2022-08-11T11:43:35,334 Created temporary directory: /tmp/pip-ephem-wheel-cache-t2unni5d 2022-08-11T11:43:35,340 Created temporary directory: /tmp/pip-build-tracker-k2g31ccy 2022-08-11T11:43:35,341 Initialized build tracking at /tmp/pip-build-tracker-k2g31ccy 2022-08-11T11:43:35,341 Created build tracker: /tmp/pip-build-tracker-k2g31ccy 2022-08-11T11:43:35,341 Entered build tracker: /tmp/pip-build-tracker-k2g31ccy 2022-08-11T11:43:35,343 Created temporary directory: /tmp/pip-wheel-lvql__dl 2022-08-11T11:43:35,407 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-11T11:43:35,415 2 location(s) to search for versions of ispyb: 2022-08-11T11:43:35,415 * https://pypi.org/simple/ispyb/ 2022-08-11T11:43:35,415 * https://www.piwheels.org/simple/ispyb/ 2022-08-11T11:43:35,416 Fetching project page and analyzing links: https://pypi.org/simple/ispyb/ 2022-08-11T11:43:35,417 Getting page https://pypi.org/simple/ispyb/ 2022-08-11T11:43:35,420 Found index url 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permitted for ispyb: https://www.piwheels.org/simple/ispyb/ispyb-0.5-py3-none-any.whl#sha256=1a8ef59d1fad3edfd8cdf7211e6f31297558f573c254eb4f3ba97ab3982b79d4 (from https://www.piwheels.org/simple/ispyb/) 2022-08-11T11:43:36,088 Skipping link: No binaries permitted for ispyb: https://www.piwheels.org/simple/ispyb/ispyb-0.4-py3-none-any.whl#sha256=9ef896f5ca835fd0ca2570910eddb6a8a51ede4c44fb0b52e463b0c8fb01dcaf (from https://www.piwheels.org/simple/ispyb/) 2022-08-11T11:43:36,088 Skipping link: not a file: https://www.piwheels.org/simple/ispyb/ 2022-08-11T11:43:36,089 Skipping link: not a file: https://pypi.org/simple/ispyb/ 2022-08-11T11:43:36,147 Given no hashes to check 1 links for project 'ispyb': discarding no candidates 2022-08-11T11:43:36,180 Collecting ispyb==6.12.0 2022-08-11T11:43:36,184 Created temporary directory: /tmp/pip-unpack-m5d53dq1 2022-08-11T11:43:36,469 Downloading ispyb-6.12.0.tar.gz (81 kB) 2022-08-11T11:43:36,832 Added ispyb==6.12.0 from https://files.pythonhosted.org/packages/88/09/d49049c896ff5a652c5e7db920e8b71da4fa72f2f899d228d9a3fa5e5afe/ispyb-6.12.0.tar.gz#sha256=d550d987c9cb6ff30510e333efccaf924ff40fd2b4ddc3b045c31df850062ffa to build tracker '/tmp/pip-build-tracker-k2g31ccy' 2022-08-11T11:43:36,841 Created temporary directory: /tmp/pip-build-env-th14vbyc 2022-08-11T11:43:36,855 Created temporary directory: /tmp/pip-standalone-pip-o67vi1r5 2022-08-11T11:43:39,158 Installing build dependencies: started 2022-08-11T11:43:39,160 Running command pip subprocess to install build dependencies 2022-08-11T11:43:48,693 Using pip 22.1.2 from /tmp/pip-standalone-pip-o67vi1r5/__env_pip__.zip/pip (python 3.7) 2022-08-11T11:43:50,563 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-11T11:43:54,705 Collecting setuptools>=40.8.0 2022-08-11T11:43:54,980 Using cached https://www.piwheels.org/simple/setuptools/setuptools-63.4.3-py3-none-any.whl (1.2 MB) 2022-08-11T11:43:55,641 Collecting wheel 2022-08-11T11:43:55,676 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-08-11T11:44:06,289 Installing collected packages: wheel, setuptools 2022-08-11T11:44:06,560 Creating /tmp/pip-build-env-th14vbyc/overlay/bin 2022-08-11T11:44:06,564 changing mode of /tmp/pip-build-env-th14vbyc/overlay/bin/wheel to 755 2022-08-11T11:44:11,397 Successfully installed setuptools-63.4.3 wheel-0.37.1 2022-08-11T11:44:11,636 --- Logging error --- 2022-08-11T11:44:11,636 Traceback (most recent call last): 2022-08-11T11:44:11,637 File "/tmp/pip-standalone-pip-o67vi1r5/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-08-11T11:44:11,637 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-08-11T11:44:11,637 File "/tmp/pip-standalone-pip-o67vi1r5/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-08-11T11:44:11,638 extend(render(renderable, render_options)) 2022-08-11T11:44:11,638 File "/tmp/pip-standalone-pip-o67vi1r5/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-08-11T11:44:11,639 for render_output in iter_render: 2022-08-11T11:44:11,639 File "/tmp/pip-standalone-pip-o67vi1r5/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-08-11T11:44:11,639 for line in lines: 2022-08-11T11:44:11,640 File "/tmp/pip-standalone-pip-o67vi1r5/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-08-11T11:44:11,640 for segment in segments: 2022-08-11T11:44:11,640 File "/tmp/pip-standalone-pip-o67vi1r5/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-08-11T11:44:11,641 renderable = rich_cast(renderable) 2022-08-11T11:44:11,641 File "/tmp/pip-standalone-pip-o67vi1r5/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-08-11T11:44:11,641 renderable = cast_method() 2022-08-11T11:44:11,642 File "/tmp/pip-standalone-pip-o67vi1r5/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-08-11T11:44:11,642 pip_cmd = get_best_invocation_for_this_pip() 2022-08-11T11:44:11,642 File "/tmp/pip-standalone-pip-o67vi1r5/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 60, in get_best_invocation_for_this_pip 2022-08-11T11:44:11,642 os.path.join(binary_prefix, exe_name), 2022-08-11T11:44:11,643 File "/usr/lib/python3.7/genericpath.py", line 97, in samefile 2022-08-11T11:44:11,643 s2 = os.stat(f2) 2022-08-11T11:44:11,643 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.7' 2022-08-11T11:44:11,644 Call stack: 2022-08-11T11:44:11,644 File "/usr/lib/python3.7/runpy.py", line 193, in _run_module_as_main 2022-08-11T11:44:11,644 "__main__", mod_spec) 2022-08-11T11:44:11,645 File "/usr/lib/python3.7/runpy.py", line 85, in _run_code 2022-08-11T11:44:11,645 exec(code, run_globals) 2022-08-11T11:44:11,645 File "/tmp/pip-standalone-pip-o67vi1r5/__env_pip__.zip/pip/__main__.py", line 31, in 2022-08-11T11:44:11,646 sys.exit(_main()) 2022-08-11T11:44:11,646 File "/tmp/pip-standalone-pip-o67vi1r5/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-08-11T11:44:11,646 return command.main(cmd_args) 2022-08-11T11:44:11,646 File "/tmp/pip-standalone-pip-o67vi1r5/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-08-11T11:44:11,647 return self._main(args) 2022-08-11T11:44:11,647 File "/tmp/pip-standalone-pip-o67vi1r5/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-08-11T11:44:11,647 self.handle_pip_version_check(options) 2022-08-11T11:44:11,648 File "/tmp/pip-standalone-pip-o67vi1r5/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-08-11T11:44:11,648 pip_self_version_check(session, options) 2022-08-11T11:44:11,649 File "/tmp/pip-standalone-pip-o67vi1r5/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-08-11T11:44:11,649 logger.info("[present-rich] %s", upgrade_prompt) 2022-08-11T11:44:11,649 File "/usr/lib/python3.7/logging/__init__.py", line 1383, in info 2022-08-11T11:44:11,649 self._log(INFO, msg, args, **kwargs) 2022-08-11T11:44:11,650 File "/usr/lib/python3.7/logging/__init__.py", line 1519, in _log 2022-08-11T11:44:11,650 self.handle(record) 2022-08-11T11:44:11,650 File "/usr/lib/python3.7/logging/__init__.py", line 1529, in handle 2022-08-11T11:44:11,651 self.callHandlers(record) 2022-08-11T11:44:11,651 File "/usr/lib/python3.7/logging/__init__.py", line 1591, in callHandlers 2022-08-11T11:44:11,651 hdlr.handle(record) 2022-08-11T11:44:11,652 File "/usr/lib/python3.7/logging/__init__.py", line 905, in handle 2022-08-11T11:44:11,652 self.emit(record) 2022-08-11T11:44:11,652 File "/tmp/pip-standalone-pip-o67vi1r5/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-08-11T11:44:11,653 self.handleError(record) 2022-08-11T11:44:11,653 Message: '[present-rich] %s' 2022-08-11T11:44:11,653 Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),) 2022-08-11T11:44:12,125 Installing build dependencies: finished with status 'done' 2022-08-11T11:44:12,152 Getting requirements to build wheel: started 2022-08-11T11:44:12,154 Running command Getting requirements to build wheel 2022-08-11T11:44:17,008 running egg_info 2022-08-11T11:44:17,639 writing src/ispyb.egg-info/PKG-INFO 2022-08-11T11:44:18,231 writing dependency_links to src/ispyb.egg-info/dependency_links.txt 2022-08-11T11:44:20,004 writing entry points to src/ispyb.egg-info/entry_points.txt 2022-08-11T11:44:21,185 writing requirements to src/ispyb.egg-info/requires.txt 2022-08-11T11:44:21,775 writing top-level names to src/ispyb.egg-info/top_level.txt 2022-08-11T11:44:22,570 reading manifest file 'src/ispyb.egg-info/SOURCES.txt' 2022-08-11T11:44:22,578 reading manifest template 'MANIFEST.in' 2022-08-11T11:44:22,582 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2022-08-11T11:44:22,583 % (opt, underscore_opt) 2022-08-11T11:44:22,583 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'project-urls' will not be supported in future versions. Please use the underscore name 'project_urls' instead 2022-08-11T11:44:22,584 % (opt, underscore_opt) 2022-08-11T11:44:22,584 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-08-11T11:44:22,586 warning: no previously-included files matching '*.py[co]' found under directory '*' 2022-08-11T11:44:22,587 adding license file 'LICENSE.md' 2022-08-11T11:44:22,598 writing manifest file 'src/ispyb.egg-info/SOURCES.txt' 2022-08-11T11:44:22,816 Getting requirements to build wheel: finished with status 'done' 2022-08-11T11:44:22,837 Created temporary directory: /tmp/pip-modern-metadata-jd2b6k27 2022-08-11T11:44:22,842 Preparing metadata (pyproject.toml): started 2022-08-11T11:44:22,845 Running command Preparing metadata (pyproject.toml) 2022-08-11T11:44:27,393 running dist_info 2022-08-11T11:44:28,048 creating /tmp/pip-modern-metadata-jd2b6k27/ispyb.egg-info 2022-08-11T11:44:28,673 writing /tmp/pip-modern-metadata-jd2b6k27/ispyb.egg-info/PKG-INFO 2022-08-11T11:44:29,266 writing dependency_links to /tmp/pip-modern-metadata-jd2b6k27/ispyb.egg-info/dependency_links.txt 2022-08-11T11:44:31,037 writing entry points to /tmp/pip-modern-metadata-jd2b6k27/ispyb.egg-info/entry_points.txt 2022-08-11T11:44:32,218 writing requirements to /tmp/pip-modern-metadata-jd2b6k27/ispyb.egg-info/requires.txt 2022-08-11T11:44:32,809 writing top-level names to /tmp/pip-modern-metadata-jd2b6k27/ispyb.egg-info/top_level.txt 2022-08-11T11:44:32,812 writing manifest file '/tmp/pip-modern-metadata-jd2b6k27/ispyb.egg-info/SOURCES.txt' 2022-08-11T11:44:33,585 reading manifest file '/tmp/pip-modern-metadata-jd2b6k27/ispyb.egg-info/SOURCES.txt' 2022-08-11T11:44:33,588 reading manifest template 'MANIFEST.in' 2022-08-11T11:44:33,591 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2022-08-11T11:44:33,592 % (opt, underscore_opt) 2022-08-11T11:44:33,592 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'project-urls' will not be supported in future versions. Please use the underscore name 'project_urls' instead 2022-08-11T11:44:33,592 % (opt, underscore_opt) 2022-08-11T11:44:33,593 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-08-11T11:44:33,593 warning: no previously-included files matching '*.py[co]' found under directory '*' 2022-08-11T11:44:33,594 adding license file 'LICENSE.md' 2022-08-11T11:44:33,601 writing manifest file '/tmp/pip-modern-metadata-jd2b6k27/ispyb.egg-info/SOURCES.txt' 2022-08-11T11:44:33,604 creating '/tmp/pip-modern-metadata-jd2b6k27/ispyb-6.12.0.dist-info' 2022-08-11T11:44:33,831 adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*") 2022-08-11T11:44:34,066 Preparing metadata (pyproject.toml): finished with status 'done' 2022-08-11T11:44:34,081 Source in /tmp/pip-wheel-lvql__dl/ispyb_517d92a33ba941d8ba1730780c31fad4 has version 6.12.0, which satisfies requirement ispyb==6.12.0 from https://files.pythonhosted.org/packages/88/09/d49049c896ff5a652c5e7db920e8b71da4fa72f2f899d228d9a3fa5e5afe/ispyb-6.12.0.tar.gz#sha256=d550d987c9cb6ff30510e333efccaf924ff40fd2b4ddc3b045c31df850062ffa 2022-08-11T11:44:34,083 Removed ispyb==6.12.0 from https://files.pythonhosted.org/packages/88/09/d49049c896ff5a652c5e7db920e8b71da4fa72f2f899d228d9a3fa5e5afe/ispyb-6.12.0.tar.gz#sha256=d550d987c9cb6ff30510e333efccaf924ff40fd2b4ddc3b045c31df850062ffa from build tracker '/tmp/pip-build-tracker-k2g31ccy' 2022-08-11T11:44:34,096 Created temporary directory: /tmp/pip-unpack-hjocargt 2022-08-11T11:44:34,098 Building wheels for collected packages: ispyb 2022-08-11T11:44:34,108 Created temporary directory: /tmp/pip-wheel-dzwc1aq4 2022-08-11T11:44:34,109 Destination directory: /tmp/pip-wheel-dzwc1aq4 2022-08-11T11:44:34,114 Building wheel for ispyb (pyproject.toml): started 2022-08-11T11:44:34,116 Running command Building wheel for ispyb (pyproject.toml) 2022-08-11T11:44:38,222 running bdist_wheel 2022-08-11T11:44:39,461 running build 2022-08-11T11:44:39,461 running build_py 2022-08-11T11:44:40,099 creating build 2022-08-11T11:44:40,100 creating build/lib 2022-08-11T11:44:40,101 creating build/lib/ispyb 2022-08-11T11:44:40,103 copying src/ispyb/__init__.py -> build/lib/ispyb 2022-08-11T11:44:40,107 copying src/ispyb/factory.py -> build/lib/ispyb 2022-08-11T11:44:40,111 copying src/ispyb/strictordereddict.py -> build/lib/ispyb 2022-08-11T11:44:40,115 copying src/ispyb/xmltools.py -> build/lib/ispyb 2022-08-11T11:44:40,121 creating build/lib/ispyb/ws 2022-08-11T11:44:40,122 copying src/ispyb/ws/__init__.py -> build/lib/ispyb/ws 2022-08-11T11:44:40,126 creating build/lib/ispyb/sqlalchemy 2022-08-11T11:44:40,128 copying src/ispyb/sqlalchemy/__init__.py -> build/lib/ispyb/sqlalchemy 2022-08-11T11:44:40,133 copying src/ispyb/sqlalchemy/_auto_db_schema.py -> build/lib/ispyb/sqlalchemy 2022-08-11T11:44:40,148 creating build/lib/ispyb/cli 2022-08-11T11:44:40,150 copying src/ispyb/cli/__init__.py -> build/lib/ispyb/cli 2022-08-11T11:44:40,153 copying src/ispyb/cli/last_data_collections_on.py -> build/lib/ispyb/cli 2022-08-11T11:44:40,157 copying src/ispyb/cli/job.py -> build/lib/ispyb/cli 2022-08-11T11:44:40,164 creating build/lib/ispyb/sp 2022-08-11T11:44:40,165 copying src/ispyb/sp/shipping.py -> build/lib/ispyb/sp 2022-08-11T11:44:40,169 copying src/ispyb/sp/__init__.py -> build/lib/ispyb/sp 2022-08-11T11:44:40,172 copying src/ispyb/sp/emacquisition.py -> build/lib/ispyb/sp 2022-08-11T11:44:40,176 copying src/ispyb/sp/mxacquisition.py -> build/lib/ispyb/sp 2022-08-11T11:44:40,182 copying src/ispyb/sp/acquisition.py -> build/lib/ispyb/sp 2022-08-11T11:44:40,186 copying src/ispyb/sp/mxscreening.py -> build/lib/ispyb/sp 2022-08-11T11:44:40,191 copying src/ispyb/sp/xtalimaging.py -> build/lib/ispyb/sp 2022-08-11T11:44:40,195 copying src/ispyb/sp/core.py -> build/lib/ispyb/sp 2022-08-11T11:44:40,200 copying src/ispyb/sp/mxprocessing.py -> build/lib/ispyb/sp 2022-08-11T11:44:40,206 creating build/lib/ispyb/connector 2022-08-11T11:44:40,207 copying src/ispyb/connector/__init__.py -> build/lib/ispyb/connector 2022-08-11T11:44:40,213 creating build/lib/ispyb/interface 2022-08-11T11:44:40,214 copying src/ispyb/interface/shipping.py -> build/lib/ispyb/interface 2022-08-11T11:44:40,218 copying src/ispyb/interface/__init__.py -> build/lib/ispyb/interface 2022-08-11T11:44:40,221 copying src/ispyb/interface/connection.py -> build/lib/ispyb/interface 2022-08-11T11:44:40,225 copying src/ispyb/interface/acquisition.py -> build/lib/ispyb/interface 2022-08-11T11:44:40,229 copying src/ispyb/interface/factory.py -> build/lib/ispyb/interface 2022-08-11T11:44:40,233 copying src/ispyb/interface/screening.py -> build/lib/ispyb/interface 2022-08-11T11:44:40,236 copying src/ispyb/interface/core.py -> build/lib/ispyb/interface 2022-08-11T11:44:40,240 copying src/ispyb/interface/processing.py -> build/lib/ispyb/interface 2022-08-11T11:44:40,244 copying src/ispyb/interface/dataarea.py -> build/lib/ispyb/interface 2022-08-11T11:44:40,250 creating build/lib/ispyb/model 2022-08-11T11:44:40,252 copying src/ispyb/model/__init__.py -> build/lib/ispyb/model 2022-08-11T11:44:40,256 copying src/ispyb/model/sample.py -> build/lib/ispyb/model 2022-08-11T11:44:40,260 copying src/ispyb/model/gridinfo.py -> build/lib/ispyb/model 2022-08-11T11:44:40,263 copying src/ispyb/model/container.py -> build/lib/ispyb/model 2022-08-11T11:44:40,267 copying src/ispyb/model/interface.py -> build/lib/ispyb/model 2022-08-11T11:44:40,271 copying src/ispyb/model/detector.py -> build/lib/ispyb/model 2022-08-11T11:44:40,274 copying src/ispyb/model/samplegroup.py -> build/lib/ispyb/model 2022-08-11T11:44:40,278 copying src/ispyb/model/processingjob.py -> build/lib/ispyb/model 2022-08-11T11:44:40,283 copying src/ispyb/model/integration.py -> build/lib/ispyb/model 2022-08-11T11:44:40,287 copying src/ispyb/model/image_quality_indicators.py -> build/lib/ispyb/model 2022-08-11T11:44:40,291 copying src/ispyb/model/screening.py -> build/lib/ispyb/model 2022-08-11T11:44:40,296 copying src/ispyb/model/__future__.py -> build/lib/ispyb/model 2022-08-11T11:44:40,301 copying src/ispyb/model/processingprogram.py -> build/lib/ispyb/model 2022-08-11T11:44:40,304 copying src/ispyb/model/datacollection.py -> build/lib/ispyb/model 2022-08-11T11:44:40,309 copying src/ispyb/model/pdb.py -> build/lib/ispyb/model 2022-08-11T11:44:40,314 creating build/lib/ispyb/connector/ws 2022-08-11T11:44:40,315 copying src/ispyb/connector/ws/__init__.py -> build/lib/ispyb/connector/ws 2022-08-11T11:44:40,319 copying src/ispyb/connector/ws/main.py -> build/lib/ispyb/connector/ws 2022-08-11T11:44:40,323 creating build/lib/ispyb/connector/mysqlsp 2022-08-11T11:44:40,325 copying src/ispyb/connector/mysqlsp/__init__.py -> build/lib/ispyb/connector/mysqlsp 2022-08-11T11:44:40,328 copying src/ispyb/connector/mysqlsp/main.py -> build/lib/ispyb/connector/mysqlsp 2022-08-11T11:44:40,332 running egg_info 2022-08-11T11:44:41,616 writing src/ispyb.egg-info/PKG-INFO 2022-08-11T11:44:42,257 writing dependency_links to src/ispyb.egg-info/dependency_links.txt 2022-08-11T11:44:44,035 writing entry points to src/ispyb.egg-info/entry_points.txt 2022-08-11T11:44:45,224 writing requirements to src/ispyb.egg-info/requires.txt 2022-08-11T11:44:45,817 writing top-level names to src/ispyb.egg-info/top_level.txt 2022-08-11T11:44:45,876 reading manifest file 'src/ispyb.egg-info/SOURCES.txt' 2022-08-11T11:44:45,883 reading manifest template 'MANIFEST.in' 2022-08-11T11:44:45,886 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2022-08-11T11:44:45,887 % (opt, underscore_opt) 2022-08-11T11:44:45,887 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'project-urls' will not be supported in future versions. Please use the underscore name 'project_urls' instead 2022-08-11T11:44:45,887 % (opt, underscore_opt) 2022-08-11T11:44:45,888 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-08-11T11:44:45,888 warning: no previously-included files matching '*.py[co]' found under directory '*' 2022-08-11T11:44:45,889 adding license file 'LICENSE.md' 2022-08-11T11:44:45,899 writing manifest file 'src/ispyb.egg-info/SOURCES.txt' 2022-08-11T11:44:45,919 running build_scripts 2022-08-11T11:44:45,919 creating build/scripts-3.7 2022-08-11T11:44:45,921 copying and adjusting bin/dimple2ispyb.py -> build/scripts-3.7 2022-08-11T11:44:45,925 copying and adjusting bin/mxdatareduction2ispyb.py -> build/scripts-3.7 2022-08-11T11:44:45,927 changing mode of build/scripts-3.7/dimple2ispyb.py from 644 to 755 2022-08-11T11:44:45,928 changing mode of build/scripts-3.7/mxdatareduction2ispyb.py from 644 to 755 2022-08-11T11:44:47,198 installing to build/bdist.linux-armv7l/wheel 2022-08-11T11:44:47,199 running install 2022-08-11T11:44:47,261 running install_lib 2022-08-11T11:44:47,898 creating build/bdist.linux-armv7l 2022-08-11T11:44:47,899 creating build/bdist.linux-armv7l/wheel 2022-08-11T11:44:47,902 creating build/bdist.linux-armv7l/wheel/ispyb 2022-08-11T11:44:47,905 creating build/bdist.linux-armv7l/wheel/ispyb/ws 2022-08-11T11:44:47,907 copying build/lib/ispyb/ws/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb/ws 2022-08-11T11:44:47,910 copying build/lib/ispyb/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb 2022-08-11T11:44:47,915 creating build/bdist.linux-armv7l/wheel/ispyb/sqlalchemy 2022-08-11T11:44:47,916 copying build/lib/ispyb/sqlalchemy/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb/sqlalchemy 2022-08-11T11:44:47,921 copying build/lib/ispyb/sqlalchemy/_auto_db_schema.py -> build/bdist.linux-armv7l/wheel/ispyb/sqlalchemy 2022-08-11T11:44:47,935 creating build/bdist.linux-armv7l/wheel/ispyb/cli 2022-08-11T11:44:47,937 copying build/lib/ispyb/cli/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb/cli 2022-08-11T11:44:47,941 copying build/lib/ispyb/cli/last_data_collections_on.py -> build/bdist.linux-armv7l/wheel/ispyb/cli 2022-08-11T11:44:47,946 copying build/lib/ispyb/cli/job.py -> build/bdist.linux-armv7l/wheel/ispyb/cli 2022-08-11T11:44:47,953 creating build/bdist.linux-armv7l/wheel/ispyb/sp 2022-08-11T11:44:47,955 copying build/lib/ispyb/sp/shipping.py -> build/bdist.linux-armv7l/wheel/ispyb/sp 2022-08-11T11:44:47,960 copying build/lib/ispyb/sp/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb/sp 2022-08-11T11:44:47,963 copying build/lib/ispyb/sp/emacquisition.py -> build/bdist.linux-armv7l/wheel/ispyb/sp 2022-08-11T11:44:47,968 copying build/lib/ispyb/sp/mxacquisition.py -> build/bdist.linux-armv7l/wheel/ispyb/sp 2022-08-11T11:44:47,973 copying build/lib/ispyb/sp/acquisition.py -> build/bdist.linux-armv7l/wheel/ispyb/sp 2022-08-11T11:44:47,978 copying build/lib/ispyb/sp/mxscreening.py -> build/bdist.linux-armv7l/wheel/ispyb/sp 2022-08-11T11:44:47,983 copying build/lib/ispyb/sp/xtalimaging.py -> build/bdist.linux-armv7l/wheel/ispyb/sp 2022-08-11T11:44:47,987 copying build/lib/ispyb/sp/core.py -> build/bdist.linux-armv7l/wheel/ispyb/sp 2022-08-11T11:44:47,992 copying build/lib/ispyb/sp/mxprocessing.py -> build/bdist.linux-armv7l/wheel/ispyb/sp 2022-08-11T11:44:47,997 copying build/lib/ispyb/factory.py -> build/bdist.linux-armv7l/wheel/ispyb 2022-08-11T11:44:48,002 creating build/bdist.linux-armv7l/wheel/ispyb/connector 2022-08-11T11:44:48,005 creating build/bdist.linux-armv7l/wheel/ispyb/connector/ws 2022-08-11T11:44:48,007 copying build/lib/ispyb/connector/ws/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb/connector/ws 2022-08-11T11:44:48,011 copying build/lib/ispyb/connector/ws/main.py -> build/bdist.linux-armv7l/wheel/ispyb/connector/ws 2022-08-11T11:44:48,015 copying build/lib/ispyb/connector/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb/connector 2022-08-11T11:44:48,019 creating build/bdist.linux-armv7l/wheel/ispyb/connector/mysqlsp 2022-08-11T11:44:48,021 copying build/lib/ispyb/connector/mysqlsp/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb/connector/mysqlsp 2022-08-11T11:44:48,024 copying build/lib/ispyb/connector/mysqlsp/main.py -> build/bdist.linux-armv7l/wheel/ispyb/connector/mysqlsp 2022-08-11T11:44:48,030 creating build/bdist.linux-armv7l/wheel/ispyb/interface 2022-08-11T11:44:48,032 copying build/lib/ispyb/interface/shipping.py -> build/bdist.linux-armv7l/wheel/ispyb/interface 2022-08-11T11:44:48,036 copying build/lib/ispyb/interface/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb/interface 2022-08-11T11:44:48,040 copying build/lib/ispyb/interface/connection.py -> build/bdist.linux-armv7l/wheel/ispyb/interface 2022-08-11T11:44:48,044 copying build/lib/ispyb/interface/acquisition.py -> build/bdist.linux-armv7l/wheel/ispyb/interface 2022-08-11T11:44:48,047 copying build/lib/ispyb/interface/factory.py -> build/bdist.linux-armv7l/wheel/ispyb/interface 2022-08-11T11:44:48,051 copying build/lib/ispyb/interface/screening.py -> build/bdist.linux-armv7l/wheel/ispyb/interface 2022-08-11T11:44:48,055 copying build/lib/ispyb/interface/core.py -> build/bdist.linux-armv7l/wheel/ispyb/interface 2022-08-11T11:44:48,059 copying build/lib/ispyb/interface/processing.py -> build/bdist.linux-armv7l/wheel/ispyb/interface 2022-08-11T11:44:48,063 copying build/lib/ispyb/interface/dataarea.py -> build/bdist.linux-armv7l/wheel/ispyb/interface 2022-08-11T11:44:48,067 copying build/lib/ispyb/strictordereddict.py -> build/bdist.linux-armv7l/wheel/ispyb 2022-08-11T11:44:48,072 creating build/bdist.linux-armv7l/wheel/ispyb/model 2022-08-11T11:44:48,074 copying build/lib/ispyb/model/__init__.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-08-11T11:44:48,078 copying build/lib/ispyb/model/sample.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-08-11T11:44:48,082 copying build/lib/ispyb/model/gridinfo.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-08-11T11:44:48,086 copying build/lib/ispyb/model/container.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-08-11T11:44:48,090 copying build/lib/ispyb/model/interface.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-08-11T11:44:48,094 copying build/lib/ispyb/model/detector.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-08-11T11:44:48,098 copying build/lib/ispyb/model/samplegroup.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-08-11T11:44:48,102 copying build/lib/ispyb/model/processingjob.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-08-11T11:44:48,106 copying build/lib/ispyb/model/integration.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-08-11T11:44:48,111 copying build/lib/ispyb/model/image_quality_indicators.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-08-11T11:44:48,115 copying build/lib/ispyb/model/screening.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-08-11T11:44:48,120 copying build/lib/ispyb/model/__future__.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-08-11T11:44:48,126 copying build/lib/ispyb/model/processingprogram.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-08-11T11:44:48,130 copying build/lib/ispyb/model/datacollection.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-08-11T11:44:48,135 copying build/lib/ispyb/model/pdb.py -> build/bdist.linux-armv7l/wheel/ispyb/model 2022-08-11T11:44:48,139 copying build/lib/ispyb/xmltools.py -> build/bdist.linux-armv7l/wheel/ispyb 2022-08-11T11:44:48,143 running install_egg_info 2022-08-11T11:44:48,787 Copying src/ispyb.egg-info to build/bdist.linux-armv7l/wheel/ispyb-6.12.0-py3.7.egg-info 2022-08-11T11:44:48,810 running install_scripts 2022-08-11T11:44:48,925 creating build/bdist.linux-armv7l/wheel/ispyb-6.12.0.data 2022-08-11T11:44:48,927 creating build/bdist.linux-armv7l/wheel/ispyb-6.12.0.data/scripts 2022-08-11T11:44:48,929 copying build/scripts-3.7/dimple2ispyb.py -> build/bdist.linux-armv7l/wheel/ispyb-6.12.0.data/scripts 2022-08-11T11:44:48,934 copying build/scripts-3.7/mxdatareduction2ispyb.py -> build/bdist.linux-armv7l/wheel/ispyb-6.12.0.data/scripts 2022-08-11T11:44:48,938 changing mode of build/bdist.linux-armv7l/wheel/ispyb-6.12.0.data/scripts/dimple2ispyb.py to 755 2022-08-11T11:44:48,939 changing mode of build/bdist.linux-armv7l/wheel/ispyb-6.12.0.data/scripts/mxdatareduction2ispyb.py to 755 2022-08-11T11:44:48,982 adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*") 2022-08-11T11:44:48,991 creating build/bdist.linux-armv7l/wheel/ispyb-6.12.0.dist-info/WHEEL 2022-08-11T11:44:48,996 creating '/tmp/pip-wheel-dzwc1aq4/tmp41huqoic/ispyb-6.12.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-08-11T11:44:49,001 adding 'ispyb/__init__.py' 2022-08-11T11:44:49,004 adding 'ispyb/factory.py' 2022-08-11T11:44:49,006 adding 'ispyb/strictordereddict.py' 2022-08-11T11:44:49,010 adding 'ispyb/xmltools.py' 2022-08-11T11:44:49,013 adding 'ispyb/cli/__init__.py' 2022-08-11T11:44:49,018 adding 'ispyb/cli/job.py' 2022-08-11T11:44:49,021 adding 'ispyb/cli/last_data_collections_on.py' 2022-08-11T11:44:49,024 adding 'ispyb/connector/__init__.py' 2022-08-11T11:44:49,028 adding 'ispyb/connector/mysqlsp/__init__.py' 2022-08-11T11:44:49,030 adding 'ispyb/connector/mysqlsp/main.py' 2022-08-11T11:44:49,034 adding 'ispyb/connector/ws/__init__.py' 2022-08-11T11:44:49,036 adding 'ispyb/connector/ws/main.py' 2022-08-11T11:44:49,040 adding 'ispyb/interface/__init__.py' 2022-08-11T11:44:49,042 adding 'ispyb/interface/acquisition.py' 2022-08-11T11:44:49,044 adding 'ispyb/interface/connection.py' 2022-08-11T11:44:49,046 adding 'ispyb/interface/core.py' 2022-08-11T11:44:49,048 adding 'ispyb/interface/dataarea.py' 2022-08-11T11:44:49,050 adding 'ispyb/interface/factory.py' 2022-08-11T11:44:49,053 adding 'ispyb/interface/processing.py' 2022-08-11T11:44:49,055 adding 'ispyb/interface/screening.py' 2022-08-11T11:44:49,056 adding 'ispyb/interface/shipping.py' 2022-08-11T11:44:49,062 adding 'ispyb/model/__future__.py' 2022-08-11T11:44:49,065 adding 'ispyb/model/__init__.py' 2022-08-11T11:44:49,068 adding 'ispyb/model/container.py' 2022-08-11T11:44:49,071 adding 'ispyb/model/datacollection.py' 2022-08-11T11:44:49,074 adding 'ispyb/model/detector.py' 2022-08-11T11:44:49,077 adding 'ispyb/model/gridinfo.py' 2022-08-11T11:44:49,080 adding 'ispyb/model/image_quality_indicators.py' 2022-08-11T11:44:49,083 adding 'ispyb/model/integration.py' 2022-08-11T11:44:49,085 adding 'ispyb/model/interface.py' 2022-08-11T11:44:49,087 adding 'ispyb/model/pdb.py' 2022-08-11T11:44:49,091 adding 'ispyb/model/processingjob.py' 2022-08-11T11:44:49,094 adding 'ispyb/model/processingprogram.py' 2022-08-11T11:44:49,096 adding 'ispyb/model/sample.py' 2022-08-11T11:44:49,099 adding 'ispyb/model/samplegroup.py' 2022-08-11T11:44:49,102 adding 'ispyb/model/screening.py' 2022-08-11T11:44:49,106 adding 'ispyb/sp/__init__.py' 2022-08-11T11:44:49,109 adding 'ispyb/sp/acquisition.py' 2022-08-11T11:44:49,112 adding 'ispyb/sp/core.py' 2022-08-11T11:44:49,115 adding 'ispyb/sp/emacquisition.py' 2022-08-11T11:44:49,118 adding 'ispyb/sp/mxacquisition.py' 2022-08-11T11:44:49,122 adding 'ispyb/sp/mxprocessing.py' 2022-08-11T11:44:49,125 adding 'ispyb/sp/mxscreening.py' 2022-08-11T11:44:49,127 adding 'ispyb/sp/shipping.py' 2022-08-11T11:44:49,130 adding 'ispyb/sp/xtalimaging.py' 2022-08-11T11:44:49,134 adding 'ispyb/sqlalchemy/__init__.py' 2022-08-11T11:44:49,177 adding 'ispyb/sqlalchemy/_auto_db_schema.py' 2022-08-11T11:44:49,184 adding 'ispyb/ws/__init__.py' 2022-08-11T11:44:49,189 adding 'ispyb-6.12.0.data/scripts/dimple2ispyb.py' 2022-08-11T11:44:49,192 adding 'ispyb-6.12.0.data/scripts/mxdatareduction2ispyb.py' 2022-08-11T11:44:49,199 adding 'ispyb-6.12.0.dist-info/LICENSE.md' 2022-08-11T11:44:49,201 adding 'ispyb-6.12.0.dist-info/METADATA' 2022-08-11T11:44:49,202 adding 'ispyb-6.12.0.dist-info/WHEEL' 2022-08-11T11:44:49,204 adding 'ispyb-6.12.0.dist-info/entry_points.txt' 2022-08-11T11:44:49,206 adding 'ispyb-6.12.0.dist-info/top_level.txt' 2022-08-11T11:44:49,209 adding 'ispyb-6.12.0.dist-info/RECORD' 2022-08-11T11:44:49,215 removing build/bdist.linux-armv7l/wheel 2022-08-11T11:44:49,514 Building wheel for ispyb (pyproject.toml): finished with status 'done' 2022-08-11T11:44:49,532 Created wheel for ispyb: filename=ispyb-6.12.0-py3-none-any.whl size=95244 sha256=5ffb7c0a9346132b27b8b00b5379a67dc003c4308c26c9ec4459e6e783246669 2022-08-11T11:44:49,534 Stored in directory: /tmp/pip-ephem-wheel-cache-t2unni5d/wheels/d7/d4/8a/a3ad79f04769fe7afc5d10fd5f95e14444a177f4f41971f2be 2022-08-11T11:44:49,560 Successfully built ispyb 2022-08-11T11:44:49,575 Removed build tracker: '/tmp/pip-build-tracker-k2g31ccy'