2022-08-05T12:17:17,999 Created temporary directory: /tmp/pip-ephem-wheel-cache-0gz1e9dp
2022-08-05T12:17:18,005 Created temporary directory: /tmp/pip-build-tracker-i1ti4euv
2022-08-05T12:17:18,005 Initialized build tracking at /tmp/pip-build-tracker-i1ti4euv
2022-08-05T12:17:18,006 Created build tracker: /tmp/pip-build-tracker-i1ti4euv
2022-08-05T12:17:18,006 Entered build tracker: /tmp/pip-build-tracker-i1ti4euv
2022-08-05T12:17:18,007 Created temporary directory: /tmp/pip-wheel-is59i7do
2022-08-05T12:17:18,070 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-08-05T12:17:18,078 2 location(s) to search for versions of altocumulus:
2022-08-05T12:17:18,078 * https://pypi.org/simple/altocumulus/
2022-08-05T12:17:18,078 * https://www.piwheels.org/simple/altocumulus/
2022-08-05T12:17:18,080 Fetching project page and analyzing links: https://pypi.org/simple/altocumulus/
2022-08-05T12:17:18,081 Getting page https://pypi.org/simple/altocumulus/
2022-08-05T12:17:18,084 Found index url https://pypi.org/simple
2022-08-05T12:17:18,214   Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/09/5d/0b244b044b38f8ec9cfa845a3cba04c573a67d7ccf1c6a8c04baea364ec0/altocumulus-1.0.0-py3-none-any.whl#sha256=2de884a46f3f34f241e49bb5e0f50cdcdbd0bafa7b61d706d87820c51c447732 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3)
2022-08-05T12:17:18,215   Found link https://files.pythonhosted.org/packages/9b/52/23d85d485cf003959d038964e833c5780e57d9bee631d6e59929eff8a653/altocumulus-1.0.0.tar.gz#sha256=7d2fc66ae1beed14e86cc53bad4e3a42d2d51fa74abbeeb99dbf3ff648e91e74 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 1.0.0
2022-08-05T12:17:18,216   Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/ab/14/e585532cdd2355e8552f02661b96cbc6303cb14e5a8b2ed84b35c4b26c11/altocumulus-1.1.0-py3-none-any.whl#sha256=3d42d814adacda078456bfeef866aa672d6cccf7de5c0942530038f62d438625 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3)
2022-08-05T12:17:18,217   Found link https://files.pythonhosted.org/packages/cd/d3/a0f9430e9329c46e1116825e04b36595cbedea5e6ea4890e89ba916becf7/altocumulus-1.1.0.tar.gz#sha256=970f0a663f7c87999b686558c59330a4765e4377994696fc6abe1db09eb29035 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 1.1.0
2022-08-05T12:17:18,218   Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/5b/58/5cd013ad4d060074d66bdd12dd816040fac29abf103656c6f0f8f21f4101/altocumulus-1.1.1-py3-none-any.whl#sha256=70624d10ada9a6a32e52987a2d8a18e58cc4f90f9c93b6ec2461cf8ff26d6bdf (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3)
2022-08-05T12:17:18,219   Found link https://files.pythonhosted.org/packages/4d/f2/8eecb7a86aae1dc170c70db1f0fcdcd668871e0f13d54d544062e66c5c83/altocumulus-1.1.1.tar.gz#sha256=89bfde864f3a564b0275c8cfea136060d038eed729807e21fd3d4247883a118a (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 1.1.1
2022-08-05T12:17:18,220   Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/b0/2b/1114389da7745bbaa0cc5a9a64fb86ce44c16176cdd1e4b9f7a851014d74/altocumulus-2.0.0-py3-none-any.whl#sha256=b34e183a927cffd32471a8bc34426be59d4338a376211d7c2c5ead283ae5c66b (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3)
2022-08-05T12:17:18,221   Found link https://files.pythonhosted.org/packages/a6/83/bcd960f5d957669bb8c217d9c9996ecd3204ef87c138b570b81d403b4132/altocumulus-2.0.0.tar.gz#sha256=7b0af9eb5f2edbc7ca880207d6e3f6559c96c33fe7c7abaef9a517b9de3e04c0 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.0
2022-08-05T12:17:18,222   Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/ef/54/b9e37bb8875663ebb97aca019b6756912139181e60c0d9926ee91962750a/altocumulus-2.0.1-py3-none-any.whl#sha256=504dea5ef674559636981f1ac21ded3c592440f6afffbe5ec3b3eb7378709eb9 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3)
2022-08-05T12:17:18,223   Found link https://files.pythonhosted.org/packages/f7/46/dfa9702222dbc6c41f8876f53b705a2ccf5f56f9056fc441c972559dd97c/altocumulus-2.0.1.tar.gz#sha256=11e9776135462a2b82da731ff2880fd6db08f153f4b6cac71bf99fb15e80086e (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.1
2022-08-05T12:17:18,224   Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/16/a1/4e83b0a14b19dad7ad67102ff2452156d630f22a3db6193284dd6ff617b8/altocumulus-2.0.2-py3-none-any.whl#sha256=7713e1aafdbf82656442ce1f625af112f620e88a1ea7a133e4d2b7f29989ce47 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3)
2022-08-05T12:17:18,225   Found link https://files.pythonhosted.org/packages/15/96/a7ea3de17b028a343e7f98ffb5015584f32577496836dff06a75aac7a4d2/altocumulus-2.0.2.tar.gz#sha256=22f2d62d9722c04768af5d3ccba6260c28a647daa60cadbded3d578f8638a481 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.2
2022-08-05T12:17:18,226   Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/90/1d/6cf04dd28392b6564a9773346fee060b1a444cd547e1765cb00d8313623d/altocumulus-2.0.3rc1-py3-none-any.whl#sha256=50b09a4278331164b6c488632b59f49cf8dd6d28abf2fc400233257589e36b0d (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3)
2022-08-05T12:17:18,227   Found link https://files.pythonhosted.org/packages/4f/e3/63c77952a71504f703f817f5817c81b33beb69045e4c322972119f0feb0c/altocumulus-2.0.3rc1.tar.gz#sha256=9147996ae864daf4ae3e52757d867dd253e2800e1235a1140fe7fdc40d94da4d (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.3rc1
2022-08-05T12:17:18,228   Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/05/f3/a9bea6f2f7ee2c792be761a2d924a5fbfcc337c187a0f36efa13743cd91c/altocumulus-2.0.3rc2-py3-none-any.whl#sha256=594e2f499c9b0737c5214df4ec13a1ed993bbdc5802f9aa7683de0d3fc4d860a (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3)
2022-08-05T12:17:18,229   Found link https://files.pythonhosted.org/packages/79/86/d13df014d4aa35f67200217164c4c431d1882fc611cad36e36f192cd65da/altocumulus-2.0.3rc2.tar.gz#sha256=d17c4680a2206f67fab99881671b0db4e3ca9a24c7a10a9469efc5179940c688 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.3rc2
2022-08-05T12:17:18,230   Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/f7/0a/e8c65b16a72488df427e3e4a672b711fa37fe03864a37ea6f28154d62af2/altocumulus-2.0.3-py3-none-any.whl#sha256=88000e07b14f58c14c089fe90124affa866d75de1c677d26fed6f92d9860a37b (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3)
2022-08-05T12:17:18,231   Found link https://files.pythonhosted.org/packages/f1/a4/8967cf2efee181f840262d97502b50fec6daa3f64e006a7da71bd2b98f32/altocumulus-2.0.3.tar.gz#sha256=3adca8b76996dfa4c8ec5675f403c10d0276a28650a4198c8bc8998313595970 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.3
2022-08-05T12:17:18,232   Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/ef/37/74242489db637beeca530269f1f0998d3204a1ea94147b3dfb6ca1252492/altocumulus-2.1.0rc1-py3-none-any.whl#sha256=e1a80a2b85d28670243daa12d41cfe970fbb37f7a0fbedeffcdd9d948d2b125a (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8)
2022-08-05T12:17:18,233   Found link https://files.pythonhosted.org/packages/1f/ff/cf437127ab354e2214b985932fe4bfe53f88d22e24117486d7087f555aab/altocumulus-2.1.0rc1.tar.gz#sha256=d5b9f9d585fa6cbf004d63fb1a73447ef55a1ea6bf112d01d5f31c77f8829634 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8), version: 2.1.0rc1
2022-08-05T12:17:18,234   Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/42/1c/84d3abed1f49954500d8d3c1a4967bb77535ec2071e5c8ab678394dc5bad/altocumulus-2.1.0-py3-none-any.whl#sha256=77f8a90f688ed65299e995a91a7ead7a1dbbe62a59b178da1c48e6c769244b54 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8)
2022-08-05T12:17:18,235   Found link https://files.pythonhosted.org/packages/40/b8/ccbd0bc3dd767591f3a103b59467df99d2a04b1a29892a4d4573059dc71c/altocumulus-2.1.0.tar.gz#sha256=6d86d52e0d3ac4bf72c2d92ef8ede6bc25f6119352b6fdea25b0f271c4937196 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8), version: 2.1.0
2022-08-05T12:17:18,236 Fetching project page and analyzing links: https://www.piwheels.org/simple/altocumulus/
2022-08-05T12:17:18,236 Getting page https://www.piwheels.org/simple/altocumulus/
2022-08-05T12:17:18,239 Found index url https://www.piwheels.org/simple
2022-08-05T12:17:18,475   Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.1.0rc1-py3-none-any.whl#sha256=6b396221e83edf8ea948de5f08f9530d17a6fd7d69fa5cae8170d6706d775b2f (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3.8)
2022-08-05T12:17:18,475   Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.3-py3-none-any.whl#sha256=46f961cfb6d73de6a94b374526fd174bb2c74d158a42a80845c233d21fa30b44 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3)
2022-08-05T12:17:18,476   Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.3rc2-py3-none-any.whl#sha256=fd5ad8267f381ce8e009870ce1cab5e8c3380d6aa2f639e9a9d203f308eb24b2 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3)
2022-08-05T12:17:18,476   Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.3rc1-py3-none-any.whl#sha256=2974fbcb7d82548cd521b1303332af882651bbfbde6b61f44f5be4433f106f6d (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3)
2022-08-05T12:17:18,477   Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.2-py3-none-any.whl#sha256=9b84ef41234cb17b0f5191b223fc30fcda025c111e328390b7859982c4290d16 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3)
2022-08-05T12:17:18,477   Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.1-py3-none-any.whl#sha256=d57fb443288d95954c54ee58dd5acd0ddbf5a04f46f193014e8e0644c9987eb8 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3)
2022-08-05T12:17:18,478   Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.0-py3-none-any.whl#sha256=91ca330ce1605c7e3e28b071db20d5ba04a4efe913b11e3fb652a52a7cc2cdab (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3)
2022-08-05T12:17:18,478   Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-1.1.1-py3-none-any.whl#sha256=86749f39b1a75e769a544863a18b6fb10700c76da20ab7283556741adf596f8c (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3)
2022-08-05T12:17:18,479   Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-1.1.0-py3-none-any.whl#sha256=3d42d814adacda078456bfeef866aa672d6cccf7de5c0942530038f62d438625 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3)
2022-08-05T12:17:18,479   Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-1.0.0-py3-none-any.whl#sha256=2de884a46f3f34f241e49bb5e0f50cdcdbd0bafa7b61d706d87820c51c447732 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3)
2022-08-05T12:17:18,480 Skipping link: not a file: https://www.piwheels.org/simple/altocumulus/
2022-08-05T12:17:18,480 Skipping link: not a file: https://pypi.org/simple/altocumulus/
2022-08-05T12:17:18,529 Given no hashes to check 1 links for project 'altocumulus': discarding no candidates
2022-08-05T12:17:18,571 Collecting altocumulus==2.1.0
2022-08-05T12:17:18,575   Created temporary directory: /tmp/pip-unpack-m8ldyg1c
2022-08-05T12:17:18,667   Downloading altocumulus-2.1.0.tar.gz (34 kB)
2022-08-05T12:17:18,951   Added altocumulus==2.1.0 from https://files.pythonhosted.org/packages/40/b8/ccbd0bc3dd767591f3a103b59467df99d2a04b1a29892a4d4573059dc71c/altocumulus-2.1.0.tar.gz#sha256=6d86d52e0d3ac4bf72c2d92ef8ede6bc25f6119352b6fdea25b0f271c4937196 to build tracker '/tmp/pip-build-tracker-i1ti4euv'
2022-08-05T12:17:18,964   Created temporary directory: /tmp/pip-build-env-364hkszu
2022-08-05T12:17:18,985   Created temporary directory: /tmp/pip-standalone-pip-0qgzayrf
2022-08-05T12:17:21,353   Installing build dependencies: started
2022-08-05T12:17:21,355   Running command pip subprocess to install build dependencies
2022-08-05T12:17:32,686   Using pip 22.1.2 from /tmp/pip-standalone-pip-0qgzayrf/__env_pip__.zip/pip (python 3.9)
2022-08-05T12:17:34,707   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-08-05T12:17:38,671   Collecting setuptools>=42
2022-08-05T12:17:38,950     Using cached https://www.piwheels.org/simple/setuptools/setuptools-63.4.1-py3-none-any.whl (1.2 MB)
2022-08-05T12:17:39,619   Collecting wheel
2022-08-05T12:17:39,651     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-08-05T12:17:40,748   Collecting setuptools_scm[toml]>=3.4
2022-08-05T12:17:40,784     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.0.5-py3-none-any.whl (42 kB)
2022-08-05T12:17:41,303   Collecting packaging>=20.0
2022-08-05T12:17:41,336     Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB)
2022-08-05T12:17:41,580   Collecting typing-extensions
2022-08-05T12:17:41,615     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.3.0-py3-none-any.whl (25 kB)
2022-08-05T12:17:41,895   Collecting tomli>=1.0.0
2022-08-05T12:17:41,927     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2022-08-05T12:17:42,612   Collecting pyparsing!=3.0.5,>=2.0.2
2022-08-05T12:17:42,654     Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.9-py3-none-any.whl (98 kB)
2022-08-05T12:17:53,628   Installing collected packages: wheel, typing-extensions, tomli, setuptools, pyparsing, packaging, setuptools_scm
2022-08-05T12:17:53,928     Creating /tmp/pip-build-env-364hkszu/overlay/bin
2022-08-05T12:17:53,933     changing mode of /tmp/pip-build-env-364hkszu/overlay/bin/wheel to 755
2022-08-05T12:18:00,715   Successfully installed packaging-21.3 pyparsing-3.0.9 setuptools-63.4.1 setuptools_scm-7.0.5 tomli-2.0.1 typing-extensions-4.3.0 wheel-0.37.1
2022-08-05T12:18:00,932   --- Logging error ---
2022-08-05T12:18:00,948   Traceback (most recent call last):
2022-08-05T12:18:00,949     File "/tmp/pip-standalone-pip-0qgzayrf/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit
2022-08-05T12:18:00,949       self.console.print(renderable, overflow="ignore", crop=False, style=style)
2022-08-05T12:18:00,949     File "/tmp/pip-standalone-pip-0qgzayrf/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print
2022-08-05T12:18:00,950       extend(render(renderable, render_options))
2022-08-05T12:18:00,950     File "/tmp/pip-standalone-pip-0qgzayrf/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render
2022-08-05T12:18:00,951       for render_output in iter_render:
2022-08-05T12:18:00,951     File "/tmp/pip-standalone-pip-0qgzayrf/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__
2022-08-05T12:18:00,951       for line in lines:
2022-08-05T12:18:00,952     File "/tmp/pip-standalone-pip-0qgzayrf/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines
2022-08-05T12:18:00,952       for segment in segments:
2022-08-05T12:18:00,952     File "/tmp/pip-standalone-pip-0qgzayrf/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render
2022-08-05T12:18:00,952       renderable = rich_cast(renderable)
2022-08-05T12:18:00,953     File "/tmp/pip-standalone-pip-0qgzayrf/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast
2022-08-05T12:18:00,953       renderable = cast_method()
2022-08-05T12:18:00,954     File "/tmp/pip-standalone-pip-0qgzayrf/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__
2022-08-05T12:18:00,954       pip_cmd = get_best_invocation_for_this_pip()
2022-08-05T12:18:00,954     File "/tmp/pip-standalone-pip-0qgzayrf/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip
2022-08-05T12:18:00,955       if found_executable and os.path.samefile(
2022-08-05T12:18:00,955     File "/usr/lib/python3.9/genericpath.py", line 101, in samefile
2022-08-05T12:18:00,955       s2 = os.stat(f2)
2022-08-05T12:18:00,956   FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9'
2022-08-05T12:18:00,956   Call stack:
2022-08-05T12:18:00,959     File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main
2022-08-05T12:18:00,960       return _run_code(code, main_globals, None,
2022-08-05T12:18:00,960     File "/usr/lib/python3.9/runpy.py", line 87, in _run_code
2022-08-05T12:18:00,961       exec(code, run_globals)
2022-08-05T12:18:00,961     File "/tmp/pip-standalone-pip-0qgzayrf/__env_pip__.zip/pip/__main__.py", line 31, in <module>
2022-08-05T12:18:00,961       sys.exit(_main())
2022-08-05T12:18:00,961     File "/tmp/pip-standalone-pip-0qgzayrf/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main
2022-08-05T12:18:00,962       return command.main(cmd_args)
2022-08-05T12:18:00,962     File "/tmp/pip-standalone-pip-0qgzayrf/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main
2022-08-05T12:18:00,962       return self._main(args)
2022-08-05T12:18:00,963     File "/tmp/pip-standalone-pip-0qgzayrf/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main
2022-08-05T12:18:00,963       self.handle_pip_version_check(options)
2022-08-05T12:18:00,964     File "/tmp/pip-standalone-pip-0qgzayrf/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check
2022-08-05T12:18:00,964       pip_self_version_check(session, options)
2022-08-05T12:18:00,964     File "/tmp/pip-standalone-pip-0qgzayrf/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check
2022-08-05T12:18:00,965       logger.info("[present-rich] %s", upgrade_prompt)
2022-08-05T12:18:00,965     File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info
2022-08-05T12:18:00,965       self._log(INFO, msg, args, **kwargs)
2022-08-05T12:18:00,965     File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log
2022-08-05T12:18:00,966       self.handle(record)
2022-08-05T12:18:00,966     File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle
2022-08-05T12:18:00,966       self.callHandlers(record)
2022-08-05T12:18:00,967     File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers
2022-08-05T12:18:00,967       hdlr.handle(record)
2022-08-05T12:18:00,967     File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle
2022-08-05T12:18:00,967       self.emit(record)
2022-08-05T12:18:00,968     File "/tmp/pip-standalone-pip-0qgzayrf/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit
2022-08-05T12:18:00,968       self.handleError(record)
2022-08-05T12:18:00,968   Message: '[present-rich] %s'
2022-08-05T12:18:00,969   Arguments: (UpgradePrompt(old='22.1.2', new='22.2.1'),)
2022-08-05T12:18:01,562   Installing build dependencies: finished with status 'done'
2022-08-05T12:18:01,610   Getting requirements to build wheel: started
2022-08-05T12:18:01,612   Running command Getting requirements to build wheel
2022-08-05T12:18:03,918   Getting requirements to build wheel: finished with status 'done'
2022-08-05T12:18:03,948   Created temporary directory: /tmp/pip-modern-metadata-rhskwnky
2022-08-05T12:18:03,956   Preparing metadata (pyproject.toml): started
2022-08-05T12:18:03,958   Running command Preparing metadata (pyproject.toml)
2022-08-05T12:18:12,570   running dist_info
2022-08-05T12:18:13,201   creating /tmp/pip-modern-metadata-rhskwnky/altocumulus.egg-info
2022-08-05T12:18:13,798   writing /tmp/pip-modern-metadata-rhskwnky/altocumulus.egg-info/PKG-INFO
2022-08-05T12:18:14,363   writing dependency_links to /tmp/pip-modern-metadata-rhskwnky/altocumulus.egg-info/dependency_links.txt
2022-08-05T12:18:16,044   writing entry points to /tmp/pip-modern-metadata-rhskwnky/altocumulus.egg-info/entry_points.txt
2022-08-05T12:18:17,166   writing requirements to /tmp/pip-modern-metadata-rhskwnky/altocumulus.egg-info/requires.txt
2022-08-05T12:18:17,729   writing top-level names to /tmp/pip-modern-metadata-rhskwnky/altocumulus.egg-info/top_level.txt
2022-08-05T12:18:17,732   writing manifest file '/tmp/pip-modern-metadata-rhskwnky/altocumulus.egg-info/SOURCES.txt'
2022-08-05T12:18:18,488   listing git files failed - pretending there aren't any
2022-08-05T12:18:18,509   reading manifest file '/tmp/pip-modern-metadata-rhskwnky/altocumulus.egg-info/SOURCES.txt'
2022-08-05T12:18:18,514   adding license file 'LICENSE'
2022-08-05T12:18:18,521   writing manifest file '/tmp/pip-modern-metadata-rhskwnky/altocumulus.egg-info/SOURCES.txt'
2022-08-05T12:18:18,525   creating '/tmp/pip-modern-metadata-rhskwnky/altocumulus-2.1.0.dist-info'
2022-08-05T12:18:18,832   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-08-05T12:18:19,073   Preparing metadata (pyproject.toml): finished with status 'done'
2022-08-05T12:18:19,087   Source in /tmp/pip-wheel-is59i7do/altocumulus_ffd332ab0545432ca8e86ba9c87ab3ea has version 2.1.0, which satisfies requirement altocumulus==2.1.0 from https://files.pythonhosted.org/packages/40/b8/ccbd0bc3dd767591f3a103b59467df99d2a04b1a29892a4d4573059dc71c/altocumulus-2.1.0.tar.gz#sha256=6d86d52e0d3ac4bf72c2d92ef8ede6bc25f6119352b6fdea25b0f271c4937196
2022-08-05T12:18:19,090   Removed altocumulus==2.1.0 from https://files.pythonhosted.org/packages/40/b8/ccbd0bc3dd767591f3a103b59467df99d2a04b1a29892a4d4573059dc71c/altocumulus-2.1.0.tar.gz#sha256=6d86d52e0d3ac4bf72c2d92ef8ede6bc25f6119352b6fdea25b0f271c4937196 from build tracker '/tmp/pip-build-tracker-i1ti4euv'
2022-08-05T12:18:19,103 Created temporary directory: /tmp/pip-unpack-5x8q3vq1
2022-08-05T12:18:19,104 Building wheels for collected packages: altocumulus
2022-08-05T12:18:19,114   Created temporary directory: /tmp/pip-wheel-_3c2s707
2022-08-05T12:18:19,115   Destination directory: /tmp/pip-wheel-_3c2s707
2022-08-05T12:18:19,120   Building wheel for altocumulus (pyproject.toml): started
2022-08-05T12:18:19,122   Running command Building wheel for altocumulus (pyproject.toml)
2022-08-05T12:18:27,275   running bdist_wheel
2022-08-05T12:18:28,471   running build
2022-08-05T12:18:28,472   running build_py
2022-08-05T12:18:29,120   creating build
2022-08-05T12:18:29,121   creating build/lib
2022-08-05T12:18:29,122   creating build/lib/alto
2022-08-05T12:18:29,124   copying alto/__main__.py -> build/lib/alto
2022-08-05T12:18:29,127   copying alto/__init__.py -> build/lib/alto
2022-08-05T12:18:29,129   running egg_info
2022-08-05T12:18:30,347   writing altocumulus.egg-info/PKG-INFO
2022-08-05T12:18:30,912   writing dependency_links to altocumulus.egg-info/dependency_links.txt
2022-08-05T12:18:32,596   writing entry points to altocumulus.egg-info/entry_points.txt
2022-08-05T12:18:33,717   writing requirements to altocumulus.egg-info/requires.txt
2022-08-05T12:18:34,280   writing top-level names to altocumulus.egg-info/top_level.txt
2022-08-05T12:18:34,398   listing git files failed - pretending there aren't any
2022-08-05T12:18:34,419   reading manifest file 'altocumulus.egg-info/SOURCES.txt'
2022-08-05T12:18:34,447   adding license file 'LICENSE'
2022-08-05T12:18:34,457   writing manifest file 'altocumulus.egg-info/SOURCES.txt'
2022-08-05T12:18:34,463   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-08-05T12:18:34,464       ############################
2022-08-05T12:18:34,464       # Package would be ignored #
2022-08-05T12:18:34,464       ############################
2022-08-05T12:18:34,465       Python recognizes 'alto.commands' as an importable package, however it is
2022-08-05T12:18:34,465       included in the distribution as "data".
2022-08-05T12:18:34,465       This behavior is likely to change in future versions of setuptools (and
2022-08-05T12:18:34,465       therefore is considered deprecated).

2022-08-05T12:18:34,466       Please make sure that 'alto.commands' is included as a package by using
2022-08-05T12:18:34,466       setuptools' `packages` configuration field or the proper discovery methods.

2022-08-05T12:18:34,467       You can read more about "package discovery" and "data files" on setuptools
2022-08-05T12:18:34,467       documentation page.


2022-08-05T12:18:34,468   !!

2022-08-05T12:18:34,469     check.warn(importable)
2022-08-05T12:18:34,469   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-08-05T12:18:34,470       ############################
2022-08-05T12:18:34,470       # Package would be ignored #
2022-08-05T12:18:34,471       ############################
2022-08-05T12:18:34,471       Python recognizes 'alto.commands.cromwell' as an importable package, however it is
2022-08-05T12:18:34,471       included in the distribution as "data".
2022-08-05T12:18:34,471       This behavior is likely to change in future versions of setuptools (and
2022-08-05T12:18:34,472       therefore is considered deprecated).

2022-08-05T12:18:34,472       Please make sure that 'alto.commands.cromwell' is included as a package by using
2022-08-05T12:18:34,472       setuptools' `packages` configuration field or the proper discovery methods.

2022-08-05T12:18:34,473       You can read more about "package discovery" and "data files" on setuptools
2022-08-05T12:18:34,473       documentation page.


2022-08-05T12:18:34,474   !!

2022-08-05T12:18:34,475     check.warn(importable)
2022-08-05T12:18:34,475   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-08-05T12:18:34,476       ############################
2022-08-05T12:18:34,476       # Package would be ignored #
2022-08-05T12:18:34,476       ############################
2022-08-05T12:18:34,477       Python recognizes 'alto.commands.terra' as an importable package, however it is
2022-08-05T12:18:34,477       included in the distribution as "data".
2022-08-05T12:18:34,477       This behavior is likely to change in future versions of setuptools (and
2022-08-05T12:18:34,477       therefore is considered deprecated).

2022-08-05T12:18:34,478       Please make sure that 'alto.commands.terra' is included as a package by using
2022-08-05T12:18:34,478       setuptools' `packages` configuration field or the proper discovery methods.

2022-08-05T12:18:34,479       You can read more about "package discovery" and "data files" on setuptools
2022-08-05T12:18:34,479       documentation page.


2022-08-05T12:18:34,480   !!

2022-08-05T12:18:34,481     check.warn(importable)
2022-08-05T12:18:34,481   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-08-05T12:18:34,482       ############################
2022-08-05T12:18:34,482       # Package would be ignored #
2022-08-05T12:18:34,482       ############################
2022-08-05T12:18:34,482       Python recognizes 'alto.tests' as an importable package, however it is
2022-08-05T12:18:34,483       included in the distribution as "data".
2022-08-05T12:18:34,483       This behavior is likely to change in future versions of setuptools (and
2022-08-05T12:18:34,483       therefore is considered deprecated).

2022-08-05T12:18:34,484       Please make sure that 'alto.tests' is included as a package by using
2022-08-05T12:18:34,484       setuptools' `packages` configuration field or the proper discovery methods.

2022-08-05T12:18:34,485       You can read more about "package discovery" and "data files" on setuptools
2022-08-05T12:18:34,485       documentation page.


2022-08-05T12:18:34,486   !!

2022-08-05T12:18:34,487     check.warn(importable)
2022-08-05T12:18:34,487   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-08-05T12:18:34,488       ############################
2022-08-05T12:18:34,488       # Package would be ignored #
2022-08-05T12:18:34,488       ############################
2022-08-05T12:18:34,489       Python recognizes 'alto.tests.inputs' as an importable package, however it is
2022-08-05T12:18:34,489       included in the distribution as "data".
2022-08-05T12:18:34,489       This behavior is likely to change in future versions of setuptools (and
2022-08-05T12:18:34,490       therefore is considered deprecated).

2022-08-05T12:18:34,490       Please make sure that 'alto.tests.inputs' is included as a package by using
2022-08-05T12:18:34,491       setuptools' `packages` configuration field or the proper discovery methods.

2022-08-05T12:18:34,491       You can read more about "package discovery" and "data files" on setuptools
2022-08-05T12:18:34,491       documentation page.


2022-08-05T12:18:34,492   !!

2022-08-05T12:18:34,493     check.warn(importable)
2022-08-05T12:18:34,494   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-08-05T12:18:34,495       ############################
2022-08-05T12:18:34,495       # Package would be ignored #
2022-08-05T12:18:34,495       ############################
2022-08-05T12:18:34,495       Python recognizes 'alto.tests.inputs.flowcell1.s1' as an importable package, however it is
2022-08-05T12:18:34,496       included in the distribution as "data".
2022-08-05T12:18:34,496       This behavior is likely to change in future versions of setuptools (and
2022-08-05T12:18:34,496       therefore is considered deprecated).

2022-08-05T12:18:34,497       Please make sure that 'alto.tests.inputs.flowcell1.s1' is included as a package by using
2022-08-05T12:18:34,498       setuptools' `packages` configuration field or the proper discovery methods.

2022-08-05T12:18:34,498       You can read more about "package discovery" and "data files" on setuptools
2022-08-05T12:18:34,499       documentation page.


2022-08-05T12:18:34,499   !!

2022-08-05T12:18:34,500     check.warn(importable)
2022-08-05T12:18:34,501   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-08-05T12:18:34,501       ############################
2022-08-05T12:18:34,502       # Package would be ignored #
2022-08-05T12:18:34,502       ############################
2022-08-05T12:18:34,503       Python recognizes 'alto.tests.inputs.flowcell1.s2' as an importable package, however it is
2022-08-05T12:18:34,503       included in the distribution as "data".
2022-08-05T12:18:34,503       This behavior is likely to change in future versions of setuptools (and
2022-08-05T12:18:34,504       therefore is considered deprecated).

2022-08-05T12:18:34,504       Please make sure that 'alto.tests.inputs.flowcell1.s2' is included as a package by using
2022-08-05T12:18:34,505       setuptools' `packages` configuration field or the proper discovery methods.

2022-08-05T12:18:34,505       You can read more about "package discovery" and "data files" on setuptools
2022-08-05T12:18:34,505       documentation page.


2022-08-05T12:18:34,506   !!

2022-08-05T12:18:34,507     check.warn(importable)
2022-08-05T12:18:34,507   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-08-05T12:18:34,508       ############################
2022-08-05T12:18:34,508       # Package would be ignored #
2022-08-05T12:18:34,509       ############################
2022-08-05T12:18:34,509       Python recognizes 'alto.tests.inputs.flowcell2.s1' as an importable package, however it is
2022-08-05T12:18:34,510       included in the distribution as "data".
2022-08-05T12:18:34,510       This behavior is likely to change in future versions of setuptools (and
2022-08-05T12:18:34,510       therefore is considered deprecated).

2022-08-05T12:18:34,511       Please make sure that 'alto.tests.inputs.flowcell2.s1' is included as a package by using
2022-08-05T12:18:34,511       setuptools' `packages` configuration field or the proper discovery methods.

2022-08-05T12:18:34,512       You can read more about "package discovery" and "data files" on setuptools
2022-08-05T12:18:34,512       documentation page.


2022-08-05T12:18:34,513   !!

2022-08-05T12:18:34,514     check.warn(importable)
2022-08-05T12:18:34,514   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-08-05T12:18:34,515       ############################
2022-08-05T12:18:34,515       # Package would be ignored #
2022-08-05T12:18:34,516       ############################
2022-08-05T12:18:34,516       Python recognizes 'alto.tests.inputs.flowcell2.s2' as an importable package, however it is
2022-08-05T12:18:34,516       included in the distribution as "data".
2022-08-05T12:18:34,517       This behavior is likely to change in future versions of setuptools (and
2022-08-05T12:18:34,517       therefore is considered deprecated).

2022-08-05T12:18:34,518       Please make sure that 'alto.tests.inputs.flowcell2.s2' is included as a package by using
2022-08-05T12:18:34,518       setuptools' `packages` configuration field or the proper discovery methods.

2022-08-05T12:18:34,519       You can read more about "package discovery" and "data files" on setuptools
2022-08-05T12:18:34,519       documentation page.


2022-08-05T12:18:34,520   !!

2022-08-05T12:18:34,521     check.warn(importable)
2022-08-05T12:18:34,521   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-08-05T12:18:34,522       ############################
2022-08-05T12:18:34,522       # Package would be ignored #
2022-08-05T12:18:34,523       ############################
2022-08-05T12:18:34,523       Python recognizes 'alto.tests.inputs.test_sample' as an importable package, however it is
2022-08-05T12:18:34,523       included in the distribution as "data".
2022-08-05T12:18:34,524       This behavior is likely to change in future versions of setuptools (and
2022-08-05T12:18:34,524       therefore is considered deprecated).

2022-08-05T12:18:34,525       Please make sure that 'alto.tests.inputs.test_sample' is included as a package by using
2022-08-05T12:18:34,525       setuptools' `packages` configuration field or the proper discovery methods.

2022-08-05T12:18:34,525       You can read more about "package discovery" and "data files" on setuptools
2022-08-05T12:18:34,526       documentation page.


2022-08-05T12:18:34,527   !!

2022-08-05T12:18:34,528     check.warn(importable)
2022-08-05T12:18:34,528   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-08-05T12:18:34,529       ############################
2022-08-05T12:18:34,529       # Package would be ignored #
2022-08-05T12:18:34,529       ############################
2022-08-05T12:18:34,530       Python recognizes 'alto.utils' as an importable package, however it is
2022-08-05T12:18:34,530       included in the distribution as "data".
2022-08-05T12:18:34,530       This behavior is likely to change in future versions of setuptools (and
2022-08-05T12:18:34,530       therefore is considered deprecated).

2022-08-05T12:18:34,531       Please make sure that 'alto.utils' is included as a package by using
2022-08-05T12:18:34,531       setuptools' `packages` configuration field or the proper discovery methods.

2022-08-05T12:18:34,533       You can read more about "package discovery" and "data files" on setuptools
2022-08-05T12:18:34,533       documentation page.


2022-08-05T12:18:34,534   !!

2022-08-05T12:18:34,535     check.warn(importable)
2022-08-05T12:18:34,535   creating build/lib/alto/commands
2022-08-05T12:18:34,535   copying alto/commands/__init__.py -> build/lib/alto/commands
2022-08-05T12:18:34,535   copying alto/commands/parse_monitoring_log.py -> build/lib/alto/commands
2022-08-05T12:18:34,536   copying alto/commands/query.py -> build/lib/alto/commands
2022-08-05T12:18:34,536   copying alto/commands/upload.py -> build/lib/alto/commands
2022-08-05T12:18:34,536   creating build/lib/alto/commands/cromwell
2022-08-05T12:18:34,537   copying alto/commands/cromwell/__init__.py -> build/lib/alto/commands/cromwell
2022-08-05T12:18:34,538   copying alto/commands/cromwell/abort.py -> build/lib/alto/commands/cromwell
2022-08-05T12:18:34,538   copying alto/commands/cromwell/check_status.py -> build/lib/alto/commands/cromwell
2022-08-05T12:18:34,539   copying alto/commands/cromwell/get_logs.py -> build/lib/alto/commands/cromwell
2022-08-05T12:18:34,539   copying alto/commands/cromwell/get_metadata.py -> build/lib/alto/commands/cromwell
2022-08-05T12:18:34,539   copying alto/commands/cromwell/list_jobs.py -> build/lib/alto/commands/cromwell
2022-08-05T12:18:34,540   copying alto/commands/cromwell/run.py -> build/lib/alto/commands/cromwell
2022-08-05T12:18:34,540   creating build/lib/alto/commands/terra
2022-08-05T12:18:34,542   copying alto/commands/terra/__init__.py -> build/lib/alto/commands/terra
2022-08-05T12:18:34,546   copying alto/commands/terra/add_method.py -> build/lib/alto/commands/terra
2022-08-05T12:18:34,550   copying alto/commands/terra/remove_method.py -> build/lib/alto/commands/terra
2022-08-05T12:18:34,553   copying alto/commands/terra/run.py -> build/lib/alto/commands/terra
2022-08-05T12:18:34,558   copying alto/commands/terra/storage_estimate.py -> build/lib/alto/commands/terra
2022-08-05T12:18:34,562   creating build/lib/alto/tests
2022-08-05T12:18:34,563   copying alto/tests/__init__.py -> build/lib/alto/tests
2022-08-05T12:18:34,567   copying alto/tests/command_tests.py -> build/lib/alto/tests
2022-08-05T12:18:34,571   copying alto/tests/test.json -> build/lib/alto/tests
2022-08-05T12:18:34,574   creating build/lib/alto/tests/inputs
2022-08-05T12:18:34,576   copying alto/tests/inputs/echo.wdl -> build/lib/alto/tests/inputs
2022-08-05T12:18:34,580   creating build/lib/alto/tests/inputs/flowcell1
2022-08-05T12:18:34,580   creating build/lib/alto/tests/inputs/flowcell1/s1
2022-08-05T12:18:34,582   copying alto/tests/inputs/flowcell1/s1/s1_I1.fastq.gz -> build/lib/alto/tests/inputs/flowcell1/s1
2022-08-05T12:18:34,585   copying alto/tests/inputs/flowcell1/s1/s1_R1.fastq.gz -> build/lib/alto/tests/inputs/flowcell1/s1
2022-08-05T12:18:34,589   copying alto/tests/inputs/flowcell1/s1/s1_R2.fastq.gz -> build/lib/alto/tests/inputs/flowcell1/s1
2022-08-05T12:18:34,592   creating build/lib/alto/tests/inputs/flowcell1/s2
2022-08-05T12:18:34,593   copying alto/tests/inputs/flowcell1/s2/s2_I1.fastq.gz -> build/lib/alto/tests/inputs/flowcell1/s2
2022-08-05T12:18:34,597   copying alto/tests/inputs/flowcell1/s2/s2_R1.fastq.gz -> build/lib/alto/tests/inputs/flowcell1/s2
2022-08-05T12:18:34,600   copying alto/tests/inputs/flowcell1/s2/s2_R2.fastq.gz -> build/lib/alto/tests/inputs/flowcell1/s2
2022-08-05T12:18:34,603   creating build/lib/alto/tests/inputs/flowcell2
2022-08-05T12:18:34,604   creating build/lib/alto/tests/inputs/flowcell2/s1
2022-08-05T12:18:34,605   copying alto/tests/inputs/flowcell2/s1/s1_I1.fastq.gz -> build/lib/alto/tests/inputs/flowcell2/s1
2022-08-05T12:18:34,609   copying alto/tests/inputs/flowcell2/s1/s1_R1.fastq.gz -> build/lib/alto/tests/inputs/flowcell2/s1
2022-08-05T12:18:34,612   copying alto/tests/inputs/flowcell2/s1/s1_R2.fastq.gz -> build/lib/alto/tests/inputs/flowcell2/s1
2022-08-05T12:18:34,615   creating build/lib/alto/tests/inputs/flowcell2/s2
2022-08-05T12:18:34,616   copying alto/tests/inputs/flowcell2/s2/s2_I1.fastq.gz -> build/lib/alto/tests/inputs/flowcell2/s2
2022-08-05T12:18:34,620   copying alto/tests/inputs/flowcell2/s2/s2_R1.fastq.gz -> build/lib/alto/tests/inputs/flowcell2/s2
2022-08-05T12:18:34,623   copying alto/tests/inputs/flowcell2/s2/s2_R2.fastq.gz -> build/lib/alto/tests/inputs/flowcell2/s2
2022-08-05T12:18:34,626   creating build/lib/alto/tests/inputs/test_sample
2022-08-05T12:18:34,627   copying alto/tests/inputs/test_sample/test_sample_S1_L001_I1_001.fastq.gz -> build/lib/alto/tests/inputs/test_sample
2022-08-05T12:18:34,631   copying alto/tests/inputs/test_sample/test_sample_S1_L001_R1_001.fastq.gz -> build/lib/alto/tests/inputs/test_sample
2022-08-05T12:18:34,634   copying alto/tests/inputs/test_sample/test_sample_S1_L001_R2_001.fastq.gz -> build/lib/alto/tests/inputs/test_sample
2022-08-05T12:18:34,637   creating build/lib/alto/utils
2022-08-05T12:18:34,638   copying alto/utils/__init__.py -> build/lib/alto/utils
2022-08-05T12:18:34,642   copying alto/utils/bcl_utils.py -> build/lib/alto/utils
2022-08-05T12:18:34,646   copying alto/utils/dockstore_utils.py -> build/lib/alto/utils
2022-08-05T12:18:34,651   copying alto/utils/fastq_utils.py -> build/lib/alto/utils
2022-08-05T12:18:34,655   copying alto/utils/firecloud_utils.py -> build/lib/alto/utils
2022-08-05T12:18:34,660   copying alto/utils/io_utils.py -> build/lib/alto/utils
2022-08-05T12:18:35,871   installing to build/bdist.linux-armv7l/wheel
2022-08-05T12:18:35,872   running install
2022-08-05T12:18:35,935   running install_lib
2022-08-05T12:18:36,532   creating build/bdist.linux-armv7l
2022-08-05T12:18:36,533   creating build/bdist.linux-armv7l/wheel
2022-08-05T12:18:36,536   creating build/bdist.linux-armv7l/wheel/alto
2022-08-05T12:18:36,540   creating build/bdist.linux-armv7l/wheel/alto/commands
2022-08-05T12:18:36,543   creating build/bdist.linux-armv7l/wheel/alto/commands/terra
2022-08-05T12:18:36,545   copying build/lib/alto/commands/terra/run.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra
2022-08-05T12:18:36,550   copying build/lib/alto/commands/terra/__init__.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra
2022-08-05T12:18:36,554   copying build/lib/alto/commands/terra/remove_method.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra
2022-08-05T12:18:36,558   copying build/lib/alto/commands/terra/storage_estimate.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra
2022-08-05T12:18:36,561   copying build/lib/alto/commands/terra/add_method.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra
2022-08-05T12:18:36,565   copying build/lib/alto/commands/parse_monitoring_log.py -> build/bdist.linux-armv7l/wheel/alto/commands
2022-08-05T12:18:36,568   copying build/lib/alto/commands/query.py -> build/bdist.linux-armv7l/wheel/alto/commands
2022-08-05T12:18:36,572   copying build/lib/alto/commands/__init__.py -> build/bdist.linux-armv7l/wheel/alto/commands
2022-08-05T12:18:36,575   copying build/lib/alto/commands/upload.py -> build/bdist.linux-armv7l/wheel/alto/commands
2022-08-05T12:18:36,580   creating build/bdist.linux-armv7l/wheel/alto/commands/cromwell
2022-08-05T12:18:36,582   copying build/lib/alto/commands/cromwell/check_status.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell
2022-08-05T12:18:36,585   copying build/lib/alto/commands/cromwell/list_jobs.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell
2022-08-05T12:18:36,590   copying build/lib/alto/commands/cromwell/run.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell
2022-08-05T12:18:36,594   copying build/lib/alto/commands/cromwell/get_metadata.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell
2022-08-05T12:18:36,598   copying build/lib/alto/commands/cromwell/abort.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell
2022-08-05T12:18:36,602   copying build/lib/alto/commands/cromwell/__init__.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell
2022-08-05T12:18:36,605   copying build/lib/alto/commands/cromwell/get_logs.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell
2022-08-05T12:18:36,609   copying build/lib/alto/__main__.py -> build/bdist.linux-armv7l/wheel/alto
2022-08-05T12:18:36,612   copying build/lib/alto/__init__.py -> build/bdist.linux-armv7l/wheel/alto
2022-08-05T12:18:36,616   creating build/bdist.linux-armv7l/wheel/alto/tests
2022-08-05T12:18:36,619   creating build/bdist.linux-armv7l/wheel/alto/tests/inputs
2022-08-05T12:18:36,622   creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1
2022-08-05T12:18:36,624   creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s2
2022-08-05T12:18:36,626   copying build/lib/alto/tests/inputs/flowcell1/s2/s2_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s2
2022-08-05T12:18:36,629   copying build/lib/alto/tests/inputs/flowcell1/s2/s2_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s2
2022-08-05T12:18:36,632   copying build/lib/alto/tests/inputs/flowcell1/s2/s2_I1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s2
2022-08-05T12:18:36,636   creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s1
2022-08-05T12:18:36,637   copying build/lib/alto/tests/inputs/flowcell1/s1/s1_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s1
2022-08-05T12:18:36,640   copying build/lib/alto/tests/inputs/flowcell1/s1/s1_I1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s1
2022-08-05T12:18:36,643   copying build/lib/alto/tests/inputs/flowcell1/s1/s1_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s1
2022-08-05T12:18:36,647   creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/test_sample
2022-08-05T12:18:36,649   copying build/lib/alto/tests/inputs/test_sample/test_sample_S1_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/test_sample
2022-08-05T12:18:36,652   copying build/lib/alto/tests/inputs/test_sample/test_sample_S1_L001_I1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/test_sample
2022-08-05T12:18:36,655   copying build/lib/alto/tests/inputs/test_sample/test_sample_S1_L001_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/test_sample
2022-08-05T12:18:36,659   creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2
2022-08-05T12:18:36,662   creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s2
2022-08-05T12:18:36,664   copying build/lib/alto/tests/inputs/flowcell2/s2/s2_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s2
2022-08-05T12:18:36,667   copying build/lib/alto/tests/inputs/flowcell2/s2/s2_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s2
2022-08-05T12:18:36,670   copying build/lib/alto/tests/inputs/flowcell2/s2/s2_I1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s2
2022-08-05T12:18:36,674   creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s1
2022-08-05T12:18:36,676   copying build/lib/alto/tests/inputs/flowcell2/s1/s1_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s1
2022-08-05T12:18:36,679   copying build/lib/alto/tests/inputs/flowcell2/s1/s1_I1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s1
2022-08-05T12:18:36,682   copying build/lib/alto/tests/inputs/flowcell2/s1/s1_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s1
2022-08-05T12:18:36,685   copying build/lib/alto/tests/inputs/echo.wdl -> build/bdist.linux-armv7l/wheel/alto/tests/inputs
2022-08-05T12:18:36,688   copying build/lib/alto/tests/command_tests.py -> build/bdist.linux-armv7l/wheel/alto/tests
2022-08-05T12:18:36,693   copying build/lib/alto/tests/__init__.py -> build/bdist.linux-armv7l/wheel/alto/tests
2022-08-05T12:18:36,695   copying build/lib/alto/tests/test.json -> build/bdist.linux-armv7l/wheel/alto/tests
2022-08-05T12:18:36,700   creating build/bdist.linux-armv7l/wheel/alto/utils
2022-08-05T12:18:36,701   copying build/lib/alto/utils/fastq_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils
2022-08-05T12:18:36,705   copying build/lib/alto/utils/firecloud_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils
2022-08-05T12:18:36,710   copying build/lib/alto/utils/io_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils
2022-08-05T12:18:36,715   copying build/lib/alto/utils/__init__.py -> build/bdist.linux-armv7l/wheel/alto/utils
2022-08-05T12:18:36,718   copying build/lib/alto/utils/dockstore_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils
2022-08-05T12:18:36,723   copying build/lib/alto/utils/bcl_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils
2022-08-05T12:18:36,726   running install_egg_info
2022-08-05T12:18:37,326   Copying altocumulus.egg-info to build/bdist.linux-armv7l/wheel/altocumulus-2.1.0-py3.9.egg-info
2022-08-05T12:18:37,353   running install_scripts
2022-08-05T12:18:37,539   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-08-05T12:18:37,548   creating build/bdist.linux-armv7l/wheel/altocumulus-2.1.0.dist-info/WHEEL
2022-08-05T12:18:37,553   creating '/tmp/pip-wheel-_3c2s707/tmp0atrmqla/altocumulus-2.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-08-05T12:18:37,557   adding 'alto/__init__.py'
2022-08-05T12:18:37,559   adding 'alto/__main__.py'
2022-08-05T12:18:37,563   adding 'alto/commands/__init__.py'
2022-08-05T12:18:37,565   adding 'alto/commands/parse_monitoring_log.py'
2022-08-05T12:18:37,568   adding 'alto/commands/query.py'
2022-08-05T12:18:37,571   adding 'alto/commands/upload.py'
2022-08-05T12:18:37,574   adding 'alto/commands/cromwell/__init__.py'
2022-08-05T12:18:37,577   adding 'alto/commands/cromwell/abort.py'
2022-08-05T12:18:37,580   adding 'alto/commands/cromwell/check_status.py'
2022-08-05T12:18:37,583   adding 'alto/commands/cromwell/get_logs.py'
2022-08-05T12:18:37,585   adding 'alto/commands/cromwell/get_metadata.py'
2022-08-05T12:18:37,588   adding 'alto/commands/cromwell/list_jobs.py'
2022-08-05T12:18:37,592   adding 'alto/commands/cromwell/run.py'
2022-08-05T12:18:37,595   adding 'alto/commands/terra/__init__.py'
2022-08-05T12:18:37,598   adding 'alto/commands/terra/add_method.py'
2022-08-05T12:18:37,601   adding 'alto/commands/terra/remove_method.py'
2022-08-05T12:18:37,604   adding 'alto/commands/terra/run.py'
2022-08-05T12:18:37,607   adding 'alto/commands/terra/storage_estimate.py'
2022-08-05T12:18:37,610   adding 'alto/tests/__init__.py'
2022-08-05T12:18:37,613   adding 'alto/tests/command_tests.py'
2022-08-05T12:18:37,615   adding 'alto/tests/test.json'
2022-08-05T12:18:37,618   adding 'alto/tests/inputs/echo.wdl'
2022-08-05T12:18:37,623   adding 'alto/tests/inputs/flowcell1/s1/s1_I1.fastq.gz'
2022-08-05T12:18:37,625   adding 'alto/tests/inputs/flowcell1/s1/s1_R1.fastq.gz'
2022-08-05T12:18:37,627   adding 'alto/tests/inputs/flowcell1/s1/s1_R2.fastq.gz'
2022-08-05T12:18:37,631   adding 'alto/tests/inputs/flowcell1/s2/s2_I1.fastq.gz'
2022-08-05T12:18:37,633   adding 'alto/tests/inputs/flowcell1/s2/s2_R1.fastq.gz'
2022-08-05T12:18:37,635   adding 'alto/tests/inputs/flowcell1/s2/s2_R2.fastq.gz'
2022-08-05T12:18:37,639   adding 'alto/tests/inputs/flowcell2/s1/s1_I1.fastq.gz'
2022-08-05T12:18:37,641   adding 'alto/tests/inputs/flowcell2/s1/s1_R1.fastq.gz'
2022-08-05T12:18:37,643   adding 'alto/tests/inputs/flowcell2/s1/s1_R2.fastq.gz'
2022-08-05T12:18:37,646   adding 'alto/tests/inputs/flowcell2/s2/s2_I1.fastq.gz'
2022-08-05T12:18:37,648   adding 'alto/tests/inputs/flowcell2/s2/s2_R1.fastq.gz'
2022-08-05T12:18:37,650   adding 'alto/tests/inputs/flowcell2/s2/s2_R2.fastq.gz'
2022-08-05T12:18:37,654   adding 'alto/tests/inputs/test_sample/test_sample_S1_L001_I1_001.fastq.gz'
2022-08-05T12:18:37,656   adding 'alto/tests/inputs/test_sample/test_sample_S1_L001_R1_001.fastq.gz'
2022-08-05T12:18:37,658   adding 'alto/tests/inputs/test_sample/test_sample_S1_L001_R2_001.fastq.gz'
2022-08-05T12:18:37,662   adding 'alto/utils/__init__.py'
2022-08-05T12:18:37,665   adding 'alto/utils/bcl_utils.py'
2022-08-05T12:18:37,669   adding 'alto/utils/dockstore_utils.py'
2022-08-05T12:18:37,671   adding 'alto/utils/fastq_utils.py'
2022-08-05T12:18:37,675   adding 'alto/utils/firecloud_utils.py'
2022-08-05T12:18:37,679   adding 'alto/utils/io_utils.py'
2022-08-05T12:18:37,684   adding 'altocumulus-2.1.0.dist-info/LICENSE'
2022-08-05T12:18:37,686   adding 'altocumulus-2.1.0.dist-info/METADATA'
2022-08-05T12:18:37,688   adding 'altocumulus-2.1.0.dist-info/WHEEL'
2022-08-05T12:18:37,690   adding 'altocumulus-2.1.0.dist-info/entry_points.txt'
2022-08-05T12:18:37,692   adding 'altocumulus-2.1.0.dist-info/top_level.txt'
2022-08-05T12:18:37,694   adding 'altocumulus-2.1.0.dist-info/RECORD'
2022-08-05T12:18:37,699   removing build/bdist.linux-armv7l/wheel
2022-08-05T12:18:38,014   Building wheel for altocumulus (pyproject.toml): finished with status 'done'
2022-08-05T12:18:38,028   Created wheel for altocumulus: filename=altocumulus-2.1.0-py3-none-any.whl size=35759 sha256=c9ebb6759ad8b9adbbe22c9beefd065e8d1243842068eef76fc57cbfce15d005
2022-08-05T12:18:38,030   Stored in directory: /tmp/pip-ephem-wheel-cache-0gz1e9dp/wheels/dc/c1/73/c111ea65d35278245f074477fd2635ab4a35c0e0114f972547
2022-08-05T12:18:38,055 Successfully built altocumulus
2022-08-05T12:18:38,064 Removed build tracker: '/tmp/pip-build-tracker-i1ti4euv'