2022-08-08T20:35:02,726 Created temporary directory: /tmp/pip-ephem-wheel-cache-0k_7snks
2022-08-08T20:35:02,731 Created temporary directory: /tmp/pip-build-tracker-58s9q_m_
2022-08-08T20:35:02,732 Initialized build tracking at /tmp/pip-build-tracker-58s9q_m_
2022-08-08T20:35:02,732 Created build tracker: /tmp/pip-build-tracker-58s9q_m_
2022-08-08T20:35:02,733 Entered build tracker: /tmp/pip-build-tracker-58s9q_m_
2022-08-08T20:35:02,734 Created temporary directory: /tmp/pip-wheel-yym5s36v
2022-08-08T20:35:02,807 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-08-08T20:35:02,815 2 location(s) to search for versions of ncbiutils:
2022-08-08T20:35:02,815 * https://pypi.org/simple/ncbiutils/
2022-08-08T20:35:02,815 * https://www.piwheels.org/simple/ncbiutils/
2022-08-08T20:35:02,816 Fetching project page and analyzing links: https://pypi.org/simple/ncbiutils/
2022-08-08T20:35:02,817 Getting page https://pypi.org/simple/ncbiutils/
2022-08-08T20:35:02,821 Found index url https://pypi.org/simple
2022-08-08T20:35:02,947   Skipping link: No binaries permitted for ncbiutils: https://files.pythonhosted.org/packages/f5/e6/109db1e243b290dec925ff1d82125db2bea12c2d29143678cf847395a538/ncbiutils-0.3.2-py3-none-any.whl#sha256=7696fea52fcfe978c070c86f89a0c52a38487e84533d29b88fa3be70d80ee71c (from https://pypi.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0)
2022-08-08T20:35:02,949   Found link https://files.pythonhosted.org/packages/32/11/65336bad43dd0feb062429e52bc3353d95946c7064c53352847b8949434d/ncbiutils-0.3.2.tar.gz#sha256=7869d9be309c622688f78d3bcc67ac91fc065d52ae07d308567e0769aaaedd08 (from https://pypi.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0), version: 0.3.2
2022-08-08T20:35:02,950   Skipping link: No binaries permitted for ncbiutils: https://files.pythonhosted.org/packages/2c/9d/2ace0c67a5f88eaf509a0c69663180f7adfac0a91771f17590fca2990a7f/ncbiutils-0.3.3-py3-none-any.whl#sha256=e9cde1d5a2f28024004148b3e2f6f1d577d855b8f3bc4c7d6dfde43e135ad9aa (from https://pypi.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0)
2022-08-08T20:35:02,951   Found link https://files.pythonhosted.org/packages/2c/9d/d8aa763cdfc2db9db4e56ce23748939583d46ec536b840bdc3f6d58bab54/ncbiutils-0.3.3.tar.gz#sha256=a1906ab033d0bb5cfee1493f402408510fd861fa9b19c411f6f8dac63c096f41 (from https://pypi.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0), version: 0.3.3
2022-08-08T20:35:02,952   Skipping link: No binaries permitted for ncbiutils: https://files.pythonhosted.org/packages/02/8d/417fabcf41150bc6874a8c9d29cc9cab10d2dfa6cadb90f6a055e4399738/ncbiutils-0.4.0-py3-none-any.whl#sha256=556ee7abb2392b745a9169a5ba62ed2207bb2de92e1f2c04e945fe7e7789263f (from https://pypi.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0)
2022-08-08T20:35:02,953   Found link https://files.pythonhosted.org/packages/f5/8b/618bfa506a5d8b8945d70ded6faaa6459476665dd47f607657a070fce4e2/ncbiutils-0.4.0.tar.gz#sha256=45cf266af5315ff57bf69c407a03880b35cb0212925f80ca51f674f7f316ba1b (from https://pypi.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0), version: 0.4.0
2022-08-08T20:35:02,954   Skipping link: No binaries permitted for ncbiutils: https://files.pythonhosted.org/packages/f1/14/b97a70122500055aa86b9977b1f5a4259d41e2450957f524c69bb17f6ff0/ncbiutils-0.5.0-py3-none-any.whl#sha256=98d01748fb87a8ae90ed3c2f660e53f61639e257dda7d1b21a3335672d47d1b7 (from https://pypi.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0)
2022-08-08T20:35:02,956   Found link https://files.pythonhosted.org/packages/80/80/92392aa9a58df8f775ca5ffe707987e47b56edda0b95b993661119054df0/ncbiutils-0.5.0.tar.gz#sha256=2ed2ad6e1952770fd18fad40acfae8b091e1aaa8e247d25ab40eeaef616147d7 (from https://pypi.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0), version: 0.5.0
2022-08-08T20:35:02,956   Skipping link: No binaries permitted for ncbiutils: https://files.pythonhosted.org/packages/f5/f1/be9aec26445bfb497fc11a898fe20e1d8da9da66f6305c02c4486bc3239a/ncbiutils-0.5.1-py3-none-any.whl#sha256=1614679e264f198acb273b4e1ce131be12fdc9ad9188366ae8c65acbd321d118 (from https://pypi.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0)
2022-08-08T20:35:02,958   Found link https://files.pythonhosted.org/packages/23/d1/56ef16bbb67cc0cf7b1569f37e7e9f7bf28b142e321253668b5b91a744a7/ncbiutils-0.5.1.tar.gz#sha256=7e339bcd62554f1d9930e587212341d3d6bd31d89d4179a54235da87bc7879ae (from https://pypi.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0), version: 0.5.1
2022-08-08T20:35:02,959   Skipping link: No binaries permitted for ncbiutils: https://files.pythonhosted.org/packages/55/28/68e61765001d1ecb1306543ad1b8fcee98baa8fc5725fa526cb30b2b9d0f/ncbiutils-0.5.2-py3-none-any.whl#sha256=4c32714e07978dbeec4fe859a0d53a1fdbe78f8cdbd87ae2ae49a15df9ce13f1 (from https://pypi.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0)
2022-08-08T20:35:02,960   Found link https://files.pythonhosted.org/packages/f8/06/389de2e7754182b7c282235d1e18f42269d96c253e12781ca32db04f2375/ncbiutils-0.5.2.tar.gz#sha256=8cb010be381e81af0c355af96e302840ba5c66318e6314586e668df1db2f8c5e (from https://pypi.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0), version: 0.5.2
2022-08-08T20:35:02,961   Skipping link: No binaries permitted for ncbiutils: https://files.pythonhosted.org/packages/80/51/e0508fddf81de4932ca837f339f60c3bb53280d9d9b6666925d57c879f04/ncbiutils-0.6.0-py3-none-any.whl#sha256=a79d14eca1ef28c527243f28bfe0be5e4646bb767a4696df8b439de5bd2c09e2 (from https://pypi.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0)
2022-08-08T20:35:02,963   Found link https://files.pythonhosted.org/packages/cc/6a/61ceeb58c8ae4f3e81b1634e5b449948783d74fe59fb2ee687723b9e0270/ncbiutils-0.6.0.tar.gz#sha256=daa8d0d1bd6f352b4a55b9ba92e80882d786e331811ea2849b564b411350627f (from https://pypi.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0), version: 0.6.0
2022-08-08T20:35:02,963   Skipping link: No binaries permitted for ncbiutils: https://files.pythonhosted.org/packages/0a/72/61904c7727867b161f0cc61a5734f7bd49deab2856d89862ab31f3d88301/ncbiutils-0.7.0-py3-none-any.whl#sha256=5e909813499ff5f82e90dd41c8b55e7b12594b63f662074f312805faf0eff96f (from https://pypi.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0)
2022-08-08T20:35:02,965   Found link https://files.pythonhosted.org/packages/68/7d/e5f072d935e3765272b34bc42ce7a4e9c6214c647cdefecc5feb5bc7c661/ncbiutils-0.7.0.tar.gz#sha256=84df5b18ce34d8d8079492af81e94ac155edf115c866a2504759daa9e6fdab44 (from https://pypi.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0), version: 0.7.0
2022-08-08T20:35:02,966 Fetching project page and analyzing links: https://www.piwheels.org/simple/ncbiutils/
2022-08-08T20:35:02,966 Getting page https://www.piwheels.org/simple/ncbiutils/
2022-08-08T20:35:02,968 Found index url https://www.piwheels.org/simple
2022-08-08T20:35:03,188   Skipping link: No binaries permitted for ncbiutils: https://www.piwheels.org/simple/ncbiutils/ncbiutils-0.6.0-py3-none-any.whl#sha256=a79d14eca1ef28c527243f28bfe0be5e4646bb767a4696df8b439de5bd2c09e2 (from https://www.piwheels.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0)
2022-08-08T20:35:03,189   Skipping link: No binaries permitted for ncbiutils: https://www.piwheels.org/simple/ncbiutils/ncbiutils-0.5.2-py3-none-any.whl#sha256=4c32714e07978dbeec4fe859a0d53a1fdbe78f8cdbd87ae2ae49a15df9ce13f1 (from https://www.piwheels.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0)
2022-08-08T20:35:03,190   Skipping link: No binaries permitted for ncbiutils: https://www.piwheels.org/simple/ncbiutils/ncbiutils-0.5.1-py3-none-any.whl#sha256=1614679e264f198acb273b4e1ce131be12fdc9ad9188366ae8c65acbd321d118 (from https://www.piwheels.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0)
2022-08-08T20:35:03,190   Skipping link: No binaries permitted for ncbiutils: https://www.piwheels.org/simple/ncbiutils/ncbiutils-0.5.0-py3-none-any.whl#sha256=98d01748fb87a8ae90ed3c2f660e53f61639e257dda7d1b21a3335672d47d1b7 (from https://www.piwheels.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0)
2022-08-08T20:35:03,190   Skipping link: No binaries permitted for ncbiutils: https://www.piwheels.org/simple/ncbiutils/ncbiutils-0.4.0-py3-none-any.whl#sha256=556ee7abb2392b745a9169a5ba62ed2207bb2de92e1f2c04e945fe7e7789263f (from https://www.piwheels.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0)
2022-08-08T20:35:03,191   Skipping link: No binaries permitted for ncbiutils: https://www.piwheels.org/simple/ncbiutils/ncbiutils-0.3.3-py3-none-any.whl#sha256=e9cde1d5a2f28024004148b3e2f6f1d577d855b8f3bc4c7d6dfde43e135ad9aa (from https://www.piwheels.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0)
2022-08-08T20:35:03,191   Skipping link: No binaries permitted for ncbiutils: https://www.piwheels.org/simple/ncbiutils/ncbiutils-0.3.2-py3-none-any.whl#sha256=b948593447d5958217eb3361eac174e21e4c22bccc5dba114093756f351a32ba (from https://www.piwheels.org/simple/ncbiutils/) (requires-python:>=3.8,<4.0)
2022-08-08T20:35:03,192 Skipping link: not a file: https://www.piwheels.org/simple/ncbiutils/
2022-08-08T20:35:03,192 Skipping link: not a file: https://pypi.org/simple/ncbiutils/
2022-08-08T20:35:03,239 Given no hashes to check 1 links for project 'ncbiutils': discarding no candidates
2022-08-08T20:35:03,280 Collecting ncbiutils==0.7.0
2022-08-08T20:35:03,284   Created temporary directory: /tmp/pip-unpack-1bbfopmy
2022-08-08T20:35:03,545   Downloading ncbiutils-0.7.0.tar.gz (14 kB)
2022-08-08T20:35:03,621   Added ncbiutils==0.7.0 from https://files.pythonhosted.org/packages/68/7d/e5f072d935e3765272b34bc42ce7a4e9c6214c647cdefecc5feb5bc7c661/ncbiutils-0.7.0.tar.gz#sha256=84df5b18ce34d8d8079492af81e94ac155edf115c866a2504759daa9e6fdab44 to build tracker '/tmp/pip-build-tracker-58s9q_m_'
2022-08-08T20:35:03,632   Created temporary directory: /tmp/pip-build-env-146mmbo7
2022-08-08T20:35:03,653   Created temporary directory: /tmp/pip-standalone-pip-bq1eac4v
2022-08-08T20:35:05,960   Installing build dependencies: started
2022-08-08T20:35:05,962   Running command pip subprocess to install build dependencies
2022-08-08T20:35:17,036   Using pip 22.1.2 from /tmp/pip-standalone-pip-bq1eac4v/__env_pip__.zip/pip (python 3.9)
2022-08-08T20:35:18,742   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-08-08T20:35:19,522   Collecting poetry-core>=1.0.0
2022-08-08T20:35:19,633     Using cached https://www.piwheels.org/simple/poetry-core/poetry_core-1.0.8-py2.py3-none-any.whl (425 kB)
2022-08-08T20:35:27,321   Installing collected packages: poetry-core
2022-08-08T20:35:30,685   Successfully installed poetry-core-1.0.8
2022-08-08T20:35:30,887   --- Logging error ---
2022-08-08T20:35:30,904   Traceback (most recent call last):
2022-08-08T20:35:30,904     File "/tmp/pip-standalone-pip-bq1eac4v/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit
2022-08-08T20:35:30,904       self.console.print(renderable, overflow="ignore", crop=False, style=style)
2022-08-08T20:35:30,905     File "/tmp/pip-standalone-pip-bq1eac4v/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print
2022-08-08T20:35:30,905       extend(render(renderable, render_options))
2022-08-08T20:35:30,906     File "/tmp/pip-standalone-pip-bq1eac4v/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render
2022-08-08T20:35:30,906       for render_output in iter_render:
2022-08-08T20:35:30,906     File "/tmp/pip-standalone-pip-bq1eac4v/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__
2022-08-08T20:35:30,907       for line in lines:
2022-08-08T20:35:30,907     File "/tmp/pip-standalone-pip-bq1eac4v/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines
2022-08-08T20:35:30,907       for segment in segments:
2022-08-08T20:35:30,908     File "/tmp/pip-standalone-pip-bq1eac4v/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render
2022-08-08T20:35:30,908       renderable = rich_cast(renderable)
2022-08-08T20:35:30,908     File "/tmp/pip-standalone-pip-bq1eac4v/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast
2022-08-08T20:35:30,909       renderable = cast_method()
2022-08-08T20:35:30,909     File "/tmp/pip-standalone-pip-bq1eac4v/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__
2022-08-08T20:35:30,909       pip_cmd = get_best_invocation_for_this_pip()
2022-08-08T20:35:30,910     File "/tmp/pip-standalone-pip-bq1eac4v/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip
2022-08-08T20:35:30,910       if found_executable and os.path.samefile(
2022-08-08T20:35:30,910     File "/usr/lib/python3.9/genericpath.py", line 101, in samefile
2022-08-08T20:35:30,911       s2 = os.stat(f2)
2022-08-08T20:35:30,911   FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9'
2022-08-08T20:35:30,911   Call stack:
2022-08-08T20:35:30,914     File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main
2022-08-08T20:35:30,915       return _run_code(code, main_globals, None,
2022-08-08T20:35:30,915     File "/usr/lib/python3.9/runpy.py", line 87, in _run_code
2022-08-08T20:35:30,916       exec(code, run_globals)
2022-08-08T20:35:30,916     File "/tmp/pip-standalone-pip-bq1eac4v/__env_pip__.zip/pip/__main__.py", line 31, in <module>
2022-08-08T20:35:30,916       sys.exit(_main())
2022-08-08T20:35:30,917     File "/tmp/pip-standalone-pip-bq1eac4v/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main
2022-08-08T20:35:30,917       return command.main(cmd_args)
2022-08-08T20:35:30,917     File "/tmp/pip-standalone-pip-bq1eac4v/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main
2022-08-08T20:35:30,917       return self._main(args)
2022-08-08T20:35:30,918     File "/tmp/pip-standalone-pip-bq1eac4v/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main
2022-08-08T20:35:30,918       self.handle_pip_version_check(options)
2022-08-08T20:35:30,918     File "/tmp/pip-standalone-pip-bq1eac4v/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check
2022-08-08T20:35:30,919       pip_self_version_check(session, options)
2022-08-08T20:35:30,919     File "/tmp/pip-standalone-pip-bq1eac4v/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check
2022-08-08T20:35:30,919       logger.info("[present-rich] %s", upgrade_prompt)
2022-08-08T20:35:30,920     File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info
2022-08-08T20:35:30,920       self._log(INFO, msg, args, **kwargs)
2022-08-08T20:35:30,920     File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log
2022-08-08T20:35:30,920       self.handle(record)
2022-08-08T20:35:30,921     File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle
2022-08-08T20:35:30,921       self.callHandlers(record)
2022-08-08T20:35:30,921     File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers
2022-08-08T20:35:30,922       hdlr.handle(record)
2022-08-08T20:35:30,922     File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle
2022-08-08T20:35:30,922       self.emit(record)
2022-08-08T20:35:30,922     File "/tmp/pip-standalone-pip-bq1eac4v/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit
2022-08-08T20:35:30,923       self.handleError(record)
2022-08-08T20:35:30,923   Message: '[present-rich] %s'
2022-08-08T20:35:30,923   Arguments: (UpgradePrompt(old='22.1.2', new='22.2.1'),)
2022-08-08T20:35:31,369   Installing build dependencies: finished with status 'done'
2022-08-08T20:35:31,397   Getting requirements to build wheel: started
2022-08-08T20:35:31,399   Running command Getting requirements to build wheel
2022-08-08T20:35:35,144   Getting requirements to build wheel: finished with status 'done'
2022-08-08T20:35:35,155   Created temporary directory: /tmp/pip-modern-metadata-2dx9gah9
2022-08-08T20:35:35,161   Preparing metadata (pyproject.toml): started
2022-08-08T20:35:35,163   Running command Preparing metadata (pyproject.toml)
2022-08-08T20:35:38,951   Preparing metadata (pyproject.toml): finished with status 'done'
2022-08-08T20:35:38,967   Source in /tmp/pip-wheel-yym5s36v/ncbiutils_5cab0ad87730467ea475cca7e2c828c6 has version 0.7.0, which satisfies requirement ncbiutils==0.7.0 from https://files.pythonhosted.org/packages/68/7d/e5f072d935e3765272b34bc42ce7a4e9c6214c647cdefecc5feb5bc7c661/ncbiutils-0.7.0.tar.gz#sha256=84df5b18ce34d8d8079492af81e94ac155edf115c866a2504759daa9e6fdab44
2022-08-08T20:35:38,969   Removed ncbiutils==0.7.0 from https://files.pythonhosted.org/packages/68/7d/e5f072d935e3765272b34bc42ce7a4e9c6214c647cdefecc5feb5bc7c661/ncbiutils-0.7.0.tar.gz#sha256=84df5b18ce34d8d8079492af81e94ac155edf115c866a2504759daa9e6fdab44 from build tracker '/tmp/pip-build-tracker-58s9q_m_'
2022-08-08T20:35:38,985 Created temporary directory: /tmp/pip-unpack-z5k3885f
2022-08-08T20:35:38,986 Building wheels for collected packages: ncbiutils
2022-08-08T20:35:38,995   Created temporary directory: /tmp/pip-wheel-qkldswbu
2022-08-08T20:35:38,996   Destination directory: /tmp/pip-wheel-qkldswbu
2022-08-08T20:35:39,001   Building wheel for ncbiutils (pyproject.toml): started
2022-08-08T20:35:39,003   Running command Building wheel for ncbiutils (pyproject.toml)
2022-08-08T20:35:42,863   Building wheel for ncbiutils (pyproject.toml): finished with status 'done'
2022-08-08T20:35:42,876   Created wheel for ncbiutils: filename=ncbiutils-0.7.0-py3-none-any.whl size=13719 sha256=5e909813499ff5f82e90dd41c8b55e7b12594b63f662074f312805faf0eff96f
2022-08-08T20:35:42,878   Stored in directory: /tmp/pip-ephem-wheel-cache-0k_7snks/wheels/e2/92/9d/b421f2184b76ee767294ddeae48dbe198473420918f4706c00
2022-08-08T20:35:42,901 Successfully built ncbiutils
2022-08-08T20:35:42,909 Removed build tracker: '/tmp/pip-build-tracker-58s9q_m_'