2022-08-08T22:00:41,577 Created temporary directory: /tmp/pip-ephem-wheel-cache-o2tgplwc 2022-08-08T22:00:41,582 Created temporary directory: /tmp/pip-build-tracker-_5pou14a 2022-08-08T22:00:41,583 Initialized build tracking at /tmp/pip-build-tracker-_5pou14a 2022-08-08T22:00:41,584 Created build tracker: /tmp/pip-build-tracker-_5pou14a 2022-08-08T22:00:41,584 Entered build tracker: /tmp/pip-build-tracker-_5pou14a 2022-08-08T22:00:41,585 Created temporary directory: /tmp/pip-wheel-0ji2vblg 2022-08-08T22:00:41,649 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-08T22:00:41,657 2 location(s) to search for versions of sequana: 2022-08-08T22:00:41,657 * https://pypi.org/simple/sequana/ 2022-08-08T22:00:41,657 * https://www.piwheels.org/simple/sequana/ 2022-08-08T22:00:41,658 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2022-08-08T22:00:41,659 Getting page https://pypi.org/simple/sequana/ 2022-08-08T22:00:41,662 Found index 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2022-08-08T22:00:42,241 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.6-py3-none-any.whl#sha256=a57d1bef0edc28a2c836768c6a4c23146b7702accb38718db86bd7b6fa9d8470 (from https://www.piwheels.org/simple/sequana/) 2022-08-08T22:00:42,242 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.5-py3-none-any.whl#sha256=a7b054c071f59f03ce6d4e5659c452cb60656f0398728417544674bcf915672f (from https://www.piwheels.org/simple/sequana/) 2022-08-08T22:00:42,242 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.9.4-py3-none-any.whl#sha256=178e6af188bbfa96b5e54a4f0d33b5c5ba607e74cbc67cf85a8aa588e629502c (from https://www.piwheels.org/simple/sequana/) 2022-08-08T22:00:42,243 Skipping link: No binaries permitted for sequana: 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2022-08-08T22:00:42,271 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.2-py3-none-any.whl#sha256=8565432ebe4263c2fd81f958a88814fd932deef7d8e488854db16600a39fc4b9 (from https://www.piwheels.org/simple/sequana/) 2022-08-08T22:00:42,272 Skipping link: not a file: https://www.piwheels.org/simple/sequana/ 2022-08-08T22:00:42,272 Skipping link: not a file: https://pypi.org/simple/sequana/ 2022-08-08T22:00:42,335 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2022-08-08T22:00:42,366 Collecting sequana==0.14.2 2022-08-08T22:00:42,371 Created temporary directory: /tmp/pip-unpack-h6klwl1_ 2022-08-08T22:00:43,128 Downloading sequana-0.14.2.tar.gz (1.5 MB) 2022-08-08T22:00:45,285 Added sequana==0.14.2 from https://files.pythonhosted.org/packages/05/c4/d113f6b8b8266e64fdbce7c645dc100e177e62b65f5de91c1ed0edd69f7c/sequana-0.14.2.tar.gz#sha256=ea8a099096b6d18550ad4a73d343cffe6d34d1f9a78e43bf2831b031c30fb974 to build tracker '/tmp/pip-build-tracker-_5pou14a' 2022-08-08T22:00:45,288 Running setup.py (path:/tmp/pip-wheel-0ji2vblg/sequana_7cf12a1ef78f4a408657d74fab61415e/setup.py) egg_info for package sequana 2022-08-08T22:00:45,289 Created temporary directory: /tmp/pip-pip-egg-info-7jeoq9e8 2022-08-08T22:00:45,290 Preparing metadata (setup.py): started 2022-08-08T22:00:45,292 Running command python setup.py egg_info 2022-08-08T22:00:55,183 running egg_info 2022-08-08T22:00:55,187 creating /tmp/pip-pip-egg-info-7jeoq9e8/sequana.egg-info 2022-08-08T22:00:55,923 writing /tmp/pip-pip-egg-info-7jeoq9e8/sequana.egg-info/PKG-INFO 2022-08-08T22:00:56,527 writing dependency_links to /tmp/pip-pip-egg-info-7jeoq9e8/sequana.egg-info/dependency_links.txt 2022-08-08T22:00:58,317 writing entry points to /tmp/pip-pip-egg-info-7jeoq9e8/sequana.egg-info/entry_points.txt 2022-08-08T22:00:59,509 writing requirements to /tmp/pip-pip-egg-info-7jeoq9e8/sequana.egg-info/requires.txt 2022-08-08T22:01:00,105 writing top-level names to /tmp/pip-pip-egg-info-7jeoq9e8/sequana.egg-info/top_level.txt 2022-08-08T22:01:00,108 writing manifest file '/tmp/pip-pip-egg-info-7jeoq9e8/sequana.egg-info/SOURCES.txt' 2022-08-08T22:01:01,743 reading manifest file '/tmp/pip-pip-egg-info-7jeoq9e8/sequana.egg-info/SOURCES.txt' 2022-08-08T22:01:01,746 reading manifest template 'MANIFEST.in' 2022-08-08T22:01:01,752 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-08-08T22:01:01,755 warning: no previously-included files matching '*pyc' found under directory '*' 2022-08-08T22:01:02,110 warning: no files found matching 'test/requirements*txt' 2022-08-08T22:01:02,114 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2022-08-08T22:01:02,116 warning: no previously-included files matching '*' found under directory 'test' 2022-08-08T22:01:02,118 warning: no previously-included files matching '*' found under directory 'doc' 2022-08-08T22:01:02,119 warning: no previously-included files found matching 'sequana/rm2.py' 2022-08-08T22:01:02,120 adding license file 'LICENSE' 2022-08-08T22:01:02,158 writing manifest file '/tmp/pip-pip-egg-info-7jeoq9e8/sequana.egg-info/SOURCES.txt' 2022-08-08T22:01:02,384 Preparing metadata (setup.py): finished with status 'done' 2022-08-08T22:01:02,396 Source in /tmp/pip-wheel-0ji2vblg/sequana_7cf12a1ef78f4a408657d74fab61415e has version 0.14.2, which satisfies requirement sequana==0.14.2 from https://files.pythonhosted.org/packages/05/c4/d113f6b8b8266e64fdbce7c645dc100e177e62b65f5de91c1ed0edd69f7c/sequana-0.14.2.tar.gz#sha256=ea8a099096b6d18550ad4a73d343cffe6d34d1f9a78e43bf2831b031c30fb974 2022-08-08T22:01:02,398 Removed sequana==0.14.2 from https://files.pythonhosted.org/packages/05/c4/d113f6b8b8266e64fdbce7c645dc100e177e62b65f5de91c1ed0edd69f7c/sequana-0.14.2.tar.gz#sha256=ea8a099096b6d18550ad4a73d343cffe6d34d1f9a78e43bf2831b031c30fb974 from build tracker '/tmp/pip-build-tracker-_5pou14a' 2022-08-08T22:01:02,409 Created temporary directory: /tmp/pip-unpack-oo2yi1pk 2022-08-08T22:01:02,410 Building wheels for collected packages: sequana 2022-08-08T22:01:02,420 Created temporary directory: /tmp/pip-wheel-dcv69lru 2022-08-08T22:01:02,421 Building wheel for sequana (setup.py): started 2022-08-08T22:01:02,423 Destination directory: /tmp/pip-wheel-dcv69lru 2022-08-08T22:01:02,423 Running command python setup.py bdist_wheel 2022-08-08T22:01:11,657 running bdist_wheel 2022-08-08T22:01:12,062 running build 2022-08-08T22:01:12,062 running build_py 2022-08-08T22:01:12,799 creating build 2022-08-08T22:01:12,800 creating build/lib 2022-08-08T22:01:12,801 creating build/lib/sequana 2022-08-08T22:01:12,803 copying sequana/databases.py -> build/lib/sequana 2022-08-08T22:01:12,809 copying sequana/cpg_islands.py -> build/lib/sequana 2022-08-08T22:01:12,812 copying sequana/mixture.py -> build/lib/sequana 2022-08-08T22:01:12,816 copying sequana/protein.py -> build/lib/sequana 2022-08-08T22:01:12,819 copying sequana/coverage.py -> build/lib/sequana 2022-08-08T22:01:12,824 copying sequana/__init__.py -> build/lib/sequana 2022-08-08T22:01:12,827 copying sequana/featurecounts.py -> build/lib/sequana 2022-08-08T22:01:12,831 copying sequana/pacbio.py -> build/lib/sequana 2022-08-08T22:01:12,837 copying sequana/sequence.py -> build/lib/sequana 2022-08-08T22:01:12,843 copying sequana/taxonomy.py -> build/lib/sequana 2022-08-08T22:01:12,848 copying sequana/tools.py -> build/lib/sequana 2022-08-08T22:01:12,852 copying sequana/macs3.py -> build/lib/sequana 2022-08-08T22:01:12,856 copying sequana/kmer.py -> build/lib/sequana 2022-08-08T22:01:12,859 copying sequana/compare.py -> build/lib/sequana 2022-08-08T22:01:12,863 copying sequana/contigs.py -> build/lib/sequana 2022-08-08T22:01:12,867 copying sequana/ribodesigner.py -> build/lib/sequana 2022-08-08T22:01:12,871 copying sequana/rnadiff.py -> build/lib/sequana 2022-08-08T22:01:12,877 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2022-08-08T22:01:12,881 copying sequana/phred.py -> build/lib/sequana 2022-08-08T22:01:12,885 copying sequana/cigar.py -> build/lib/sequana 2022-08-08T22:01:12,889 copying sequana/running_median.py -> build/lib/sequana 2022-08-08T22:01:12,893 copying sequana/cnv.py -> build/lib/sequana 2022-08-08T22:01:12,896 copying sequana/fasta.py -> build/lib/sequana 2022-08-08T22:01:12,900 copying sequana/fastqc.py -> build/lib/sequana 2022-08-08T22:01:12,904 copying sequana/kegg.py -> build/lib/sequana 2022-08-08T22:01:12,907 copying sequana/bedtools.py -> build/lib/sequana 2022-08-08T22:01:12,915 copying sequana/stats.py -> build/lib/sequana 2022-08-08T22:01:12,918 copying sequana/gtf.py -> build/lib/sequana 2022-08-08T22:01:12,921 copying sequana/fastq.py -> build/lib/sequana 2022-08-08T22:01:12,927 copying sequana/errors.py -> build/lib/sequana 2022-08-08T22:01:12,930 copying sequana/iem.py -> build/lib/sequana 2022-08-08T22:01:12,934 copying sequana/krona.py -> build/lib/sequana 2022-08-08T22:01:12,937 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2022-08-08T22:01:12,941 copying sequana/isoseq.py -> build/lib/sequana 2022-08-08T22:01:12,946 copying sequana/sniffer.py -> build/lib/sequana 2022-08-08T22:01:12,949 copying sequana/find_motif.py -> build/lib/sequana 2022-08-08T22:01:12,953 copying sequana/canu_scanner.py -> build/lib/sequana 2022-08-08T22:01:12,957 copying sequana/vcftools.py -> build/lib/sequana 2022-08-08T22:01:12,961 copying sequana/criteria.py -> build/lib/sequana 2022-08-08T22:01:12,965 copying sequana/bamtools.py -> build/lib/sequana 2022-08-08T22:01:12,972 copying sequana/misc.py -> build/lib/sequana 2022-08-08T22:01:12,975 copying sequana/datatools.py -> build/lib/sequana 2022-08-08T22:01:12,978 copying sequana/gff3.py -> build/lib/sequana 2022-08-08T22:01:12,982 copying sequana/salmon.py -> build/lib/sequana 2022-08-08T22:01:12,986 copying sequana/lazyimports.py -> build/lib/sequana 2022-08-08T22:01:12,990 copying sequana/snpeff.py -> build/lib/sequana 2022-08-08T22:01:12,994 copying sequana/assembly.py -> build/lib/sequana 2022-08-08T22:01:12,998 copying sequana/itol.py -> build/lib/sequana 2022-08-08T22:01:13,002 copying sequana/demultiplex.py -> build/lib/sequana 2022-08-08T22:01:13,006 copying sequana/trf.py -> build/lib/sequana 2022-08-08T22:01:13,010 copying sequana/lazy.py -> build/lib/sequana 2022-08-08T22:01:13,013 copying sequana/vst.py -> build/lib/sequana 2022-08-08T22:01:13,016 copying sequana/mgi.py -> build/lib/sequana 2022-08-08T22:01:13,019 copying sequana/chipseq.py -> build/lib/sequana 2022-08-08T22:01:13,025 copying sequana/vcf_filter.py -> build/lib/sequana 2022-08-08T22:01:13,030 copying sequana/bed.py -> build/lib/sequana 2022-08-08T22:01:13,033 copying sequana/iuapc.py -> build/lib/sequana 2022-08-08T22:01:13,037 copying sequana/mh.py -> build/lib/sequana 2022-08-08T22:01:13,040 copying sequana/jsontool.py -> build/lib/sequana 2022-08-08T22:01:13,043 copying sequana/genbank.py -> build/lib/sequana 2022-08-08T22:01:13,047 copying sequana/summary.py -> build/lib/sequana 2022-08-08T22:01:13,051 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2022-08-08T22:01:13,057 creating build/lib/sequana/scripts 2022-08-08T22:01:13,059 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2022-08-08T22:01:13,064 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2022-08-08T22:01:13,066 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2022-08-08T22:01:13,071 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2022-08-08T22:01:13,075 copying sequana/scripts/start_pipeline.py -> build/lib/sequana/scripts 2022-08-08T22:01:13,080 creating build/lib/sequana/rules 2022-08-08T22:01:13,081 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2022-08-08T22:01:13,087 creating build/lib/sequana/viz 2022-08-08T22:01:13,088 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2022-08-08T22:01:13,093 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2022-08-08T22:01:13,097 copying sequana/viz/venn.py -> build/lib/sequana/viz 2022-08-08T22:01:13,100 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2022-08-08T22:01:13,103 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2022-08-08T22:01:13,107 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2022-08-08T22:01:13,112 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2022-08-08T22:01:13,115 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2022-08-08T22:01:13,119 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2022-08-08T22:01:13,123 copying sequana/viz/mds.py -> build/lib/sequana/viz 2022-08-08T22:01:13,126 copying sequana/viz/pca.py -> build/lib/sequana/viz 2022-08-08T22:01:13,130 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2022-08-08T22:01:13,134 copying sequana/viz/core.py -> build/lib/sequana/viz 2022-08-08T22:01:13,137 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2022-08-08T22:01:13,141 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2022-08-08T22:01:13,144 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2022-08-08T22:01:13,148 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2022-08-08T22:01:13,151 copying sequana/viz/anova.py -> build/lib/sequana/viz 2022-08-08T22:01:13,155 creating build/lib/sequana/plots 2022-08-08T22:01:13,157 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2022-08-08T22:01:13,160 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2022-08-08T22:01:13,163 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2022-08-08T22:01:13,168 creating build/lib/sequana/resources 2022-08-08T22:01:13,169 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2022-08-08T22:01:13,174 creating build/lib/sequana/multiqc 2022-08-08T22:01:13,176 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2022-08-08T22:01:13,180 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2022-08-08T22:01:13,183 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2022-08-08T22:01:13,186 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2022-08-08T22:01:13,189 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2022-08-08T22:01:13,193 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2022-08-08T22:01:13,197 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2022-08-08T22:01:13,201 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2022-08-08T22:01:13,204 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2022-08-08T22:01:13,208 copying sequana/multiqc/plots.py -> build/lib/sequana/multiqc 2022-08-08T22:01:13,211 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2022-08-08T22:01:13,214 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2022-08-08T22:01:13,219 creating build/lib/sequana/utils 2022-08-08T22:01:13,221 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2022-08-08T22:01:13,225 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2022-08-08T22:01:13,228 copying sequana/utils/config.py -> build/lib/sequana/utils 2022-08-08T22:01:13,231 copying sequana/utils/singleton.py -> build/lib/sequana/utils 2022-08-08T22:01:13,235 copying sequana/utils/df2html.py -> build/lib/sequana/utils 2022-08-08T22:01:13,238 copying sequana/utils/tree.py -> build/lib/sequana/utils 2022-08-08T22:01:13,244 creating build/lib/sequana/kraken 2022-08-08T22:01:13,245 copying sequana/kraken/__init__.py -> build/lib/sequana/kraken 2022-08-08T22:01:13,248 copying sequana/kraken/analysis.py -> build/lib/sequana/kraken 2022-08-08T22:01:13,254 copying sequana/kraken/multikraken.py -> build/lib/sequana/kraken 2022-08-08T22:01:13,261 creating build/lib/sequana/modules_report 2022-08-08T22:01:13,262 copying sequana/modules_report/kegg_enrichment.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,266 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,271 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,274 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,277 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,283 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,287 copying sequana/modules_report/uniprot_enrichment.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,291 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,294 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,297 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,302 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,306 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,309 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,313 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,316 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,320 copying sequana/modules_report/trf.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,323 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,327 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,330 copying sequana/modules_report/panther_enrichment.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,334 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,339 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2022-08-08T22:01:13,344 creating build/lib/sequana/enrichment 2022-08-08T22:01:13,346 copying sequana/enrichment/__init__.py -> build/lib/sequana/enrichment 2022-08-08T22:01:13,350 copying sequana/enrichment/uniprot_enrichment.py -> build/lib/sequana/enrichment 2022-08-08T22:01:13,354 copying sequana/enrichment/gsea.py -> build/lib/sequana/enrichment 2022-08-08T22:01:13,357 copying sequana/enrichment/kegg.py -> build/lib/sequana/enrichment 2022-08-08T22:01:13,362 copying sequana/enrichment/mart.py -> build/lib/sequana/enrichment 2022-08-08T22:01:13,365 copying sequana/enrichment/ontology.py -> build/lib/sequana/enrichment 2022-08-08T22:01:13,368 copying sequana/enrichment/plot_go_terms.py -> build/lib/sequana/enrichment 2022-08-08T22:01:13,373 copying sequana/enrichment/panther.py -> build/lib/sequana/enrichment 2022-08-08T22:01:13,377 copying sequana/enrichment/quickgo.py -> build/lib/sequana/enrichment 2022-08-08T22:01:13,385 creating build/lib/sequana/scripts/main 2022-08-08T22:01:13,387 copying sequana/scripts/main/enrichment_kegg.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,391 copying sequana/scripts/main/__init__.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,394 copying sequana/scripts/main/biomart.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,397 copying sequana/scripts/main/utils.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,401 copying sequana/scripts/main/feature_count.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,404 copying sequana/scripts/main/lane_merging.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,408 copying sequana/scripts/main/gtf_fixer.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,412 copying sequana/scripts/main/gff_to_gtf.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,416 copying sequana/scripts/main/taxonomy.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,419 copying sequana/scripts/main/samplesheet.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,423 copying sequana/scripts/main/mapping.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,427 copying sequana/scripts/main/ribodesigner.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,431 copying sequana/scripts/main/enrichment_panther.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,435 copying sequana/scripts/main/rnadiff.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,439 copying sequana/scripts/main/enrichment_uniprot.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,444 copying sequana/scripts/main/fasta.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,447 copying sequana/scripts/main/fastq.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,450 copying sequana/scripts/main/salmon.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,454 copying sequana/scripts/main/main.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,457 copying sequana/scripts/main/gff_to_light_gff.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,460 copying sequana/scripts/main/rnaseq_compare.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,464 copying sequana/scripts/main/summary.py -> build/lib/sequana/scripts/main 2022-08-08T22:01:13,468 creating build/lib/sequana/rules/codecs 2022-08-08T22:01:13,470 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2022-08-08T22:01:13,474 creating build/lib/sequana/rules/sambamba 2022-08-08T22:01:13,475 copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba 2022-08-08T22:01:13,479 creating build/lib/sequana/rules/idr 2022-08-08T22:01:13,480 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2022-08-08T22:01:13,484 creating build/lib/sequana/rules/Pacbio 2022-08-08T22:01:13,485 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2022-08-08T22:01:13,489 creating build/lib/sequana/rules/SnpEff 2022-08-08T22:01:13,491 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2022-08-08T22:01:13,495 creating build/lib/sequana/rules/picard-tools 2022-08-08T22:01:13,496 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2022-08-08T22:01:13,500 creating build/lib/sequana/rules/Utils 2022-08-08T22:01:13,501 copying sequana/rules/Utils/__init__.py -> build/lib/sequana/rules/Utils 2022-08-08T22:01:13,505 creating build/lib/sequana/rules/deeptools 2022-08-08T22:01:13,506 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2022-08-08T22:01:13,510 creating build/lib/sequana/resources/snpeff 2022-08-08T22:01:13,512 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2022-08-08T22:01:13,515 creating build/lib/sequana/resources/images 2022-08-08T22:01:13,517 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2022-08-08T22:01:13,521 creating build/lib/sequana/resources/js 2022-08-08T22:01:13,522 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2022-08-08T22:01:13,526 creating build/lib/sequana/resources/doc 2022-08-08T22:01:13,527 copying sequana/resources/doc/__init__.py -> build/lib/sequana/resources/doc 2022-08-08T22:01:13,531 creating build/lib/sequana/resources/templates 2022-08-08T22:01:13,532 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2022-08-08T22:01:13,536 creating build/lib/sequana/resources/css 2022-08-08T22:01:13,537 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2022-08-08T22:01:13,541 creating build/lib/sequana/resources/testing 2022-08-08T22:01:13,543 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2022-08-08T22:01:13,546 creating build/lib/sequana/resources/examples 2022-08-08T22:01:13,548 copying sequana/resources/examples/__init__.py -> build/lib/sequana/resources/examples 2022-08-08T22:01:13,552 creating build/lib/sequana/resources/data 2022-08-08T22:01:13,553 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2022-08-08T22:01:13,558 creating build/lib/sequana/resources/canvas 2022-08-08T22:01:13,559 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2022-08-08T22:01:13,562 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2022-08-08T22:01:13,566 creating build/lib/sequana/resources/doc/rnadiff_compare 2022-08-08T22:01:13,568 copying sequana/resources/doc/rnadiff_compare/__init__.py -> build/lib/sequana/resources/doc/rnadiff_compare 2022-08-08T22:01:13,572 creating build/lib/sequana/resources/doc/rnaseq_0 2022-08-08T22:01:13,573 copying sequana/resources/doc/rnaseq_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0 2022-08-08T22:01:13,577 creating build/lib/sequana/resources/doc/rnaseq_0/sample1 2022-08-08T22:01:13,579 copying sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1 2022-08-08T22:01:13,583 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2022-08-08T22:01:13,584 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2022-08-08T22:01:13,589 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2022-08-08T22:01:13,590 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2022-08-08T22:01:13,594 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2022-08-08T22:01:13,595 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2022-08-08T22:01:14,046 copying sequana/rules/README.rst -> build/lib/sequana/rules 2022-08-08T22:01:14,050 creating build/lib/sequana/rules/fastq_screen_report 2022-08-08T22:01:14,051 copying sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/fastq_screen_report 2022-08-08T22:01:14,057 creating build/lib/sequana/rules/bed_to_gff 2022-08-08T22:01:14,058 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2022-08-08T22:01:14,062 creating build/lib/sequana/rules/preSARTools 2022-08-08T22:01:14,063 copying sequana/rules/preSARTools/preSARTools.rules -> build/lib/sequana/rules/preSARTools 2022-08-08T22:01:14,068 creating build/lib/sequana/rules/samtools_depth 2022-08-08T22:01:14,069 copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth 2022-08-08T22:01:14,073 creating build/lib/sequana/rules/copy_multiple_files 2022-08-08T22:01:14,075 copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files 2022-08-08T22:01:14,079 creating build/lib/sequana/rules/joint_freebayes_vcf_filter 2022-08-08T22:01:14,080 copying sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/joint_freebayes_vcf_filter 2022-08-08T22:01:14,084 creating build/lib/sequana/rules/mapping_analysis 2022-08-08T22:01:14,086 copying sequana/rules/mapping_analysis/mapping_analysis.rules -> build/lib/sequana/rules/mapping_analysis 2022-08-08T22:01:14,090 creating build/lib/sequana/rules/fastp 2022-08-08T22:01:14,091 copying sequana/rules/fastp/fastp.rules -> build/lib/sequana/rules/fastp 2022-08-08T22:01:14,096 creating build/lib/sequana/rules/rulegraph 2022-08-08T22:01:14,097 copying sequana/rules/rulegraph/rulegraph.rules -> build/lib/sequana/rules/rulegraph 2022-08-08T22:01:14,101 creating build/lib/sequana/rules/bowtie2_index 2022-08-08T22:01:14,103 copying sequana/rules/bowtie2_index/bowtie2_index.rules -> build/lib/sequana/rules/bowtie2_index 2022-08-08T22:01:14,107 creating build/lib/sequana/rules/fastq_sampling 2022-08-08T22:01:14,109 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2022-08-08T22:01:14,113 creating build/lib/sequana/rules/spp 2022-08-08T22:01:14,114 copying sequana/rules/spp/spp.rules -> build/lib/sequana/rules/spp 2022-08-08T22:01:14,118 creating build/lib/sequana/rules/extract_fasta_from_bed 2022-08-08T22:01:14,120 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2022-08-08T22:01:14,124 creating build/lib/sequana/rules/DupRadar 2022-08-08T22:01:14,125 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2022-08-08T22:01:14,130 creating build/lib/sequana/rules/rnaseqc 2022-08-08T22:01:14,131 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2022-08-08T22:01:14,135 creating build/lib/sequana/rules/samtools_sort 2022-08-08T22:01:14,137 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2022-08-08T22:01:14,141 creating build/lib/sequana/rules/multiqc2 2022-08-08T22:01:14,142 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 2022-08-08T22:01:14,146 creating build/lib/sequana/rules/spikes_counting 2022-08-08T22:01:14,147 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2022-08-08T22:01:14,152 creating build/lib/sequana/rules/dag 2022-08-08T22:01:14,153 copying sequana/rules/dag/dag.rules -> build/lib/sequana/rules/dag 2022-08-08T22:01:14,157 creating build/lib/sequana/rules/feature_counts 2022-08-08T22:01:14,159 copying sequana/rules/feature_counts/feature_counts.rules -> build/lib/sequana/rules/feature_counts 2022-08-08T22:01:14,163 creating build/lib/sequana/rules/format_contigs 2022-08-08T22:01:14,164 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2022-08-08T22:01:14,169 creating build/lib/sequana/rules/multiqc 2022-08-08T22:01:14,170 copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc 2022-08-08T22:01:14,174 creating build/lib/sequana/rules/indel_realigner 2022-08-08T22:01:14,176 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2022-08-08T22:01:14,180 creating build/lib/sequana/rules/bwa_bam_to_fastq 2022-08-08T22:01:14,181 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2022-08-08T22:01:14,186 creating build/lib/sequana/rules/spades_get_fastq 2022-08-08T22:01:14,187 copying sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/spades_get_fastq 2022-08-08T22:01:14,191 creating build/lib/sequana/rules/salmon_index 2022-08-08T22:01:14,193 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2022-08-08T22:01:14,197 creating build/lib/sequana/rules/fastq_screen 2022-08-08T22:01:14,198 copying sequana/rules/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/fastq_screen 2022-08-08T22:01:14,202 creating build/lib/sequana/rules/canu 2022-08-08T22:01:14,204 copying sequana/rules/canu/canu.rules -> build/lib/sequana/rules/canu 2022-08-08T22:01:14,208 creating build/lib/sequana/rules/falco 2022-08-08T22:01:14,210 copying sequana/rules/falco/falco.rules -> build/lib/sequana/rules/falco 2022-08-08T22:01:14,214 creating build/lib/sequana/rules/freebayes_bcf_filter 2022-08-08T22:01:14,215 copying sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/freebayes_bcf_filter 2022-08-08T22:01:14,219 creating build/lib/sequana/rules/star_index 2022-08-08T22:01:14,221 copying sequana/rules/star_index/star_index.rules -> build/lib/sequana/rules/star_index 2022-08-08T22:01:14,225 creating build/lib/sequana/rules/star_mapping 2022-08-08T22:01:14,226 copying sequana/rules/star_mapping/star_mapping.rules -> build/lib/sequana/rules/star_mapping 2022-08-08T22:01:14,230 creating build/lib/sequana/rules/cutadapt 2022-08-08T22:01:14,232 copying sequana/rules/cutadapt/cutadapt.rules -> build/lib/sequana/rules/cutadapt 2022-08-08T22:01:14,236 creating build/lib/sequana/rules/pacbio_quality 2022-08-08T22:01:14,238 copying sequana/rules/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/pacbio_quality 2022-08-08T22:01:14,242 creating build/lib/sequana/rules/bwa_index 2022-08-08T22:01:14,244 copying sequana/rules/bwa_index/bwa_index.rules -> build/lib/sequana/rules/bwa_index 2022-08-08T22:01:14,248 creating build/lib/sequana/rules/fastqc 2022-08-08T22:01:14,249 copying sequana/rules/fastqc/fastqc.rules -> build/lib/sequana/rules/fastqc 2022-08-08T22:01:14,254 creating build/lib/sequana/rules/prokka 2022-08-08T22:01:14,255 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2022-08-08T22:01:14,259 creating build/lib/sequana/rules/spades 2022-08-08T22:01:14,260 copying sequana/rules/spades/spades.rules -> build/lib/sequana/rules/spades 2022-08-08T22:01:14,265 creating build/lib/sequana/rules/igvtools 2022-08-08T22:01:14,266 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2022-08-08T22:01:14,270 creating build/lib/sequana/rules/salmon_mapping 2022-08-08T22:01:14,271 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2022-08-08T22:01:14,275 creating build/lib/sequana/rules/sequana_coverage 2022-08-08T22:01:14,277 copying sequana/rules/sequana_coverage/sequana_coverage.rules -> build/lib/sequana/rules/sequana_coverage 2022-08-08T22:01:14,282 creating build/lib/sequana/rules/freebayes 2022-08-08T22:01:14,283 copying sequana/rules/freebayes/freebayes.rules -> build/lib/sequana/rules/freebayes 2022-08-08T22:01:14,287 creating build/lib/sequana/rules/SARTools 2022-08-08T22:01:14,289 copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools 2022-08-08T22:01:14,294 creating build/lib/sequana/rules/quast 2022-08-08T22:01:14,295 copying sequana/rules/quast/quast.rules -> build/lib/sequana/rules/quast 2022-08-08T22:01:14,300 creating build/lib/sequana/rules/tophat_mapping 2022-08-08T22:01:14,301 copying sequana/rules/tophat_mapping/tophat_mapping.rules -> build/lib/sequana/rules/tophat_mapping 2022-08-08T22:01:14,305 creating build/lib/sequana/rules/bamCoverage 2022-08-08T22:01:14,307 copying sequana/rules/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/bamCoverage 2022-08-08T22:01:14,311 creating build/lib/sequana/rules/summary_pipeline 2022-08-08T22:01:14,312 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2022-08-08T22:01:14,316 creating build/lib/sequana/rules/bam_quality_filter 2022-08-08T22:01:14,319 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2022-08-08T22:01:14,323 creating build/lib/sequana/rules/freebayes_vcf_filter 2022-08-08T22:01:14,324 copying sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/freebayes_vcf_filter 2022-08-08T22:01:14,328 creating build/lib/sequana/rules/revcomp_rule 2022-08-08T22:01:14,330 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2022-08-08T22:01:14,334 creating build/lib/sequana/rules/miRNA_count_dynamic 2022-08-08T22:01:14,335 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2022-08-08T22:01:14,339 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2022-08-08T22:01:14,341 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2022-08-08T22:01:14,345 creating build/lib/sequana/rules/codecs/vcf_to_bcf 2022-08-08T22:01:14,346 copying sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/lib/sequana/rules/codecs/vcf_to_bcf 2022-08-08T22:01:14,350 creating build/lib/sequana/rules/codecs/bz2_to_gz 2022-08-08T22:01:14,352 copying sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/lib/sequana/rules/codecs/bz2_to_gz 2022-08-08T22:01:14,356 creating build/lib/sequana/rules/codecs/dsrc_to_gz 2022-08-08T22:01:14,357 copying sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/lib/sequana/rules/codecs/dsrc_to_gz 2022-08-08T22:01:14,362 creating build/lib/sequana/rules/codecs/gz_to_fastq 2022-08-08T22:01:14,363 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2022-08-08T22:01:14,367 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2022-08-08T22:01:14,369 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2022-08-08T22:01:14,373 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2022-08-08T22:01:14,374 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2022-08-08T22:01:14,379 creating build/lib/sequana/rules/codecs/fastq_to_gz 2022-08-08T22:01:14,381 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2022-08-08T22:01:14,385 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2022-08-08T22:01:14,386 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2022-08-08T22:01:14,390 creating build/lib/sequana/rules/codecs/gz_to_bz2 2022-08-08T22:01:14,392 copying sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/lib/sequana/rules/codecs/gz_to_bz2 2022-08-08T22:01:14,396 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2022-08-08T22:01:14,397 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2022-08-08T22:01:14,402 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2022-08-08T22:01:14,403 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2022-08-08T22:01:14,407 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2022-08-08T22:01:14,409 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2022-08-08T22:01:14,413 creating build/lib/sequana/rules/sambamba/sambamba_markdup 2022-08-08T22:01:14,415 copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup 2022-08-08T22:01:14,419 creating build/lib/sequana/rules/sambamba/sambamba_filter 2022-08-08T22:01:14,421 copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter 2022-08-08T22:01:14,425 creating build/lib/sequana/rules/idr/compute_idr 2022-08-08T22:01:14,427 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2022-08-08T22:01:14,431 creating build/lib/sequana/rules/idr/stats_peakCalling 2022-08-08T22:01:14,432 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2022-08-08T22:01:14,436 creating build/lib/sequana/rules/idr/select_peaks 2022-08-08T22:01:14,438 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2022-08-08T22:01:14,442 creating build/lib/sequana/rules/idr/union_peaks 2022-08-08T22:01:14,444 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2022-08-08T22:01:14,448 creating build/lib/sequana/rules/idr/metrics_peaks 2022-08-08T22:01:14,449 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2022-08-08T22:01:14,453 creating build/lib/sequana/rules/idr/preIDR_dynamic 2022-08-08T22:01:14,455 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2022-08-08T22:01:14,460 creating build/lib/sequana/rules/idr/intersectionApproach 2022-08-08T22:01:14,462 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2022-08-08T22:01:14,466 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2022-08-08T22:01:14,467 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2022-08-08T22:01:14,471 creating build/lib/sequana/rules/multiqc/2.0 2022-08-08T22:01:14,473 copying sequana/rules/multiqc/2.0/multiqc.rules -> build/lib/sequana/rules/multiqc/2.0 2022-08-08T22:01:14,477 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-08-08T22:01:14,479 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-08-08T22:01:14,483 creating build/lib/sequana/rules/picard-tools/add_read_group 2022-08-08T22:01:14,484 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2022-08-08T22:01:14,489 creating build/lib/sequana/rules/picard-tools/reorderSam 2022-08-08T22:01:14,490 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2022-08-08T22:01:14,494 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2022-08-08T22:01:14,495 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2022-08-08T22:01:14,500 creating build/lib/sequana/rules/picard-tools/mark_duplicates 2022-08-08T22:01:14,501 copying sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates 2022-08-08T22:01:14,505 creating build/lib/sequana/rules/kraken 2022-08-08T22:01:14,506 creating build/lib/sequana/rules/kraken/1.1 2022-08-08T22:01:14,508 copying sequana/rules/kraken/1.1/kraken.rules -> build/lib/sequana/rules/kraken/1.1 2022-08-08T22:01:14,513 creating build/lib/sequana/rules/kraken/2.0 2022-08-08T22:01:14,514 copying sequana/rules/kraken/2.0/kraken.rules -> build/lib/sequana/rules/kraken/2.0 2022-08-08T22:01:14,518 creating build/lib/sequana/rules/kraken/1.0 2022-08-08T22:01:14,520 copying sequana/rules/kraken/1.0/kraken.rules -> build/lib/sequana/rules/kraken/1.0 2022-08-08T22:01:14,524 creating build/lib/sequana/rules/deeptools/plotCorrelation 2022-08-08T22:01:14,525 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2022-08-08T22:01:14,530 creating build/lib/sequana/rules/deeptools/multiBamSummary 2022-08-08T22:01:14,531 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2022-08-08T22:01:14,535 creating build/lib/sequana/rules/deeptools/plotCoverage 2022-08-08T22:01:14,537 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2022-08-08T22:01:14,541 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2022-08-08T22:01:14,543 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2022-08-08T22:01:14,547 creating build/lib/sequana/rules/SnpEff/snpeff 2022-08-08T22:01:14,548 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2022-08-08T22:01:14,550 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2022-08-08T22:01:14,554 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2022-08-08T22:01:14,556 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2022-08-08T22:01:14,560 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2022-08-08T22:01:14,560 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-08-08T22:01:14,562 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-08-08T22:01:14,567 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-08-08T22:01:14,568 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-08-08T22:01:14,573 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2022-08-08T22:01:14,577 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2022-08-08T22:01:14,583 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2022-08-08T22:01:14,592 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2022-08-08T22:01:14,597 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2022-08-08T22:01:14,602 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2022-08-08T22:01:14,606 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2022-08-08T22:01:14,617 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2022-08-08T22:01:14,627 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2022-08-08T22:01:14,644 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2022-08-08T22:01:14,654 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2022-08-08T22:01:14,658 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2022-08-08T22:01:14,667 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2022-08-08T22:01:14,671 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2022-08-08T22:01:14,677 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2022-08-08T22:01:14,683 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2022-08-08T22:01:14,701 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2022-08-08T22:01:14,706 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2022-08-08T22:01:14,711 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2022-08-08T22:01:14,716 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2022-08-08T22:01:14,720 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2022-08-08T22:01:14,724 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2022-08-08T22:01:14,729 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2022-08-08T22:01:14,734 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2022-08-08T22:01:14,744 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2022-08-08T22:01:14,750 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2022-08-08T22:01:14,755 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2022-08-08T22:01:14,759 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2022-08-08T22:01:14,763 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2022-08-08T22:01:14,768 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2022-08-08T22:01:14,808 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2022-08-08T22:01:14,812 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2022-08-08T22:01:14,834 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2022-08-08T22:01:14,838 copying sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/lib/sequana/resources/testing 2022-08-08T22:01:14,842 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2022-08-08T22:01:14,846 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2022-08-08T22:01:14,868 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2022-08-08T22:01:14,872 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2022-08-08T22:01:14,876 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2022-08-08T22:01:14,880 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2022-08-08T22:01:14,886 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2022-08-08T22:01:14,890 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2022-08-08T22:01:14,894 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2022-08-08T22:01:14,899 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2022-08-08T22:01:14,903 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2022-08-08T22:01:14,908 copying sequana/resources/examples/README.rst -> build/lib/sequana/resources/examples 2022-08-08T22:01:14,914 copying sequana/resources/examples/test_kraken.out -> build/lib/sequana/resources/examples 2022-08-08T22:01:14,919 copying sequana/resources/examples/test.fastq.gz -> build/lib/sequana/resources/examples 2022-08-08T22:01:14,925 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2022-08-08T22:01:14,930 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2022-08-08T22:01:14,935 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2022-08-08T22:01:14,939 copying sequana/resources/data/panther.csv -> build/lib/sequana/resources/data 2022-08-08T22:01:14,945 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2022-08-08T22:01:14,957 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2022-08-08T22:01:14,979 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2022-08-08T22:01:14,990 copying sequana/resources/data/kegg.csv -> build/lib/sequana/resources/data 2022-08-08T22:01:15,811 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-08-08T22:01:15,812 setuptools.SetuptoolsDeprecationWarning, 2022-08-08T22:01:16,552 installing to build/bdist.linux-armv7l/wheel 2022-08-08T22:01:16,553 running install 2022-08-08T22:01:16,613 running install_lib 2022-08-08T22:01:17,361 creating build/bdist.linux-armv7l 2022-08-08T22:01:17,362 creating build/bdist.linux-armv7l/wheel 2022-08-08T22:01:17,367 creating build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:17,370 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2022-08-08T22:01:17,372 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-08-08T22:01:17,377 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-08-08T22:01:17,380 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-08-08T22:01:17,385 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-08-08T22:01:17,391 creating build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,392 copying build/lib/sequana/scripts/main/enrichment_kegg.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,397 copying build/lib/sequana/scripts/main/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,400 copying build/lib/sequana/scripts/main/biomart.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,404 copying build/lib/sequana/scripts/main/utils.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,407 copying build/lib/sequana/scripts/main/feature_count.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,411 copying build/lib/sequana/scripts/main/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,416 copying build/lib/sequana/scripts/main/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,420 copying build/lib/sequana/scripts/main/gff_to_gtf.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,423 copying build/lib/sequana/scripts/main/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,427 copying build/lib/sequana/scripts/main/samplesheet.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,430 copying build/lib/sequana/scripts/main/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,434 copying build/lib/sequana/scripts/main/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,437 copying build/lib/sequana/scripts/main/enrichment_panther.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,441 copying build/lib/sequana/scripts/main/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,445 copying build/lib/sequana/scripts/main/enrichment_uniprot.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,450 copying build/lib/sequana/scripts/main/fasta.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,453 copying build/lib/sequana/scripts/main/fastq.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,456 copying build/lib/sequana/scripts/main/salmon.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,460 copying build/lib/sequana/scripts/main/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,463 copying build/lib/sequana/scripts/main/gff_to_light_gff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,466 copying build/lib/sequana/scripts/main/rnaseq_compare.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,470 copying build/lib/sequana/scripts/main/summary.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-08-08T22:01:17,474 copying build/lib/sequana/scripts/start_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-08-08T22:01:17,478 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:17,483 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:17,487 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:17,492 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:17,496 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:17,501 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:17,505 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:17,513 creating build/bdist.linux-armv7l/wheel/sequana/rules 2022-08-08T22:01:17,516 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2022-08-08T22:01:17,519 copying build/lib/sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2022-08-08T22:01:17,525 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2022-08-08T22:01:17,527 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2022-08-08T22:01:17,532 creating build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2022-08-08T22:01:17,534 copying build/lib/sequana/rules/preSARTools/preSARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2022-08-08T22:01:17,540 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2022-08-08T22:01:17,543 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2022-08-08T22:01:17,545 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2022-08-08T22:01:17,550 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2022-08-08T22:01:17,552 copying build/lib/sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2022-08-08T22:01:17,556 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2022-08-08T22:01:17,561 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2022-08-08T22:01:17,563 copying build/lib/sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2022-08-08T22:01:17,568 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2022-08-08T22:01:17,570 copying build/lib/sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2022-08-08T22:01:17,575 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2022-08-08T22:01:17,577 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2022-08-08T22:01:17,582 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2022-08-08T22:01:17,584 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2022-08-08T22:01:17,590 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2022-08-08T22:01:17,592 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2022-08-08T22:01:17,597 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2022-08-08T22:01:17,599 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2022-08-08T22:01:17,604 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2022-08-08T22:01:17,606 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2022-08-08T22:01:17,611 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2022-08-08T22:01:17,613 copying build/lib/sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2022-08-08T22:01:17,619 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2022-08-08T22:01:17,621 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2022-08-08T22:01:17,627 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2022-08-08T22:01:17,629 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2022-08-08T22:01:17,634 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2022-08-08T22:01:17,636 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2022-08-08T22:01:17,640 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2022-08-08T22:01:17,645 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2022-08-08T22:01:17,647 copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2022-08-08T22:01:17,652 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2022-08-08T22:01:17,656 creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2022-08-08T22:01:17,658 copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2022-08-08T22:01:17,663 creating build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2022-08-08T22:01:17,665 copying build/lib/sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2022-08-08T22:01:17,670 creating build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2022-08-08T22:01:17,672 copying build/lib/sequana/rules/mapping_analysis/mapping_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2022-08-08T22:01:17,676 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2022-08-08T22:01:17,678 copying build/lib/sequana/rules/fastp/fastp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2022-08-08T22:01:17,682 creating build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2022-08-08T22:01:17,684 copying build/lib/sequana/rules/rulegraph/rulegraph.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2022-08-08T22:01:17,688 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index 2022-08-08T22:01:17,690 copying build/lib/sequana/rules/bowtie2_index/bowtie2_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index 2022-08-08T22:01:17,694 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2022-08-08T22:01:17,695 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2022-08-08T22:01:17,700 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2022-08-08T22:01:17,701 copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2022-08-08T22:01:17,705 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2022-08-08T22:01:17,706 copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2022-08-08T22:01:17,711 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2022-08-08T22:01:17,712 copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2022-08-08T22:01:17,717 creating build/bdist.linux-armv7l/wheel/sequana/rules/spp 2022-08-08T22:01:17,718 copying build/lib/sequana/rules/spp/spp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spp 2022-08-08T22:01:17,723 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2022-08-08T22:01:17,724 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2022-08-08T22:01:17,728 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2022-08-08T22:01:17,729 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2022-08-08T22:01:17,734 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2022-08-08T22:01:17,735 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2022-08-08T22:01:17,740 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2022-08-08T22:01:17,741 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2022-08-08T22:01:17,745 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2022-08-08T22:01:17,747 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2022-08-08T22:01:17,751 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2022-08-08T22:01:17,752 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2022-08-08T22:01:17,757 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2022-08-08T22:01:17,758 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2022-08-08T22:01:17,764 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2022-08-08T22:01:17,765 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2022-08-08T22:01:17,770 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2022-08-08T22:01:17,771 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2022-08-08T22:01:17,775 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2022-08-08T22:01:17,777 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2022-08-08T22:01:17,781 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2022-08-08T22:01:17,783 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2022-08-08T22:01:17,787 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2022-08-08T22:01:17,789 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2022-08-08T22:01:17,793 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2022-08-08T22:01:17,794 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2022-08-08T22:01:17,799 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2022-08-08T22:01:17,800 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2022-08-08T22:01:17,804 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2022-08-08T22:01:17,806 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2022-08-08T22:01:17,810 creating build/bdist.linux-armv7l/wheel/sequana/rules/dag 2022-08-08T22:01:17,811 copying build/lib/sequana/rules/dag/dag.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/dag 2022-08-08T22:01:17,815 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2022-08-08T22:01:17,817 copying build/lib/sequana/rules/feature_counts/feature_counts.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2022-08-08T22:01:17,821 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2022-08-08T22:01:17,823 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2022-08-08T22:01:17,826 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2022-08-08T22:01:17,828 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2022-08-08T22:01:17,832 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2022-08-08T22:01:17,833 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2022-08-08T22:01:17,839 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2022-08-08T22:01:17,843 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2022-08-08T22:01:17,844 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2022-08-08T22:01:17,848 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2022-08-08T22:01:17,851 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-08-08T22:01:17,852 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-08-08T22:01:17,857 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-08-08T22:01:17,858 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-08-08T22:01:17,863 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2022-08-08T22:01:17,864 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2022-08-08T22:01:17,868 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2022-08-08T22:01:17,871 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2022-08-08T22:01:17,872 copying build/lib/sequana/rules/multiqc/2.0/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2022-08-08T22:01:17,875 copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2022-08-08T22:01:17,880 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2022-08-08T22:01:17,882 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2022-08-08T22:01:17,885 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-08-08T22:01:17,887 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-08-08T22:01:17,891 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2022-08-08T22:01:17,892 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2022-08-08T22:01:17,897 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2022-08-08T22:01:17,899 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2022-08-08T22:01:17,903 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2022-08-08T22:01:17,904 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2022-08-08T22:01:17,909 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2022-08-08T22:01:17,910 copying build/lib/sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2022-08-08T22:01:17,914 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2022-08-08T22:01:17,916 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2022-08-08T22:01:17,920 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2022-08-08T22:01:17,922 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2022-08-08T22:01:17,926 creating build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2022-08-08T22:01:17,927 copying build/lib/sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2022-08-08T22:01:17,932 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2022-08-08T22:01:17,933 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2022-08-08T22:01:17,937 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2022-08-08T22:01:17,939 copying build/lib/sequana/rules/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2022-08-08T22:01:17,943 creating build/bdist.linux-armv7l/wheel/sequana/rules/canu 2022-08-08T22:01:17,944 copying build/lib/sequana/rules/canu/canu.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/canu 2022-08-08T22:01:17,949 creating build/bdist.linux-armv7l/wheel/sequana/rules/falco 2022-08-08T22:01:17,950 copying build/lib/sequana/rules/falco/falco.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/falco 2022-08-08T22:01:17,954 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2022-08-08T22:01:17,956 copying build/lib/sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2022-08-08T22:01:17,960 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2022-08-08T22:01:17,961 copying build/lib/sequana/rules/star_index/star_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2022-08-08T22:01:17,966 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2022-08-08T22:01:17,967 copying build/lib/sequana/rules/star_mapping/star_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2022-08-08T22:01:17,972 creating build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2022-08-08T22:01:17,973 copying build/lib/sequana/rules/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2022-08-08T22:01:17,978 creating build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2022-08-08T22:01:17,980 copying build/lib/sequana/rules/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2022-08-08T22:01:17,984 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2022-08-08T22:01:17,986 copying build/lib/sequana/rules/bwa_index/bwa_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2022-08-08T22:01:17,990 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2022-08-08T22:01:17,991 copying build/lib/sequana/rules/fastqc/fastqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2022-08-08T22:01:17,996 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2022-08-08T22:01:17,997 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2022-08-08T22:01:18,002 creating build/bdist.linux-armv7l/wheel/sequana/rules/spades 2022-08-08T22:01:18,003 copying build/lib/sequana/rules/spades/spades.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spades 2022-08-08T22:01:18,007 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2022-08-08T22:01:18,009 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2022-08-08T22:01:18,013 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2022-08-08T22:01:18,015 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2022-08-08T22:01:18,020 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken 2022-08-08T22:01:18,022 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2022-08-08T22:01:18,024 copying build/lib/sequana/rules/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2022-08-08T22:01:18,029 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2022-08-08T22:01:18,030 copying build/lib/sequana/rules/kraken/2.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2022-08-08T22:01:18,034 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2022-08-08T22:01:18,036 copying build/lib/sequana/rules/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2022-08-08T22:01:18,041 creating build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2022-08-08T22:01:18,042 copying build/lib/sequana/rules/sequana_coverage/sequana_coverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2022-08-08T22:01:18,047 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2022-08-08T22:01:18,048 copying build/lib/sequana/rules/Utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2022-08-08T22:01:18,052 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes 2022-08-08T22:01:18,054 copying build/lib/sequana/rules/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes 2022-08-08T22:01:18,058 creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2022-08-08T22:01:18,059 copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2022-08-08T22:01:18,064 creating build/bdist.linux-armv7l/wheel/sequana/rules/quast 2022-08-08T22:01:18,066 copying build/lib/sequana/rules/quast/quast.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/quast 2022-08-08T22:01:18,070 creating build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2022-08-08T22:01:18,072 copying build/lib/sequana/rules/tophat_mapping/tophat_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2022-08-08T22:01:18,076 creating build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2022-08-08T22:01:18,078 copying build/lib/sequana/rules/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2022-08-08T22:01:18,082 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2022-08-08T22:01:18,083 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2022-08-08T22:01:18,088 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2022-08-08T22:01:18,089 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2022-08-08T22:01:18,094 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2022-08-08T22:01:18,095 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2022-08-08T22:01:18,099 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2022-08-08T22:01:18,101 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2022-08-08T22:01:18,105 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2022-08-08T22:01:18,106 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2022-08-08T22:01:18,111 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2022-08-08T22:01:18,112 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2022-08-08T22:01:18,117 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2022-08-08T22:01:18,118 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2022-08-08T22:01:18,123 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_vcf_filter 2022-08-08T22:01:18,124 copying build/lib/sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_vcf_filter 2022-08-08T22:01:18,129 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2022-08-08T22:01:18,131 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2022-08-08T22:01:18,135 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2022-08-08T22:01:18,136 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2022-08-08T22:01:18,140 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,146 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,151 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,156 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,162 copying build/lib/sequana/macs3.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,167 creating build/bdist.linux-armv7l/wheel/sequana/viz 2022-08-08T22:01:18,170 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-08-08T22:01:18,175 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-08-08T22:01:18,179 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-08-08T22:01:18,184 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-08-08T22:01:18,187 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-08-08T22:01:18,191 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-08-08T22:01:18,196 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-08-08T22:01:18,199 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-08-08T22:01:18,203 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-08-08T22:01:18,207 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-08-08T22:01:18,210 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-08-08T22:01:18,214 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-08-08T22:01:18,219 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-08-08T22:01:18,223 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-08-08T22:01:18,227 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-08-08T22:01:18,232 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-08-08T22:01:18,235 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-08-08T22:01:18,240 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-08-08T22:01:18,243 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,247 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,252 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,257 copying build/lib/sequana/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,262 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,269 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,274 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,278 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,282 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,287 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,292 creating build/bdist.linux-armv7l/wheel/sequana/plots 2022-08-08T22:01:18,294 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2022-08-08T22:01:18,297 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2022-08-08T22:01:18,301 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2022-08-08T22:01:18,306 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,310 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,317 creating build/bdist.linux-armv7l/wheel/sequana/resources 2022-08-08T22:01:18,320 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2022-08-08T22:01:18,322 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2022-08-08T22:01:18,325 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2022-08-08T22:01:18,330 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2022-08-08T22:01:18,334 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-08-08T22:01:18,335 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-08-08T22:01:18,341 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-08-08T22:01:18,344 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-08-08T22:01:18,347 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-08-08T22:01:18,352 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-08-08T22:01:18,354 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-08-08T22:01:18,357 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-08-08T22:01:18,365 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-08-08T22:01:18,369 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-08-08T22:01:18,378 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-08-08T22:01:18,396 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-08-08T22:01:18,404 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-08-08T22:01:18,407 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-08-08T22:01:18,415 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-08-08T22:01:18,418 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-08-08T22:01:18,424 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-08-08T22:01:18,429 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-08-08T22:01:18,444 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-08-08T22:01:18,449 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-08-08T22:01:18,455 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc 2022-08-08T22:01:18,456 copying build/lib/sequana/resources/doc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2022-08-08T22:01:18,461 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2022-08-08T22:01:18,462 copying build/lib/sequana/resources/doc/rnadiff_compare/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2022-08-08T22:01:18,466 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2022-08-08T22:01:18,467 copying build/lib/sequana/resources/doc/rnaseq_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2022-08-08T22:01:18,471 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2022-08-08T22:01:18,472 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2022-08-08T22:01:18,476 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2022-08-08T22:01:18,477 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2022-08-08T22:01:18,481 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2022-08-08T22:01:18,483 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2022-08-08T22:01:18,486 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2022-08-08T22:01:18,488 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2022-08-08T22:01:18,492 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-08-08T22:01:18,493 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-08-08T22:01:18,496 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-08-08T22:01:18,500 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-08-08T22:01:18,503 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-08-08T22:01:18,506 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-08-08T22:01:18,511 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-08-08T22:01:18,512 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-08-08T22:01:18,517 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-08-08T22:01:18,520 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-08-08T22:01:18,533 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-08-08T22:01:18,538 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-08-08T22:01:18,542 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-08-08T22:01:18,547 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,548 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,552 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,597 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,600 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,604 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,625 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,627 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,631 copying build/lib/sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,634 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,637 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,662 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,665 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,669 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,672 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,677 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,680 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,683 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,686 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,690 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-08-08T22:01:18,695 creating build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-08-08T22:01:18,696 copying build/lib/sequana/resources/examples/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-08-08T22:01:18,700 copying build/lib/sequana/resources/examples/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-08-08T22:01:18,703 copying build/lib/sequana/resources/examples/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-08-08T22:01:18,707 copying build/lib/sequana/resources/examples/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-08-08T22:01:18,712 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-08-08T22:01:18,714 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-08-08T22:01:18,719 copying build/lib/sequana/resources/data/panther.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-08-08T22:01:18,723 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-08-08T22:01:18,726 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-08-08T22:01:18,729 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-08-08T22:01:18,739 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-08-08T22:01:18,760 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-08-08T22:01:18,764 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-08-08T22:01:18,773 copying build/lib/sequana/resources/data/kegg.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-08-08T22:01:18,798 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2022-08-08T22:01:18,799 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2022-08-08T22:01:18,802 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2022-08-08T22:01:18,806 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,809 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,816 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,821 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-08-08T22:01:18,822 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-08-08T22:01:18,827 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-08-08T22:01:18,830 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-08-08T22:01:18,833 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-08-08T22:01:18,836 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-08-08T22:01:18,841 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-08-08T22:01:18,845 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-08-08T22:01:18,849 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-08-08T22:01:18,853 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-08-08T22:01:18,857 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-08-08T22:01:18,861 copying build/lib/sequana/multiqc/plots.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-08-08T22:01:18,864 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-08-08T22:01:18,868 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-08-08T22:01:18,872 copying build/lib/sequana/gtf.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,876 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,882 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,885 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,889 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,892 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,897 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,902 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,906 creating build/bdist.linux-armv7l/wheel/sequana/utils 2022-08-08T22:01:18,907 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-08-08T22:01:18,912 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-08-08T22:01:18,915 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-08-08T22:01:18,919 copying build/lib/sequana/utils/singleton.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-08-08T22:01:18,922 copying build/lib/sequana/utils/df2html.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-08-08T22:01:18,925 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-08-08T22:01:18,929 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,933 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,937 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,941 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,945 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,952 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,956 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,959 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,964 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,968 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,972 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,976 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,980 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,984 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:18,989 creating build/bdist.linux-armv7l/wheel/sequana/kraken 2022-08-08T22:01:18,990 copying build/lib/sequana/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2022-08-08T22:01:18,993 copying build/lib/sequana/kraken/analysis.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2022-08-08T22:01:19,000 copying build/lib/sequana/kraken/multikraken.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2022-08-08T22:01:19,004 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:19,008 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:19,011 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:19,016 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,018 copying build/lib/sequana/modules_report/kegg_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,022 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,027 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,030 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,034 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,038 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,043 copying build/lib/sequana/modules_report/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,047 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,051 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,055 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,059 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,063 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,067 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,072 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,075 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,079 copying build/lib/sequana/modules_report/trf.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,082 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,086 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,089 copying build/lib/sequana/modules_report/panther_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,093 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,097 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-08-08T22:01:19,101 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:19,105 creating build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-08-08T22:01:19,107 copying build/lib/sequana/enrichment/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-08-08T22:01:19,110 copying build/lib/sequana/enrichment/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-08-08T22:01:19,114 copying build/lib/sequana/enrichment/gsea.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-08-08T22:01:19,117 copying build/lib/sequana/enrichment/kegg.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-08-08T22:01:19,122 copying build/lib/sequana/enrichment/mart.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-08-08T22:01:19,126 copying build/lib/sequana/enrichment/ontology.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-08-08T22:01:19,129 copying build/lib/sequana/enrichment/plot_go_terms.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-08-08T22:01:19,133 copying build/lib/sequana/enrichment/panther.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-08-08T22:01:19,138 copying build/lib/sequana/enrichment/quickgo.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-08-08T22:01:19,141 copying build/lib/sequana/chipseq.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:19,147 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:19,151 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:19,155 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:19,159 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:19,162 copying build/lib/sequana/jsontool.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:19,166 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:19,170 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:19,174 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2022-08-08T22:01:19,177 running install_egg_info 2022-08-08T22:01:20,664 running egg_info 2022-08-08T22:01:21,386 writing sequana.egg-info/PKG-INFO 2022-08-08T22:01:21,976 writing dependency_links to sequana.egg-info/dependency_links.txt 2022-08-08T22:01:23,801 writing entry points to sequana.egg-info/entry_points.txt 2022-08-08T22:01:24,987 writing requirements to sequana.egg-info/requires.txt 2022-08-08T22:01:25,583 writing top-level names to sequana.egg-info/top_level.txt 2022-08-08T22:01:26,196 reading manifest file 'sequana.egg-info/SOURCES.txt' 2022-08-08T22:01:26,229 reading manifest template 'MANIFEST.in' 2022-08-08T22:01:26,236 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-08-08T22:01:26,240 warning: no previously-included files matching '*pyc' found under directory '*' 2022-08-08T22:01:27,399 warning: no files found matching 'test/requirements*txt' 2022-08-08T22:01:27,403 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2022-08-08T22:01:27,406 warning: no previously-included files matching '*' found under directory 'test' 2022-08-08T22:01:27,410 warning: no previously-included files matching '*' found under directory 'doc' 2022-08-08T22:01:27,413 warning: no previously-included files found matching 'sequana/rm2.py' 2022-08-08T22:01:27,413 adding license file 'LICENSE' 2022-08-08T22:01:27,466 writing manifest file 'sequana.egg-info/SOURCES.txt' 2022-08-08T22:01:27,470 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.14.2-py3.7.egg-info 2022-08-08T22:01:27,498 running install_scripts 2022-08-08T22:01:27,797 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-08-08T22:01:27,807 creating build/bdist.linux-armv7l/wheel/sequana-0.14.2.dist-info/WHEEL 2022-08-08T22:01:27,812 creating '/tmp/pip-wheel-dcv69lru/sequana-0.14.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-08-08T22:01:27,816 adding 'sequana/__init__.py' 2022-08-08T22:01:27,820 adding 'sequana/assembly.py' 2022-08-08T22:01:27,839 adding 'sequana/bamtools.py' 2022-08-08T22:01:27,843 adding 'sequana/bed.py' 2022-08-08T22:01:27,867 adding 'sequana/bedtools.py' 2022-08-08T22:01:27,872 adding 'sequana/canu_scanner.py' 2022-08-08T22:01:27,882 adding 'sequana/chipseq.py' 2022-08-08T22:01:27,886 adding 'sequana/cigar.py' 2022-08-08T22:01:27,888 adding 'sequana/cnv.py' 2022-08-08T22:01:27,893 adding 'sequana/compare.py' 2022-08-08T22:01:27,897 adding 'sequana/contigs.py' 2022-08-08T22:01:27,902 adding 'sequana/coverage.py' 2022-08-08T22:01:27,904 adding 'sequana/cpg_islands.py' 2022-08-08T22:01:27,907 adding 'sequana/criteria.py' 2022-08-08T22:01:27,912 adding 'sequana/databases.py' 2022-08-08T22:01:27,915 adding 'sequana/datatools.py' 2022-08-08T22:01:27,919 adding 'sequana/demultiplex.py' 2022-08-08T22:01:27,921 adding 'sequana/errors.py' 2022-08-08T22:01:27,925 adding 'sequana/fasta.py' 2022-08-08T22:01:27,938 adding 'sequana/fastq.py' 2022-08-08T22:01:27,942 adding 'sequana/fastqc.py' 2022-08-08T22:01:27,947 adding 'sequana/featurecounts.py' 2022-08-08T22:01:27,951 adding 'sequana/find_motif.py' 2022-08-08T22:01:27,954 adding 'sequana/freebayes_bcf_filter.py' 2022-08-08T22:01:27,959 adding 'sequana/freebayes_vcf_filter.py' 2022-08-08T22:01:27,962 adding 'sequana/genbank.py' 2022-08-08T22:01:27,968 adding 'sequana/gff3.py' 2022-08-08T22:01:27,971 adding 'sequana/gtf.py' 2022-08-08T22:01:27,976 adding 'sequana/iem.py' 2022-08-08T22:01:27,983 adding 'sequana/isoseq.py' 2022-08-08T22:01:27,986 adding 'sequana/itol.py' 2022-08-08T22:01:27,989 adding 'sequana/iuapc.py' 2022-08-08T22:01:27,991 adding 'sequana/jsontool.py' 2022-08-08T22:01:27,994 adding 'sequana/kegg.py' 2022-08-08T22:01:27,996 adding 'sequana/kmer.py' 2022-08-08T22:01:27,999 adding 'sequana/krona.py' 2022-08-08T22:01:28,001 adding 'sequana/lazy.py' 2022-08-08T22:01:28,004 adding 'sequana/lazyimports.py' 2022-08-08T22:01:28,007 adding 'sequana/macs3.py' 2022-08-08T22:01:28,010 adding 'sequana/mgi.py' 2022-08-08T22:01:28,013 adding 'sequana/mh.py' 2022-08-08T22:01:28,015 adding 'sequana/misc.py' 2022-08-08T22:01:28,020 adding 'sequana/mixture.py' 2022-08-08T22:01:28,031 adding 'sequana/pacbio.py' 2022-08-08T22:01:28,036 adding 'sequana/pacbio_amplicon.py' 2022-08-08T22:01:28,039 adding 'sequana/phred.py' 2022-08-08T22:01:28,042 adding 'sequana/protein.py' 2022-08-08T22:01:28,046 adding 'sequana/ribodesigner.py' 2022-08-08T22:01:28,060 adding 'sequana/rnadiff.py' 2022-08-08T22:01:28,064 adding 'sequana/running_median.py' 2022-08-08T22:01:28,068 adding 'sequana/salmon.py' 2022-08-08T22:01:28,078 adding 'sequana/sequence.py' 2022-08-08T22:01:28,081 adding 'sequana/sniffer.py' 2022-08-08T22:01:28,085 adding 'sequana/snpeff.py' 2022-08-08T22:01:28,088 adding 'sequana/stats.py' 2022-08-08T22:01:28,091 adding 'sequana/summary.py' 2022-08-08T22:01:28,096 adding 'sequana/taxonomy.py' 2022-08-08T22:01:28,103 adding 'sequana/tools.py' 2022-08-08T22:01:28,106 adding 'sequana/trf.py' 2022-08-08T22:01:28,111 adding 'sequana/vcf_filter.py' 2022-08-08T22:01:28,114 adding 'sequana/vcftools.py' 2022-08-08T22:01:28,117 adding 'sequana/vst.py' 2022-08-08T22:01:28,120 adding 'sequana/enrichment/__init__.py' 2022-08-08T22:01:28,122 adding 'sequana/enrichment/gsea.py' 2022-08-08T22:01:28,129 adding 'sequana/enrichment/kegg.py' 2022-08-08T22:01:28,132 adding 'sequana/enrichment/mart.py' 2022-08-08T22:01:28,134 adding 'sequana/enrichment/ontology.py' 2022-08-08T22:01:28,140 adding 'sequana/enrichment/panther.py' 2022-08-08T22:01:28,145 adding 'sequana/enrichment/plot_go_terms.py' 2022-08-08T22:01:28,148 adding 'sequana/enrichment/quickgo.py' 2022-08-08T22:01:28,153 adding 'sequana/enrichment/uniprot_enrichment.py' 2022-08-08T22:01:28,156 adding 'sequana/kraken/__init__.py' 2022-08-08T22:01:28,170 adding 'sequana/kraken/analysis.py' 2022-08-08T22:01:28,174 adding 'sequana/kraken/multikraken.py' 2022-08-08T22:01:28,177 adding 'sequana/modules_report/__init__.py' 2022-08-08T22:01:28,180 adding 'sequana/modules_report/bamqc.py' 2022-08-08T22:01:28,184 adding 'sequana/modules_report/base_module.py' 2022-08-08T22:01:28,187 adding 'sequana/modules_report/bwa_bam_to_fastq.py' 2022-08-08T22:01:28,194 adding 'sequana/modules_report/coverage.py' 2022-08-08T22:01:28,200 adding 'sequana/modules_report/cutadapt.py' 2022-08-08T22:01:28,204 adding 'sequana/modules_report/fastq_stats.py' 2022-08-08T22:01:28,206 adding 'sequana/modules_report/fastqc.py' 2022-08-08T22:01:28,209 adding 'sequana/modules_report/joint_calling.py' 2022-08-08T22:01:28,212 adding 'sequana/modules_report/kegg_enrichment.py' 2022-08-08T22:01:28,216 adding 'sequana/modules_report/kraken.py' 2022-08-08T22:01:28,220 adding 'sequana/modules_report/multi_summary.py' 2022-08-08T22:01:28,224 adding 'sequana/modules_report/pacbio_input_bam.py' 2022-08-08T22:01:28,227 adding 'sequana/modules_report/panther_enrichment.py' 2022-08-08T22:01:28,231 adding 'sequana/modules_report/phix.py' 2022-08-08T22:01:28,233 adding 'sequana/modules_report/quast.py' 2022-08-08T22:01:28,239 adding 'sequana/modules_report/rnadiff.py' 2022-08-08T22:01:28,243 adding 'sequana/modules_report/summary.py' 2022-08-08T22:01:28,246 adding 'sequana/modules_report/trf.py' 2022-08-08T22:01:28,249 adding 'sequana/modules_report/uniprot_enrichment.py' 2022-08-08T22:01:28,252 adding 'sequana/modules_report/variant_calling.py' 2022-08-08T22:01:28,255 adding 'sequana/multiqc/__init__.py' 2022-08-08T22:01:28,259 adding 'sequana/multiqc/bamtools_stats.py' 2022-08-08T22:01:28,261 adding 'sequana/multiqc/config.py' 2022-08-08T22:01:28,264 adding 'sequana/multiqc/coverage.py' 2022-08-08T22:01:28,268 adding 'sequana/multiqc/isoseq.py' 2022-08-08T22:01:28,271 adding 'sequana/multiqc/isoseq_qc.py' 2022-08-08T22:01:28,274 adding 'sequana/multiqc/kraken.py' 2022-08-08T22:01:28,277 adding 'sequana/multiqc/laa.py' 2022-08-08T22:01:28,280 adding 'sequana/multiqc/multiqc_config.yaml' 2022-08-08T22:01:28,283 adding 'sequana/multiqc/pacbio_amplicon.py' 2022-08-08T22:01:28,286 adding 'sequana/multiqc/pacbio_qc.py' 2022-08-08T22:01:28,289 adding 'sequana/multiqc/plots.py' 2022-08-08T22:01:28,292 adding 'sequana/multiqc/quality_control.py' 2022-08-08T22:01:28,294 adding 'sequana/plots/__init__.py' 2022-08-08T22:01:28,297 adding 'sequana/plots/canvasjs_base.py' 2022-08-08T22:01:28,301 adding 'sequana/plots/canvasjs_linegraph.py' 2022-08-08T22:01:28,303 adding 'sequana/resources/__init__.py' 2022-08-08T22:01:28,306 adding 'sequana/resources/canvas/__init__.py' 2022-08-08T22:01:28,309 adding 'sequana/resources/canvas/bar.py' 2022-08-08T22:01:28,311 adding 'sequana/resources/css/__init__.py' 2022-08-08T22:01:28,335 adding 'sequana/resources/css/bootstrap.min.css' 2022-08-08T22:01:28,340 adding 'sequana/resources/css/buttons.dataTables.min.css' 2022-08-08T22:01:28,344 adding 'sequana/resources/css/jquery.dataTables.min.css' 2022-08-08T22:01:28,347 adding 'sequana/resources/css/jquery.dropdown.min.css' 2022-08-08T22:01:28,349 adding 'sequana/resources/css/report.css' 2022-08-08T22:01:28,381 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz' 2022-08-08T22:01:28,414 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz' 2022-08-08T22:01:28,419 adding 'sequana/resources/data/README.rst' 2022-08-08T22:01:28,422 adding 'sequana/resources/data/__init__.py' 2022-08-08T22:01:28,566 adding 'sequana/resources/data/kegg.csv' 2022-08-08T22:01:28,591 adding 'sequana/resources/data/measles.fa' 2022-08-08T22:01:28,595 adding 'sequana/resources/data/panther.csv' 2022-08-08T22:01:28,600 adding 'sequana/resources/data/phiX174.fa' 2022-08-08T22:01:28,748 adding 'sequana/resources/data/virus.bed' 2022-08-08T22:01:28,756 adding 'sequana/resources/doc/__init__.py' 2022-08-08T22:01:28,759 adding 'sequana/resources/doc/rnadiff_compare/__init__.py' 2022-08-08T22:01:28,762 adding 'sequana/resources/doc/rnaseq_0/__init__.py' 2022-08-08T22:01:28,764 adding 'sequana/resources/doc/rnaseq_0/sample1/__init__.py' 2022-08-08T22:01:28,767 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py' 2022-08-08T22:01:28,769 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py' 2022-08-08T22:01:28,772 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py' 2022-08-08T22:01:28,775 adding 'sequana/resources/examples/README.rst' 2022-08-08T22:01:28,777 adding 'sequana/resources/examples/__init__.py' 2022-08-08T22:01:28,782 adding 'sequana/resources/examples/test.fastq.gz' 2022-08-08T22:01:28,785 adding 'sequana/resources/examples/test_kraken.out' 2022-08-08T22:01:28,797 adding 'sequana/resources/images/Institut_Pasteur.png' 2022-08-08T22:01:28,800 adding 'sequana/resources/images/__init__.py' 2022-08-08T22:01:28,803 adding 'sequana/resources/images/no_data.jpg' 2022-08-08T22:01:28,806 adding 'sequana/resources/images/no_data.png' 2022-08-08T22:01:28,809 adding 'sequana/resources/js/__init__.py' 2022-08-08T22:01:28,819 adding 'sequana/resources/js/bootstrap.min.js' 2022-08-08T22:01:28,825 adding 'sequana/resources/js/buttons.html5.min.js' 2022-08-08T22:01:28,828 adding 'sequana/resources/js/buttons.print.min.js' 2022-08-08T22:01:28,882 adding 'sequana/resources/js/canvasjs.min.js' 2022-08-08T22:01:28,892 adding 'sequana/resources/js/dataTables.buttons.min.js' 2022-08-08T22:01:28,993 adding 'sequana/resources/js/jquery-2.1.1.js' 2022-08-08T22:01:29,027 adding 'sequana/resources/js/jquery-3.1.1.min.js' 2022-08-08T22:01:29,058 adding 'sequana/resources/js/jquery-3.2.1.min.js' 2022-08-08T22:01:29,090 adding 'sequana/resources/js/jquery-3.5.1.min.js' 2022-08-08T22:01:29,120 adding 'sequana/resources/js/jquery.dataTables.min.js' 2022-08-08T22:01:29,124 adding 'sequana/resources/js/jquery.dropdown.min.js' 2022-08-08T22:01:29,126 adding 'sequana/resources/js/jquery.tocPlugin.js' 2022-08-08T22:01:29,131 adding 'sequana/resources/js/papaparse.min.js' 2022-08-08T22:01:29,134 adding 'sequana/resources/snpeff/__init__.py' 2022-08-08T22:01:29,137 adding 'sequana/resources/snpeff/snpEff.config' 2022-08-08T22:01:29,140 adding 'sequana/resources/templates/__init__.py' 2022-08-08T22:01:29,142 adding 'sequana/resources/templates/base.html' 2022-08-08T22:01:29,145 adding 'sequana/resources/templates/joint_calling.html' 2022-08-08T22:01:29,148 adding 'sequana/resources/templates/rnadiff_light_template.R' 2022-08-08T22:01:29,150 adding 'sequana/resources/templates/standard.html' 2022-08-08T22:01:29,153 adding 'sequana/resources/testing/README.rst' 2022-08-08T22:01:29,156 adding 'sequana/resources/testing/__init__.py' 2022-08-08T22:01:29,158 adding 'sequana/resources/testing/adapters_with_duplicates.fa' 2022-08-08T22:01:29,176 adding 'sequana/resources/testing/test.fasta' 2022-08-08T22:01:29,207 adding 'sequana/resources/testing/test_blast_ebi.xml' 2022-08-08T22:01:29,218 adding 'sequana/resources/testing/test_blast_local.xml' 2022-08-08T22:01:29,299 adding 'sequana/resources/testing/test_coverage.csv' 2022-08-08T22:01:29,308 adding 'sequana/resources/testing/test_dag.ann.dot' 2022-08-08T22:01:29,310 adding 'sequana/resources/testing/test_expdesign_Hm2.csv' 2022-08-08T22:01:29,312 adding 'sequana/resources/testing/test_expdesign_generic.csv' 2022-08-08T22:01:29,314 adding 'sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv' 2022-08-08T22:01:29,316 adding 'sequana/resources/testing/test_expdesign_miseq_illumina.csv' 2022-08-08T22:01:29,318 adding 'sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed' 2022-08-08T22:01:29,321 adding 'sequana/resources/testing/test_expdesign_rubicon.csv' 2022-08-08T22:01:29,323 adding 'sequana/resources/testing/test_index_mapper.csv' 2022-08-08T22:01:29,325 adding 'sequana/resources/testing/test_kraken.out.summary' 2022-08-08T22:01:29,327 adding 'sequana/resources/testing/test_samplesheet_wrong_characters.csv' 2022-08-08T22:01:29,883 adding 'sequana/resources/testing/test_snpeff_ref.gb' 2022-08-08T22:01:29,899 adding 'sequana/resources/testing/test_taxon_rtd.csv' 2022-08-08T22:01:29,902 adding 'sequana/rules/README.rst' 2022-08-08T22:01:29,904 adding 'sequana/rules/__init__.py' 2022-08-08T22:01:29,907 adding 'sequana/rules/DupRadar/DupRadar.rules' 2022-08-08T22:01:29,910 adding 'sequana/rules/Pacbio/__init__.py' 2022-08-08T22:01:29,913 adding 'sequana/rules/SARTools/SARTools.rules' 2022-08-08T22:01:29,916 adding 'sequana/rules/SnpEff/__init__.py' 2022-08-08T22:01:29,919 adding 'sequana/rules/SnpEff/snpeff/1.0/snpeff.rules' 2022-08-08T22:01:29,922 adding 'sequana/rules/SnpEff/snpeff/1.1/snpeff.rules' 2022-08-08T22:01:29,926 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules' 2022-08-08T22:01:29,929 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules' 2022-08-08T22:01:29,932 adding 'sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules' 2022-08-08T22:01:29,935 adding 'sequana/rules/Utils/__init__.py' 2022-08-08T22:01:29,937 adding 'sequana/rules/bamCoverage/bamCoverage.rules' 2022-08-08T22:01:29,940 adding 'sequana/rules/bam_quality_filter/bam_quality_filter.rules' 2022-08-08T22:01:29,943 adding 'sequana/rules/bed_to_gff/bed_to_gff.rules' 2022-08-08T22:01:29,946 adding 'sequana/rules/bowtie2_index/bowtie2_index.rules' 2022-08-08T22:01:29,949 adding 'sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules' 2022-08-08T22:01:29,952 adding 'sequana/rules/bwa_index/bwa_index.rules' 2022-08-08T22:01:29,955 adding 'sequana/rules/canu/canu.rules' 2022-08-08T22:01:29,957 adding 'sequana/rules/codecs/__init__.py' 2022-08-08T22:01:29,960 adding 'sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules' 2022-08-08T22:01:29,963 adding 'sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules' 2022-08-08T22:01:29,966 adding 'sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules' 2022-08-08T22:01:29,969 adding 'sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules' 2022-08-08T22:01:29,971 adding 'sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules' 2022-08-08T22:01:29,974 adding 'sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules' 2022-08-08T22:01:29,977 adding 'sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules' 2022-08-08T22:01:29,980 adding 'sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules' 2022-08-08T22:01:29,983 adding 'sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules' 2022-08-08T22:01:29,985 adding 'sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules' 2022-08-08T22:01:29,989 adding 'sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules' 2022-08-08T22:01:29,991 adding 'sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules' 2022-08-08T22:01:29,994 adding 'sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules' 2022-08-08T22:01:29,997 adding 'sequana/rules/copy_multiple_files/copy_multiple_files.rules' 2022-08-08T22:01:30,000 adding 'sequana/rules/cutadapt/cutadapt.rules' 2022-08-08T22:01:30,004 adding 'sequana/rules/dag/dag.rules' 2022-08-08T22:01:30,006 adding 'sequana/rules/deeptools/__init__.py' 2022-08-08T22:01:30,009 adding 'sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules' 2022-08-08T22:01:30,012 adding 'sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules' 2022-08-08T22:01:30,015 adding 'sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules' 2022-08-08T22:01:30,018 adding 'sequana/rules/deeptools/plotCoverage/plotCoverage.rules' 2022-08-08T22:01:30,021 adding 'sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules' 2022-08-08T22:01:30,024 adding 'sequana/rules/falco/falco.rules' 2022-08-08T22:01:30,027 adding 'sequana/rules/fastp/fastp.rules' 2022-08-08T22:01:30,030 adding 'sequana/rules/fastq_sampling/fastq_sampling.rules' 2022-08-08T22:01:30,033 adding 'sequana/rules/fastq_screen/fastq_screen.rules' 2022-08-08T22:01:30,036 adding 'sequana/rules/fastq_screen_report/fastq_screen_report.rules' 2022-08-08T22:01:30,039 adding 'sequana/rules/fastqc/fastqc.rules' 2022-08-08T22:01:30,042 adding 'sequana/rules/feature_counts/feature_counts.rules' 2022-08-08T22:01:30,045 adding 'sequana/rules/format_contigs/format_contigs.rules' 2022-08-08T22:01:30,048 adding 'sequana/rules/freebayes/freebayes.rules' 2022-08-08T22:01:30,051 adding 'sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules' 2022-08-08T22:01:30,054 adding 'sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules' 2022-08-08T22:01:30,056 adding 'sequana/rules/idr/__init__.py' 2022-08-08T22:01:30,060 adding 'sequana/rules/idr/compute_idr/compute_idr.rules' 2022-08-08T22:01:30,063 adding 'sequana/rules/idr/intersectionApproach/intersectionApproach.rules' 2022-08-08T22:01:30,066 adding 'sequana/rules/idr/metrics_peaks/metrics_peaks.rules' 2022-08-08T22:01:30,070 adding 'sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules' 2022-08-08T22:01:30,073 adding 'sequana/rules/idr/select_peaks/select_peaks.rules' 2022-08-08T22:01:30,076 adding 'sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules' 2022-08-08T22:01:30,079 adding 'sequana/rules/idr/union_peaks/union_peaks.rules' 2022-08-08T22:01:30,082 adding 'sequana/rules/igvtools/igvtools.rules' 2022-08-08T22:01:30,085 adding 'sequana/rules/indel_realigner/indel_realigner.rules' 2022-08-08T22:01:30,088 adding 'sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules' 2022-08-08T22:01:30,092 adding 'sequana/rules/kraken/1.0/kraken.rules' 2022-08-08T22:01:30,095 adding 'sequana/rules/kraken/1.1/kraken.rules' 2022-08-08T22:01:30,099 adding 'sequana/rules/kraken/2.0/kraken.rules' 2022-08-08T22:01:30,102 adding 'sequana/rules/mapping_analysis/mapping_analysis.rules' 2022-08-08T22:01:30,105 adding 'sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules' 2022-08-08T22:01:30,108 adding 'sequana/rules/multiqc/multiqc.rules' 2022-08-08T22:01:30,111 adding 'sequana/rules/multiqc/2.0/multiqc.rules' 2022-08-08T22:01:30,114 adding 'sequana/rules/multiqc2/multiqc2.rules' 2022-08-08T22:01:30,117 adding 'sequana/rules/pacbio_quality/pacbio_quality.rules' 2022-08-08T22:01:30,120 adding 'sequana/rules/picard-tools/__init__.py' 2022-08-08T22:01:30,122 adding 'sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules' 2022-08-08T22:01:30,125 adding 'sequana/rules/picard-tools/add_read_group/add_read_group.rules' 2022-08-08T22:01:30,128 adding 'sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules' 2022-08-08T22:01:30,131 adding 'sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules' 2022-08-08T22:01:30,134 adding 'sequana/rules/picard-tools/reorderSam/reorderSam.rules' 2022-08-08T22:01:30,137 adding 'sequana/rules/preSARTools/preSARTools.rules' 2022-08-08T22:01:30,141 adding 'sequana/rules/prokka/prokka.rules' 2022-08-08T22:01:30,144 adding 'sequana/rules/quast/quast.rules' 2022-08-08T22:01:30,147 adding 'sequana/rules/revcomp_rule/revcomp_rule.rules' 2022-08-08T22:01:30,150 adding 'sequana/rules/rnaseqc/rnaseqc.rules' 2022-08-08T22:01:30,153 adding 'sequana/rules/rulegraph/rulegraph.rules' 2022-08-08T22:01:30,156 adding 'sequana/rules/salmon_index/salmon_index.rules' 2022-08-08T22:01:30,159 adding 'sequana/rules/salmon_mapping/salmon_mapping.rules' 2022-08-08T22:01:30,162 adding 'sequana/rules/sambamba/__init__.py' 2022-08-08T22:01:30,165 adding 'sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules' 2022-08-08T22:01:30,168 adding 'sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules' 2022-08-08T22:01:30,171 adding 'sequana/rules/samtools_depth/samtools_depth.rules' 2022-08-08T22:01:30,174 adding 'sequana/rules/samtools_sort/samtools_sort.rules' 2022-08-08T22:01:30,178 adding 'sequana/rules/sequana_coverage/sequana_coverage.rules' 2022-08-08T22:01:30,181 adding 'sequana/rules/spades/spades.rules' 2022-08-08T22:01:30,184 adding 'sequana/rules/spades_get_fastq/spades_get_fastq.rules' 2022-08-08T22:01:30,187 adding 'sequana/rules/spikes_counting/spikes_counting.rules' 2022-08-08T22:01:30,190 adding 'sequana/rules/spp/spp.rules' 2022-08-08T22:01:30,193 adding 'sequana/rules/star_index/star_index.rules' 2022-08-08T22:01:30,196 adding 'sequana/rules/star_mapping/star_mapping.rules' 2022-08-08T22:01:30,199 adding 'sequana/rules/summary_pipeline/summary_pipeline.rules' 2022-08-08T22:01:30,202 adding 'sequana/rules/tophat_mapping/tophat_mapping.rules' 2022-08-08T22:01:30,205 adding 'sequana/scripts/__init__.py' 2022-08-08T22:01:30,211 adding 'sequana/scripts/coverage.py' 2022-08-08T22:01:30,214 adding 'sequana/scripts/start_pipeline.py' 2022-08-08T22:01:30,217 adding 'sequana/scripts/substractor.py' 2022-08-08T22:01:30,221 adding 'sequana/scripts/taxonomy.py' 2022-08-08T22:01:30,224 adding 'sequana/scripts/main/__init__.py' 2022-08-08T22:01:30,227 adding 'sequana/scripts/main/biomart.py' 2022-08-08T22:01:30,230 adding 'sequana/scripts/main/enrichment_kegg.py' 2022-08-08T22:01:30,233 adding 'sequana/scripts/main/enrichment_panther.py' 2022-08-08T22:01:30,236 adding 'sequana/scripts/main/enrichment_uniprot.py' 2022-08-08T22:01:30,240 adding 'sequana/scripts/main/fasta.py' 2022-08-08T22:01:30,243 adding 'sequana/scripts/main/fastq.py' 2022-08-08T22:01:30,245 adding 'sequana/scripts/main/feature_count.py' 2022-08-08T22:01:30,247 adding 'sequana/scripts/main/gff_to_gtf.py' 2022-08-08T22:01:30,250 adding 'sequana/scripts/main/gff_to_light_gff.py' 2022-08-08T22:01:30,252 adding 'sequana/scripts/main/gtf_fixer.py' 2022-08-08T22:01:30,255 adding 'sequana/scripts/main/lane_merging.py' 2022-08-08T22:01:30,258 adding 'sequana/scripts/main/main.py' 2022-08-08T22:01:30,261 adding 'sequana/scripts/main/mapping.py' 2022-08-08T22:01:30,263 adding 'sequana/scripts/main/ribodesigner.py' 2022-08-08T22:01:30,268 adding 'sequana/scripts/main/rnadiff.py' 2022-08-08T22:01:30,271 adding 'sequana/scripts/main/rnaseq_compare.py' 2022-08-08T22:01:30,273 adding 'sequana/scripts/main/salmon.py' 2022-08-08T22:01:30,275 adding 'sequana/scripts/main/samplesheet.py' 2022-08-08T22:01:30,278 adding 'sequana/scripts/main/summary.py' 2022-08-08T22:01:30,280 adding 'sequana/scripts/main/taxonomy.py' 2022-08-08T22:01:30,283 adding 'sequana/scripts/main/utils.py' 2022-08-08T22:01:30,285 adding 'sequana/utils/__init__.py' 2022-08-08T22:01:30,288 adding 'sequana/utils/config.py' 2022-08-08T22:01:30,292 adding 'sequana/utils/datatables_js.py' 2022-08-08T22:01:30,295 adding 'sequana/utils/df2html.py' 2022-08-08T22:01:30,297 adding 'sequana/utils/singleton.py' 2022-08-08T22:01:30,300 adding 'sequana/utils/tree.py' 2022-08-08T22:01:30,303 adding 'sequana/viz/__init__.py' 2022-08-08T22:01:30,305 adding 'sequana/viz/anova.py' 2022-08-08T22:01:30,307 adding 'sequana/viz/boxplot.py' 2022-08-08T22:01:30,310 adding 'sequana/viz/clusterisation.py' 2022-08-08T22:01:30,313 adding 'sequana/viz/core.py' 2022-08-08T22:01:30,318 adding 'sequana/viz/corrplot.py' 2022-08-08T22:01:30,322 adding 'sequana/viz/dendogram.py' 2022-08-08T22:01:30,328 adding 'sequana/viz/heatmap.py' 2022-08-08T22:01:30,331 adding 'sequana/viz/hinton.py' 2022-08-08T22:01:30,333 adding 'sequana/viz/hist2d.py' 2022-08-08T22:01:30,336 adding 'sequana/viz/imshow.py' 2022-08-08T22:01:30,339 adding 'sequana/viz/isomap.py' 2022-08-08T22:01:30,341 adding 'sequana/viz/linkage.py' 2022-08-08T22:01:30,344 adding 'sequana/viz/mds.py' 2022-08-08T22:01:30,346 adding 'sequana/viz/pca.py' 2022-08-08T22:01:30,350 adding 'sequana/viz/scatter.py' 2022-08-08T22:01:30,353 adding 'sequana/viz/venn.py' 2022-08-08T22:01:30,356 adding 'sequana/viz/volcano.py' 2022-08-08T22:01:30,361 adding 'sequana-0.14.2.dist-info/LICENSE' 2022-08-08T22:01:30,364 adding 'sequana-0.14.2.dist-info/METADATA' 2022-08-08T22:01:30,366 adding 'sequana-0.14.2.dist-info/WHEEL' 2022-08-08T22:01:30,367 adding 'sequana-0.14.2.dist-info/entry_points.txt' 2022-08-08T22:01:30,369 adding 'sequana-0.14.2.dist-info/top_level.txt' 2022-08-08T22:01:30,378 adding 'sequana-0.14.2.dist-info/RECORD' 2022-08-08T22:01:30,456 removing build/bdist.linux-armv7l/wheel 2022-08-08T22:01:30,940 Building wheel for sequana (setup.py): finished with status 'done' 2022-08-08T22:01:30,997 Created wheel for sequana: filename=sequana-0.14.2-py3-none-any.whl size=1685412 sha256=a1ccbc7a36b8b620852a9531206b05aa3bf2832bf3086a4ef701513540bce434 2022-08-08T22:01:31,000 Stored in directory: /tmp/pip-ephem-wheel-cache-o2tgplwc/wheels/6f/75/53/482af25569f129d2595add7f168231c77c225464e9581405d1 2022-08-08T22:01:31,055 Successfully built sequana 2022-08-08T22:01:31,187 Removed build tracker: '/tmp/pip-build-tracker-_5pou14a'