pip-standalone-pip-uen01wa5/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip 2022-08-02T22:23:57,934 if found_executable and os.path.samefile( 2022-08-02T22:23:57,934 File "/usr/lib/python3.9/genericpath.py", line 101, in samefile 2022-08-02T22:23:57,935 s2 = os.stat(f2) 2022-08-02T22:23:57,935 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9' 2022-08-02T22:23:57,935 Call stack: 2022-08-02T22:23:57,939 File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main 2022-08-02T22:23:57,939 return _run_code(code, main_globals, None, 2022-08-02T22:23:57,939 File "/usr/lib/python3.9/runpy.py", line 87, in _run_code 2022-08-02T22:23:57,940 exec(code, run_globals) 2022-08-02T22:23:57,940 File "/tmp/pip-standalone-pip-uen01wa5/__env_pip__.zip/pip/__main__.py", line 31, in 2022-08-02T22:23:57,940 sys.exit(_main()) 2022-08-02T22:23:57,941 File "/tmp/pip-standalone-pip-uen01wa5/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-08-02T22:23:57,941 return command.main(cmd_args) 2022-08-02T22:23:57,941 File "/tmp/pip-standalone-pip-uen01wa5/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-08-02T22:23:57,942 return self._main(args) 2022-08-02T22:23:57,942 File "/tmp/pip-standalone-pip-uen01wa5/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-08-02T22:23:57,942 self.handle_pip_version_check(options) 2022-08-02T22:23:57,942 File "/tmp/pip-standalone-pip-uen01wa5/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-08-02T22:23:57,943 pip_self_version_check(session, options) 2022-08-02T22:23:57,943 File "/tmp/pip-standalone-pip-uen01wa5/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-08-02T22:23:57,943 logger.info("[present-rich] %s", upgrade_prompt) 2022-08-02T22:23:57,944 File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info 2022-08-02T22:23:57,944 self._log(INFO, msg, args, **kwargs) 2022-08-02T22:23:57,945 File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log 2022-08-02T22:23:57,945 self.handle(record) 2022-08-02T22:23:57,945 File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle 2022-08-02T22:23:57,945 self.callHandlers(record) 2022-08-02T22:23:57,946 File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers 2022-08-02T22:23:57,946 hdlr.handle(record) 2022-08-02T22:23:57,946 File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle 2022-08-02T22:23:57,947 self.emit(record) 2022-08-02T22:23:57,947 File "/tmp/pip-standalone-pip-uen01wa5/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-08-02T22:23:57,947 self.handleError(record) 2022-08-02T22:23:57,947 Message: '[present-rich] %s' 2022-08-02T22:23:57,948 Arguments: (UpgradePrompt(old='22.1.2', new='22.2'),) 2022-08-02T22:23:58,460 Installing build dependencies: finished with status 'done' 2022-08-02T22:23:58,488 Getting requirements to build wheel: started 2022-08-02T22:23:58,490 Running command Getting requirements to build wheel 2022-08-02T22:24:00,506 /usr/local/lib/python3.9/dist-packages/setuptools/config/setupcfg.py:459: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-08-02T22:24:00,508 warnings.warn(msg, warning_class) 2022-08-02T22:24:03,220 running egg_info 2022-08-02T22:24:03,813 writing src/structuregraph_helpers.egg-info/PKG-INFO 2022-08-02T22:24:04,382 writing dependency_links to src/structuregraph_helpers.egg-info/dependency_links.txt 2022-08-02T22:24:06,063 writing entry points to src/structuregraph_helpers.egg-info/entry_points.txt 2022-08-02T22:24:07,185 writing requirements to src/structuregraph_helpers.egg-info/requires.txt 2022-08-02T22:24:07,748 writing top-level names to src/structuregraph_helpers.egg-info/top_level.txt 2022-08-02T22:24:08,420 reading manifest file 'src/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-02T22:24:08,436 reading manifest template 'MANIFEST.in' 2022-08-02T22:24:08,448 no previously-included directories found matching 'scripts' 2022-08-02T22:24:08,449 no previously-included directories found matching 'notebooks' 2022-08-02T22:24:08,465 warning: no files found matching '*.png' under directory 'docs/source' 2022-08-02T22:24:08,467 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2022-08-02T22:24:08,468 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2022-08-02T22:24:08,470 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-08-02T22:24:08,471 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2022-08-02T22:24:08,472 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2022-08-02T22:24:08,474 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2022-08-02T22:24:08,476 warning: no previously-included files found matching 'tox.ini' 2022-08-02T22:24:08,476 warning: no previously-included files found matching '.flake8' 2022-08-02T22:24:08,477 warning: no previously-included files found matching '.bumpversion.cfg' 2022-08-02T22:24:08,478 warning: no previously-included files found matching '.readthedocs.yml' 2022-08-02T22:24:08,479 warning: no previously-included files found matching 'CONTRIBUTING.rst' 2022-08-02T22:24:08,480 adding license file 'LICENSE' 2022-08-02T22:24:08,489 writing manifest file 'src/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-02T22:24:08,695 Getting requirements to build wheel: finished with status 'done' 2022-08-02T22:24:08,721 Created temporary directory: /tmp/pip-standalone-pip-yxjjgvwg 2022-08-02T22:24:10,910 Installing backend dependencies: started 2022-08-02T22:24:10,912 Running command pip subprocess to install backend dependencies 2022-08-02T22:24:22,095 Using pip 22.1.2 from /tmp/pip-standalone-pip-yxjjgvwg/__env_pip__.zip/pip (python 3.9) 2022-08-02T22:24:23,773 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-02T22:24:24,662 Collecting wheel 2022-08-02T22:24:24,697 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-08-02T22:24:31,379 Installing collected packages: wheel 2022-08-02T22:24:31,674 Creating /tmp/pip-build-env-4z0slryo/normal/bin 2022-08-02T22:24:31,679 changing mode of /tmp/pip-build-env-4z0slryo/normal/bin/wheel to 755 2022-08-02T22:24:31,706 Successfully installed wheel-0.37.1 2022-08-02T22:24:31,905 --- Logging error --- 2022-08-02T22:24:31,920 Traceback (most recent call last): 2022-08-02T22:24:31,921 File "/tmp/pip-standalone-pip-yxjjgvwg/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-08-02T22:24:31,921 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-08-02T22:24:31,921 File "/tmp/pip-standalone-pip-yxjjgvwg/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-08-02T22:24:31,922 extend(render(renderable, render_options)) 2022-08-02T22:24:31,922 File "/tmp/pip-standalone-pip-yxjjgvwg/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-08-02T22:24:31,922 for render_output in iter_render: 2022-08-02T22:24:31,923 File "/tmp/pip-standalone-pip-yxjjgvwg/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-08-02T22:24:31,923 for line in lines: 2022-08-02T22:24:31,923 File "/tmp/pip-standalone-pip-yxjjgvwg/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-08-02T22:24:31,924 for segment in segments: 2022-08-02T22:24:31,924 File "/tmp/pip-standalone-pip-yxjjgvwg/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-08-02T22:24:31,924 renderable = rich_cast(renderable) 2022-08-02T22:24:31,925 File "/tmp/pip-standalone-pip-yxjjgvwg/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-08-02T22:24:31,925 renderable = cast_method() 2022-08-02T22:24:31,925 File "/tmp/pip-standalone-pip-yxjjgvwg/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-08-02T22:24:31,925 pip_cmd = get_best_invocation_for_this_pip() 2022-08-02T22:24:31,926 File "/tmp/pip-standalone-pip-yxjjgvwg/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip 2022-08-02T22:24:31,926 if found_executable and os.path.samefile( 2022-08-02T22:24:31,926 File "/usr/lib/python3.9/genericpath.py", line 101, in samefile 2022-08-02T22:24:31,927 s2 = os.stat(f2) 2022-08-02T22:24:31,927 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9' 2022-08-02T22:24:31,927 Call stack: 2022-08-02T22:24:31,932 File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main 2022-08-02T22:24:31,932 return _run_code(code, main_globals, None, 2022-08-02T22:24:31,932 File "/usr/lib/python3.9/runpy.py", line 87, in _run_code 2022-08-02T22:24:31,933 exec(code, run_globals) 2022-08-02T22:24:31,933 File "/tmp/pip-standalone-pip-yxjjgvwg/__env_pip__.zip/pip/__main__.py", line 31, in 2022-08-02T22:24:31,933 sys.exit(_main()) 2022-08-02T22:24:31,934 File "/tmp/pip-standalone-pip-yxjjgvwg/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-08-02T22:24:31,934 return command.main(cmd_args) 2022-08-02T22:24:31,934 File "/tmp/pip-standalone-pip-yxjjgvwg/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-08-02T22:24:31,935 return self._main(args) 2022-08-02T22:24:31,935 File "/tmp/pip-standalone-pip-yxjjgvwg/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-08-02T22:24:31,935 self.handle_pip_version_check(options) 2022-08-02T22:24:31,935 File "/tmp/pip-standalone-pip-yxjjgvwg/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-08-02T22:24:31,936 pip_self_version_check(session, options) 2022-08-02T22:24:31,936 File "/tmp/pip-standalone-pip-yxjjgvwg/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-08-02T22:24:31,936 logger.info("[present-rich] %s", upgrade_prompt) 2022-08-02T22:24:31,937 File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info 2022-08-02T22:24:31,937 self._log(INFO, msg, args, **kwargs) 2022-08-02T22:24:31,937 File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log 2022-08-02T22:24:31,937 self.handle(record) 2022-08-02T22:24:31,938 File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle 2022-08-02T22:24:31,938 self.callHandlers(record) 2022-08-02T22:24:31,938 File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers 2022-08-02T22:24:31,939 hdlr.handle(record) 2022-08-02T22:24:31,939 File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle 2022-08-02T22:24:31,939 self.emit(record) 2022-08-02T22:24:31,939 File "/tmp/pip-standalone-pip-yxjjgvwg/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-08-02T22:24:31,940 self.handleError(record) 2022-08-02T22:24:31,940 Message: '[present-rich] %s' 2022-08-02T22:24:31,940 Arguments: (UpgradePrompt(old='22.1.2', new='22.2'),) 2022-08-02T22:24:32,386 Installing backend dependencies: finished with status 'done' 2022-08-02T22:24:32,407 Created temporary directory: /tmp/pip-modern-metadata-8ovr9krz 2022-08-02T22:24:32,414 Preparing metadata (pyproject.toml): started 2022-08-02T22:24:32,416 Running command Preparing metadata (pyproject.toml) 2022-08-02T22:24:36,144 /usr/local/lib/python3.9/dist-packages/setuptools/config/setupcfg.py:459: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-08-02T22:24:36,145 warnings.warn(msg, warning_class) 2022-08-02T22:24:36,812 running dist_info 2022-08-02T22:24:37,429 creating /tmp/pip-modern-metadata-8ovr9krz/structuregraph_helpers.egg-info 2022-08-02T22:24:38,024 writing /tmp/pip-modern-metadata-8ovr9krz/structuregraph_helpers.egg-info/PKG-INFO 2022-08-02T22:24:38,583 writing dependency_links to /tmp/pip-modern-metadata-8ovr9krz/structuregraph_helpers.egg-info/dependency_links.txt 2022-08-02T22:24:40,270 writing entry points to /tmp/pip-modern-metadata-8ovr9krz/structuregraph_helpers.egg-info/entry_points.txt 2022-08-02T22:24:41,392 writing requirements to /tmp/pip-modern-metadata-8ovr9krz/structuregraph_helpers.egg-info/requires.txt 2022-08-02T22:24:41,948 writing top-level names to /tmp/pip-modern-metadata-8ovr9krz/structuregraph_helpers.egg-info/top_level.txt 2022-08-02T22:24:41,950 writing manifest file '/tmp/pip-modern-metadata-8ovr9krz/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-02T22:24:42,626 reading manifest file '/tmp/pip-modern-metadata-8ovr9krz/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-02T22:24:42,629 reading manifest template 'MANIFEST.in' 2022-08-02T22:24:42,645 no previously-included directories found matching 'scripts' 2022-08-02T22:24:42,646 no previously-included directories found matching 'notebooks' 2022-08-02T22:24:42,661 warning: no files found matching '*.png' under directory 'docs/source' 2022-08-02T22:24:42,662 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2022-08-02T22:24:42,663 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2022-08-02T22:24:42,665 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-08-02T22:24:42,666 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2022-08-02T22:24:42,667 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2022-08-02T22:24:42,668 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2022-08-02T22:24:42,670 warning: no previously-included files found matching 'tox.ini' 2022-08-02T22:24:42,671 warning: no previously-included files found matching '.flake8' 2022-08-02T22:24:42,672 warning: no previously-included files found matching '.bumpversion.cfg' 2022-08-02T22:24:42,673 warning: no previously-included files found matching '.readthedocs.yml' 2022-08-02T22:24:42,674 warning: no previously-included files found matching 'CONTRIBUTING.rst' 2022-08-02T22:24:42,674 adding license file 'LICENSE' 2022-08-02T22:24:42,682 writing manifest file '/tmp/pip-modern-metadata-8ovr9krz/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-02T22:24:42,685 creating '/tmp/pip-modern-metadata-8ovr9krz/structuregraph_helpers-0.0.7.dist-info' 2022-08-02T22:24:43,168 Preparing metadata (pyproject.toml): finished with status 'done' 2022-08-02T22:24:43,185 Source in /tmp/pip-wheel-rbctd1uw/structuregraph-helpers_aa8f65f350564810b62a914735d9976e has version 0.0.7, which satisfies requirement structuregraph-helpers==0.0.7 from https://files.pythonhosted.org/packages/6f/92/1ec985339c0891473460f0048e1968c1cc91f958f273d2f0b6a979c6178c/structuregraph_helpers-0.0.7.tar.gz#sha256=70fd38b354d463a7b68e9db63f8c0327a58ae8a0440b7b2bc52e45a7adb2c0be 2022-08-02T22:24:43,188 Removed structuregraph-helpers==0.0.7 from https://files.pythonhosted.org/packages/6f/92/1ec985339c0891473460f0048e1968c1cc91f958f273d2f0b6a979c6178c/structuregraph_helpers-0.0.7.tar.gz#sha256=70fd38b354d463a7b68e9db63f8c0327a58ae8a0440b7b2bc52e45a7adb2c0be from build tracker '/tmp/pip-build-tracker-b7rrujgr' 2022-08-02T22:24:43,203 Created temporary directory: /tmp/pip-unpack-zf926k1y 2022-08-02T22:24:43,204 Building wheels for collected packages: structuregraph-helpers 2022-08-02T22:24:43,213 Created temporary directory: /tmp/pip-wheel-i73vcvb_ 2022-08-02T22:24:43,214 Destination directory: /tmp/pip-wheel-i73vcvb_ 2022-08-02T22:24:43,219 Building wheel for structuregraph-helpers (pyproject.toml): started 2022-08-02T22:24:43,221 Running command Building wheel for structuregraph-helpers (pyproject.toml) 2022-08-02T22:24:46,985 /usr/local/lib/python3.9/dist-packages/setuptools/config/setupcfg.py:459: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-08-02T22:24:46,986 warnings.warn(msg, warning_class) 2022-08-02T22:24:47,193 running bdist_wheel 2022-08-02T22:24:48,367 running build 2022-08-02T22:24:48,367 running build_py 2022-08-02T22:24:48,978 creating build 2022-08-02T22:24:48,979 creating build/lib 2022-08-02T22:24:48,980 creating build/lib/structuregraph_helpers 2022-08-02T22:24:48,983 copying src/structuregraph_helpers/plotting.py -> build/lib/structuregraph_helpers 2022-08-02T22:24:48,986 copying src/structuregraph_helpers/delete.py -> build/lib/structuregraph_helpers 2022-08-02T22:24:48,990 copying src/structuregraph_helpers/cli.py -> build/lib/structuregraph_helpers 2022-08-02T22:24:48,994 copying src/structuregraph_helpers/_hasher.py -> build/lib/structuregraph_helpers 2022-08-02T22:24:48,998 copying src/structuregraph_helpers/utils.py -> build/lib/structuregraph_helpers 2022-08-02T22:24:49,001 copying src/structuregraph_helpers/version.py -> build/lib/structuregraph_helpers 2022-08-02T22:24:49,005 copying src/structuregraph_helpers/create.py -> build/lib/structuregraph_helpers 2022-08-02T22:24:49,008 copying src/structuregraph_helpers/subgraph.py -> build/lib/structuregraph_helpers 2022-08-02T22:24:49,012 copying src/structuregraph_helpers/__init__.py -> build/lib/structuregraph_helpers 2022-08-02T22:24:49,016 copying src/structuregraph_helpers/hash.py -> build/lib/structuregraph_helpers 2022-08-02T22:24:49,019 copying src/structuregraph_helpers/analysis.py -> build/lib/structuregraph_helpers 2022-08-02T22:24:49,022 running egg_info 2022-08-02T22:24:50,251 writing src/structuregraph_helpers.egg-info/PKG-INFO 2022-08-02T22:24:50,870 writing dependency_links to src/structuregraph_helpers.egg-info/dependency_links.txt 2022-08-02T22:24:52,580 writing entry points to src/structuregraph_helpers.egg-info/entry_points.txt 2022-08-02T22:24:53,726 writing requirements to src/structuregraph_helpers.egg-info/requires.txt 2022-08-02T22:24:54,301 writing top-level names to src/structuregraph_helpers.egg-info/top_level.txt 2022-08-02T22:24:54,342 reading manifest file 'src/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-02T22:24:54,349 reading manifest template 'MANIFEST.in' 2022-08-02T22:24:54,358 no previously-included directories found matching 'scripts' 2022-08-02T22:24:54,359 no previously-included directories found matching 'notebooks' 2022-08-02T22:24:54,373 warning: no files found matching '*.png' under directory 'docs/source' 2022-08-02T22:24:54,375 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2022-08-02T22:24:54,377 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2022-08-02T22:24:54,378 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-08-02T22:24:54,380 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2022-08-02T22:24:54,381 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2022-08-02T22:24:54,383 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2022-08-02T22:24:54,384 warning: no previously-included files found matching 'tox.ini' 2022-08-02T22:24:54,385 warning: no previously-included files found matching '.flake8' 2022-08-02T22:24:54,386 warning: no previously-included files found matching '.bumpversion.cfg' 2022-08-02T22:24:54,387 warning: no previously-included files found matching '.readthedocs.yml' 2022-08-02T22:24:54,388 warning: no previously-included files found matching 'CONTRIBUTING.rst' 2022-08-02T22:24:54,388 adding license file 'LICENSE' 2022-08-02T22:24:54,398 writing manifest file 'src/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-02T22:24:54,403 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-02T22:24:54,404 ############################ 2022-08-02T22:24:54,405 # Package would be ignored # 2022-08-02T22:24:54,405 ############################ 2022-08-02T22:24:54,405 Python recognizes 'structuregraph_helpers.data' as an importable package, however it is 2022-08-02T22:24:54,405 included in the distribution as "data". 2022-08-02T22:24:54,406 This behavior is likely to change in future versions of setuptools (and 2022-08-02T22:24:54,406 therefore is considered deprecated). 2022-08-02T22:24:54,407 Please make sure that 'structuregraph_helpers.data' is included as a package by using 2022-08-02T22:24:54,407 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-02T22:24:54,408 You can read more about "package discovery" and "data files" on setuptools 2022-08-02T22:24:54,408 documentation page. 2022-08-02T22:24:54,409 !! 2022-08-02T22:24:54,409 check.warn(importable) 2022-08-02T22:24:54,410 creating build/lib/structuregraph_helpers/data 2022-08-02T22:24:54,410 copying src/structuregraph_helpers/data/atom_typing_radii.yml -> build/lib/structuregraph_helpers/data 2022-08-02T22:24:54,418 copying src/structuregraph_helpers/data/li_radii.yml -> build/lib/structuregraph_helpers/data 2022-08-02T22:24:54,436 copying src/structuregraph_helpers/data/tuned_vesta.yml -> build/lib/structuregraph_helpers/data 2022-08-02T22:24:55,656 installing to build/bdist.linux-armv7l/wheel 2022-08-02T22:24:55,657 running install 2022-08-02T22:24:55,716 running install_lib 2022-08-02T22:24:56,321 creating build/bdist.linux-armv7l 2022-08-02T22:24:56,321 creating build/bdist.linux-armv7l/wheel 2022-08-02T22:24:56,325 creating build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T22:24:56,327 copying build/lib/structuregraph_helpers/plotting.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T22:24:56,331 copying build/lib/structuregraph_helpers/delete.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T22:24:56,335 copying build/lib/structuregraph_helpers/cli.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T22:24:56,338 copying build/lib/structuregraph_helpers/_hasher.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T22:24:56,343 copying build/lib/structuregraph_helpers/utils.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T22:24:56,347 copying build/lib/structuregraph_helpers/version.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T22:24:56,350 copying build/lib/structuregraph_helpers/create.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T22:24:56,355 copying build/lib/structuregraph_helpers/subgraph.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T22:24:56,360 creating build/bdist.linux-armv7l/wheel/structuregraph_helpers/data 2022-08-02T22:24:56,362 copying build/lib/structuregraph_helpers/data/tuned_vesta.yml -> build/bdist.linux-armv7l/wheel/structuregraph_helpers/data 2022-08-02T22:24:56,368 copying build/lib/structuregraph_helpers/data/li_radii.yml -> build/bdist.linux-armv7l/wheel/structuregraph_helpers/data 2022-08-02T22:24:56,383 copying build/lib/structuregraph_helpers/data/atom_typing_radii.yml -> build/bdist.linux-armv7l/wheel/structuregraph_helpers/data 2022-08-02T22:24:56,392 copying build/lib/structuregraph_helpers/__init__.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T22:24:56,395 copying build/lib/structuregraph_helpers/hash.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T22:24:56,400 copying build/lib/structuregraph_helpers/analysis.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-02T22:24:56,403 running install_egg_info 2022-08-02T22:24:57,016 Copying src/structuregraph_helpers.egg-info to build/bdist.linux-armv7l/wheel/structuregraph_helpers-0.0.7-py3.9.egg-info 2022-08-02T22:24:57,046 running install_scripts 2022-08-02T22:24:57,268 creating build/bdist.linux-armv7l/wheel/structuregraph_helpers-0.0.7.dist-info/WHEEL 2022-08-02T22:24:57,272 creating '/tmp/pip-wheel-i73vcvb_/tmp7i6yasxt/structuregraph_helpers-0.0.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-08-02T22:24:57,277 adding 'structuregraph_helpers/__init__.py' 2022-08-02T22:24:57,283 adding 'structuregraph_helpers/_hasher.py' 2022-08-02T22:24:57,286 adding 'structuregraph_helpers/analysis.py' 2022-08-02T22:24:57,288 adding 'structuregraph_helpers/cli.py' 2022-08-02T22:24:57,291 adding 'structuregraph_helpers/create.py' 2022-08-02T22:24:57,294 adding 'structuregraph_helpers/delete.py' 2022-08-02T22:24:57,297 adding 'structuregraph_helpers/hash.py' 2022-08-02T22:24:57,300 adding 'structuregraph_helpers/plotting.py' 2022-08-02T22:24:57,304 adding 'structuregraph_helpers/subgraph.py' 2022-08-02T22:24:57,306 adding 'structuregraph_helpers/utils.py' 2022-08-02T22:24:57,308 adding 'structuregraph_helpers/version.py' 2022-08-02T22:24:57,338 adding 'structuregraph_helpers/data/atom_typing_radii.yml' 2022-08-02T22:24:57,399 adding 'structuregraph_helpers/data/li_radii.yml' 2022-08-02T22:24:57,413 adding 'structuregraph_helpers/data/tuned_vesta.yml' 2022-08-02T22:24:57,418 adding 'structuregraph_helpers-0.0.7.dist-info/LICENSE' 2022-08-02T22:24:57,421 adding 'structuregraph_helpers-0.0.7.dist-info/METADATA' 2022-08-02T22:24:57,423 adding 'structuregraph_helpers-0.0.7.dist-info/WHEEL' 2022-08-02T22:24:57,425 adding 'structuregraph_helpers-0.0.7.dist-info/entry_points.txt' 2022-08-02T22:24:57,427 adding 'structuregraph_helpers-0.0.7.dist-info/top_level.txt' 2022-08-02T22:24:57,429 adding 'structuregraph_helpers-0.0.7.dist-info/RECORD' 2022-08-02T22:24:57,434 removing build/bdist.linux-armv7l/wheel 2022-08-02T22:24:57,702 Building wheel for structuregraph-helpers (pyproject.toml): finished with status 'done' 2022-08-02T22:24:57,719 Created wheel for structuregraph-helpers: filename=structuregraph_helpers-0.0.7-py3-none-any.whl size=71691 sha256=13561ece0c60a9689e9a44f6c879b93947f4a50374d5facaae4ed959adccd992 2022-08-02T22:24:57,721 Stored in directory: /tmp/pip-ephem-wheel-cache-hp4ks__k/wheels/16/e5/08/33d8ddc3308aa843b0ffec3388637baa3b2b5d73872da04be2 2022-08-02T22:24:57,748 Successfully built structuregraph-helpers 2022-08-02T22:24:57,761 Removed build tracker: '/tmp/pip-build-tracker-b7rrujgr'