2022-08-05T22:20:40,058 Created temporary directory: /tmp/pip-ephem-wheel-cache-rok5tph1 2022-08-05T22:20:40,063 Created temporary directory: /tmp/pip-build-tracker-65jepog_ 2022-08-05T22:20:40,064 Initialized build tracking at /tmp/pip-build-tracker-65jepog_ 2022-08-05T22:20:40,064 Created build tracker: /tmp/pip-build-tracker-65jepog_ 2022-08-05T22:20:40,065 Entered build tracker: /tmp/pip-build-tracker-65jepog_ 2022-08-05T22:20:40,066 Created temporary directory: /tmp/pip-wheel-zw6a5_ed 2022-08-05T22:20:40,141 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-05T22:20:40,150 2 location(s) to search for versions of glycopeptidepy: 2022-08-05T22:20:40,150 * https://pypi.org/simple/glycopeptidepy/ 2022-08-05T22:20:40,150 * https://www.piwheels.org/simple/glycopeptidepy/ 2022-08-05T22:20:40,151 Fetching project page and analyzing links: https://pypi.org/simple/glycopeptidepy/ 2022-08-05T22:20:40,152 Getting page https://pypi.org/simple/glycopeptidepy/ 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https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.12-cp35-cp35m-linux_armv6l.whl#sha256=528efb8cef6c4e77bbea7b6d3558caa9e290c266ad3b1c36a90fdee4108b69a8 (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-08-05T22:20:40,664 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.11-cp39-cp39-linux_armv7l.whl#sha256=a555b804f33290b7294d8f46ae18345ce11e666ce1a8a12613892a61f05928a5 (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-08-05T22:20:40,664 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.11-cp39-cp39-linux_armv6l.whl#sha256=a555b804f33290b7294d8f46ae18345ce11e666ce1a8a12613892a61f05928a5 (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-08-05T22:20:40,665 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.11-cp37-cp37m-linux_armv7l.whl#sha256=cbc59c2f6cbed8fcae4021d81371dbf656d5bf0727116b76996d517b4cc92773 (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-08-05T22:20:40,665 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.11-cp37-cp37m-linux_armv6l.whl#sha256=cbc59c2f6cbed8fcae4021d81371dbf656d5bf0727116b76996d517b4cc92773 (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-08-05T22:20:40,666 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.11-cp35-cp35m-linux_armv7l.whl#sha256=d7ba83964cd9bffd9abb916734d5c4da44bcac10a928d9fc6972757e10797040 (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-08-05T22:20:40,666 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.11-cp35-cp35m-linux_armv6l.whl#sha256=d7ba83964cd9bffd9abb916734d5c4da44bcac10a928d9fc6972757e10797040 (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-08-05T22:20:40,667 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.10-cp39-cp39-linux_armv7l.whl#sha256=c021e99b73c9666b181c9dd63ac9d39f19ef71c9697048d57ccb8286137282ff (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-08-05T22:20:40,667 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.10-cp39-cp39-linux_armv6l.whl#sha256=c021e99b73c9666b181c9dd63ac9d39f19ef71c9697048d57ccb8286137282ff (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-08-05T22:20:40,668 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.10-cp37-cp37m-linux_armv7l.whl#sha256=ace8cdcff8419d11f23c192e7c892a66cd296647c08dde058db25f341105fbc0 (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-08-05T22:20:40,668 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.10-cp37-cp37m-linux_armv6l.whl#sha256=ace8cdcff8419d11f23c192e7c892a66cd296647c08dde058db25f341105fbc0 (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-08-05T22:20:40,669 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.10-cp35-cp35m-linux_armv7l.whl#sha256=4945c8721ffb13f91738a4a21977110625ea7035f4dceecfc12ff163494351bd (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-08-05T22:20:40,669 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.10-cp35-cp35m-linux_armv6l.whl#sha256=4945c8721ffb13f91738a4a21977110625ea7035f4dceecfc12ff163494351bd (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-08-05T22:20:40,670 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.9-cp39-cp39-linux_armv7l.whl#sha256=0fe3f95737f2249e76bb8a5232177acd2755d76b4e90ee0cd51e81318a5248be (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-08-05T22:20:40,670 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.9-cp39-cp39-linux_armv6l.whl#sha256=0fe3f95737f2249e76bb8a5232177acd2755d76b4e90ee0cd51e81318a5248be (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-08-05T22:20:40,671 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.9-cp37-cp37m-linux_armv7l.whl#sha256=6ae840262993fd30d3cc9886ab9c084101c73d2fe5ff93f6790e38e23c8c45e8 (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-08-05T22:20:40,671 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.9-cp37-cp37m-linux_armv6l.whl#sha256=6ae840262993fd30d3cc9886ab9c084101c73d2fe5ff93f6790e38e23c8c45e8 (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-08-05T22:20:40,672 Skipping link: not a file: https://www.piwheels.org/simple/glycopeptidepy/ 2022-08-05T22:20:40,673 Skipping link: not a file: https://pypi.org/simple/glycopeptidepy/ 2022-08-05T22:20:40,720 Given no hashes to check 1 links for project 'glycopeptidepy': discarding no candidates 2022-08-05T22:20:40,762 Collecting glycopeptidepy==0.0.19 2022-08-05T22:20:40,766 Created temporary directory: /tmp/pip-unpack-0gkmjlwl 2022-08-05T22:20:40,867 Downloading glycopeptidepy-0.0.19.tar.gz (1.3 MB) 2022-08-05T22:20:42,844 Added glycopeptidepy==0.0.19 from https://files.pythonhosted.org/packages/70/95/943022113c136108e428626e06b6b0b54cc09255558ca5be29d71c92ecc8/glycopeptidepy-0.0.19.tar.gz#sha256=5df0545ae05bb65cd7c219836523cee40e06734751e25362b41d8efd32e618a6 to build tracker '/tmp/pip-build-tracker-65jepog_' 2022-08-05T22:20:42,856 Created temporary directory: /tmp/pip-build-env-1cg3_hya 2022-08-05T22:20:42,877 Created temporary directory: /tmp/pip-standalone-pip-p8llwst3 2022-08-05T22:20:45,263 Installing build dependencies: started 2022-08-05T22:20:45,265 Running command pip subprocess to install build dependencies 2022-08-05T22:20:56,680 Using pip 22.1.2 from /tmp/pip-standalone-pip-p8llwst3/__env_pip__.zip/pip (python 3.9) 2022-08-05T22:20:58,432 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-05T22:21:02,700 Collecting setuptools 2022-08-05T22:21:02,980 Using cached https://www.piwheels.org/simple/setuptools/setuptools-63.4.1-py3-none-any.whl (1.2 MB) 2022-08-05T22:21:03,667 Collecting wheel 2022-08-05T22:21:03,700 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-08-05T22:21:07,445 Collecting Cython 2022-08-05T22:21:08,462 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB) 2022-08-05T22:21:09,317 Collecting glypy 2022-08-05T22:21:09,363 Downloading https://www.piwheels.org/simple/glypy/glypy-1.0.7-cp39-cp39-linux_armv7l.whl (1.5 MB) 2022-08-05T22:21:09,742 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.5/1.5 MB 4.2 MB/s eta 0:00:00 2022-08-05T22:21:10,163 Collecting hjson 2022-08-05T22:21:10,204 Downloading https://www.piwheels.org/simple/hjson/hjson-3.0.2-py3-none-any.whl (54 kB) 2022-08-05T22:21:10,244 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.2/54.2 kB 2.2 MB/s eta 0:00:00 2022-08-05T22:21:10,518 Collecting six 2022-08-05T22:21:10,550 Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB) 2022-08-05T22:21:17,400 Installing collected packages: hjson, wheel, six, setuptools, Cython, glypy 2022-08-05T22:21:18,201 changing mode of /tmp/pip-build-env-1cg3_hya/overlay/bin/wheel to 755 2022-08-05T22:21:29,932 changing mode of /tmp/pip-build-env-1cg3_hya/overlay/bin/cygdb to 755 2022-08-05T22:21:29,936 changing mode of /tmp/pip-build-env-1cg3_hya/overlay/bin/cython to 755 2022-08-05T22:21:29,941 changing mode of /tmp/pip-build-env-1cg3_hya/overlay/bin/cythonize to 755 2022-08-05T22:21:32,914 Successfully installed Cython-0.29.32 glypy-1.0.7 hjson-3.0.2 setuptools-63.4.1 six-1.16.0 wheel-0.37.1 2022-08-05T22:21:33,116 --- Logging error --- 2022-08-05T22:21:33,134 Traceback (most recent call last): 2022-08-05T22:21:33,134 File "/tmp/pip-standalone-pip-p8llwst3/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-08-05T22:21:33,135 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-08-05T22:21:33,135 File "/tmp/pip-standalone-pip-p8llwst3/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-08-05T22:21:33,135 extend(render(renderable, render_options)) 2022-08-05T22:21:33,136 File "/tmp/pip-standalone-pip-p8llwst3/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-08-05T22:21:33,136 for render_output in iter_render: 2022-08-05T22:21:33,137 File "/tmp/pip-standalone-pip-p8llwst3/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-08-05T22:21:33,137 for line in lines: 2022-08-05T22:21:33,137 File "/tmp/pip-standalone-pip-p8llwst3/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-08-05T22:21:33,137 for segment in segments: 2022-08-05T22:21:33,138 File "/tmp/pip-standalone-pip-p8llwst3/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-08-05T22:21:33,138 renderable = rich_cast(renderable) 2022-08-05T22:21:33,138 File "/tmp/pip-standalone-pip-p8llwst3/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-08-05T22:21:33,139 renderable = cast_method() 2022-08-05T22:21:33,139 File "/tmp/pip-standalone-pip-p8llwst3/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-08-05T22:21:33,139 pip_cmd = get_best_invocation_for_this_pip() 2022-08-05T22:21:33,140 File "/tmp/pip-standalone-pip-p8llwst3/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip 2022-08-05T22:21:33,140 if found_executable and os.path.samefile( 2022-08-05T22:21:33,140 File "/usr/lib/python3.9/genericpath.py", line 101, in samefile 2022-08-05T22:21:33,140 s2 = os.stat(f2) 2022-08-05T22:21:33,141 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9' 2022-08-05T22:21:33,141 Call stack: 2022-08-05T22:21:33,145 File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main 2022-08-05T22:21:33,146 return _run_code(code, main_globals, None, 2022-08-05T22:21:33,146 File "/usr/lib/python3.9/runpy.py", line 87, in _run_code 2022-08-05T22:21:33,146 exec(code, run_globals) 2022-08-05T22:21:33,147 File "/tmp/pip-standalone-pip-p8llwst3/__env_pip__.zip/pip/__main__.py", line 31, in 2022-08-05T22:21:33,147 sys.exit(_main()) 2022-08-05T22:21:33,147 File "/tmp/pip-standalone-pip-p8llwst3/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-08-05T22:21:33,148 return command.main(cmd_args) 2022-08-05T22:21:33,148 File "/tmp/pip-standalone-pip-p8llwst3/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-08-05T22:21:33,148 return self._main(args) 2022-08-05T22:21:33,149 File "/tmp/pip-standalone-pip-p8llwst3/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-08-05T22:21:33,149 self.handle_pip_version_check(options) 2022-08-05T22:21:33,149 File "/tmp/pip-standalone-pip-p8llwst3/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-08-05T22:21:33,150 pip_self_version_check(session, options) 2022-08-05T22:21:33,150 File "/tmp/pip-standalone-pip-p8llwst3/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-08-05T22:21:33,150 logger.info("[present-rich] %s", upgrade_prompt) 2022-08-05T22:21:33,150 File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info 2022-08-05T22:21:33,151 self._log(INFO, msg, args, **kwargs) 2022-08-05T22:21:33,151 File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log 2022-08-05T22:21:33,151 self.handle(record) 2022-08-05T22:21:33,152 File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle 2022-08-05T22:21:33,152 self.callHandlers(record) 2022-08-05T22:21:33,152 File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers 2022-08-05T22:21:33,152 hdlr.handle(record) 2022-08-05T22:21:33,153 File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle 2022-08-05T22:21:33,153 self.emit(record) 2022-08-05T22:21:33,153 File "/tmp/pip-standalone-pip-p8llwst3/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-08-05T22:21:33,154 self.handleError(record) 2022-08-05T22:21:33,154 Message: '[present-rich] %s' 2022-08-05T22:21:33,154 Arguments: (UpgradePrompt(old='22.1.2', new='22.2.1'),) 2022-08-05T22:21:33,754 Installing build dependencies: finished with status 'done' 2022-08-05T22:21:33,802 Getting requirements to build wheel: started 2022-08-05T22:21:33,804 Running command Getting requirements to build wheel 2022-08-05T22:21:39,609 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zw6a5_ed/glycopeptidepy_12870c5c713e4677884bcd34dc223a21/glycopeptidepy/_c/structure/base.pxd 2022-08-05T22:21:39,610 tree = Parsing.p_module(s, pxd, full_module_name) 2022-08-05T22:21:42,255 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zw6a5_ed/glycopeptidepy_12870c5c713e4677884bcd34dc223a21/glycopeptidepy/_c/structure/fragment.pxd 2022-08-05T22:21:42,255 tree = Parsing.p_module(s, pxd, full_module_name) 2022-08-05T22:21:48,269 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zw6a5_ed/glycopeptidepy_12870c5c713e4677884bcd34dc223a21/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd 2022-08-05T22:21:48,269 tree = Parsing.p_module(s, pxd, full_module_name) 2022-08-05T22:21:50,833 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zw6a5_ed/glycopeptidepy_12870c5c713e4677884bcd34dc223a21/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd 2022-08-05T22:21:50,834 tree = Parsing.p_module(s, pxd, full_module_name) 2022-08-05T22:21:54,642 warning: glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx:1034:8: local variable 'total_core_count' referenced before assignment 2022-08-05T22:21:56,935 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zw6a5_ed/glycopeptidepy_12870c5c713e4677884bcd34dc223a21/glycopeptidepy/_c/structure/modification/rule.pxd 2022-08-05T22:21:56,935 tree = Parsing.p_module(s, pxd, full_module_name) 2022-08-05T22:21:58,467 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zw6a5_ed/glycopeptidepy_12870c5c713e4677884bcd34dc223a21/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd 2022-08-05T22:21:58,467 tree = Parsing.p_module(s, pxd, full_module_name) 2022-08-05T22:22:03,571 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zw6a5_ed/glycopeptidepy_12870c5c713e4677884bcd34dc223a21/glycopeptidepy/_c/structure/glycan.pxd 2022-08-05T22:22:03,571 tree = Parsing.p_module(s, pxd, full_module_name) 2022-08-05T22:22:06,259 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zw6a5_ed/glycopeptidepy_12870c5c713e4677884bcd34dc223a21/glycopeptidepy/_c/structure/modification/modification.pxd 2022-08-05T22:22:06,260 tree = Parsing.p_module(s, pxd, full_module_name) 2022-08-05T22:22:07,203 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zw6a5_ed/glycopeptidepy_12870c5c713e4677884bcd34dc223a21/glycopeptidepy/_c/structure/modification/source.pxd 2022-08-05T22:22:07,204 tree = Parsing.p_module(s, pxd, full_module_name) 2022-08-05T22:22:08,316 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zw6a5_ed/glycopeptidepy_12870c5c713e4677884bcd34dc223a21/glycopeptidepy/_c/structure/sequence_methods.pxd 2022-08-05T22:22:08,316 tree = Parsing.p_module(s, pxd, full_module_name) 2022-08-05T22:22:12,385 Compiling glycopeptidepy/_c/structure/base.pyx because it depends on /tmp/pip-build-env-1cg3_hya/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2022-08-05T22:22:12,385 Compiling glycopeptidepy/_c/structure/fragment.pyx because it depends on /tmp/pip-build-env-1cg3_hya/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2022-08-05T22:22:12,386 Compiling glycopeptidepy/_c/structure/glycan.pyx because it depends on /tmp/pip-build-env-1cg3_hya/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-08-05T22:22:12,386 Compiling glycopeptidepy/_c/structure/sequence_methods.pyx because it depends on /tmp/pip-build-env-1cg3_hya/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-08-05T22:22:12,386 Compiling glycopeptidepy/_c/structure/modification/rule.pyx because it depends on /tmp/pip-build-env-1cg3_hya/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-08-05T22:22:12,387 Compiling glycopeptidepy/_c/structure/modification/modification.pyx because it depends on /tmp/pip-build-env-1cg3_hya/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-08-05T22:22:12,387 Compiling glycopeptidepy/_c/structure/modification/source.pyx because it depends on /tmp/pip-build-env-1cg3_hya/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-08-05T22:22:12,388 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it depends on /tmp/pip-build-env-1cg3_hya/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2022-08-05T22:22:12,388 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it depends on /tmp/pip-build-env-1cg3_hya/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-08-05T22:22:12,388 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it depends on /tmp/pip-build-env-1cg3_hya/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2022-08-05T22:22:12,389 [ 1/10] Cythonizing glycopeptidepy/_c/structure/base.pyx 2022-08-05T22:22:12,389 [ 2/10] Cythonizing glycopeptidepy/_c/structure/fragment.pyx 2022-08-05T22:22:12,389 [ 3/10] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx 2022-08-05T22:22:12,390 [ 4/10] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx 2022-08-05T22:22:12,390 [ 5/10] Cythonizing glycopeptidepy/_c/structure/modification/rule.pyx 2022-08-05T22:22:12,390 [ 6/10] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx 2022-08-05T22:22:12,391 [ 7/10] Cythonizing glycopeptidepy/_c/structure/glycan.pyx 2022-08-05T22:22:12,391 [ 8/10] Cythonizing glycopeptidepy/_c/structure/modification/modification.pyx 2022-08-05T22:22:12,391 [ 9/10] Cythonizing glycopeptidepy/_c/structure/modification/source.pyx 2022-08-05T22:22:12,391 [10/10] Cythonizing glycopeptidepy/_c/structure/sequence_methods.pyx 2022-08-05T22:22:17,413 running egg_info 2022-08-05T22:22:18,030 writing glycopeptidepy.egg-info/PKG-INFO 2022-08-05T22:22:18,602 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2022-08-05T22:22:21,477 writing requirements to glycopeptidepy.egg-info/requires.txt 2022-08-05T22:22:22,045 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2022-08-05T22:22:22,796 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2022-08-05T22:22:22,810 reading manifest template 'MANIFEST.in' 2022-08-05T22:22:22,812 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2022-08-05T22:22:22,813 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2022-08-05T22:22:23,244 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2022-08-05T22:22:23,721 Getting requirements to build wheel: finished with status 'done' 2022-08-05T22:22:23,747 Created temporary directory: /tmp/pip-modern-metadata-5h3mxmxx 2022-08-05T22:22:23,752 Preparing metadata (pyproject.toml): started 2022-08-05T22:22:23,754 Running command Preparing metadata (pyproject.toml) 2022-08-05T22:22:32,683 running dist_info 2022-08-05T22:22:33,305 creating /tmp/pip-modern-metadata-5h3mxmxx/glycopeptidepy.egg-info 2022-08-05T22:22:33,898 writing /tmp/pip-modern-metadata-5h3mxmxx/glycopeptidepy.egg-info/PKG-INFO 2022-08-05T22:22:34,462 writing dependency_links to /tmp/pip-modern-metadata-5h3mxmxx/glycopeptidepy.egg-info/dependency_links.txt 2022-08-05T22:22:37,255 writing requirements to /tmp/pip-modern-metadata-5h3mxmxx/glycopeptidepy.egg-info/requires.txt 2022-08-05T22:22:37,813 writing top-level names to /tmp/pip-modern-metadata-5h3mxmxx/glycopeptidepy.egg-info/top_level.txt 2022-08-05T22:22:37,816 writing manifest file '/tmp/pip-modern-metadata-5h3mxmxx/glycopeptidepy.egg-info/SOURCES.txt' 2022-08-05T22:22:38,544 reading manifest file '/tmp/pip-modern-metadata-5h3mxmxx/glycopeptidepy.egg-info/SOURCES.txt' 2022-08-05T22:22:38,547 reading manifest template 'MANIFEST.in' 2022-08-05T22:22:38,548 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2022-08-05T22:22:38,549 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2022-08-05T22:22:38,987 writing manifest file '/tmp/pip-modern-metadata-5h3mxmxx/glycopeptidepy.egg-info/SOURCES.txt' 2022-08-05T22:22:38,991 creating '/tmp/pip-modern-metadata-5h3mxmxx/glycopeptidepy-0.0.19.dist-info' 2022-08-05T22:22:39,507 Preparing metadata (pyproject.toml): finished with status 'done' 2022-08-05T22:22:39,521 Source in /tmp/pip-wheel-zw6a5_ed/glycopeptidepy_12870c5c713e4677884bcd34dc223a21 has version 0.0.19, which satisfies requirement glycopeptidepy==0.0.19 from https://files.pythonhosted.org/packages/70/95/943022113c136108e428626e06b6b0b54cc09255558ca5be29d71c92ecc8/glycopeptidepy-0.0.19.tar.gz#sha256=5df0545ae05bb65cd7c219836523cee40e06734751e25362b41d8efd32e618a6 2022-08-05T22:22:39,523 Removed glycopeptidepy==0.0.19 from https://files.pythonhosted.org/packages/70/95/943022113c136108e428626e06b6b0b54cc09255558ca5be29d71c92ecc8/glycopeptidepy-0.0.19.tar.gz#sha256=5df0545ae05bb65cd7c219836523cee40e06734751e25362b41d8efd32e618a6 from build tracker '/tmp/pip-build-tracker-65jepog_' 2022-08-05T22:22:39,532 Created temporary directory: /tmp/pip-unpack-vpcax0fx 2022-08-05T22:22:39,533 Building wheels for collected packages: glycopeptidepy 2022-08-05T22:22:39,544 Created temporary directory: /tmp/pip-wheel-i7ei5n7b 2022-08-05T22:22:39,545 Destination directory: /tmp/pip-wheel-i7ei5n7b 2022-08-05T22:22:39,550 Building wheel for glycopeptidepy (pyproject.toml): started 2022-08-05T22:22:39,552 Running command Building wheel for glycopeptidepy (pyproject.toml) 2022-08-05T22:22:48,102 running bdist_wheel 2022-08-05T22:22:48,205 running build 2022-08-05T22:22:48,206 running build_py 2022-08-05T22:22:48,810 creating build 2022-08-05T22:22:48,810 creating build/lib.linux-armv7l-cpython-39 2022-08-05T22:22:48,811 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy 2022-08-05T22:22:48,813 copying glycopeptidepy/algorithm.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2022-08-05T22:22:48,818 copying glycopeptidepy/enzyme.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2022-08-05T22:22:48,822 copying glycopeptidepy/version.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2022-08-05T22:22:48,828 copying glycopeptidepy/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2022-08-05T22:22:48,833 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-08-05T22:22:48,834 copying glycopeptidepy/io/mzid.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-08-05T22:22:48,838 copying glycopeptidepy/io/fasta.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-08-05T22:22:48,843 copying glycopeptidepy/io/nextprot.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-08-05T22:22:48,847 copying glycopeptidepy/io/utils.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-08-05T22:22:48,850 copying glycopeptidepy/io/uniprot.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-08-05T22:22:48,855 copying glycopeptidepy/io/annotation.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-08-05T22:22:48,859 copying glycopeptidepy/io/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-08-05T22:22:48,864 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-08-05T22:22:48,866 copying glycopeptidepy/structure/composition.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-08-05T22:22:48,870 copying glycopeptidepy/structure/base.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-08-05T22:22:48,874 copying glycopeptidepy/structure/fragment.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-08-05T22:22:48,879 copying glycopeptidepy/structure/constants.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-08-05T22:22:48,883 copying glycopeptidepy/structure/sequence_composition.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-08-05T22:22:48,888 copying glycopeptidepy/structure/terminal_group.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-08-05T22:22:48,891 copying glycopeptidepy/structure/residue.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-08-05T22:22:48,896 copying glycopeptidepy/structure/glycan.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-08-05T22:22:48,901 copying glycopeptidepy/structure/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-08-05T22:22:48,905 copying glycopeptidepy/structure/parser.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-08-05T22:22:48,912 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-08-05T22:22:48,914 copying glycopeptidepy/test/test_fasta.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-08-05T22:22:48,918 copying glycopeptidepy/test/test_algorithms.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-08-05T22:22:48,921 copying glycopeptidepy/test/test_sequence.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-08-05T22:22:48,925 copying glycopeptidepy/test/test_uniprot.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-08-05T22:22:48,928 copying glycopeptidepy/test/test_modification.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-08-05T22:22:48,932 copying glycopeptidepy/test/test_fragmentation_strategy.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-08-05T22:22:48,936 copying glycopeptidepy/test/test_sequence_composition.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-08-05T22:22:48,939 copying glycopeptidepy/test/test_residue.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-08-05T22:22:48,942 copying glycopeptidepy/test/common.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-08-05T22:22:48,945 copying glycopeptidepy/test/test_fragment.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-08-05T22:22:48,948 copying glycopeptidepy/test/test_utils.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-08-05T22:22:48,951 copying glycopeptidepy/test/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-08-05T22:22:48,954 copying glycopeptidepy/test/test_enzyme.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-08-05T22:22:48,957 copying glycopeptidepy/test/test_intervals.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-08-05T22:22:48,962 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-08-05T22:22:48,964 copying glycopeptidepy/_c/cythonize.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-08-05T22:22:48,968 copying glycopeptidepy/_c/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-08-05T22:22:48,972 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-08-05T22:22:48,974 copying glycopeptidepy/utils/iterators.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-08-05T22:22:48,978 copying glycopeptidepy/utils/collectiontools.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-08-05T22:22:48,982 copying glycopeptidepy/utils/intervals.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-08-05T22:22:48,987 copying glycopeptidepy/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-08-05T22:22:48,991 copying glycopeptidepy/utils/memoize.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-08-05T22:22:48,994 copying glycopeptidepy/utils/sequence_tree.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-08-05T22:22:49,000 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2022-08-05T22:22:49,002 copying glycopeptidepy/io/cv/peff.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2022-08-05T22:22:49,007 copying glycopeptidepy/io/cv/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2022-08-05T22:22:49,010 copying glycopeptidepy/io/cv/term.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2022-08-05T22:22:49,015 copying glycopeptidepy/io/cv/uniprot_ptm.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2022-08-05T22:22:49,020 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-08-05T22:22:49,022 copying glycopeptidepy/structure/modification/target.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-08-05T22:22:49,027 copying glycopeptidepy/structure/modification/rule.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-08-05T22:22:49,033 copying glycopeptidepy/structure/modification/descriptors.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-08-05T22:22:49,037 copying glycopeptidepy/structure/modification/source.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-08-05T22:22:49,042 copying glycopeptidepy/structure/modification/modification.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-08-05T22:22:49,046 copying glycopeptidepy/structure/modification/glycosylation.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-08-05T22:22:49,051 copying glycopeptidepy/structure/modification/utils.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-08-05T22:22:49,055 copying glycopeptidepy/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-08-05T22:22:49,060 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2022-08-05T22:22:49,062 copying glycopeptidepy/structure/fragmentation_strategy/base.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2022-08-05T22:22:49,066 copying glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2022-08-05T22:22:49,073 copying glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2022-08-05T22:22:49,077 copying glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2022-08-05T22:22:49,083 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2022-08-05T22:22:49,085 copying glycopeptidepy/structure/sequence/implementation.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2022-08-05T22:22:49,090 copying glycopeptidepy/structure/sequence/mutable_sequence.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2022-08-05T22:22:49,094 copying glycopeptidepy/structure/sequence/base.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2022-08-05T22:22:49,099 copying glycopeptidepy/structure/sequence/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2022-08-05T22:22:49,103 copying glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2022-08-05T22:22:49,109 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2022-08-05T22:22:49,110 copying glycopeptidepy/structure/modification/data/unimod.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2022-08-05T22:22:49,117 copying glycopeptidepy/structure/modification/data/patch_unimod.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2022-08-05T22:22:49,120 copying glycopeptidepy/structure/modification/data/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2022-08-05T22:22:49,125 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-08-05T22:22:49,127 copying glycopeptidepy/_c/structure/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-08-05T22:22:49,131 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-08-05T22:22:49,133 copying glycopeptidepy/_c/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-08-05T22:22:49,137 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:22:49,139 copying glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:22:49,142 running egg_info 2022-08-05T22:22:50,364 writing glycopeptidepy.egg-info/PKG-INFO 2022-08-05T22:22:50,931 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2022-08-05T22:22:53,752 writing requirements to glycopeptidepy.egg-info/requires.txt 2022-08-05T22:22:54,317 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2022-08-05T22:22:54,387 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2022-08-05T22:22:54,398 reading manifest template 'MANIFEST.in' 2022-08-05T22:22:54,399 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2022-08-05T22:22:54,401 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2022-08-05T22:22:54,818 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2022-08-05T22:22:54,838 copying glycopeptidepy/_c/algorithm.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-08-05T22:22:54,869 copying glycopeptidepy/_c/algorithm.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-08-05T22:22:54,873 copying glycopeptidepy/_c/collectiontools.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-08-05T22:22:54,893 copying glycopeptidepy/_c/collectiontools.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-08-05T22:22:54,897 copying glycopeptidepy/_c/collectiontools.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-08-05T22:22:54,900 copying glycopeptidepy/_c/compat.h -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-08-05T22:22:54,904 copying glycopeptidepy/_c/compat.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-08-05T22:22:54,907 copying glycopeptidepy/_c/count_table.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-08-05T22:22:54,952 copying glycopeptidepy/_c/count_table.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-08-05T22:22:54,956 copying glycopeptidepy/_c/count_table.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-08-05T22:22:54,962 copying glycopeptidepy/_c/parser.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-08-05T22:22:54,988 copying glycopeptidepy/_c/parser.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-08-05T22:22:54,991 copying glycopeptidepy/_c/parser.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-08-05T22:22:54,997 copying glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2022-08-05T22:22:55,000 copying glycopeptidepy/structure/modification/data/unimod.json -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2022-08-05T22:22:55,086 copying glycopeptidepy/_c/structure/base.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-08-05T22:22:55,131 copying glycopeptidepy/_c/structure/base.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-08-05T22:22:55,135 copying glycopeptidepy/_c/structure/base.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-08-05T22:22:55,140 copying glycopeptidepy/_c/structure/constants.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-08-05T22:22:55,160 copying glycopeptidepy/_c/structure/constants.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-08-05T22:22:55,164 copying glycopeptidepy/_c/structure/constants.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-08-05T22:22:55,168 copying glycopeptidepy/_c/structure/fragment.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-08-05T22:22:55,241 copying glycopeptidepy/_c/structure/fragment.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-08-05T22:22:55,245 copying glycopeptidepy/_c/structure/fragment.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-08-05T22:22:55,250 copying glycopeptidepy/_c/structure/glycan.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-08-05T22:22:55,297 copying glycopeptidepy/_c/structure/glycan.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-08-05T22:22:55,300 copying glycopeptidepy/_c/structure/glycan.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-08-05T22:22:55,305 copying glycopeptidepy/_c/structure/sequence_methods.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-08-05T22:22:55,353 copying glycopeptidepy/_c/structure/sequence_methods.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-08-05T22:22:55,357 copying glycopeptidepy/_c/structure/sequence_methods.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-08-05T22:22:55,363 copying glycopeptidepy/_c/structure/modification/modification.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-08-05T22:22:55,390 copying glycopeptidepy/_c/structure/modification/modification.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-08-05T22:22:55,393 copying glycopeptidepy/_c/structure/modification/modification.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-08-05T22:22:55,398 copying glycopeptidepy/_c/structure/modification/rule.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-08-05T22:22:55,435 copying glycopeptidepy/_c/structure/modification/rule.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-08-05T22:22:55,439 copying glycopeptidepy/_c/structure/modification/rule.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-08-05T22:22:55,443 copying glycopeptidepy/_c/structure/modification/source.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-08-05T22:22:55,471 copying glycopeptidepy/_c/structure/modification/source.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-08-05T22:22:55,475 copying glycopeptidepy/_c/structure/modification/source.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-08-05T22:22:55,479 copying glycopeptidepy/_c/structure/modification/target.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-08-05T22:22:55,483 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:22:55,506 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:22:55,509 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:22:55,513 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:22:55,585 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:22:55,589 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:22:55,596 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:22:55,655 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:22:55,659 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:22:55,683 running build_ext 2022-08-05T22:22:55,697 building 'glycopeptidepy._c.collectiontools' extension 2022-08-05T22:22:55,698 creating build/temp.linux-armv7l-cpython-39 2022-08-05T22:22:55,698 creating build/temp.linux-armv7l-cpython-39/glycopeptidepy 2022-08-05T22:22:55,700 creating build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-08-05T22:22:55,701 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/collectiontools.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.o 2022-08-05T22:23:04,903 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.cpython-39-arm-linux-gnueabihf.so 2022-08-05T22:23:05,169 building 'glycopeptidepy._c.count_table' extension 2022-08-05T22:23:05,170 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/count_table.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.o 2022-08-05T22:23:07,313 glycopeptidepy/_c/count_table.c:2441:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist’ defined but not used [-Wunused-function] 2022-08-05T22:23:07,314 2441 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist(size_t __pyx_v_n, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_inst) { 2022-08-05T22:23:07,314 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-08-05T22:23:07,316 glycopeptidepy/_c/count_table.c:2183:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get’ defined but not used [-Wunused-function] 2022-08-05T22:23:07,316 2183 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2022-08-05T22:23:07,316 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-08-05T22:23:07,318 glycopeptidepy/_c/count_table.c:1953:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put’ defined but not used [-Wunused-function] 2022-08-05T22:23:07,318 1953 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2022-08-05T22:23:07,318 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-08-05T22:23:25,468 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.cpython-39-arm-linux-gnueabihf.so 2022-08-05T22:23:25,772 building 'glycopeptidepy._c.parser' extension 2022-08-05T22:23:25,774 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I./glycopeptidepy/_c -I/usr/include/python3.9 -c glycopeptidepy/_c/parser.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.o 2022-08-05T22:23:26,498 In file included from glycopeptidepy/_c/parser.c:765: 2022-08-05T22:23:26,498 glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2022-08-05T22:23:26,499 38 | #define PyInt_Check PyLong_Check 2022-08-05T22:23:26,499 | 2022-08-05T22:23:26,505 glycopeptidepy/_c/parser.c:672: note: this is the location of the previous definition 2022-08-05T22:23:26,505 672 | #define PyInt_Check(op) PyLong_Check(op) 2022-08-05T22:23:26,506 | 2022-08-05T22:23:26,506 In file included from glycopeptidepy/_c/parser.c:765: 2022-08-05T22:23:26,507 glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2022-08-05T22:23:26,507 39 | #define PyInt_CheckExact PyLong_CheckExact 2022-08-05T22:23:26,507 | 2022-08-05T22:23:26,508 glycopeptidepy/_c/parser.c:673: note: this is the location of the previous definition 2022-08-05T22:23:26,508 673 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2022-08-05T22:23:26,508 | 2022-08-05T22:23:26,532 glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser__cstring_sequence_tokenizer’: 2022-08-05T22:23:26,535 glycopeptidepy/_c/parser.c:2006:21: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-08-05T22:23:26,535 2006 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2022-08-05T22:23:26,536 | ^ 2022-08-05T22:23:26,604 glycopeptidepy/_c/parser.c: In function ‘__pyx_fuse_1__pyx_f_14glycopeptidepy_2_c_6parser__sequence_tokenizer’: 2022-08-05T22:23:26,610 glycopeptidepy/_c/parser.c:4496:66: warning: self-comparison always evaluates to true [-Wtautological-compare] 2022-08-05T22:23:26,610 4496 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 295, __pyx_L1_error) 2022-08-05T22:23:26,611 | ^~ 2022-08-05T22:23:26,628 glycopeptidepy/_c/parser.c:4923:66: warning: self-comparison always evaluates to true [-Wtautological-compare] 2022-08-05T22:23:26,628 4923 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 328, __pyx_L1_error) 2022-08-05T22:23:26,629 | ^~ 2022-08-05T22:23:26,641 glycopeptidepy/_c/parser.c:5129:64: warning: self-comparison always evaluates to true [-Wtautological-compare] 2022-08-05T22:23:26,641 5129 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 344, __pyx_L1_error) 2022-08-05T22:23:26,641 | ^~ 2022-08-05T22:23:26,669 glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser_parse_simple’: 2022-08-05T22:23:26,676 glycopeptidepy/_c/parser.c:5992:23: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-08-05T22:23:26,677 5992 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2022-08-05T22:23:26,677 | ^ 2022-08-05T22:23:39,094 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.cpython-39-arm-linux-gnueabihf.so 2022-08-05T22:23:39,360 building 'glycopeptidepy._c.structure.base' extension 2022-08-05T22:23:39,361 creating build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-08-05T22:23:39,363 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/base.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.o 2022-08-05T22:24:08,118 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.cpython-39-arm-linux-gnueabihf.so 2022-08-05T22:24:08,468 building 'glycopeptidepy._c.structure.fragment' extension 2022-08-05T22:24:08,470 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I./glycopeptidepy/_c -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/fragment.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.o 2022-08-05T22:24:09,217 In file included from glycopeptidepy/_c/structure/fragment.c:718: 2022-08-05T22:24:09,218 ./glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2022-08-05T22:24:09,218 38 | #define PyInt_Check PyLong_Check 2022-08-05T22:24:09,219 | 2022-08-05T22:24:09,233 glycopeptidepy/_c/structure/fragment.c:624: note: this is the location of the previous definition 2022-08-05T22:24:09,233 624 | #define PyInt_Check(op) PyLong_Check(op) 2022-08-05T22:24:09,234 | 2022-08-05T22:24:09,234 In file included from glycopeptidepy/_c/structure/fragment.c:718: 2022-08-05T22:24:09,234 ./glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2022-08-05T22:24:09,235 39 | #define PyInt_CheckExact PyLong_CheckExact 2022-08-05T22:24:09,235 | 2022-08-05T22:24:09,235 glycopeptidepy/_c/structure/fragment.c:625: note: this is the location of the previous definition 2022-08-05T22:24:09,236 625 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2022-08-05T22:24:09,236 | 2022-08-05T22:24:09,291 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_init_str_ints’: 2022-08-05T22:24:09,295 glycopeptidepy/_c/structure/fragment.c:3197:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-08-05T22:24:09,296 3197 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2022-08-05T22:24:09,296 | ^ 2022-08-05T22:24:09,299 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_get_str_int’: 2022-08-05T22:24:09,303 glycopeptidepy/_c/structure/fragment.c:3426:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-08-05T22:24:09,304 3426 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2022-08-05T22:24:09,304 | ^ 2022-08-05T22:24:09,559 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_15PeptideFragment_get_fragment_name’: 2022-08-05T22:24:09,571 glycopeptidepy/_c/structure/fragment.c:10329:22: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-08-05T22:24:09,572 10329 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2022-08-05T22:24:09,572 | ^ 2022-08-05T22:24:09,594 glycopeptidepy/_c/structure/fragment.c:10644:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-08-05T22:24:09,595 10644 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2022-08-05T22:24:09,595 | ^ 2022-08-05T22:24:09,610 glycopeptidepy/_c/structure/fragment.c:10818:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-08-05T22:24:09,611 10818 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2022-08-05T22:24:09,611 | ^ 2022-08-05T22:24:09,626 glycopeptidepy/_c/structure/fragment.c:10997:24: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-08-05T22:24:09,627 10997 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2022-08-05T22:24:09,627 | ^ 2022-08-05T22:24:56,490 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.cpython-39-arm-linux-gnueabihf.so 2022-08-05T22:24:56,906 building 'glycopeptidepy._c.structure.constants' extension 2022-08-05T22:24:56,908 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/constants.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.o 2022-08-05T22:25:04,153 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.cpython-39-arm-linux-gnueabihf.so 2022-08-05T22:25:04,413 building 'glycopeptidepy._c.structure.glycan' extension 2022-08-05T22:25:04,415 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/glycan.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.o 2022-08-05T22:25:05,409 glycopeptidepy/_c/structure/glycan.c: In function ‘__pyx_fuse_0__pyx_f_14glycopeptidepy_2_c_9structure_6glycan_22GlycanCompositionProxy__create’: 2022-08-05T22:25:05,412 glycopeptidepy/_c/structure/glycan.c:2557:58: warning: self-comparison always evaluates to true [-Wtautological-compare] 2022-08-05T22:25:05,412 2557 | if (!(likely(PyString_CheckExact(Py_None))||((Py_None) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "str", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 28, __pyx_L1_error) 2022-08-05T22:25:05,413 | ^~ 2022-08-05T22:25:33,449 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.cpython-39-arm-linux-gnueabihf.so 2022-08-05T22:25:33,796 building 'glycopeptidepy._c.structure.sequence_methods' extension 2022-08-05T22:25:33,798 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/sequence_methods.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.o 2022-08-05T22:25:34,948 glycopeptidepy/_c/structure/sequence_methods.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_16sequence_methods_add_modification’: 2022-08-05T22:25:34,964 glycopeptidepy/_c/structure/sequence_methods.c:11748:37: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-08-05T22:25:34,965 11748 | __pyx_t_2 = ((__pyx_v_position_ >= ((struct __pyx_vtabstruct_14glycopeptidepy_2_c_9structure_16sequence_methods__PeptideSequenceCore *)__pyx_v_self->__pyx_base.__pyx_vtab)->get_size(__pyx_v_self)) != 0); 2022-08-05T22:25:34,965 | ^~ 2022-08-05T22:26:02,936 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.cpython-39-arm-linux-gnueabihf.so 2022-08-05T22:26:03,264 building 'glycopeptidepy._c.structure.modification.rule' extension 2022-08-05T22:26:03,266 creating build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-08-05T22:26:03,267 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/modification/rule.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.o 2022-08-05T22:26:21,472 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.cpython-39-arm-linux-gnueabihf.so 2022-08-05T22:26:21,767 building 'glycopeptidepy._c.structure.modification.modification' extension 2022-08-05T22:26:21,768 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/modification/modification.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.o 2022-08-05T22:26:31,221 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.cpython-39-arm-linux-gnueabihf.so 2022-08-05T22:26:31,483 building 'glycopeptidepy._c.structure.modification.source' extension 2022-08-05T22:26:31,484 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/modification/source.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.o 2022-08-05T22:26:41,413 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.cpython-39-arm-linux-gnueabihf.so 2022-08-05T22:26:41,681 building 'glycopeptidepy._c.structure.fragmentation_strategy.base' extension 2022-08-05T22:26:41,683 creating build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:26:41,684 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/fragmentation_strategy/base.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.o 2022-08-05T22:26:51,255 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-39-arm-linux-gnueabihf.so 2022-08-05T22:26:51,519 building 'glycopeptidepy._c.structure.fragmentation_strategy.peptide' extension 2022-08-05T22:26:51,520 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o 2022-08-05T22:27:33,395 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-39-arm-linux-gnueabihf.so 2022-08-05T22:27:33,783 building 'glycopeptidepy._c.structure.fragmentation_strategy.glycan' extension 2022-08-05T22:27:33,785 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o 2022-08-05T22:27:34,841 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_fucosylate_extended’: 2022-08-05T22:27:34,853 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:9487:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2022-08-05T22:27:34,854 9487 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2022-08-05T22:27:34,854 | ^ 2022-08-05T22:27:34,866 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:9503:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2022-08-05T22:27:34,866 9503 | for (__pyx_t_10 = 1; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2022-08-05T22:27:34,867 | ^ 2022-08-05T22:27:35,063 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_n_glycan_stub_fragments’: 2022-08-05T22:27:35,081 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:13595:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-08-05T22:27:35,082 13595 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2022-08-05T22:27:35,082 | ^ 2022-08-05T22:27:35,109 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_o_glycan_stub_fragments’: 2022-08-05T22:27:35,128 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:14219:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2022-08-05T22:27:35,129 14219 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_13; __pyx_t_7+=1) { 2022-08-05T22:27:35,129 | ^ 2022-08-05T22:27:35,157 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:13977:7: warning: variable ‘__pyx_t_15’ set but not used [-Wunused-but-set-variable] 2022-08-05T22:27:35,158 13977 | int __pyx_t_15; 2022-08-05T22:27:35,158 | ^~~~~~~~~~ 2022-08-05T22:27:35,232 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_gag_linker_stub_fragments’: 2022-08-05T22:27:35,253 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:16026:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2022-08-05T22:27:35,254 16026 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_13; __pyx_t_7+=1) { 2022-08-05T22:27:35,254 | ^ 2022-08-05T22:27:35,285 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:15784:7: warning: variable ‘__pyx_t_15’ set but not used [-Wunused-but-set-variable] 2022-08-05T22:27:35,286 15784 | int __pyx_t_15; 2022-08-05T22:27:35,286 | ^~~~~~~~~~ 2022-08-05T22:27:35,348 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_mixed_stub_fragments’: 2022-08-05T22:27:35,371 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17269:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-08-05T22:27:35,372 17269 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2022-08-05T22:27:35,372 | ^ 2022-08-05T22:27:35,396 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17327:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-08-05T22:27:35,397 17327 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2022-08-05T22:27:35,397 | ^ 2022-08-05T22:27:35,421 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17385:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-08-05T22:27:35,422 17385 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2022-08-05T22:27:35,422 | ^ 2022-08-05T22:28:21,282 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-39-arm-linux-gnueabihf.so 2022-08-05T22:28:21,689 building 'glycopeptidepy._c.algorithm' extension 2022-08-05T22:28:21,691 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/algorithm.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.o 2022-08-05T22:28:41,399 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.cpython-39-arm-linux-gnueabihf.so 2022-08-05T22:28:42,957 installing to build/bdist.linux-armv7l/wheel 2022-08-05T22:28:42,958 running install 2022-08-05T22:28:43,021 running install_lib 2022-08-05T22:28:43,625 creating build/bdist.linux-armv7l 2022-08-05T22:28:43,626 creating build/bdist.linux-armv7l/wheel 2022-08-05T22:28:43,630 creating build/bdist.linux-armv7l/wheel/glycopeptidepy 2022-08-05T22:28:43,631 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/algorithm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2022-08-05T22:28:43,637 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2022-08-05T22:28:43,643 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-08-05T22:28:43,644 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/mzid.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-08-05T22:28:43,649 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-08-05T22:28:43,655 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/nextprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-08-05T22:28:43,659 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-08-05T22:28:43,662 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-08-05T22:28:43,667 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/annotation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-08-05T22:28:43,672 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2022-08-05T22:28:43,674 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/peff.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2022-08-05T22:28:43,678 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2022-08-05T22:28:43,681 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/term.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2022-08-05T22:28:43,686 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2022-08-05T22:28:43,689 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-08-05T22:28:43,693 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-08-05T22:28:43,695 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-08-05T22:28:43,700 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-08-05T22:28:43,703 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2022-08-05T22:28:43,705 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2022-08-05T22:28:43,709 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/unimod.json -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2022-08-05T22:28:43,803 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2022-08-05T22:28:43,809 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2022-08-05T22:28:43,812 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2022-08-05T22:28:43,815 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/target.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-08-05T22:28:43,819 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/rule.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-08-05T22:28:43,824 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/descriptors.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-08-05T22:28:43,828 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/source.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-08-05T22:28:43,832 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-08-05T22:28:43,836 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/glycosylation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-08-05T22:28:43,841 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-08-05T22:28:43,844 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-08-05T22:28:43,847 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-08-05T22:28:43,852 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2022-08-05T22:28:43,853 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2022-08-05T22:28:43,857 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2022-08-05T22:28:43,863 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2022-08-05T22:28:43,867 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2022-08-05T22:28:43,873 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2022-08-05T22:28:43,874 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/implementation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2022-08-05T22:28:43,879 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2022-08-05T22:28:43,883 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2022-08-05T22:28:43,887 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2022-08-05T22:28:43,891 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2022-08-05T22:28:43,895 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-08-05T22:28:43,900 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/constants.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-08-05T22:28:43,903 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-08-05T22:28:43,908 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/terminal_group.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-08-05T22:28:43,911 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-08-05T22:28:43,916 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-08-05T22:28:43,920 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-08-05T22:28:43,924 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/parser.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-08-05T22:28:43,928 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/version.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2022-08-05T22:28:43,933 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-08-05T22:28:43,934 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-08-05T22:28:43,939 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_algorithms.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-08-05T22:28:43,942 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-08-05T22:28:43,947 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-08-05T22:28:43,950 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-08-05T22:28:43,954 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_fragmentation_strategy.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-08-05T22:28:43,958 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-08-05T22:28:43,961 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-08-05T22:28:43,964 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/common.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-08-05T22:28:43,968 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-08-05T22:28:43,971 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-08-05T22:28:43,974 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-08-05T22:28:43,977 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-08-05T22:28:43,981 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-08-05T22:28:43,984 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2022-08-05T22:28:43,989 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:43,990 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:43,994 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:43,997 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:44,001 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:44,021 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/compat.h -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:44,025 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:44,042 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:44,046 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/cythonize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:44,051 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:44,053 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:44,056 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:44,102 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:44,191 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:44,197 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-08-05T22:28:44,198 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-08-05T22:28:44,219 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-08-05T22:28:44,223 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/target.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-08-05T22:28:44,226 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-08-05T22:28:44,249 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-08-05T22:28:44,268 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-08-05T22:28:44,301 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-08-05T22:28:44,305 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-08-05T22:28:44,309 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-08-05T22:28:44,312 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-08-05T22:28:44,350 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-08-05T22:28:44,353 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-08-05T22:28:44,373 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-08-05T22:28:44,376 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-08-05T22:28:44,380 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:28:44,382 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:28:44,385 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:28:44,406 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:28:44,409 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:28:44,481 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:28:44,484 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:28:44,488 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:28:44,552 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:28:44,571 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:28:44,574 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:28:44,643 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:28:44,650 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:28:44,655 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-08-05T22:28:44,721 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:44,725 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:44,801 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:44,852 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:44,855 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:44,859 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:44,863 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:44,869 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:44,875 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:44,893 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:44,897 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:44,946 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:44,987 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:45,034 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:45,050 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:45,053 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:45,102 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-08-05T22:28:45,107 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:45,113 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:45,132 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:45,136 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:45,165 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/compat.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:45,168 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:45,199 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:45,202 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:45,205 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:45,232 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:45,255 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-08-05T22:28:45,293 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-08-05T22:28:45,295 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/iterators.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-08-05T22:28:45,298 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/collectiontools.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-08-05T22:28:45,301 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-08-05T22:28:45,306 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-08-05T22:28:45,309 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/memoize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-08-05T22:28:45,312 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/sequence_tree.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-08-05T22:28:45,316 running install_egg_info 2022-08-05T22:28:45,931 Copying glycopeptidepy.egg-info to build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.19-py3.9.egg-info 2022-08-05T22:28:45,958 running install_scripts 2022-08-05T22:28:46,148 creating build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.19.dist-info/WHEEL 2022-08-05T22:28:46,153 creating '/tmp/pip-wheel-i7ei5n7b/tmpbfig8x8k/glycopeptidepy-0.0.19-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-08-05T22:28:46,158 adding 'glycopeptidepy/__init__.py' 2022-08-05T22:28:46,163 adding 'glycopeptidepy/algorithm.py' 2022-08-05T22:28:46,167 adding 'glycopeptidepy/enzyme.py' 2022-08-05T22:28:46,170 adding 'glycopeptidepy/version.py' 2022-08-05T22:28:46,173 adding 'glycopeptidepy/_c/__init__.py' 2022-08-05T22:28:46,274 adding 'glycopeptidepy/_c/algorithm.c' 2022-08-05T22:28:46,599 adding 'glycopeptidepy/_c/algorithm.cpython-39-arm-linux-gnueabihf.so' 2022-08-05T22:28:46,615 adding 'glycopeptidepy/_c/algorithm.pyx' 2022-08-05T22:28:46,676 adding 'glycopeptidepy/_c/collectiontools.c' 2022-08-05T22:28:46,821 adding 'glycopeptidepy/_c/collectiontools.cpython-39-arm-linux-gnueabihf.so' 2022-08-05T22:28:46,828 adding 'glycopeptidepy/_c/collectiontools.pxd' 2022-08-05T22:28:46,831 adding 'glycopeptidepy/_c/collectiontools.pyx' 2022-08-05T22:28:46,834 adding 'glycopeptidepy/_c/compat.h' 2022-08-05T22:28:46,836 adding 'glycopeptidepy/_c/compat.pxd' 2022-08-05T22:28:46,954 adding 'glycopeptidepy/_c/count_table.c' 2022-08-05T22:28:47,282 adding 'glycopeptidepy/_c/count_table.cpython-39-arm-linux-gnueabihf.so' 2022-08-05T22:28:47,296 adding 'glycopeptidepy/_c/count_table.pxd' 2022-08-05T22:28:47,303 adding 'glycopeptidepy/_c/count_table.pyx' 2022-08-05T22:28:47,306 adding 'glycopeptidepy/_c/cythonize.py' 2022-08-05T22:28:47,383 adding 'glycopeptidepy/_c/parser.c' 2022-08-05T22:28:47,563 adding 'glycopeptidepy/_c/parser.cpython-39-arm-linux-gnueabihf.so' 2022-08-05T22:28:47,572 adding 'glycopeptidepy/_c/parser.pxd' 2022-08-05T22:28:47,576 adding 'glycopeptidepy/_c/parser.pyx' 2022-08-05T22:28:47,580 adding 'glycopeptidepy/_c/structure/__init__.py' 2022-08-05T22:28:47,719 adding 'glycopeptidepy/_c/structure/base.c' 2022-08-05T22:28:48,182 adding 'glycopeptidepy/_c/structure/base.cpython-39-arm-linux-gnueabihf.so' 2022-08-05T22:28:48,202 adding 'glycopeptidepy/_c/structure/base.pxd' 2022-08-05T22:28:48,206 adding 'glycopeptidepy/_c/structure/base.pyx' 2022-08-05T22:28:48,256 adding 'glycopeptidepy/_c/structure/constants.c' 2022-08-05T22:28:48,376 adding 'glycopeptidepy/_c/structure/constants.cpython-39-arm-linux-gnueabihf.so' 2022-08-05T22:28:48,382 adding 'glycopeptidepy/_c/structure/constants.pxd' 2022-08-05T22:28:48,384 adding 'glycopeptidepy/_c/structure/constants.pyx' 2022-08-05T22:28:48,603 adding 'glycopeptidepy/_c/structure/fragment.c' 2022-08-05T22:28:49,329 adding 'glycopeptidepy/_c/structure/fragment.cpython-39-arm-linux-gnueabihf.so' 2022-08-05T22:28:49,361 adding 'glycopeptidepy/_c/structure/fragment.pxd' 2022-08-05T22:28:49,368 adding 'glycopeptidepy/_c/structure/fragment.pyx' 2022-08-05T22:28:49,501 adding 'glycopeptidepy/_c/structure/glycan.c' 2022-08-05T22:28:49,964 adding 'glycopeptidepy/_c/structure/glycan.cpython-39-arm-linux-gnueabihf.so' 2022-08-05T22:28:49,984 adding 'glycopeptidepy/_c/structure/glycan.pxd' 2022-08-05T22:28:49,989 adding 'glycopeptidepy/_c/structure/glycan.pyx' 2022-08-05T22:28:50,129 adding 'glycopeptidepy/_c/structure/sequence_methods.c' 2022-08-05T22:28:50,583 adding 'glycopeptidepy/_c/structure/sequence_methods.cpython-39-arm-linux-gnueabihf.so' 2022-08-05T22:28:50,602 adding 'glycopeptidepy/_c/structure/sequence_methods.pxd' 2022-08-05T22:28:50,609 adding 'glycopeptidepy/_c/structure/sequence_methods.pyx' 2022-08-05T22:28:50,613 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py' 2022-08-05T22:28:50,680 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.c' 2022-08-05T22:28:50,837 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-39-arm-linux-gnueabihf.so' 2022-08-05T22:28:50,845 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd' 2022-08-05T22:28:50,847 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx' 2022-08-05T22:28:51,058 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c' 2022-08-05T22:28:51,750 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-39-arm-linux-gnueabihf.so' 2022-08-05T22:28:51,780 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd' 2022-08-05T22:28:51,790 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx' 2022-08-05T22:28:51,981 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c' 2022-08-05T22:28:52,613 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-39-arm-linux-gnueabihf.so' 2022-08-05T22:28:52,641 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd' 2022-08-05T22:28:52,648 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx' 2022-08-05T22:28:52,652 adding 'glycopeptidepy/_c/structure/modification/__init__.py' 2022-08-05T22:28:52,714 adding 'glycopeptidepy/_c/structure/modification/modification.c' 2022-08-05T22:28:52,871 adding 'glycopeptidepy/_c/structure/modification/modification.cpython-39-arm-linux-gnueabihf.so' 2022-08-05T22:28:52,879 adding 'glycopeptidepy/_c/structure/modification/modification.pxd' 2022-08-05T22:28:52,882 adding 'glycopeptidepy/_c/structure/modification/modification.pyx' 2022-08-05T22:28:52,977 adding 'glycopeptidepy/_c/structure/modification/rule.c' 2022-08-05T22:28:53,272 adding 'glycopeptidepy/_c/structure/modification/rule.cpython-39-arm-linux-gnueabihf.so' 2022-08-05T22:28:53,287 adding 'glycopeptidepy/_c/structure/modification/rule.pxd' 2022-08-05T22:28:53,290 adding 'glycopeptidepy/_c/structure/modification/rule.pyx' 2022-08-05T22:28:53,355 adding 'glycopeptidepy/_c/structure/modification/source.c' 2022-08-05T22:28:53,525 adding 'glycopeptidepy/_c/structure/modification/source.cpython-39-arm-linux-gnueabihf.so' 2022-08-05T22:28:53,534 adding 'glycopeptidepy/_c/structure/modification/source.pxd' 2022-08-05T22:28:53,537 adding 'glycopeptidepy/_c/structure/modification/source.pyx' 2022-08-05T22:28:53,539 adding 'glycopeptidepy/_c/structure/modification/target.pyx' 2022-08-05T22:28:53,542 adding 'glycopeptidepy/io/__init__.py' 2022-08-05T22:28:53,546 adding 'glycopeptidepy/io/annotation.py' 2022-08-05T22:28:53,555 adding 'glycopeptidepy/io/fasta.py' 2022-08-05T22:28:53,559 adding 'glycopeptidepy/io/mzid.py' 2022-08-05T22:28:53,561 adding 'glycopeptidepy/io/nextprot.py' 2022-08-05T22:28:53,567 adding 'glycopeptidepy/io/uniprot.py' 2022-08-05T22:28:53,570 adding 'glycopeptidepy/io/utils.py' 2022-08-05T22:28:53,573 adding 'glycopeptidepy/io/cv/__init__.py' 2022-08-05T22:28:53,577 adding 'glycopeptidepy/io/cv/peff.py' 2022-08-05T22:28:53,580 adding 'glycopeptidepy/io/cv/term.py' 2022-08-05T22:28:53,583 adding 'glycopeptidepy/io/cv/uniprot_ptm.py' 2022-08-05T22:28:53,587 adding 'glycopeptidepy/structure/__init__.py' 2022-08-05T22:28:53,589 adding 'glycopeptidepy/structure/base.py' 2022-08-05T22:28:53,591 adding 'glycopeptidepy/structure/composition.py' 2022-08-05T22:28:53,594 adding 'glycopeptidepy/structure/constants.py' 2022-08-05T22:28:53,600 adding 'glycopeptidepy/structure/fragment.py' 2022-08-05T22:28:53,604 adding 'glycopeptidepy/structure/glycan.py' 2022-08-05T22:28:53,608 adding 'glycopeptidepy/structure/parser.py' 2022-08-05T22:28:53,612 adding 'glycopeptidepy/structure/residue.py' 2022-08-05T22:28:53,616 adding 'glycopeptidepy/structure/sequence_composition.py' 2022-08-05T22:28:53,619 adding 'glycopeptidepy/structure/terminal_group.py' 2022-08-05T22:28:53,623 adding 'glycopeptidepy/structure/fragmentation_strategy/__init__.py' 2022-08-05T22:28:53,625 adding 'glycopeptidepy/structure/fragmentation_strategy/base.py' 2022-08-05T22:28:53,635 adding 'glycopeptidepy/structure/fragmentation_strategy/glycan.py' 2022-08-05T22:28:53,643 adding 'glycopeptidepy/structure/fragmentation_strategy/peptide.py' 2022-08-05T22:28:53,648 adding 'glycopeptidepy/structure/modification/__init__.py' 2022-08-05T22:28:53,651 adding 'glycopeptidepy/structure/modification/descriptors.py' 2022-08-05T22:28:53,656 adding 'glycopeptidepy/structure/modification/glycosylation.py' 2022-08-05T22:28:53,660 adding 'glycopeptidepy/structure/modification/modification.py' 2022-08-05T22:28:53,668 adding 'glycopeptidepy/structure/modification/rule.py' 2022-08-05T22:28:53,674 adding 'glycopeptidepy/structure/modification/source.py' 2022-08-05T22:28:53,679 adding 'glycopeptidepy/structure/modification/target.py' 2022-08-05T22:28:53,682 adding 'glycopeptidepy/structure/modification/utils.py' 2022-08-05T22:28:53,686 adding 'glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv' 2022-08-05T22:28:53,689 adding 'glycopeptidepy/structure/modification/data/__init__.py' 2022-08-05T22:28:53,692 adding 'glycopeptidepy/structure/modification/data/patch_unimod.py' 2022-08-05T22:28:53,857 adding 'glycopeptidepy/structure/modification/data/unimod.json' 2022-08-05T22:28:53,899 adding 'glycopeptidepy/structure/modification/data/unimod.py' 2022-08-05T22:28:53,904 adding 'glycopeptidepy/structure/sequence/__init__.py' 2022-08-05T22:28:53,909 adding 'glycopeptidepy/structure/sequence/base.py' 2022-08-05T22:28:53,913 adding 'glycopeptidepy/structure/sequence/glycosylated_sequence.py' 2022-08-05T22:28:53,917 adding 'glycopeptidepy/structure/sequence/implementation.py' 2022-08-05T22:28:53,921 adding 'glycopeptidepy/structure/sequence/mutable_sequence.py' 2022-08-05T22:28:53,925 adding 'glycopeptidepy/test/__init__.py' 2022-08-05T22:28:53,928 adding 'glycopeptidepy/test/common.py' 2022-08-05T22:28:53,931 adding 'glycopeptidepy/test/test_algorithms.py' 2022-08-05T22:28:53,934 adding 'glycopeptidepy/test/test_enzyme.py' 2022-08-05T22:28:53,938 adding 'glycopeptidepy/test/test_fasta.py' 2022-08-05T22:28:53,942 adding 'glycopeptidepy/test/test_fragment.py' 2022-08-05T22:28:53,945 adding 'glycopeptidepy/test/test_fragmentation_strategy.py' 2022-08-05T22:28:53,948 adding 'glycopeptidepy/test/test_intervals.py' 2022-08-05T22:28:53,951 adding 'glycopeptidepy/test/test_modification.py' 2022-08-05T22:28:53,954 adding 'glycopeptidepy/test/test_residue.py' 2022-08-05T22:28:53,959 adding 'glycopeptidepy/test/test_sequence.py' 2022-08-05T22:28:53,962 adding 'glycopeptidepy/test/test_sequence_composition.py' 2022-08-05T22:28:53,965 adding 'glycopeptidepy/test/test_uniprot.py' 2022-08-05T22:28:53,967 adding 'glycopeptidepy/test/test_utils.py' 2022-08-05T22:28:53,971 adding 'glycopeptidepy/utils/__init__.py' 2022-08-05T22:28:53,975 adding 'glycopeptidepy/utils/collectiontools.py' 2022-08-05T22:28:53,980 adding 'glycopeptidepy/utils/intervals.py' 2022-08-05T22:28:53,983 adding 'glycopeptidepy/utils/iterators.py' 2022-08-05T22:28:53,987 adding 'glycopeptidepy/utils/memoize.py' 2022-08-05T22:28:53,990 adding 'glycopeptidepy/utils/sequence_tree.py' 2022-08-05T22:28:53,994 adding 'glycopeptidepy-0.0.19.dist-info/METADATA' 2022-08-05T22:28:53,997 adding 'glycopeptidepy-0.0.19.dist-info/WHEEL' 2022-08-05T22:28:53,999 adding 'glycopeptidepy-0.0.19.dist-info/top_level.txt' 2022-08-05T22:28:54,005 adding 'glycopeptidepy-0.0.19.dist-info/RECORD' 2022-08-05T22:28:54,207 removing build/bdist.linux-armv7l/wheel 2022-08-05T22:28:54,652 Building wheel for glycopeptidepy (pyproject.toml): finished with status 'done' 2022-08-05T22:28:54,920 Created wheel for glycopeptidepy: filename=glycopeptidepy-0.0.19-cp39-cp39-linux_armv7l.whl size=5096512 sha256=eb18249fc5b46f01571989c32c22769f2509f095f541a02581546a5c5c79a4e0 2022-08-05T22:28:54,922 Stored in directory: /tmp/pip-ephem-wheel-cache-rok5tph1/wheels/e6/5e/5e/d20955bc21102ff9c1ac868441cb703a99a25ec129915a080a 2022-08-05T22:28:54,959 Successfully built glycopeptidepy 2022-08-05T22:28:55,265 Removed build tracker: '/tmp/pip-build-tracker-65jepog_'