2022-08-07T16:18:51,896 Created temporary directory: /tmp/pip-ephem-wheel-cache-h4cu_4jt 2022-08-07T16:18:51,902 Created temporary directory: /tmp/pip-build-tracker-82v5kee8 2022-08-07T16:18:51,902 Initialized build tracking at /tmp/pip-build-tracker-82v5kee8 2022-08-07T16:18:51,903 Created build tracker: /tmp/pip-build-tracker-82v5kee8 2022-08-07T16:18:51,903 Entered build tracker: /tmp/pip-build-tracker-82v5kee8 2022-08-07T16:18:51,904 Created temporary directory: /tmp/pip-wheel-ncesi20l 2022-08-07T16:18:51,978 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-07T16:18:51,988 2 location(s) to search for versions of structuregraph-helpers: 2022-08-07T16:18:51,988 * https://pypi.org/simple/structuregraph-helpers/ 2022-08-07T16:18:51,988 * https://www.piwheels.org/simple/structuregraph-helpers/ 2022-08-07T16:18:51,989 Fetching project page and analyzing links: https://pypi.org/simple/structuregraph-helpers/ 2022-08-07T16:18:51,990 Getting page https://pypi.org/simple/structuregraph-helpers/ 2022-08-07T16:18:51,993 Found index url https://pypi.org/simple 2022-08-07T16:18:52,118 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/01/c0/ef7f514effe7fca5576abc753abd6336340dfa9ee534a9521c7e6c42829d/structuregraph_helpers-0.0.1-py3-none-any.whl#sha256=5534a4d78540e21f58d31ec5b52cee8e38c836217c087910c8eaab47541dfc8b (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-07T16:18:52,120 Found link https://files.pythonhosted.org/packages/19/a6/efc4f35cda870ce9eb691a1c84fa019da6d83f2f46e659620968493dc15a/structuregraph_helpers-0.0.1.tar.gz#sha256=4ecf9d1f686686ccc0d90373dd1159c3a5fca8e8fb4a941da8cca9119d481742 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.1 2022-08-07T16:18:52,121 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/2b/27/08d4cbfb51990845488cc126c7d2b1fcc1669afc7a544eba4b1299da8c3c/structuregraph_helpers-0.0.2-py3-none-any.whl#sha256=fd3007fea665b053e3cf0a8d899844d13473c58956df03932f675158fd2e8ff6 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-07T16:18:52,122 Found link https://files.pythonhosted.org/packages/6d/e7/a1c928f29f3b8946a670e480e4367cd3b7fe226565e6d68508754cf7a4ca/structuregraph_helpers-0.0.2.tar.gz#sha256=6e19f28faf763044e8bf13b8cb2984dfcc20122bdd337d6fd4071521b0b0bb25 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.2 2022-08-07T16:18:52,123 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/08/8f/3992b64303a0b684282c217ad32c9f5dea17ef8a9c3d9ae86b2ac2065590/structuregraph_helpers-0.0.3-py3-none-any.whl#sha256=fb376a72410a74c3bdb29d15367c822fb285e38ae1c61ab4763d712582a4c138 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-07T16:18:52,124 Found link https://files.pythonhosted.org/packages/9b/52/93f84e96204724f84c9bd1fd2b17a74e33da267ec9071c329d1470cf1a61/structuregraph_helpers-0.0.3.tar.gz#sha256=dd9e996a1872c6c494fe527faf38cbb3630b01c5efeccacbb49f27443119b08a (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.3 2022-08-07T16:18:52,125 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/79/ca/8bee7a6c5ddb8e07134ef0bd5c58f42126567b6249a659c365aeeed47dfe/structuregraph_helpers-0.0.4-py3-none-any.whl#sha256=464a767857c10c2629dfb8f818e580c2a7164a55b540e08b12697f4441e85514 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-07T16:18:52,126 Found link https://files.pythonhosted.org/packages/c9/92/22d06cb7b4f5db2e5d82bb9f83fcdb8a9240ead77b6a1b67aea1c1b31b3f/structuregraph_helpers-0.0.4.tar.gz#sha256=8b21a4cf58de1920715ee4ffaf2933ac0a808b7a495382ec9e7020a82b7b74f6 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.4 2022-08-07T16:18:52,127 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/10/f4/6161d3b18c7b1d45bf77feaebd04e13b71037e456b3bb7f8dfaa22cbd615/structuregraph_helpers-0.0.5-py3-none-any.whl#sha256=bdeb9df129b79d2d5365a514a4dfc3886fad1dfcb7ead7d15606f20d4503baf8 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-07T16:18:52,128 Found link https://files.pythonhosted.org/packages/f9/23/f971acfac7f00b63230f00a8da56c7d1c2e971037e3d18722df1bec66990/structuregraph_helpers-0.0.5.tar.gz#sha256=3f0613cf2014b28f514d6910f1f98a6d9b9fb20179074ca7b56df52a7ea69d34 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.5 2022-08-07T16:18:52,129 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/e1/6e/45323d2e6f23eecabc687e121462ccabb9a0a9c2c8a54791accae01ca785/structuregraph_helpers-0.0.6-py3-none-any.whl#sha256=c3d3956c70138e1f468cfc0af6ca0360bc4748b108d793827e7e081fe5d1e007 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-07T16:18:52,130 Found link https://files.pythonhosted.org/packages/f9/97/5db1d476190262fe28cb639c441ae76cbd224f8cd9e0fb23901e215f2494/structuregraph_helpers-0.0.6.tar.gz#sha256=11f2973443130b436a53791c9dc4c9b9458a6c83b61ae9b2e2045dd091d884a7 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.6 2022-08-07T16:18:52,131 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/b4/06/e3aa5722724ab9642722a2e2655649aeee5442e0b767ecf210f2962d082b/structuregraph_helpers-0.0.7-py3-none-any.whl#sha256=2793897752a6a148b30717505a46f3fc9b9003e31d01b52a77c3117769156d28 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-07T16:18:52,132 Found link https://files.pythonhosted.org/packages/6f/92/1ec985339c0891473460f0048e1968c1cc91f958f273d2f0b6a979c6178c/structuregraph_helpers-0.0.7.tar.gz#sha256=70fd38b354d463a7b68e9db63f8c0327a58ae8a0440b7b2bc52e45a7adb2c0be (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.7 2022-08-07T16:18:52,133 Skipping link: No binaries permitted for structuregraph-helpers: https://files.pythonhosted.org/packages/00/01/808639c4926198e07fa1671225091c935f1d1e8b5583dede7acdb556bc4b/structuregraph_helpers-0.0.8-py3-none-any.whl#sha256=2914ee3cb0ccc154813615006e36ae950a3be22a89e4d5b3d69a2099643282d9 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-07T16:18:52,134 Found link https://files.pythonhosted.org/packages/08/6c/b91e0892071252325a3216c225f7c7c936f069e852891071e7312620fcd6/structuregraph_helpers-0.0.8.tar.gz#sha256=0a55aa89290d027a2077a93a6132ce4561a70f07285b01c8644575c23cd69463 (from https://pypi.org/simple/structuregraph-helpers/) (requires-python:>=3.8), version: 0.0.8 2022-08-07T16:18:52,135 Fetching project page and analyzing links: https://www.piwheels.org/simple/structuregraph-helpers/ 2022-08-07T16:18:52,136 Getting page https://www.piwheels.org/simple/structuregraph-helpers/ 2022-08-07T16:18:52,138 Found index url https://www.piwheels.org/simple 2022-08-07T16:18:52,352 Skipping link: No binaries permitted for structuregraph-helpers: https://www.piwheels.org/simple/structuregraph-helpers/structuregraph_helpers-0.0.7-py3-none-any.whl#sha256=13561ece0c60a9689e9a44f6c879b93947f4a50374d5facaae4ed959adccd992 (from https://www.piwheels.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-07T16:18:52,352 Skipping link: No binaries permitted for structuregraph-helpers: https://www.piwheels.org/simple/structuregraph-helpers/structuregraph_helpers-0.0.6-py3-none-any.whl#sha256=af38198289fa75bf9cdb538cb5c764f457869c0c95b368d6cd6f09b2271c3084 (from https://www.piwheels.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-07T16:18:52,353 Skipping link: No binaries permitted for structuregraph-helpers: https://www.piwheels.org/simple/structuregraph-helpers/structuregraph_helpers-0.0.5-py3-none-any.whl#sha256=5ce5669d24ba789399370f56c9e79d952d2cb259965d88bfea56ef1ce60962f6 (from https://www.piwheels.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-07T16:18:52,353 Skipping link: No binaries permitted for structuregraph-helpers: https://www.piwheels.org/simple/structuregraph-helpers/structuregraph_helpers-0.0.4-py3-none-any.whl#sha256=aac66180026a322c4934b020cadfe2d70f58f63fee20de28af218e1dc3be1118 (from https://www.piwheels.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-07T16:18:52,354 Skipping link: No binaries permitted for structuregraph-helpers: https://www.piwheels.org/simple/structuregraph-helpers/structuregraph_helpers-0.0.3-py3-none-any.whl#sha256=52128c96011a76af29b07b1dcd3a8ccdec17b45d75b9612453fc63e7b679c6ed (from https://www.piwheels.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-07T16:18:52,354 Skipping link: No binaries permitted for structuregraph-helpers: https://www.piwheels.org/simple/structuregraph-helpers/structuregraph_helpers-0.0.2-py3-none-any.whl#sha256=5f3d4a20eb1f96524faab0fc32f6fdd8b35219a86fed7a35eaebcb9c53b381d8 (from https://www.piwheels.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-07T16:18:52,355 Skipping link: No binaries permitted for structuregraph-helpers: https://www.piwheels.org/simple/structuregraph-helpers/structuregraph_helpers-0.0.1-py3-none-any.whl#sha256=1c71e483a87e57887da2b6d2743b669d8f5fbeef78aac71164eb26ba7c7e22f2 (from https://www.piwheels.org/simple/structuregraph-helpers/) (requires-python:>=3.8) 2022-08-07T16:18:52,355 Skipping link: not a file: https://www.piwheels.org/simple/structuregraph-helpers/ 2022-08-07T16:18:52,356 Skipping link: not a file: https://pypi.org/simple/structuregraph-helpers/ 2022-08-07T16:18:52,403 Given no hashes to check 1 links for project 'structuregraph-helpers': discarding no candidates 2022-08-07T16:18:52,446 Collecting structuregraph-helpers==0.0.8 2022-08-07T16:18:52,450 Created temporary directory: /tmp/pip-unpack-xg0_nzeh 2022-08-07T16:18:52,812 Downloading structuregraph_helpers-0.0.8.tar.gz (94 kB) 2022-08-07T16:18:53,157 Added structuregraph-helpers==0.0.8 from https://files.pythonhosted.org/packages/08/6c/b91e0892071252325a3216c225f7c7c936f069e852891071e7312620fcd6/structuregraph_helpers-0.0.8.tar.gz#sha256=0a55aa89290d027a2077a93a6132ce4561a70f07285b01c8644575c23cd69463 to build tracker '/tmp/pip-build-tracker-82v5kee8' 2022-08-07T16:18:53,165 Created temporary directory: /tmp/pip-build-env-2uk3rxpd 2022-08-07T16:18:53,186 Created temporary directory: /tmp/pip-standalone-pip-fasskvka 2022-08-07T16:18:55,535 Installing build dependencies: started 2022-08-07T16:18:55,538 Running command pip subprocess to install build dependencies 2022-08-07T16:19:06,941 Using pip 22.1.2 from /tmp/pip-standalone-pip-fasskvka/__env_pip__.zip/pip (python 3.9) 2022-08-07T16:19:08,600 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-07T16:19:12,773 Collecting setuptools>=35.0.2 2022-08-07T16:19:13,053 Using cached https://www.piwheels.org/simple/setuptools/setuptools-63.4.2-py3-none-any.whl (1.2 MB) 2022-08-07T16:19:20,626 Installing collected packages: setuptools 2022-08-07T16:19:26,010 Successfully installed setuptools-63.4.2 2022-08-07T16:19:26,209 --- Logging error --- 2022-08-07T16:19:26,226 Traceback (most recent call last): 2022-08-07T16:19:26,227 File "/tmp/pip-standalone-pip-fasskvka/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-08-07T16:19:26,227 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-08-07T16:19:26,227 File "/tmp/pip-standalone-pip-fasskvka/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-08-07T16:19:26,228 extend(render(renderable, render_options)) 2022-08-07T16:19:26,228 File "/tmp/pip-standalone-pip-fasskvka/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-08-07T16:19:26,229 for render_output in iter_render: 2022-08-07T16:19:26,229 File "/tmp/pip-standalone-pip-fasskvka/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-08-07T16:19:26,229 for line in lines: 2022-08-07T16:19:26,230 File "/tmp/pip-standalone-pip-fasskvka/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-08-07T16:19:26,230 for segment in segments: 2022-08-07T16:19:26,231 File "/tmp/pip-standalone-pip-fasskvka/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-08-07T16:19:26,231 renderable = rich_cast(renderable) 2022-08-07T16:19:26,231 File "/tmp/pip-standalone-pip-fasskvka/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-08-07T16:19:26,232 renderable = cast_method() 2022-08-07T16:19:26,232 File "/tmp/pip-standalone-pip-fasskvka/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-08-07T16:19:26,232 pip_cmd = get_best_invocation_for_this_pip() 2022-08-07T16:19:26,233 File "/tmp/pip-standalone-pip-fasskvka/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip 2022-08-07T16:19:26,233 if found_executable and os.path.samefile( 2022-08-07T16:19:26,234 File "/usr/lib/python3.9/genericpath.py", line 101, in samefile 2022-08-07T16:19:26,235 s2 = os.stat(f2) 2022-08-07T16:19:26,235 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9' 2022-08-07T16:19:26,235 Call stack: 2022-08-07T16:19:26,244 File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main 2022-08-07T16:19:26,245 return _run_code(code, main_globals, None, 2022-08-07T16:19:26,245 File "/usr/lib/python3.9/runpy.py", line 87, in _run_code 2022-08-07T16:19:26,245 exec(code, run_globals) 2022-08-07T16:19:26,246 File "/tmp/pip-standalone-pip-fasskvka/__env_pip__.zip/pip/__main__.py", line 31, in 2022-08-07T16:19:26,246 sys.exit(_main()) 2022-08-07T16:19:26,246 File "/tmp/pip-standalone-pip-fasskvka/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-08-07T16:19:26,246 return command.main(cmd_args) 2022-08-07T16:19:26,247 File "/tmp/pip-standalone-pip-fasskvka/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-08-07T16:19:26,247 return self._main(args) 2022-08-07T16:19:26,248 File "/tmp/pip-standalone-pip-fasskvka/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-08-07T16:19:26,248 self.handle_pip_version_check(options) 2022-08-07T16:19:26,248 File "/tmp/pip-standalone-pip-fasskvka/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-08-07T16:19:26,249 pip_self_version_check(session, options) 2022-08-07T16:19:26,249 File "/tmp/pip-standalone-pip-fasskvka/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-08-07T16:19:26,249 logger.info("[present-rich] %s", upgrade_prompt) 2022-08-07T16:19:26,250 File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info 2022-08-07T16:19:26,250 self._log(INFO, msg, args, **kwargs) 2022-08-07T16:19:26,250 File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log 2022-08-07T16:19:26,250 self.handle(record) 2022-08-07T16:19:26,251 File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle 2022-08-07T16:19:26,251 self.callHandlers(record) 2022-08-07T16:19:26,251 File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers 2022-08-07T16:19:26,252 hdlr.handle(record) 2022-08-07T16:19:26,252 File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle 2022-08-07T16:19:26,252 self.emit(record) 2022-08-07T16:19:26,252 File "/tmp/pip-standalone-pip-fasskvka/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-08-07T16:19:26,253 self.handleError(record) 2022-08-07T16:19:26,253 Message: '[present-rich] %s' 2022-08-07T16:19:26,253 Arguments: (UpgradePrompt(old='22.1.2', new='22.2.1'),) 2022-08-07T16:19:26,760 Installing build dependencies: finished with status 'done' 2022-08-07T16:19:26,789 Getting requirements to build wheel: started 2022-08-07T16:19:26,791 Running command Getting requirements to build wheel 2022-08-07T16:19:28,752 /usr/local/lib/python3.9/dist-packages/setuptools/config/setupcfg.py:459: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-08-07T16:19:28,753 warnings.warn(msg, warning_class) 2022-08-07T16:19:31,494 running egg_info 2022-08-07T16:19:32,100 writing src/structuregraph_helpers.egg-info/PKG-INFO 2022-08-07T16:19:32,673 writing dependency_links to src/structuregraph_helpers.egg-info/dependency_links.txt 2022-08-07T16:19:34,375 writing entry points to src/structuregraph_helpers.egg-info/entry_points.txt 2022-08-07T16:19:35,512 writing requirements to src/structuregraph_helpers.egg-info/requires.txt 2022-08-07T16:19:36,081 writing top-level names to src/structuregraph_helpers.egg-info/top_level.txt 2022-08-07T16:19:36,760 reading manifest file 'src/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-07T16:19:36,775 reading manifest template 'MANIFEST.in' 2022-08-07T16:19:36,786 no previously-included directories found matching 'scripts' 2022-08-07T16:19:36,787 no previously-included directories found matching 'notebooks' 2022-08-07T16:19:36,801 warning: no files found matching '*.png' under directory 'docs/source' 2022-08-07T16:19:36,803 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2022-08-07T16:19:36,805 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2022-08-07T16:19:36,806 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-08-07T16:19:36,808 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2022-08-07T16:19:36,809 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2022-08-07T16:19:36,810 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2022-08-07T16:19:36,812 warning: no previously-included files found matching 'tox.ini' 2022-08-07T16:19:36,813 warning: no previously-included files found matching '.flake8' 2022-08-07T16:19:36,814 warning: no previously-included files found matching '.bumpversion.cfg' 2022-08-07T16:19:36,815 warning: no previously-included files found matching '.readthedocs.yml' 2022-08-07T16:19:36,816 warning: no previously-included files found matching 'CONTRIBUTING.rst' 2022-08-07T16:19:36,816 adding license file 'LICENSE' 2022-08-07T16:19:36,826 writing manifest file 'src/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-07T16:19:37,032 Getting requirements to build wheel: finished with status 'done' 2022-08-07T16:19:37,058 Created temporary directory: /tmp/pip-standalone-pip-ustoz7mp 2022-08-07T16:19:39,385 Installing backend dependencies: started 2022-08-07T16:19:39,388 Running command pip subprocess to install backend dependencies 2022-08-07T16:19:50,459 Using pip 22.1.2 from /tmp/pip-standalone-pip-ustoz7mp/__env_pip__.zip/pip (python 3.9) 2022-08-07T16:19:52,135 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-07T16:19:53,021 Collecting wheel 2022-08-07T16:19:53,055 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-08-07T16:19:59,642 Installing collected packages: wheel 2022-08-07T16:19:59,930 Creating /tmp/pip-build-env-2uk3rxpd/normal/bin 2022-08-07T16:19:59,934 changing mode of /tmp/pip-build-env-2uk3rxpd/normal/bin/wheel to 755 2022-08-07T16:19:59,961 Successfully installed wheel-0.37.1 2022-08-07T16:20:00,157 --- Logging error --- 2022-08-07T16:20:00,172 Traceback (most recent call last): 2022-08-07T16:20:00,173 File "/tmp/pip-standalone-pip-ustoz7mp/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-08-07T16:20:00,173 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-08-07T16:20:00,173 File "/tmp/pip-standalone-pip-ustoz7mp/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-08-07T16:20:00,174 extend(render(renderable, render_options)) 2022-08-07T16:20:00,174 File "/tmp/pip-standalone-pip-ustoz7mp/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-08-07T16:20:00,175 for render_output in iter_render: 2022-08-07T16:20:00,175 File "/tmp/pip-standalone-pip-ustoz7mp/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-08-07T16:20:00,175 for line in lines: 2022-08-07T16:20:00,176 File "/tmp/pip-standalone-pip-ustoz7mp/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-08-07T16:20:00,176 for segment in segments: 2022-08-07T16:20:00,176 File "/tmp/pip-standalone-pip-ustoz7mp/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-08-07T16:20:00,176 renderable = rich_cast(renderable) 2022-08-07T16:20:00,177 File "/tmp/pip-standalone-pip-ustoz7mp/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-08-07T16:20:00,177 renderable = cast_method() 2022-08-07T16:20:00,178 File "/tmp/pip-standalone-pip-ustoz7mp/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-08-07T16:20:00,178 pip_cmd = get_best_invocation_for_this_pip() 2022-08-07T16:20:00,179 File "/tmp/pip-standalone-pip-ustoz7mp/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip 2022-08-07T16:20:00,179 if found_executable and os.path.samefile( 2022-08-07T16:20:00,179 File "/usr/lib/python3.9/genericpath.py", line 101, in samefile 2022-08-07T16:20:00,180 s2 = os.stat(f2) 2022-08-07T16:20:00,180 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9' 2022-08-07T16:20:00,181 Call stack: 2022-08-07T16:20:00,184 File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main 2022-08-07T16:20:00,184 return _run_code(code, main_globals, None, 2022-08-07T16:20:00,185 File "/usr/lib/python3.9/runpy.py", line 87, in _run_code 2022-08-07T16:20:00,185 exec(code, run_globals) 2022-08-07T16:20:00,186 File "/tmp/pip-standalone-pip-ustoz7mp/__env_pip__.zip/pip/__main__.py", line 31, in 2022-08-07T16:20:00,186 sys.exit(_main()) 2022-08-07T16:20:00,187 File "/tmp/pip-standalone-pip-ustoz7mp/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-08-07T16:20:00,188 return command.main(cmd_args) 2022-08-07T16:20:00,188 File "/tmp/pip-standalone-pip-ustoz7mp/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-08-07T16:20:00,189 return self._main(args) 2022-08-07T16:20:00,189 File "/tmp/pip-standalone-pip-ustoz7mp/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-08-07T16:20:00,189 self.handle_pip_version_check(options) 2022-08-07T16:20:00,190 File "/tmp/pip-standalone-pip-ustoz7mp/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-08-07T16:20:00,190 pip_self_version_check(session, options) 2022-08-07T16:20:00,190 File "/tmp/pip-standalone-pip-ustoz7mp/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-08-07T16:20:00,191 logger.info("[present-rich] %s", upgrade_prompt) 2022-08-07T16:20:00,191 File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info 2022-08-07T16:20:00,191 self._log(INFO, msg, args, **kwargs) 2022-08-07T16:20:00,191 File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log 2022-08-07T16:20:00,192 self.handle(record) 2022-08-07T16:20:00,192 File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle 2022-08-07T16:20:00,192 self.callHandlers(record) 2022-08-07T16:20:00,193 File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers 2022-08-07T16:20:00,193 hdlr.handle(record) 2022-08-07T16:20:00,193 File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle 2022-08-07T16:20:00,194 self.emit(record) 2022-08-07T16:20:00,194 File "/tmp/pip-standalone-pip-ustoz7mp/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-08-07T16:20:00,194 self.handleError(record) 2022-08-07T16:20:00,195 Message: '[present-rich] %s' 2022-08-07T16:20:00,195 Arguments: (UpgradePrompt(old='22.1.2', new='22.2.1'),) 2022-08-07T16:20:00,635 Installing backend dependencies: finished with status 'done' 2022-08-07T16:20:00,657 Created temporary directory: /tmp/pip-modern-metadata-w3ysrwut 2022-08-07T16:20:00,663 Preparing metadata (pyproject.toml): started 2022-08-07T16:20:00,665 Running command Preparing metadata (pyproject.toml) 2022-08-07T16:20:04,381 /usr/local/lib/python3.9/dist-packages/setuptools/config/setupcfg.py:459: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-08-07T16:20:04,382 warnings.warn(msg, warning_class) 2022-08-07T16:20:05,043 running dist_info 2022-08-07T16:20:05,663 creating /tmp/pip-modern-metadata-w3ysrwut/structuregraph_helpers.egg-info 2022-08-07T16:20:06,253 writing /tmp/pip-modern-metadata-w3ysrwut/structuregraph_helpers.egg-info/PKG-INFO 2022-08-07T16:20:06,817 writing dependency_links to /tmp/pip-modern-metadata-w3ysrwut/structuregraph_helpers.egg-info/dependency_links.txt 2022-08-07T16:20:08,492 writing entry points to /tmp/pip-modern-metadata-w3ysrwut/structuregraph_helpers.egg-info/entry_points.txt 2022-08-07T16:20:09,610 writing requirements to /tmp/pip-modern-metadata-w3ysrwut/structuregraph_helpers.egg-info/requires.txt 2022-08-07T16:20:10,168 writing top-level names to /tmp/pip-modern-metadata-w3ysrwut/structuregraph_helpers.egg-info/top_level.txt 2022-08-07T16:20:10,170 writing manifest file '/tmp/pip-modern-metadata-w3ysrwut/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-07T16:20:10,840 reading manifest file '/tmp/pip-modern-metadata-w3ysrwut/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-07T16:20:10,843 reading manifest template 'MANIFEST.in' 2022-08-07T16:20:10,860 no previously-included directories found matching 'scripts' 2022-08-07T16:20:10,861 no previously-included directories found matching 'notebooks' 2022-08-07T16:20:10,877 warning: no files found matching '*.png' under directory 'docs/source' 2022-08-07T16:20:10,878 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2022-08-07T16:20:10,879 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2022-08-07T16:20:10,881 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-08-07T16:20:10,882 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2022-08-07T16:20:10,883 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2022-08-07T16:20:10,884 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2022-08-07T16:20:10,886 warning: no previously-included files found matching 'tox.ini' 2022-08-07T16:20:10,887 warning: no previously-included files found matching '.flake8' 2022-08-07T16:20:10,888 warning: no previously-included files found matching '.bumpversion.cfg' 2022-08-07T16:20:10,889 warning: no previously-included files found matching '.readthedocs.yml' 2022-08-07T16:20:10,890 warning: no previously-included files found matching 'CONTRIBUTING.rst' 2022-08-07T16:20:10,890 adding license file 'LICENSE' 2022-08-07T16:20:10,898 writing manifest file '/tmp/pip-modern-metadata-w3ysrwut/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-07T16:20:10,901 creating '/tmp/pip-modern-metadata-w3ysrwut/structuregraph_helpers-0.0.8.dist-info' 2022-08-07T16:20:11,386 Preparing metadata (pyproject.toml): finished with status 'done' 2022-08-07T16:20:11,403 Source in /tmp/pip-wheel-ncesi20l/structuregraph-helpers_75d9b6eabb904b4eb38b1f1a867fc323 has version 0.0.8, which satisfies requirement structuregraph-helpers==0.0.8 from https://files.pythonhosted.org/packages/08/6c/b91e0892071252325a3216c225f7c7c936f069e852891071e7312620fcd6/structuregraph_helpers-0.0.8.tar.gz#sha256=0a55aa89290d027a2077a93a6132ce4561a70f07285b01c8644575c23cd69463 2022-08-07T16:20:11,405 Removed structuregraph-helpers==0.0.8 from https://files.pythonhosted.org/packages/08/6c/b91e0892071252325a3216c225f7c7c936f069e852891071e7312620fcd6/structuregraph_helpers-0.0.8.tar.gz#sha256=0a55aa89290d027a2077a93a6132ce4561a70f07285b01c8644575c23cd69463 from build tracker '/tmp/pip-build-tracker-82v5kee8' 2022-08-07T16:20:11,421 Created temporary directory: /tmp/pip-unpack-u1q93nnv 2022-08-07T16:20:11,422 Building wheels for collected packages: structuregraph-helpers 2022-08-07T16:20:11,432 Created temporary directory: /tmp/pip-wheel-q8gmpl2x 2022-08-07T16:20:11,432 Destination directory: /tmp/pip-wheel-q8gmpl2x 2022-08-07T16:20:11,437 Building wheel for structuregraph-helpers (pyproject.toml): started 2022-08-07T16:20:11,439 Running command Building wheel for structuregraph-helpers (pyproject.toml) 2022-08-07T16:20:15,157 /usr/local/lib/python3.9/dist-packages/setuptools/config/setupcfg.py:459: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-08-07T16:20:15,159 warnings.warn(msg, warning_class) 2022-08-07T16:20:15,365 running bdist_wheel 2022-08-07T16:20:16,528 running build 2022-08-07T16:20:16,529 running build_py 2022-08-07T16:20:17,128 creating build 2022-08-07T16:20:17,130 creating build/lib 2022-08-07T16:20:17,131 creating build/lib/structuregraph_helpers 2022-08-07T16:20:17,132 copying src/structuregraph_helpers/plotting.py -> build/lib/structuregraph_helpers 2022-08-07T16:20:17,136 copying src/structuregraph_helpers/delete.py -> build/lib/structuregraph_helpers 2022-08-07T16:20:17,140 copying src/structuregraph_helpers/cli.py -> build/lib/structuregraph_helpers 2022-08-07T16:20:17,143 copying src/structuregraph_helpers/_hasher.py -> build/lib/structuregraph_helpers 2022-08-07T16:20:17,148 copying src/structuregraph_helpers/utils.py -> build/lib/structuregraph_helpers 2022-08-07T16:20:17,151 copying src/structuregraph_helpers/version.py -> build/lib/structuregraph_helpers 2022-08-07T16:20:17,155 copying src/structuregraph_helpers/create.py -> build/lib/structuregraph_helpers 2022-08-07T16:20:17,159 copying src/structuregraph_helpers/subgraph.py -> build/lib/structuregraph_helpers 2022-08-07T16:20:17,163 copying src/structuregraph_helpers/__init__.py -> build/lib/structuregraph_helpers 2022-08-07T16:20:17,166 copying src/structuregraph_helpers/hash.py -> build/lib/structuregraph_helpers 2022-08-07T16:20:17,170 copying src/structuregraph_helpers/analysis.py -> build/lib/structuregraph_helpers 2022-08-07T16:20:17,173 running egg_info 2022-08-07T16:20:18,388 writing src/structuregraph_helpers.egg-info/PKG-INFO 2022-08-07T16:20:18,995 writing dependency_links to src/structuregraph_helpers.egg-info/dependency_links.txt 2022-08-07T16:20:20,668 writing entry points to src/structuregraph_helpers.egg-info/entry_points.txt 2022-08-07T16:20:21,789 writing requirements to src/structuregraph_helpers.egg-info/requires.txt 2022-08-07T16:20:22,351 writing top-level names to src/structuregraph_helpers.egg-info/top_level.txt 2022-08-07T16:20:22,392 reading manifest file 'src/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-07T16:20:22,400 reading manifest template 'MANIFEST.in' 2022-08-07T16:20:22,410 no previously-included directories found matching 'scripts' 2022-08-07T16:20:22,412 no previously-included directories found matching 'notebooks' 2022-08-07T16:20:22,427 warning: no files found matching '*.png' under directory 'docs/source' 2022-08-07T16:20:22,429 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2022-08-07T16:20:22,431 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2022-08-07T16:20:22,433 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-08-07T16:20:22,435 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2022-08-07T16:20:22,437 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2022-08-07T16:20:22,439 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2022-08-07T16:20:22,441 warning: no previously-included files found matching 'tox.ini' 2022-08-07T16:20:22,443 warning: no previously-included files found matching '.flake8' 2022-08-07T16:20:22,444 warning: no previously-included files found matching '.bumpversion.cfg' 2022-08-07T16:20:22,446 warning: no previously-included files found matching '.readthedocs.yml' 2022-08-07T16:20:22,447 warning: no previously-included files found matching 'CONTRIBUTING.rst' 2022-08-07T16:20:22,448 adding license file 'LICENSE' 2022-08-07T16:20:22,458 writing manifest file 'src/structuregraph_helpers.egg-info/SOURCES.txt' 2022-08-07T16:20:22,464 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-07T16:20:22,465 ############################ 2022-08-07T16:20:22,465 # Package would be ignored # 2022-08-07T16:20:22,466 ############################ 2022-08-07T16:20:22,466 Python recognizes 'structuregraph_helpers.data' as an importable package, however it is 2022-08-07T16:20:22,466 included in the distribution as "data". 2022-08-07T16:20:22,467 This behavior is likely to change in future versions of setuptools (and 2022-08-07T16:20:22,467 therefore is considered deprecated). 2022-08-07T16:20:22,468 Please make sure that 'structuregraph_helpers.data' is included as a package by using 2022-08-07T16:20:22,468 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-07T16:20:22,468 You can read more about "package discovery" and "data files" on setuptools 2022-08-07T16:20:22,469 documentation page. 2022-08-07T16:20:22,469 !! 2022-08-07T16:20:22,470 check.warn(importable) 2022-08-07T16:20:22,473 creating build/lib/structuregraph_helpers/data 2022-08-07T16:20:22,476 copying src/structuregraph_helpers/data/atom_typing_radii.yml -> build/lib/structuregraph_helpers/data 2022-08-07T16:20:22,486 copying src/structuregraph_helpers/data/li_radii.yml -> build/lib/structuregraph_helpers/data 2022-08-07T16:20:22,507 copying src/structuregraph_helpers/data/tuned_vesta.yml -> build/lib/structuregraph_helpers/data 2022-08-07T16:20:23,711 installing to build/bdist.linux-armv7l/wheel 2022-08-07T16:20:23,712 running install 2022-08-07T16:20:23,774 running install_lib 2022-08-07T16:20:24,373 creating build/bdist.linux-armv7l 2022-08-07T16:20:24,375 creating build/bdist.linux-armv7l/wheel 2022-08-07T16:20:24,379 creating build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-07T16:20:24,381 copying build/lib/structuregraph_helpers/plotting.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-07T16:20:24,386 copying build/lib/structuregraph_helpers/delete.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-07T16:20:24,391 copying build/lib/structuregraph_helpers/cli.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-07T16:20:24,395 copying build/lib/structuregraph_helpers/_hasher.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-07T16:20:24,401 copying build/lib/structuregraph_helpers/utils.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-07T16:20:24,405 copying build/lib/structuregraph_helpers/version.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-07T16:20:24,409 copying build/lib/structuregraph_helpers/create.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-07T16:20:24,414 copying build/lib/structuregraph_helpers/subgraph.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-07T16:20:24,420 creating build/bdist.linux-armv7l/wheel/structuregraph_helpers/data 2022-08-07T16:20:24,423 copying build/lib/structuregraph_helpers/data/tuned_vesta.yml -> build/bdist.linux-armv7l/wheel/structuregraph_helpers/data 2022-08-07T16:20:24,430 copying build/lib/structuregraph_helpers/data/li_radii.yml -> build/bdist.linux-armv7l/wheel/structuregraph_helpers/data 2022-08-07T16:20:24,449 copying build/lib/structuregraph_helpers/data/atom_typing_radii.yml -> build/bdist.linux-armv7l/wheel/structuregraph_helpers/data 2022-08-07T16:20:24,460 copying build/lib/structuregraph_helpers/__init__.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-07T16:20:24,464 copying build/lib/structuregraph_helpers/hash.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-07T16:20:24,468 copying build/lib/structuregraph_helpers/analysis.py -> build/bdist.linux-armv7l/wheel/structuregraph_helpers 2022-08-07T16:20:24,472 running install_egg_info 2022-08-07T16:20:25,078 Copying src/structuregraph_helpers.egg-info to build/bdist.linux-armv7l/wheel/structuregraph_helpers-0.0.8-py3.9.egg-info 2022-08-07T16:20:25,108 running install_scripts 2022-08-07T16:20:25,332 creating build/bdist.linux-armv7l/wheel/structuregraph_helpers-0.0.8.dist-info/WHEEL 2022-08-07T16:20:25,337 creating '/tmp/pip-wheel-q8gmpl2x/tmpha2aov2t/structuregraph_helpers-0.0.8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-08-07T16:20:25,343 adding 'structuregraph_helpers/__init__.py' 2022-08-07T16:20:25,349 adding 'structuregraph_helpers/_hasher.py' 2022-08-07T16:20:25,352 adding 'structuregraph_helpers/analysis.py' 2022-08-07T16:20:25,356 adding 'structuregraph_helpers/cli.py' 2022-08-07T16:20:25,360 adding 'structuregraph_helpers/create.py' 2022-08-07T16:20:25,363 adding 'structuregraph_helpers/delete.py' 2022-08-07T16:20:25,367 adding 'structuregraph_helpers/hash.py' 2022-08-07T16:20:25,370 adding 'structuregraph_helpers/plotting.py' 2022-08-07T16:20:25,375 adding 'structuregraph_helpers/subgraph.py' 2022-08-07T16:20:25,378 adding 'structuregraph_helpers/utils.py' 2022-08-07T16:20:25,381 adding 'structuregraph_helpers/version.py' 2022-08-07T16:20:25,412 adding 'structuregraph_helpers/data/atom_typing_radii.yml' 2022-08-07T16:20:25,472 adding 'structuregraph_helpers/data/li_radii.yml' 2022-08-07T16:20:25,487 adding 'structuregraph_helpers/data/tuned_vesta.yml' 2022-08-07T16:20:25,493 adding 'structuregraph_helpers-0.0.8.dist-info/LICENSE' 2022-08-07T16:20:25,497 adding 'structuregraph_helpers-0.0.8.dist-info/METADATA' 2022-08-07T16:20:25,499 adding 'structuregraph_helpers-0.0.8.dist-info/WHEEL' 2022-08-07T16:20:25,502 adding 'structuregraph_helpers-0.0.8.dist-info/entry_points.txt' 2022-08-07T16:20:25,504 adding 'structuregraph_helpers-0.0.8.dist-info/top_level.txt' 2022-08-07T16:20:25,507 adding 'structuregraph_helpers-0.0.8.dist-info/RECORD' 2022-08-07T16:20:25,512 removing build/bdist.linux-armv7l/wheel 2022-08-07T16:20:25,780 Building wheel for structuregraph-helpers (pyproject.toml): finished with status 'done' 2022-08-07T16:20:25,796 Created wheel for structuregraph-helpers: filename=structuregraph_helpers-0.0.8-py3-none-any.whl size=71687 sha256=365de13a7fa65eb0652ce5a9c1253992571bc7e95d41bb22ab1118d0c3b3ded8 2022-08-07T16:20:25,799 Stored in directory: /tmp/pip-ephem-wheel-cache-h4cu_4jt/wheels/d7/20/57/b107279cafa5cc020259c01212e84191baaf95084daa8f625e 2022-08-07T16:20:25,826 Successfully built structuregraph-helpers 2022-08-07T16:20:25,840 Removed build tracker: '/tmp/pip-build-tracker-82v5kee8'