2022-08-10T14:19:06,088 Created temporary directory: /tmp/pip-ephem-wheel-cache-5d3uhylq 2022-08-10T14:19:06,093 Created temporary directory: /tmp/pip-build-tracker-epqgyccq 2022-08-10T14:19:06,094 Initialized build tracking at /tmp/pip-build-tracker-epqgyccq 2022-08-10T14:19:06,094 Created build tracker: /tmp/pip-build-tracker-epqgyccq 2022-08-10T14:19:06,095 Entered build tracker: /tmp/pip-build-tracker-epqgyccq 2022-08-10T14:19:06,096 Created temporary directory: /tmp/pip-wheel-k3ieb4vo 2022-08-10T14:19:06,169 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-10T14:19:06,178 2 location(s) to search for versions of deeprankcore: 2022-08-10T14:19:06,178 * https://pypi.org/simple/deeprankcore/ 2022-08-10T14:19:06,178 * https://www.piwheels.org/simple/deeprankcore/ 2022-08-10T14:19:06,179 Fetching project page and analyzing links: https://pypi.org/simple/deeprankcore/ 2022-08-10T14:19:06,180 Getting page https://pypi.org/simple/deeprankcore/ 2022-08-10T14:19:06,183 Found index url https://pypi.org/simple 2022-08-10T14:19:06,299 Skipping link: No binaries permitted for deeprankcore: https://files.pythonhosted.org/packages/1d/a2/e4f353040987c859d811deff5995de49580afdd581ce1662401e1e9553a0/deeprankcore-0.1.1-py3-none-any.whl#sha256=1ce746c1e925efc00d0fba2077b0aef63e75ad5a52db46740b9c727ffe4e7ccc (from https://pypi.org/simple/deeprankcore/) (requires-python:>=3.9) 2022-08-10T14:19:06,301 Found link https://files.pythonhosted.org/packages/dd/40/462dcbdcd7d0ce1926151a4d67cfe40f754a7832ddcbc1a13348084fc0b8/deeprankcore-0.1.1.tar.gz#sha256=ace2dea43302aa9a6ec39044c780ec341dac47240df82466a1ba9bd921991f92 (from https://pypi.org/simple/deeprankcore/) (requires-python:>=3.9), version: 0.1.1 2022-08-10T14:19:06,302 Skipping link: No binaries permitted for deeprankcore: https://files.pythonhosted.org/packages/a7/0d/f0e34a37c7cb853921b93dedd2329f834e2e109ff902f6ee24a415da2165/deeprankcore-0.2.0-py3-none-any.whl#sha256=2bb0edf30b0c2aaf2a3964b4823487ba65e7fc1860d29c8a526a8c954545b13f (from https://pypi.org/simple/deeprankcore/) (requires-python:>=3.9) 2022-08-10T14:19:06,303 Found link https://files.pythonhosted.org/packages/66/a2/bf5ec4f42a010009fe3e3673fa811d306286e7b1ce3b1f4795e1387a6926/deeprankcore-0.2.0.tar.gz#sha256=630a3420aa46ff2add9fabfe772d2000b4c9d2617579599a0d9e174ade0f3c9e (from https://pypi.org/simple/deeprankcore/) (requires-python:>=3.9), version: 0.2.0 2022-08-10T14:19:06,304 Fetching project page and analyzing links: https://www.piwheels.org/simple/deeprankcore/ 2022-08-10T14:19:06,305 Getting page https://www.piwheels.org/simple/deeprankcore/ 2022-08-10T14:19:06,307 Found index url https://www.piwheels.org/simple 2022-08-10T14:19:06,537 Skipping link: No binaries permitted for deeprankcore: https://www.piwheels.org/simple/deeprankcore/deeprankcore-0.1.1-py3-none-any.whl#sha256=74863b4997b7e71d4c83a8cbcff019a9ea37dfcd46524b28c036e6414d2e37ad (from https://www.piwheels.org/simple/deeprankcore/) (requires-python:>=3.9) 2022-08-10T14:19:06,538 Skipping link: not a file: https://www.piwheels.org/simple/deeprankcore/ 2022-08-10T14:19:06,539 Skipping link: not a file: https://pypi.org/simple/deeprankcore/ 2022-08-10T14:19:06,583 Given no hashes to check 1 links for project 'deeprankcore': discarding no candidates 2022-08-10T14:19:06,626 Collecting deeprankcore==0.2.0 2022-08-10T14:19:06,630 Created temporary directory: /tmp/pip-unpack-ej5n_qek 2022-08-10T14:19:07,180 Downloading deeprankcore-0.2.0.tar.gz (76 kB) 2022-08-10T14:19:07,578 Added deeprankcore==0.2.0 from https://files.pythonhosted.org/packages/66/a2/bf5ec4f42a010009fe3e3673fa811d306286e7b1ce3b1f4795e1387a6926/deeprankcore-0.2.0.tar.gz#sha256=630a3420aa46ff2add9fabfe772d2000b4c9d2617579599a0d9e174ade0f3c9e to build tracker '/tmp/pip-build-tracker-epqgyccq' 2022-08-10T14:19:07,586 Created temporary directory: /tmp/pip-build-env-vubghpqx 2022-08-10T14:19:07,607 Created temporary directory: /tmp/pip-standalone-pip-eopevfsd 2022-08-10T14:19:09,899 Installing build dependencies: started 2022-08-10T14:19:09,901 Running command pip subprocess to install build dependencies 2022-08-10T14:19:21,130 Using pip 22.1.2 from /tmp/pip-standalone-pip-eopevfsd/__env_pip__.zip/pip (python 3.9) 2022-08-10T14:19:22,790 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-10T14:19:27,237 Collecting setuptools 2022-08-10T14:19:27,537 Using cached https://www.piwheels.org/simple/setuptools/setuptools-63.4.2-py3-none-any.whl (1.2 MB) 2022-08-10T14:19:28,185 Collecting wheel 2022-08-10T14:19:28,219 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-08-10T14:19:35,467 Installing collected packages: wheel, setuptools 2022-08-10T14:19:35,751 Creating /tmp/pip-build-env-vubghpqx/overlay/bin 2022-08-10T14:19:35,756 changing mode of /tmp/pip-build-env-vubghpqx/overlay/bin/wheel to 755 2022-08-10T14:19:41,101 Successfully installed setuptools-63.4.2 wheel-0.37.1 2022-08-10T14:19:41,302 --- Logging error --- 2022-08-10T14:19:41,317 Traceback (most recent call last): 2022-08-10T14:19:41,318 File "/tmp/pip-standalone-pip-eopevfsd/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-08-10T14:19:41,318 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-08-10T14:19:41,319 File "/tmp/pip-standalone-pip-eopevfsd/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-08-10T14:19:41,319 extend(render(renderable, render_options)) 2022-08-10T14:19:41,320 File "/tmp/pip-standalone-pip-eopevfsd/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-08-10T14:19:41,320 for render_output in iter_render: 2022-08-10T14:19:41,320 File "/tmp/pip-standalone-pip-eopevfsd/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-08-10T14:19:41,321 for line in lines: 2022-08-10T14:19:41,321 File "/tmp/pip-standalone-pip-eopevfsd/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-08-10T14:19:41,321 for segment in segments: 2022-08-10T14:19:41,321 File "/tmp/pip-standalone-pip-eopevfsd/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-08-10T14:19:41,322 renderable = rich_cast(renderable) 2022-08-10T14:19:41,322 File "/tmp/pip-standalone-pip-eopevfsd/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-08-10T14:19:41,323 renderable = cast_method() 2022-08-10T14:19:41,323 File "/tmp/pip-standalone-pip-eopevfsd/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-08-10T14:19:41,323 pip_cmd = get_best_invocation_for_this_pip() 2022-08-10T14:19:41,324 File "/tmp/pip-standalone-pip-eopevfsd/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip 2022-08-10T14:19:41,324 if found_executable and os.path.samefile( 2022-08-10T14:19:41,324 File "/usr/lib/python3.9/genericpath.py", line 101, in samefile 2022-08-10T14:19:41,325 s2 = os.stat(f2) 2022-08-10T14:19:41,325 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9' 2022-08-10T14:19:41,325 Call stack: 2022-08-10T14:19:41,328 File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main 2022-08-10T14:19:41,329 return _run_code(code, main_globals, None, 2022-08-10T14:19:41,329 File "/usr/lib/python3.9/runpy.py", line 87, in _run_code 2022-08-10T14:19:41,329 exec(code, run_globals) 2022-08-10T14:19:41,330 File "/tmp/pip-standalone-pip-eopevfsd/__env_pip__.zip/pip/__main__.py", line 31, in 2022-08-10T14:19:41,330 sys.exit(_main()) 2022-08-10T14:19:41,330 File "/tmp/pip-standalone-pip-eopevfsd/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-08-10T14:19:41,331 return command.main(cmd_args) 2022-08-10T14:19:41,331 File "/tmp/pip-standalone-pip-eopevfsd/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-08-10T14:19:41,331 return self._main(args) 2022-08-10T14:19:41,332 File "/tmp/pip-standalone-pip-eopevfsd/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-08-10T14:19:41,332 self.handle_pip_version_check(options) 2022-08-10T14:19:41,332 File "/tmp/pip-standalone-pip-eopevfsd/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-08-10T14:19:41,333 pip_self_version_check(session, options) 2022-08-10T14:19:41,333 File "/tmp/pip-standalone-pip-eopevfsd/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-08-10T14:19:41,333 logger.info("[present-rich] %s", upgrade_prompt) 2022-08-10T14:19:41,334 File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info 2022-08-10T14:19:41,334 self._log(INFO, msg, args, **kwargs) 2022-08-10T14:19:41,334 File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log 2022-08-10T14:19:41,334 self.handle(record) 2022-08-10T14:19:41,335 File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle 2022-08-10T14:19:41,335 self.callHandlers(record) 2022-08-10T14:19:41,335 File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers 2022-08-10T14:19:41,336 hdlr.handle(record) 2022-08-10T14:19:41,336 File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle 2022-08-10T14:19:41,336 self.emit(record) 2022-08-10T14:19:41,336 File "/tmp/pip-standalone-pip-eopevfsd/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-08-10T14:19:41,337 self.handleError(record) 2022-08-10T14:19:41,337 Message: '[present-rich] %s' 2022-08-10T14:19:41,337 Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),) 2022-08-10T14:19:41,859 Installing build dependencies: finished with status 'done' 2022-08-10T14:19:41,887 Getting requirements to build wheel: started 2022-08-10T14:19:41,889 Running command Getting requirements to build wheel 2022-08-10T14:19:46,614 running egg_info 2022-08-10T14:19:47,215 writing deeprankcore.egg-info/PKG-INFO 2022-08-10T14:19:47,775 writing dependency_links to deeprankcore.egg-info/dependency_links.txt 2022-08-10T14:19:50,595 writing requirements to deeprankcore.egg-info/requires.txt 2022-08-10T14:19:51,155 writing top-level names to deeprankcore.egg-info/top_level.txt 2022-08-10T14:19:51,813 package init file 'deeprankcore/models/forcefield/__init__.py' not found (or not a regular file) 2022-08-10T14:19:51,817 package init file 'deeprankcore/tools/forcefield/__init__.py' not found (or not a regular file) 2022-08-10T14:19:51,871 reading manifest file 'deeprankcore.egg-info/SOURCES.txt' 2022-08-10T14:19:51,881 reading manifest template 'MANIFEST.in' 2022-08-10T14:19:51,883 warning: no files found matching 'README.rst' 2022-08-10T14:19:51,947 adding license file 'LICENSE' 2022-08-10T14:19:51,962 writing manifest file 'deeprankcore.egg-info/SOURCES.txt' 2022-08-10T14:19:52,169 Getting requirements to build wheel: finished with status 'done' 2022-08-10T14:19:52,191 Created temporary directory: /tmp/pip-modern-metadata-kkv7h2yn 2022-08-10T14:19:52,197 Preparing metadata (pyproject.toml): started 2022-08-10T14:19:52,199 Running command Preparing metadata (pyproject.toml) 2022-08-10T14:19:56,626 running dist_info 2022-08-10T14:19:57,248 creating /tmp/pip-modern-metadata-kkv7h2yn/deeprankcore.egg-info 2022-08-10T14:19:57,849 writing /tmp/pip-modern-metadata-kkv7h2yn/deeprankcore.egg-info/PKG-INFO 2022-08-10T14:19:58,421 writing dependency_links to /tmp/pip-modern-metadata-kkv7h2yn/deeprankcore.egg-info/dependency_links.txt 2022-08-10T14:20:01,238 writing requirements to /tmp/pip-modern-metadata-kkv7h2yn/deeprankcore.egg-info/requires.txt 2022-08-10T14:20:01,808 writing top-level names to /tmp/pip-modern-metadata-kkv7h2yn/deeprankcore.egg-info/top_level.txt 2022-08-10T14:20:01,811 writing manifest file '/tmp/pip-modern-metadata-kkv7h2yn/deeprankcore.egg-info/SOURCES.txt' 2022-08-10T14:20:02,465 package init file 'deeprankcore/models/forcefield/__init__.py' not found (or not a regular file) 2022-08-10T14:20:02,468 package init file 'deeprankcore/tools/forcefield/__init__.py' not found (or not a regular file) 2022-08-10T14:20:02,506 reading manifest file '/tmp/pip-modern-metadata-kkv7h2yn/deeprankcore.egg-info/SOURCES.txt' 2022-08-10T14:20:02,509 reading manifest template 'MANIFEST.in' 2022-08-10T14:20:02,511 warning: no files found matching 'README.rst' 2022-08-10T14:20:02,578 adding license file 'LICENSE' 2022-08-10T14:20:02,590 writing manifest file '/tmp/pip-modern-metadata-kkv7h2yn/deeprankcore.egg-info/SOURCES.txt' 2022-08-10T14:20:02,592 creating '/tmp/pip-modern-metadata-kkv7h2yn/deeprankcore-0.2.0.dist-info' 2022-08-10T14:20:02,920 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-08-10T14:20:03,142 Preparing metadata (pyproject.toml): finished with status 'done' 2022-08-10T14:20:03,159 Source in /tmp/pip-wheel-k3ieb4vo/deeprankcore_5e64841e17154db6a877045236778328 has version 0.2.0, which satisfies requirement deeprankcore==0.2.0 from https://files.pythonhosted.org/packages/66/a2/bf5ec4f42a010009fe3e3673fa811d306286e7b1ce3b1f4795e1387a6926/deeprankcore-0.2.0.tar.gz#sha256=630a3420aa46ff2add9fabfe772d2000b4c9d2617579599a0d9e174ade0f3c9e 2022-08-10T14:20:03,161 Removed deeprankcore==0.2.0 from https://files.pythonhosted.org/packages/66/a2/bf5ec4f42a010009fe3e3673fa811d306286e7b1ce3b1f4795e1387a6926/deeprankcore-0.2.0.tar.gz#sha256=630a3420aa46ff2add9fabfe772d2000b4c9d2617579599a0d9e174ade0f3c9e from build tracker '/tmp/pip-build-tracker-epqgyccq' 2022-08-10T14:20:03,176 Created temporary directory: /tmp/pip-unpack-tc9sa16w 2022-08-10T14:20:03,177 Building wheels for collected packages: deeprankcore 2022-08-10T14:20:03,187 Created temporary directory: /tmp/pip-wheel-t0ujcaj6 2022-08-10T14:20:03,187 Destination directory: /tmp/pip-wheel-t0ujcaj6 2022-08-10T14:20:03,192 Building wheel for deeprankcore (pyproject.toml): started 2022-08-10T14:20:03,194 Running command Building wheel for deeprankcore (pyproject.toml) 2022-08-10T14:20:07,167 running bdist_wheel 2022-08-10T14:20:08,335 running build 2022-08-10T14:20:08,336 running build_py 2022-08-10T14:20:08,931 creating build 2022-08-10T14:20:08,932 creating build/lib 2022-08-10T14:20:08,934 creating build/lib/deeprankcore 2022-08-10T14:20:08,937 copying deeprankcore/Metrics.py -> build/lib/deeprankcore 2022-08-10T14:20:08,942 copying deeprankcore/ginet_nocluster.py -> build/lib/deeprankcore 2022-08-10T14:20:08,946 copying deeprankcore/naive_gnn.py -> build/lib/deeprankcore 2022-08-10T14:20:08,949 copying deeprankcore/alignmentNet.py -> build/lib/deeprankcore 2022-08-10T14:20:08,954 copying deeprankcore/sGAT.py -> build/lib/deeprankcore 2022-08-10T14:20:08,958 copying deeprankcore/DataSet.py -> build/lib/deeprankcore 2022-08-10T14:20:08,962 copying deeprankcore/NeuralNet.py -> build/lib/deeprankcore 2022-08-10T14:20:08,968 copying deeprankcore/foutnet.py -> build/lib/deeprankcore 2022-08-10T14:20:08,971 copying deeprankcore/__init__.py -> build/lib/deeprankcore 2022-08-10T14:20:08,975 copying deeprankcore/GraphGenMP.py -> build/lib/deeprankcore 2022-08-10T14:20:08,979 copying deeprankcore/community_pooling.py -> build/lib/deeprankcore 2022-08-10T14:20:08,984 copying deeprankcore/preprocess.py -> build/lib/deeprankcore 2022-08-10T14:20:08,988 copying deeprankcore/ginet.py -> build/lib/deeprankcore 2022-08-10T14:20:08,994 creating build/lib/deeprankcore/feature 2022-08-10T14:20:08,996 copying deeprankcore/feature/atomic_contact.py -> build/lib/deeprankcore/feature 2022-08-10T14:20:09,000 copying deeprankcore/feature/pssm.py -> build/lib/deeprankcore/feature 2022-08-10T14:20:09,003 copying deeprankcore/feature/bsa.py -> build/lib/deeprankcore/feature 2022-08-10T14:20:09,007 copying deeprankcore/feature/sasa.py -> build/lib/deeprankcore/feature 2022-08-10T14:20:09,010 copying deeprankcore/feature/biopython.py -> build/lib/deeprankcore/feature 2022-08-10T14:20:09,013 copying deeprankcore/feature/amino_acid.py -> build/lib/deeprankcore/feature 2022-08-10T14:20:09,017 copying deeprankcore/feature/__init__.py -> build/lib/deeprankcore/feature 2022-08-10T14:20:09,022 creating build/lib/deeprankcore/models 2022-08-10T14:20:09,023 copying deeprankcore/models/variant.py -> build/lib/deeprankcore/models 2022-08-10T14:20:09,027 copying deeprankcore/models/graph.py -> build/lib/deeprankcore/models 2022-08-10T14:20:09,031 copying deeprankcore/models/pssm.py -> build/lib/deeprankcore/models 2022-08-10T14:20:09,034 copying deeprankcore/models/query.py -> build/lib/deeprankcore/models 2022-08-10T14:20:09,039 copying deeprankcore/models/structure.py -> build/lib/deeprankcore/models 2022-08-10T14:20:09,042 copying deeprankcore/models/error.py -> build/lib/deeprankcore/models 2022-08-10T14:20:09,046 copying deeprankcore/models/polarity.py -> build/lib/deeprankcore/models 2022-08-10T14:20:09,049 copying deeprankcore/models/amino_acid.py -> build/lib/deeprankcore/models 2022-08-10T14:20:09,052 copying deeprankcore/models/__init__.py -> build/lib/deeprankcore/models 2022-08-10T14:20:09,054 copying deeprankcore/models/pair.py -> build/lib/deeprankcore/models 2022-08-10T14:20:09,058 copying deeprankcore/models/grid.py -> build/lib/deeprankcore/models 2022-08-10T14:20:09,062 copying deeprankcore/models/metrics.py -> build/lib/deeprankcore/models 2022-08-10T14:20:09,067 copying deeprankcore/models/contact.py -> build/lib/deeprankcore/models 2022-08-10T14:20:09,071 creating build/lib/deeprankcore/h5x 2022-08-10T14:20:09,072 copying deeprankcore/h5x/baseimport.py -> build/lib/deeprankcore/h5x 2022-08-10T14:20:09,075 copying deeprankcore/h5x/h5x_menu.py -> build/lib/deeprankcore/h5x 2022-08-10T14:20:09,079 copying deeprankcore/h5x/h5x.py -> build/lib/deeprankcore/h5x 2022-08-10T14:20:09,084 copying deeprankcore/h5x/__init__.py -> build/lib/deeprankcore/h5x 2022-08-10T14:20:09,088 creating build/lib/deeprankcore/domain 2022-08-10T14:20:09,089 copying deeprankcore/domain/feature.py -> build/lib/deeprankcore/domain 2022-08-10T14:20:09,092 copying deeprankcore/domain/storage.py -> build/lib/deeprankcore/domain 2022-08-10T14:20:09,096 copying deeprankcore/domain/amino_acid.py -> build/lib/deeprankcore/domain 2022-08-10T14:20:09,099 copying deeprankcore/domain/__init__.py -> build/lib/deeprankcore/domain 2022-08-10T14:20:09,104 creating build/lib/deeprankcore/tools 2022-08-10T14:20:09,105 copying deeprankcore/tools/graph.py -> build/lib/deeprankcore/tools 2022-08-10T14:20:09,109 copying deeprankcore/tools/pssm.py -> build/lib/deeprankcore/tools 2022-08-10T14:20:09,112 copying deeprankcore/tools/visualization.py -> build/lib/deeprankcore/tools 2022-08-10T14:20:09,116 copying deeprankcore/tools/hdf5_to_csv.py -> build/lib/deeprankcore/tools 2022-08-10T14:20:09,120 copying deeprankcore/tools/BSA.py -> build/lib/deeprankcore/tools 2022-08-10T14:20:09,124 copying deeprankcore/tools/CustomizeGraph.py -> build/lib/deeprankcore/tools 2022-08-10T14:20:09,128 copying deeprankcore/tools/embedding.py -> build/lib/deeprankcore/tools 2022-08-10T14:20:09,131 copying deeprankcore/tools/pssm_3dcons_to_deeprank.py -> build/lib/deeprankcore/tools 2022-08-10T14:20:09,134 copying deeprankcore/tools/pdb.py -> build/lib/deeprankcore/tools 2022-08-10T14:20:09,138 copying deeprankcore/tools/score.py -> build/lib/deeprankcore/tools 2022-08-10T14:20:09,141 copying deeprankcore/tools/__init__.py -> build/lib/deeprankcore/tools 2022-08-10T14:20:09,144 copying deeprankcore/tools/BioWrappers.py -> build/lib/deeprankcore/tools 2022-08-10T14:20:09,147 package init file 'deeprankcore/models/forcefield/__init__.py' not found (or not a regular file) 2022-08-10T14:20:09,149 creating build/lib/deeprankcore/models/forcefield 2022-08-10T14:20:09,150 copying deeprankcore/models/forcefield/vanderwaals.py -> build/lib/deeprankcore/models/forcefield 2022-08-10T14:20:09,153 copying deeprankcore/models/forcefield/residue.py -> build/lib/deeprankcore/models/forcefield 2022-08-10T14:20:09,156 copying deeprankcore/models/forcefield/top.py -> build/lib/deeprankcore/models/forcefield 2022-08-10T14:20:09,159 copying deeprankcore/models/forcefield/patch.py -> build/lib/deeprankcore/models/forcefield 2022-08-10T14:20:09,163 creating build/lib/deeprankcore/domain/forcefield 2022-08-10T14:20:09,165 copying deeprankcore/domain/forcefield/__init__.py -> build/lib/deeprankcore/domain/forcefield 2022-08-10T14:20:09,169 package init file 'deeprankcore/tools/forcefield/__init__.py' not found (or not a regular file) 2022-08-10T14:20:09,172 creating build/lib/deeprankcore/tools/forcefield 2022-08-10T14:20:09,173 copying deeprankcore/tools/forcefield/residue.py -> build/lib/deeprankcore/tools/forcefield 2022-08-10T14:20:09,176 copying deeprankcore/tools/forcefield/top.py -> build/lib/deeprankcore/tools/forcefield 2022-08-10T14:20:09,180 copying deeprankcore/tools/forcefield/patch.py -> build/lib/deeprankcore/tools/forcefield 2022-08-10T14:20:09,183 copying deeprankcore/tools/forcefield/param.py -> build/lib/deeprankcore/tools/forcefield 2022-08-10T14:20:09,185 running egg_info 2022-08-10T14:20:10,391 writing deeprankcore.egg-info/PKG-INFO 2022-08-10T14:20:11,006 writing dependency_links to deeprankcore.egg-info/dependency_links.txt 2022-08-10T14:20:13,806 writing requirements to deeprankcore.egg-info/requires.txt 2022-08-10T14:20:14,367 writing top-level names to deeprankcore.egg-info/top_level.txt 2022-08-10T14:20:14,421 reading manifest file 'deeprankcore.egg-info/SOURCES.txt' 2022-08-10T14:20:14,429 reading manifest template 'MANIFEST.in' 2022-08-10T14:20:14,430 warning: no files found matching 'README.rst' 2022-08-10T14:20:14,495 adding license file 'LICENSE' 2022-08-10T14:20:14,512 writing manifest file 'deeprankcore.egg-info/SOURCES.txt' 2022-08-10T14:20:14,519 copying deeprankcore/domain/forcefield/patch.top -> build/lib/deeprankcore/domain/forcefield 2022-08-10T14:20:14,524 copying deeprankcore/domain/forcefield/protein-allhdg5-4_new.param -> build/lib/deeprankcore/domain/forcefield 2022-08-10T14:20:14,528 copying deeprankcore/domain/forcefield/protein-allhdg5-5_new.top -> build/lib/deeprankcore/domain/forcefield 2022-08-10T14:20:14,534 copying deeprankcore/domain/forcefield/residue-classes -> build/lib/deeprankcore/domain/forcefield 2022-08-10T14:20:15,757 installing to build/bdist.linux-armv7l/wheel 2022-08-10T14:20:15,758 running install 2022-08-10T14:20:15,819 running install_lib 2022-08-10T14:20:16,412 creating build/bdist.linux-armv7l 2022-08-10T14:20:16,412 creating build/bdist.linux-armv7l/wheel 2022-08-10T14:20:16,416 creating build/bdist.linux-armv7l/wheel/deeprankcore 2022-08-10T14:20:16,418 copying build/lib/deeprankcore/Metrics.py -> build/bdist.linux-armv7l/wheel/deeprankcore 2022-08-10T14:20:16,424 creating build/bdist.linux-armv7l/wheel/deeprankcore/feature 2022-08-10T14:20:16,425 copying build/lib/deeprankcore/feature/atomic_contact.py -> build/bdist.linux-armv7l/wheel/deeprankcore/feature 2022-08-10T14:20:16,430 copying build/lib/deeprankcore/feature/pssm.py -> build/bdist.linux-armv7l/wheel/deeprankcore/feature 2022-08-10T14:20:16,433 copying build/lib/deeprankcore/feature/bsa.py -> build/bdist.linux-armv7l/wheel/deeprankcore/feature 2022-08-10T14:20:16,437 copying build/lib/deeprankcore/feature/sasa.py -> build/bdist.linux-armv7l/wheel/deeprankcore/feature 2022-08-10T14:20:16,441 copying build/lib/deeprankcore/feature/biopython.py -> build/bdist.linux-armv7l/wheel/deeprankcore/feature 2022-08-10T14:20:16,444 copying build/lib/deeprankcore/feature/amino_acid.py -> build/bdist.linux-armv7l/wheel/deeprankcore/feature 2022-08-10T14:20:16,448 copying build/lib/deeprankcore/feature/__init__.py -> build/bdist.linux-armv7l/wheel/deeprankcore/feature 2022-08-10T14:20:16,452 creating build/bdist.linux-armv7l/wheel/deeprankcore/models 2022-08-10T14:20:16,453 copying build/lib/deeprankcore/models/variant.py -> build/bdist.linux-armv7l/wheel/deeprankcore/models 2022-08-10T14:20:16,457 copying build/lib/deeprankcore/models/graph.py -> build/bdist.linux-armv7l/wheel/deeprankcore/models 2022-08-10T14:20:16,461 copying build/lib/deeprankcore/models/pssm.py -> build/bdist.linux-armv7l/wheel/deeprankcore/models 2022-08-10T14:20:16,465 copying build/lib/deeprankcore/models/query.py -> build/bdist.linux-armv7l/wheel/deeprankcore/models 2022-08-10T14:20:16,470 copying build/lib/deeprankcore/models/structure.py -> build/bdist.linux-armv7l/wheel/deeprankcore/models 2022-08-10T14:20:16,474 copying build/lib/deeprankcore/models/error.py -> build/bdist.linux-armv7l/wheel/deeprankcore/models 2022-08-10T14:20:16,477 copying build/lib/deeprankcore/models/polarity.py -> build/bdist.linux-armv7l/wheel/deeprankcore/models 2022-08-10T14:20:16,480 copying build/lib/deeprankcore/models/amino_acid.py -> build/bdist.linux-armv7l/wheel/deeprankcore/models 2022-08-10T14:20:16,484 copying build/lib/deeprankcore/models/__init__.py -> build/bdist.linux-armv7l/wheel/deeprankcore/models 2022-08-10T14:20:16,486 copying build/lib/deeprankcore/models/pair.py -> build/bdist.linux-armv7l/wheel/deeprankcore/models 2022-08-10T14:20:16,489 copying build/lib/deeprankcore/models/grid.py -> build/bdist.linux-armv7l/wheel/deeprankcore/models 2022-08-10T14:20:16,494 copying build/lib/deeprankcore/models/metrics.py -> build/bdist.linux-armv7l/wheel/deeprankcore/models 2022-08-10T14:20:16,498 copying build/lib/deeprankcore/models/contact.py -> build/bdist.linux-armv7l/wheel/deeprankcore/models 2022-08-10T14:20:16,502 creating build/bdist.linux-armv7l/wheel/deeprankcore/models/forcefield 2022-08-10T14:20:16,504 copying build/lib/deeprankcore/models/forcefield/vanderwaals.py -> build/bdist.linux-armv7l/wheel/deeprankcore/models/forcefield 2022-08-10T14:20:16,507 copying build/lib/deeprankcore/models/forcefield/residue.py -> build/bdist.linux-armv7l/wheel/deeprankcore/models/forcefield 2022-08-10T14:20:16,510 copying build/lib/deeprankcore/models/forcefield/top.py -> build/bdist.linux-armv7l/wheel/deeprankcore/models/forcefield 2022-08-10T14:20:16,513 copying build/lib/deeprankcore/models/forcefield/patch.py -> build/bdist.linux-armv7l/wheel/deeprankcore/models/forcefield 2022-08-10T14:20:16,517 copying build/lib/deeprankcore/ginet_nocluster.py -> build/bdist.linux-armv7l/wheel/deeprankcore 2022-08-10T14:20:16,520 copying build/lib/deeprankcore/naive_gnn.py -> build/bdist.linux-armv7l/wheel/deeprankcore 2022-08-10T14:20:16,523 copying build/lib/deeprankcore/alignmentNet.py -> build/bdist.linux-armv7l/wheel/deeprankcore 2022-08-10T14:20:16,528 copying build/lib/deeprankcore/sGAT.py -> build/bdist.linux-armv7l/wheel/deeprankcore 2022-08-10T14:20:16,531 copying build/lib/deeprankcore/DataSet.py -> build/bdist.linux-armv7l/wheel/deeprankcore 2022-08-10T14:20:16,536 copying build/lib/deeprankcore/NeuralNet.py -> build/bdist.linux-armv7l/wheel/deeprankcore 2022-08-10T14:20:16,542 creating build/bdist.linux-armv7l/wheel/deeprankcore/h5x 2022-08-10T14:20:16,544 copying build/lib/deeprankcore/h5x/baseimport.py -> build/bdist.linux-armv7l/wheel/deeprankcore/h5x 2022-08-10T14:20:16,548 copying build/lib/deeprankcore/h5x/h5x_menu.py -> build/bdist.linux-armv7l/wheel/deeprankcore/h5x 2022-08-10T14:20:16,551 copying build/lib/deeprankcore/h5x/h5x.py -> build/bdist.linux-armv7l/wheel/deeprankcore/h5x 2022-08-10T14:20:16,554 copying build/lib/deeprankcore/h5x/__init__.py -> build/bdist.linux-armv7l/wheel/deeprankcore/h5x 2022-08-10T14:20:16,558 creating build/bdist.linux-armv7l/wheel/deeprankcore/domain 2022-08-10T14:20:16,559 copying build/lib/deeprankcore/domain/feature.py -> build/bdist.linux-armv7l/wheel/deeprankcore/domain 2022-08-10T14:20:16,563 copying build/lib/deeprankcore/domain/storage.py -> build/bdist.linux-armv7l/wheel/deeprankcore/domain 2022-08-10T14:20:16,566 copying build/lib/deeprankcore/domain/amino_acid.py -> build/bdist.linux-armv7l/wheel/deeprankcore/domain 2022-08-10T14:20:16,570 copying build/lib/deeprankcore/domain/__init__.py -> build/bdist.linux-armv7l/wheel/deeprankcore/domain 2022-08-10T14:20:16,574 creating build/bdist.linux-armv7l/wheel/deeprankcore/domain/forcefield 2022-08-10T14:20:16,575 copying build/lib/deeprankcore/domain/forcefield/residue-classes -> build/bdist.linux-armv7l/wheel/deeprankcore/domain/forcefield 2022-08-10T14:20:16,579 copying build/lib/deeprankcore/domain/forcefield/protein-allhdg5-4_new.param -> build/bdist.linux-armv7l/wheel/deeprankcore/domain/forcefield 2022-08-10T14:20:16,583 copying build/lib/deeprankcore/domain/forcefield/patch.top -> build/bdist.linux-armv7l/wheel/deeprankcore/domain/forcefield 2022-08-10T14:20:16,587 copying build/lib/deeprankcore/domain/forcefield/protein-allhdg5-5_new.top -> build/bdist.linux-armv7l/wheel/deeprankcore/domain/forcefield 2022-08-10T14:20:16,593 copying build/lib/deeprankcore/domain/forcefield/__init__.py -> build/bdist.linux-armv7l/wheel/deeprankcore/domain/forcefield 2022-08-10T14:20:16,597 copying build/lib/deeprankcore/foutnet.py -> build/bdist.linux-armv7l/wheel/deeprankcore 2022-08-10T14:20:16,601 copying build/lib/deeprankcore/__init__.py -> build/bdist.linux-armv7l/wheel/deeprankcore 2022-08-10T14:20:16,604 copying build/lib/deeprankcore/GraphGenMP.py -> build/bdist.linux-armv7l/wheel/deeprankcore 2022-08-10T14:20:16,608 copying build/lib/deeprankcore/community_pooling.py -> build/bdist.linux-armv7l/wheel/deeprankcore 2022-08-10T14:20:16,612 copying build/lib/deeprankcore/preprocess.py -> build/bdist.linux-armv7l/wheel/deeprankcore 2022-08-10T14:20:16,617 creating build/bdist.linux-armv7l/wheel/deeprankcore/tools 2022-08-10T14:20:16,618 copying build/lib/deeprankcore/tools/graph.py -> build/bdist.linux-armv7l/wheel/deeprankcore/tools 2022-08-10T14:20:16,621 copying build/lib/deeprankcore/tools/pssm.py -> build/bdist.linux-armv7l/wheel/deeprankcore/tools 2022-08-10T14:20:16,625 copying build/lib/deeprankcore/tools/visualization.py -> build/bdist.linux-armv7l/wheel/deeprankcore/tools 2022-08-10T14:20:16,629 copying build/lib/deeprankcore/tools/hdf5_to_csv.py -> build/bdist.linux-armv7l/wheel/deeprankcore/tools 2022-08-10T14:20:16,633 copying build/lib/deeprankcore/tools/BSA.py -> build/bdist.linux-armv7l/wheel/deeprankcore/tools 2022-08-10T14:20:16,637 copying build/lib/deeprankcore/tools/CustomizeGraph.py -> build/bdist.linux-armv7l/wheel/deeprankcore/tools 2022-08-10T14:20:16,640 copying build/lib/deeprankcore/tools/embedding.py -> build/bdist.linux-armv7l/wheel/deeprankcore/tools 2022-08-10T14:20:16,643 copying build/lib/deeprankcore/tools/pssm_3dcons_to_deeprank.py -> build/bdist.linux-armv7l/wheel/deeprankcore/tools 2022-08-10T14:20:16,646 copying build/lib/deeprankcore/tools/pdb.py -> build/bdist.linux-armv7l/wheel/deeprankcore/tools 2022-08-10T14:20:16,651 copying build/lib/deeprankcore/tools/score.py -> build/bdist.linux-armv7l/wheel/deeprankcore/tools 2022-08-10T14:20:16,655 copying build/lib/deeprankcore/tools/__init__.py -> build/bdist.linux-armv7l/wheel/deeprankcore/tools 2022-08-10T14:20:16,657 copying build/lib/deeprankcore/tools/BioWrappers.py -> build/bdist.linux-armv7l/wheel/deeprankcore/tools 2022-08-10T14:20:16,661 creating build/bdist.linux-armv7l/wheel/deeprankcore/tools/forcefield 2022-08-10T14:20:16,663 copying build/lib/deeprankcore/tools/forcefield/residue.py -> build/bdist.linux-armv7l/wheel/deeprankcore/tools/forcefield 2022-08-10T14:20:16,666 copying build/lib/deeprankcore/tools/forcefield/top.py -> build/bdist.linux-armv7l/wheel/deeprankcore/tools/forcefield 2022-08-10T14:20:16,670 copying build/lib/deeprankcore/tools/forcefield/patch.py -> build/bdist.linux-armv7l/wheel/deeprankcore/tools/forcefield 2022-08-10T14:20:16,673 copying build/lib/deeprankcore/tools/forcefield/param.py -> build/bdist.linux-armv7l/wheel/deeprankcore/tools/forcefield 2022-08-10T14:20:16,676 copying build/lib/deeprankcore/ginet.py -> build/bdist.linux-armv7l/wheel/deeprankcore 2022-08-10T14:20:16,679 running install_egg_info 2022-08-10T14:20:17,290 Copying deeprankcore.egg-info to build/bdist.linux-armv7l/wheel/deeprankcore-0.2.0-py3.9.egg-info 2022-08-10T14:20:17,315 running install_scripts 2022-08-10T14:20:17,586 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-08-10T14:20:17,595 creating build/bdist.linux-armv7l/wheel/deeprankcore-0.2.0.dist-info/WHEEL 2022-08-10T14:20:17,600 creating '/tmp/pip-wheel-t0ujcaj6/tmpq107jyu_/deeprankcore-0.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-08-10T14:20:17,608 adding 'deeprankcore/DataSet.py' 2022-08-10T14:20:17,612 adding 'deeprankcore/GraphGenMP.py' 2022-08-10T14:20:17,616 adding 'deeprankcore/Metrics.py' 2022-08-10T14:20:17,623 adding 'deeprankcore/NeuralNet.py' 2022-08-10T14:20:17,625 adding 'deeprankcore/__init__.py' 2022-08-10T14:20:17,629 adding 'deeprankcore/alignmentNet.py' 2022-08-10T14:20:17,632 adding 'deeprankcore/community_pooling.py' 2022-08-10T14:20:17,636 adding 'deeprankcore/foutnet.py' 2022-08-10T14:20:17,638 adding 'deeprankcore/ginet.py' 2022-08-10T14:20:17,641 adding 'deeprankcore/ginet_nocluster.py' 2022-08-10T14:20:17,644 adding 'deeprankcore/naive_gnn.py' 2022-08-10T14:20:17,646 adding 'deeprankcore/preprocess.py' 2022-08-10T14:20:17,649 adding 'deeprankcore/sGAT.py' 2022-08-10T14:20:17,652 adding 'deeprankcore/domain/__init__.py' 2022-08-10T14:20:17,655 adding 'deeprankcore/domain/amino_acid.py' 2022-08-10T14:20:17,658 adding 'deeprankcore/domain/feature.py' 2022-08-10T14:20:17,660 adding 'deeprankcore/domain/storage.py' 2022-08-10T14:20:17,664 adding 'deeprankcore/domain/forcefield/__init__.py' 2022-08-10T14:20:17,667 adding 'deeprankcore/domain/forcefield/patch.top' 2022-08-10T14:20:17,670 adding 'deeprankcore/domain/forcefield/protein-allhdg5-4_new.param' 2022-08-10T14:20:17,678 adding 'deeprankcore/domain/forcefield/protein-allhdg5-5_new.top' 2022-08-10T14:20:17,681 adding 'deeprankcore/domain/forcefield/residue-classes' 2022-08-10T14:20:17,684 adding 'deeprankcore/feature/__init__.py' 2022-08-10T14:20:17,686 adding 'deeprankcore/feature/amino_acid.py' 2022-08-10T14:20:17,690 adding 'deeprankcore/feature/atomic_contact.py' 2022-08-10T14:20:17,693 adding 'deeprankcore/feature/biopython.py' 2022-08-10T14:20:17,695 adding 'deeprankcore/feature/bsa.py' 2022-08-10T14:20:17,698 adding 'deeprankcore/feature/pssm.py' 2022-08-10T14:20:17,701 adding 'deeprankcore/feature/sasa.py' 2022-08-10T14:20:17,704 adding 'deeprankcore/h5x/__init__.py' 2022-08-10T14:20:17,706 adding 'deeprankcore/h5x/baseimport.py' 2022-08-10T14:20:17,708 adding 'deeprankcore/h5x/h5x.py' 2022-08-10T14:20:17,711 adding 'deeprankcore/h5x/h5x_menu.py' 2022-08-10T14:20:17,714 adding 'deeprankcore/models/__init__.py' 2022-08-10T14:20:17,717 adding 'deeprankcore/models/amino_acid.py' 2022-08-10T14:20:17,719 adding 'deeprankcore/models/contact.py' 2022-08-10T14:20:17,721 adding 'deeprankcore/models/error.py' 2022-08-10T14:20:17,725 adding 'deeprankcore/models/graph.py' 2022-08-10T14:20:17,728 adding 'deeprankcore/models/grid.py' 2022-08-10T14:20:17,732 adding 'deeprankcore/models/metrics.py' 2022-08-10T14:20:17,735 adding 'deeprankcore/models/pair.py' 2022-08-10T14:20:17,737 adding 'deeprankcore/models/polarity.py' 2022-08-10T14:20:17,739 adding 'deeprankcore/models/pssm.py' 2022-08-10T14:20:17,744 adding 'deeprankcore/models/query.py' 2022-08-10T14:20:17,748 adding 'deeprankcore/models/structure.py' 2022-08-10T14:20:17,751 adding 'deeprankcore/models/variant.py' 2022-08-10T14:20:17,758 adding 'deeprankcore/models/forcefield/patch.py' 2022-08-10T14:20:17,760 adding 'deeprankcore/models/forcefield/residue.py' 2022-08-10T14:20:17,762 adding 'deeprankcore/models/forcefield/top.py' 2022-08-10T14:20:17,765 adding 'deeprankcore/models/forcefield/vanderwaals.py' 2022-08-10T14:20:17,769 adding 'deeprankcore/tools/BSA.py' 2022-08-10T14:20:17,771 adding 'deeprankcore/tools/BioWrappers.py' 2022-08-10T14:20:17,774 adding 'deeprankcore/tools/CustomizeGraph.py' 2022-08-10T14:20:17,776 adding 'deeprankcore/tools/__init__.py' 2022-08-10T14:20:17,779 adding 'deeprankcore/tools/embedding.py' 2022-08-10T14:20:17,781 adding 'deeprankcore/tools/graph.py' 2022-08-10T14:20:17,784 adding 'deeprankcore/tools/hdf5_to_csv.py' 2022-08-10T14:20:17,789 adding 'deeprankcore/tools/pdb.py' 2022-08-10T14:20:17,791 adding 'deeprankcore/tools/pssm.py' 2022-08-10T14:20:17,794 adding 'deeprankcore/tools/pssm_3dcons_to_deeprank.py' 2022-08-10T14:20:17,797 adding 'deeprankcore/tools/score.py' 2022-08-10T14:20:17,801 adding 'deeprankcore/tools/visualization.py' 2022-08-10T14:20:17,804 adding 'deeprankcore/tools/forcefield/param.py' 2022-08-10T14:20:17,807 adding 'deeprankcore/tools/forcefield/patch.py' 2022-08-10T14:20:17,809 adding 'deeprankcore/tools/forcefield/residue.py' 2022-08-10T14:20:17,812 adding 'deeprankcore/tools/forcefield/top.py' 2022-08-10T14:20:17,819 adding 'deeprankcore-0.2.0.dist-info/LICENSE' 2022-08-10T14:20:17,822 adding 'deeprankcore-0.2.0.dist-info/METADATA' 2022-08-10T14:20:17,824 adding 'deeprankcore-0.2.0.dist-info/WHEEL' 2022-08-10T14:20:17,826 adding 'deeprankcore-0.2.0.dist-info/top_level.txt' 2022-08-10T14:20:17,830 adding 'deeprankcore-0.2.0.dist-info/RECORD' 2022-08-10T14:20:17,837 removing build/bdist.linux-armv7l/wheel 2022-08-10T14:20:18,132 Building wheel for deeprankcore (pyproject.toml): finished with status 'done' 2022-08-10T14:20:18,150 Created wheel for deeprankcore: filename=deeprankcore-0.2.0-py3-none-any.whl size=92276 sha256=4b575c80a3bd3fe2b51090be3f8a027359c10935d77e9c29c3ed0715d7993cdc 2022-08-10T14:20:18,152 Stored in directory: /tmp/pip-ephem-wheel-cache-5d3uhylq/wheels/66/93/ec/1cee30809cbbbc1a45e12f9f6530a84b839085571b2f73a620 2022-08-10T14:20:18,185 Successfully built deeprankcore 2022-08-10T14:20:18,198 Removed build tracker: '/tmp/pip-build-tracker-epqgyccq'