2022-08-11T20:21:24,433 Created temporary directory: /tmp/pip-ephem-wheel-cache-gwbmw_1j 2022-08-11T20:21:24,439 Created temporary directory: /tmp/pip-build-tracker-a0u_tsfs 2022-08-11T20:21:24,440 Initialized build tracking at /tmp/pip-build-tracker-a0u_tsfs 2022-08-11T20:21:24,440 Created build tracker: /tmp/pip-build-tracker-a0u_tsfs 2022-08-11T20:21:24,441 Entered build tracker: /tmp/pip-build-tracker-a0u_tsfs 2022-08-11T20:21:24,442 Created temporary directory: /tmp/pip-wheel-zzy8r9rk 2022-08-11T20:21:24,513 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-11T20:21:24,521 2 location(s) to search for versions of genovi: 2022-08-11T20:21:24,521 * https://pypi.org/simple/genovi/ 2022-08-11T20:21:24,521 * https://www.piwheels.org/simple/genovi/ 2022-08-11T20:21:24,522 Fetching project page and analyzing links: https://pypi.org/simple/genovi/ 2022-08-11T20:21:24,523 Getting page https://pypi.org/simple/genovi/ 2022-08-11T20:21:24,526 Found index url 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https://files.pythonhosted.org/packages/39/3f/bc562c9d7e22a8eb9a35c9f33b759876664a69705b0a84df52de7724d451/GenoVi-0.1.3.tar.gz#sha256=81fdb5decc10b435125d70d98bd5c32e1a9b996208f8d77622302d421df60656 (from https://pypi.org/simple/genovi/), version: 0.1.3 2022-08-11T20:21:24,735 Found link https://files.pythonhosted.org/packages/94/ba/cbd50149cd30d8a3d067abe59759972644b3d3ae0d0f90ba90314d0a70d0/GenoVi-0.1.4.tar.gz#sha256=34d670d7d2a69a11e996aa97fcf617505b6117fd2626ceeea11cca062c3b21a5 (from https://pypi.org/simple/genovi/), version: 0.1.4 2022-08-11T20:21:24,736 Found link https://files.pythonhosted.org/packages/f9/8f/f7ea3ff262830922289049cc11779abe81cf8f4756ba6a3c89a14f191f8a/GenoVi-0.1.5.tar.gz#sha256=1744bdf9fc764a52e8a186beae36681e361b8aedc1db59e656568ae5e66f7505 (from https://pypi.org/simple/genovi/), version: 0.1.5 2022-08-11T20:21:24,737 Found link 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https://files.pythonhosted.org/packages/d3/cd/c007e857caab09d4c95bd2f2f08bb189df9e3abcd33938cdfbd7ac4682be/GenoVi-0.1.9.tar.gz#sha256=1b2cb353ee59afbeba082e6e5a23717c2057b0da8b9a31006e9c906ee8ad4ee6 (from https://pypi.org/simple/genovi/), version: 0.1.9 2022-08-11T20:21:24,740 Found link https://files.pythonhosted.org/packages/fd/1a/3be34a386beee7338d660a09f22b75a96d05dab383e118e32ceb1da7f86e/genovi-0.1.10.tar.gz#sha256=bfa49aa5ca07105a1e41cce204bbc8924cc5d8b2fc1cd2db467a4a59d53c5d7c (from https://pypi.org/simple/genovi/), version: 0.1.10 2022-08-11T20:21:24,741 Found link https://files.pythonhosted.org/packages/b7/87/ef77e4600de14b3921372af30102771143909850fdc54152b41d6e4bcfeb/genovi-0.1.11.tar.gz#sha256=9872c82f96031e85fca2bbf4038d85f3b9060378b6b63dba1e2127cd1555e044 (from https://pypi.org/simple/genovi/), version: 0.1.11 2022-08-11T20:21:24,741 Found link https://files.pythonhosted.org/packages/ba/64/02d3fe054de0fc2f03510a7cacad497ba02eec7d0b87a9fcb3a392001458/genovi-0.1.12.tar.gz#sha256=8467da5558b1e2dd1dabe2c62a15dd70949da123651fa515c0a4ffdac5be6b27 (from https://pypi.org/simple/genovi/), version: 0.1.12 2022-08-11T20:21:24,742 Found link https://files.pythonhosted.org/packages/38/51/aff4397b6cbd2b9cdd3d4ebc6cc1ab8cb7d23c61cca3881c1cd4ca466762/genovi-0.1.13.tar.gz#sha256=bf4e494d04cee3842cc59c3348a7a39b623e730813777d80f8387aa81cbe9240 (from https://pypi.org/simple/genovi/), version: 0.1.13 2022-08-11T20:21:24,743 Found link https://files.pythonhosted.org/packages/6f/c5/02474d7e10a44cf05dcd719384653a50c4fe999ec68c064bdd64f4c993a5/genovi-0.1.14.tar.gz#sha256=4a255d0388690ccbca65bcf59b435b3aaa35de00aab6ebc7b03354f56b7216ca (from https://pypi.org/simple/genovi/), version: 0.1.14 2022-08-11T20:21:24,744 Found link https://files.pythonhosted.org/packages/e1/01/9f3fef2a3e6a6430d9b5ce8f400f3952b0b33d388cd99d0c5accc3abc4b2/genovi-0.2.0.tar.gz#sha256=f58d290cd15eb8472c0917958f2bf963fae92e92d52ae0a5f86a1ca5418a505f (from https://pypi.org/simple/genovi/), version: 0.2.0 2022-08-11T20:21:24,744 Found link https://files.pythonhosted.org/packages/b9/c1/113f179e4b80887710fde0cd026d10e73e72a32cedbb8d8d720319174868/genovi-0.2.1.tar.gz#sha256=a83c33b8cf9c309e9d5afcc0fc8ae22ea2abdf11d97a7748f720c1d539267607 (from https://pypi.org/simple/genovi/), version: 0.2.1 2022-08-11T20:21:24,745 Found link https://files.pythonhosted.org/packages/dc/b6/e1b84d3a4e775cbfd875c83055d0f6c22f25c94fcfbcd4484039ddb65e3c/genovi-0.2.2.tar.gz#sha256=c4699d52d2613e72ca018c37b06b96f17724ada10bf28f954397668848299798 (from https://pypi.org/simple/genovi/), version: 0.2.2 2022-08-11T20:21:24,746 Found link https://files.pythonhosted.org/packages/9f/79/00a50e3f7a8ddc8e8d86bb9eae23adc48a50bbfb81245f68de087c9af37e/genovi-0.2.3.tar.gz#sha256=80c1d41f3cdfd18e9325145229f02020d3d67db6a7c07fb0839c8a24759fe3cb (from https://pypi.org/simple/genovi/), version: 0.2.3 2022-08-11T20:21:24,747 Found link https://files.pythonhosted.org/packages/e6/a9/9aa986ab956bd22915e8a6d5b49d674a49a5e6d9d1093a8048a56398bf6a/genovi-0.2.4.tar.gz#sha256=85984337d1134f4d9a4663e0ce686eb3157a362e87e6fdbc32514744fada8737 (from https://pypi.org/simple/genovi/), version: 0.2.4 2022-08-11T20:21:24,747 Found link https://files.pythonhosted.org/packages/47/3f/f0c82b7a8cf5c29e79ac58de0fb9ea339e123ce6f35ba984e5618f226005/genovi-0.2.5.tar.gz#sha256=5d69c138e7577f12e16b9344c4a5ee586a13924bc32645603f948aceaeb5b252 (from https://pypi.org/simple/genovi/), version: 0.2.5 2022-08-11T20:21:24,748 Found link https://files.pythonhosted.org/packages/21/be/3846ce45858368c7671c70c20009cd9be8bb63429077a38ac74fd7809ef2/genovi-0.2.7.tar.gz#sha256=82dd7ff8606cc89e3f62288083b83020f334923905615191204b31b5c323f35e (from https://pypi.org/simple/genovi/), version: 0.2.7 2022-08-11T20:21:24,749 Found link https://files.pythonhosted.org/packages/61/f1/8169934fdd91c777af024789c964dad4c89265a25237e3839f9d4fb329a0/genovi-0.2.8.tar.gz#sha256=fed609ec68843ebd1cc38ffd74832cb3e9c4cad4c8eb590093f05154456224d5 (from https://pypi.org/simple/genovi/), version: 0.2.8 2022-08-11T20:21:24,749 Found link https://files.pythonhosted.org/packages/68/36/0e47e71b1f513f2c6e58b789350122b34c755cb4c6228ccf694af5a59ece/genovi-0.2.9.tar.gz#sha256=05e97d2646aa661713723a6220c8ecfce127622f97518a33a1856495657d6d42 (from https://pypi.org/simple/genovi/), version: 0.2.9 2022-08-11T20:21:24,750 Found link https://files.pythonhosted.org/packages/aa/0b/8b02c29209357ddb84073410d85490933354c751b45af0d5d3d7ac899cfc/genovi-0.2.10.tar.gz#sha256=86e9cd55c4045cd13a93535365ecc1b199b45674486230048721a24fc43688ef (from https://pypi.org/simple/genovi/), version: 0.2.10 2022-08-11T20:21:24,751 Found link https://files.pythonhosted.org/packages/d1/3e/6faadc869df781762380a57330ad9f5645bb0d02bf6d134adacb24c42d43/genovi-0.2.11.tar.gz#sha256=fc865ee6c00ca292c77c9cc97aaf8eba61c52e8c1712b8e08bd3cc4180b7f322 (from https://pypi.org/simple/genovi/), version: 0.2.11 2022-08-11T20:21:24,752 Fetching project page and analyzing links: https://www.piwheels.org/simple/genovi/ 2022-08-11T20:21:24,753 Getting page https://www.piwheels.org/simple/genovi/ 2022-08-11T20:21:24,755 Found index url https://www.piwheels.org/simple 2022-08-11T20:21:24,991 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.10-py3-none-any.whl#sha256=b692d8fcacebae0b551abc0ac0d535f44d5cebcb901467329bef75c5ec8f4221 (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:24,992 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.9-py3-none-any.whl#sha256=be1f6746919ce0b4ad3caa40d8c3632d68fe194f85832a8c7f9f61ff8bdbd6ad (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:24,992 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.8-py3-none-any.whl#sha256=755192be4c5e1940f0d1a48897927a4e1beab6149b8180ccb13e24f71e54d09c (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:24,993 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.7-py3-none-any.whl#sha256=00802380da5aa14459c624ca7f267c2a3e92bee536e28f630149a76951f76ca8 (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:24,994 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.5-py3-none-any.whl#sha256=3053498c2d11887ff5167b55481d4ff672fe976271acf09ab1778fa0d2880e1a (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:24,994 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.4-py3-none-any.whl#sha256=66ad89b0bb34ba728fe883fb4d09ac35cba8640ff940f3552c2b2068e6550521 (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:24,995 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.3-py3-none-any.whl#sha256=6c07435fc6bbc3d07cdc22d85c5d926088f5f49f5603ebaadba5897cd02d706e (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:24,995 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.2-py3-none-any.whl#sha256=444bfc444e37538289537fb00c1db1fa23eae893f5618387b677cdfbdcd79125 (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:24,996 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.1-py3-none-any.whl#sha256=a0821540c111ff88aed81d98be243fdd00acfef15eccce78ca55100731bb7ea4 (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:24,996 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.0-py3-none-any.whl#sha256=69ac6bd8020c036362409139e8b8cc751fbda31e2a18191f1d836eff9107ded9 (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:24,997 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.1.14-py3-none-any.whl#sha256=3b3740e3cf06d886e4c08e3ff8b3cb7bbdfce95d7c2f39a8b52ba60377454d33 (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:24,997 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.1.13-py3-none-any.whl#sha256=80d37d113ad10058c7751c0bd39e212d919b28df23a351fa41f8d36828095b06 (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:24,998 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.1.12-py3-none-any.whl#sha256=a0a616960db2d66dd272e376e3e51ae6534e139cf6cd6e059a90e7f38a52defc (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:24,998 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.1.11-py3-none-any.whl#sha256=f31af5e801ca94456cc163f8e583014147e7d82aa42edce01e08baf47d1b3764 (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:24,999 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.1.10-py3-none-any.whl#sha256=66375107b070e9bda83b88c0960e4ea213f78ec10869c017c8a178156361e0d4 (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:25,000 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/GenoVi-0.1.9-py3-none-any.whl#sha256=872d4aaf69f70129fc66bcc995e39c04edb99755b09616ea052d8bc07394f1da (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:25,000 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.1.8-py3-none-any.whl#sha256=4e3526bace0a2bdb36257218c092fdf2b4f89b9357e368fed9a1cbd35b5df46a (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:25,001 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.1.7-py3-none-any.whl#sha256=c25cda7251672edf1463d5d55be59e45ef509c8b52cd544eebe7eeb91eb97396 (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:25,001 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/GenoVi-0.1.6-py3-none-any.whl#sha256=715e0c036ad9630f1a8d2e8e07a6721b7550bd14ff6dc9c672912e55fc2e9d48 (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:25,002 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/GenoVi-0.1.5-py3-none-any.whl#sha256=db788f0c5588064ea710bfac623769fa9381bd9f462ed4e3abcbec4674a5cf54 (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:25,002 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/GenoVi-0.1.4-py3-none-any.whl#sha256=6a2f5e571c6645a03bfd6913a7368ef70f413891cf615902e49cc433ac07979c (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:25,003 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/GenoVi-0.1.3-py3-none-any.whl#sha256=b9f56b70625623794248440671e3c9b1f88f8b9a9f2a5b6f234ca84e55d3e45f (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:25,003 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/GenoVi-0.1.2-py3-none-any.whl#sha256=a3395463541352b4afdb6bf7755deae4716e267e696aebd006f22930449c7950 (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:25,004 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/GenoVi-0.1.1-py3-none-any.whl#sha256=c623884511043e93b73512ce7aa137d9b08a77fee1bc0d18a31211c174b89259 (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:25,004 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/GenoVi-0.1-py3-none-any.whl#sha256=dd45e4f285e679551393c388a2c9ef23ce3e99f86557a385d831baab425ed51c (from https://www.piwheels.org/simple/genovi/) 2022-08-11T20:21:25,005 Skipping link: not a file: https://www.piwheels.org/simple/genovi/ 2022-08-11T20:21:25,006 Skipping link: not a file: https://pypi.org/simple/genovi/ 2022-08-11T20:21:25,048 Given no hashes to check 1 links for project 'genovi': discarding no candidates 2022-08-11T20:21:25,080 Collecting genovi==0.2.11 2022-08-11T20:21:25,084 Created temporary directory: /tmp/pip-unpack-ppljg62y 2022-08-11T20:21:25,447 Downloading genovi-0.2.11.tar.gz (152 kB) 2022-08-11T20:21:25,671 Added genovi==0.2.11 from https://files.pythonhosted.org/packages/d1/3e/6faadc869df781762380a57330ad9f5645bb0d02bf6d134adacb24c42d43/genovi-0.2.11.tar.gz#sha256=fc865ee6c00ca292c77c9cc97aaf8eba61c52e8c1712b8e08bd3cc4180b7f322 to build tracker '/tmp/pip-build-tracker-a0u_tsfs' 2022-08-11T20:21:25,675 Running setup.py (path:/tmp/pip-wheel-zzy8r9rk/genovi_499400da2b6b49bb91752a95a0576abb/setup.py) egg_info for package genovi 2022-08-11T20:21:25,676 Created temporary directory: /tmp/pip-pip-egg-info-lsg1io6k 2022-08-11T20:21:25,677 Preparing metadata (setup.py): started 2022-08-11T20:21:25,679 Running command python setup.py egg_info 2022-08-11T20:21:34,602 scripts __init__.py 2022-08-11T20:21:34,604 #from .GenoVi import change_background, visualiseGenome, get_args, main 2022-08-11T20:21:34,605 #from .addText import addText 2022-08-11T20:21:34,605 #from .colors import parseColors 2022-08-11T20:21:34,605 #from .create_raw import getArgs, listdir_r, ends_sorted, create_kar, create_feature, base_complete, base, get_categories, create_kar_complete, create_feature_complete, new_loc, write_cog_files, write_lines, createRaw 2022-08-11T20:21:34,606 #from .createConf import create_conf, create_conf_main 2022-08-11T20:21:34,606 #from .GC_analysis import get_args_, write_content, generate_result, makeGC, createGC 2022-08-11T20:21:34,607 #from .genbank2faa import modify_locus, genbankToFaa, mainFaa 2022-08-11T20:21:34,607 #from .genbank2fna import gbkToFna, mainFna 2022-08-11T20:21:34,608 #from .mergeImages import mergeImages 2022-08-11T20:21:34,609 #__all__ = ['change_background', 'visualiseGenome', 'get_args', 'main', 'addText', 'parseColors', 'getArgs', 2022-08-11T20:21:34,610 # 'listdir_r', 'ends_sorted', 'create_kar', 'create_feature', 'base_complete', 'base', 'get_categories', 2022-08-11T20:21:34,610 # 'create_kar_complete', 'create_feature_complete', 'new_loc', 'write_cog_files', 'write_lines', 2022-08-11T20:21:34,611 # 'createRaw', 'create_conf', 'create_conf_main', 'get_args_', 'write_content', 'generate_result', 2022-08-11T20:21:34,611 # 'makeGC', 'createGC', 'modify_locus', 'genbankToFaa', 'mainFaa', 'gbkToFna', 'mainFna', 'mergeImages', 2022-08-11T20:21:34,611 # '__version__' 2022-08-11T20:21:34,612 # ] 2022-08-11T20:21:34,612 __version__ = '0.2.11' 2022-08-11T20:21:34,613 __all__ = ['__version__'] 2022-08-11T20:21:34,613 running egg_info 2022-08-11T20:21:34,614 creating /tmp/pip-pip-egg-info-lsg1io6k/genovi.egg-info 2022-08-11T20:21:35,338 writing /tmp/pip-pip-egg-info-lsg1io6k/genovi.egg-info/PKG-INFO 2022-08-11T20:21:35,936 writing dependency_links to /tmp/pip-pip-egg-info-lsg1io6k/genovi.egg-info/dependency_links.txt 2022-08-11T20:21:37,722 writing entry points to /tmp/pip-pip-egg-info-lsg1io6k/genovi.egg-info/entry_points.txt 2022-08-11T20:21:38,914 writing requirements to /tmp/pip-pip-egg-info-lsg1io6k/genovi.egg-info/requires.txt 2022-08-11T20:21:39,512 writing top-level names to /tmp/pip-pip-egg-info-lsg1io6k/genovi.egg-info/top_level.txt 2022-08-11T20:21:39,514 writing manifest file '/tmp/pip-pip-egg-info-lsg1io6k/genovi.egg-info/SOURCES.txt' 2022-08-11T20:21:40,539 reading manifest file '/tmp/pip-pip-egg-info-lsg1io6k/genovi.egg-info/SOURCES.txt' 2022-08-11T20:21:40,542 reading manifest template 'MANIFEST.in' 2022-08-11T20:21:40,544 adding license file 'LICENSE.txt' 2022-08-11T20:21:40,550 writing manifest file '/tmp/pip-pip-egg-info-lsg1io6k/genovi.egg-info/SOURCES.txt' 2022-08-11T20:21:40,552 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2022-08-11T20:21:40,552 % (opt, underscore_opt) 2022-08-11T20:21:40,772 Preparing metadata (setup.py): finished with status 'done' 2022-08-11T20:21:40,783 Source in /tmp/pip-wheel-zzy8r9rk/genovi_499400da2b6b49bb91752a95a0576abb has version 0.2.11, which satisfies requirement genovi==0.2.11 from https://files.pythonhosted.org/packages/d1/3e/6faadc869df781762380a57330ad9f5645bb0d02bf6d134adacb24c42d43/genovi-0.2.11.tar.gz#sha256=fc865ee6c00ca292c77c9cc97aaf8eba61c52e8c1712b8e08bd3cc4180b7f322 2022-08-11T20:21:40,785 Removed genovi==0.2.11 from https://files.pythonhosted.org/packages/d1/3e/6faadc869df781762380a57330ad9f5645bb0d02bf6d134adacb24c42d43/genovi-0.2.11.tar.gz#sha256=fc865ee6c00ca292c77c9cc97aaf8eba61c52e8c1712b8e08bd3cc4180b7f322 from build tracker '/tmp/pip-build-tracker-a0u_tsfs' 2022-08-11T20:21:40,795 Created temporary directory: /tmp/pip-unpack-gw23zxew 2022-08-11T20:21:40,796 Building wheels for collected packages: genovi 2022-08-11T20:21:40,806 Created temporary directory: /tmp/pip-wheel-ji4cm1m8 2022-08-11T20:21:40,807 Building wheel for genovi (setup.py): started 2022-08-11T20:21:40,809 Destination directory: /tmp/pip-wheel-ji4cm1m8 2022-08-11T20:21:40,809 Running command python setup.py bdist_wheel 2022-08-11T20:21:43,390 scripts __init__.py 2022-08-11T20:21:43,391 #from .GenoVi import change_background, visualiseGenome, get_args, main 2022-08-11T20:21:43,392 #from .addText import addText 2022-08-11T20:21:43,392 #from .colors import parseColors 2022-08-11T20:21:43,392 #from .create_raw import getArgs, listdir_r, ends_sorted, create_kar, create_feature, base_complete, base, get_categories, create_kar_complete, create_feature_complete, new_loc, write_cog_files, write_lines, createRaw 2022-08-11T20:21:43,393 #from .createConf import create_conf, create_conf_main 2022-08-11T20:21:43,393 #from .GC_analysis import get_args_, write_content, generate_result, makeGC, createGC 2022-08-11T20:21:43,394 #from .genbank2faa import modify_locus, genbankToFaa, mainFaa 2022-08-11T20:21:43,394 #from .genbank2fna import gbkToFna, mainFna 2022-08-11T20:21:43,394 #from .mergeImages import mergeImages 2022-08-11T20:21:43,395 #__all__ = ['change_background', 'visualiseGenome', 'get_args', 'main', 'addText', 'parseColors', 'getArgs', 2022-08-11T20:21:43,396 # 'listdir_r', 'ends_sorted', 'create_kar', 'create_feature', 'base_complete', 'base', 'get_categories', 2022-08-11T20:21:43,396 # 'create_kar_complete', 'create_feature_complete', 'new_loc', 'write_cog_files', 'write_lines', 2022-08-11T20:21:43,397 # 'createRaw', 'create_conf', 'create_conf_main', 'get_args_', 'write_content', 'generate_result', 2022-08-11T20:21:43,397 # 'makeGC', 'createGC', 'modify_locus', 'genbankToFaa', 'mainFaa', 'gbkToFna', 'mainFna', 'mergeImages', 2022-08-11T20:21:43,397 # '__version__' 2022-08-11T20:21:43,398 # ] 2022-08-11T20:21:43,399 __version__ = '0.2.11' 2022-08-11T20:21:43,399 __all__ = ['__version__'] 2022-08-11T20:21:43,586 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2022-08-11T20:21:43,587 % (opt, underscore_opt) 2022-08-11T20:21:49,144 running bdist_wheel 2022-08-11T20:21:49,564 running build 2022-08-11T20:21:49,565 running build_py 2022-08-11T20:21:50,302 creating build 2022-08-11T20:21:50,303 creating build/lib 2022-08-11T20:21:50,305 creating build/lib/scripts 2022-08-11T20:21:50,308 copying scripts/__init__.py -> build/lib/scripts 2022-08-11T20:21:50,312 copying scripts/createConf.py -> build/lib/scripts 2022-08-11T20:21:50,318 copying scripts/create_tables.py -> build/lib/scripts 2022-08-11T20:21:50,322 copying scripts/mergeImages.py -> build/lib/scripts 2022-08-11T20:21:50,327 copying scripts/GenoVi.py -> build/lib/scripts 2022-08-11T20:21:50,332 copying scripts/colours.py -> build/lib/scripts 2022-08-11T20:21:50,336 copying scripts/genbank2faa.py -> build/lib/scripts 2022-08-11T20:21:50,340 copying scripts/GC_analysis.py -> build/lib/scripts 2022-08-11T20:21:50,344 copying scripts/addText.py -> build/lib/scripts 2022-08-11T20:21:50,349 copying scripts/genbank2fna.py -> build/lib/scripts 2022-08-11T20:21:50,352 copying scripts/create_raw.py -> build/lib/scripts 2022-08-11T20:21:50,356 running egg_info 2022-08-11T20:21:51,837 writing genovi.egg-info/PKG-INFO 2022-08-11T20:21:52,431 writing dependency_links to genovi.egg-info/dependency_links.txt 2022-08-11T20:21:54,204 writing entry points to genovi.egg-info/entry_points.txt 2022-08-11T20:21:55,383 writing requirements to genovi.egg-info/requires.txt 2022-08-11T20:21:55,978 writing top-level names to genovi.egg-info/top_level.txt 2022-08-11T20:21:56,122 reading manifest file 'genovi.egg-info/SOURCES.txt' 2022-08-11T20:21:56,127 reading manifest template 'MANIFEST.in' 2022-08-11T20:21:56,130 adding license file 'LICENSE.txt' 2022-08-11T20:21:56,136 writing manifest file 'genovi.egg-info/SOURCES.txt' 2022-08-11T20:21:56,141 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-11T20:21:56,142 ############################ 2022-08-11T20:21:56,142 # Package would be ignored # 2022-08-11T20:21:56,143 ############################ 2022-08-11T20:21:56,143 Python recognizes 'scripts.dataset' as an importable package, however it is 2022-08-11T20:21:56,143 included in the distribution as "data". 2022-08-11T20:21:56,143 This behavior is likely to change in future versions of setuptools (and 2022-08-11T20:21:56,144 therefore is considered deprecated). 2022-08-11T20:21:56,144 Please make sure that 'scripts.dataset' is included as a package by using 2022-08-11T20:21:56,145 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-11T20:21:56,145 You can read more about "package discovery" and "data files" on setuptools 2022-08-11T20:21:56,146 documentation page. 2022-08-11T20:21:56,146 !! 2022-08-11T20:21:56,147 check.warn(importable) 2022-08-11T20:21:56,149 creating build/lib/scripts/dataset 2022-08-11T20:21:56,151 copying scripts/dataset/cog-20.def.tab -> build/lib/scripts/dataset 2022-08-11T20:21:56,909 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-08-11T20:21:56,909 setuptools.SetuptoolsDeprecationWarning, 2022-08-11T20:21:57,647 installing to build/bdist.linux-armv7l/wheel 2022-08-11T20:21:57,648 running install 2022-08-11T20:21:57,709 running install_lib 2022-08-11T20:21:58,492 creating build/bdist.linux-armv7l 2022-08-11T20:21:58,494 creating build/bdist.linux-armv7l/wheel 2022-08-11T20:21:58,497 creating build/bdist.linux-armv7l/wheel/scripts 2022-08-11T20:21:58,500 copying build/lib/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/scripts 2022-08-11T20:21:58,504 copying build/lib/scripts/createConf.py -> build/bdist.linux-armv7l/wheel/scripts 2022-08-11T20:21:58,510 copying build/lib/scripts/create_tables.py -> build/bdist.linux-armv7l/wheel/scripts 2022-08-11T20:21:58,514 copying build/lib/scripts/mergeImages.py -> build/bdist.linux-armv7l/wheel/scripts 2022-08-11T20:21:58,519 copying build/lib/scripts/GenoVi.py -> build/bdist.linux-armv7l/wheel/scripts 2022-08-11T20:21:58,525 copying build/lib/scripts/colours.py -> build/bdist.linux-armv7l/wheel/scripts 2022-08-11T20:21:58,530 copying build/lib/scripts/genbank2faa.py -> build/bdist.linux-armv7l/wheel/scripts 2022-08-11T20:21:58,535 copying build/lib/scripts/GC_analysis.py -> build/bdist.linux-armv7l/wheel/scripts 2022-08-11T20:21:58,540 creating build/bdist.linux-armv7l/wheel/scripts/dataset 2022-08-11T20:21:58,542 copying build/lib/scripts/dataset/cog-20.def.tab -> build/bdist.linux-armv7l/wheel/scripts/dataset 2022-08-11T20:21:58,565 copying build/lib/scripts/addText.py -> build/bdist.linux-armv7l/wheel/scripts 2022-08-11T20:21:58,571 copying build/lib/scripts/genbank2fna.py -> build/bdist.linux-armv7l/wheel/scripts 2022-08-11T20:21:58,575 copying build/lib/scripts/create_raw.py -> build/bdist.linux-armv7l/wheel/scripts 2022-08-11T20:21:58,580 running install_egg_info 2022-08-11T20:21:59,318 Copying genovi.egg-info to build/bdist.linux-armv7l/wheel/genovi-0.2.11-py3.7.egg-info 2022-08-11T20:21:59,343 running install_scripts 2022-08-11T20:21:59,535 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2022-08-11T20:21:59,545 creating build/bdist.linux-armv7l/wheel/genovi-0.2.11.dist-info/WHEEL 2022-08-11T20:21:59,550 creating '/tmp/pip-wheel-ji4cm1m8/genovi-0.2.11-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-08-11T20:21:59,559 adding 'scripts/GC_analysis.py' 2022-08-11T20:21:59,566 adding 'scripts/GenoVi.py' 2022-08-11T20:21:59,569 adding 'scripts/__init__.py' 2022-08-11T20:21:59,574 adding 'scripts/addText.py' 2022-08-11T20:21:59,579 adding 'scripts/colours.py' 2022-08-11T20:21:59,586 adding 'scripts/createConf.py' 2022-08-11T20:21:59,594 adding 'scripts/create_raw.py' 2022-08-11T20:21:59,598 adding 'scripts/create_tables.py' 2022-08-11T20:21:59,602 adding 'scripts/genbank2faa.py' 2022-08-11T20:21:59,605 adding 'scripts/genbank2fna.py' 2022-08-11T20:21:59,609 adding 'scripts/mergeImages.py' 2022-08-11T20:21:59,749 adding 'scripts/dataset/cog-20.def.tab' 2022-08-11T20:21:59,759 adding 'genovi-0.2.11.dist-info/LICENSE.txt' 2022-08-11T20:21:59,762 adding 'genovi-0.2.11.dist-info/METADATA' 2022-08-11T20:21:59,764 adding 'genovi-0.2.11.dist-info/WHEEL' 2022-08-11T20:21:59,766 adding 'genovi-0.2.11.dist-info/entry_points.txt' 2022-08-11T20:21:59,768 adding 'genovi-0.2.11.dist-info/top_level.txt' 2022-08-11T20:21:59,770 adding 'genovi-0.2.11.dist-info/RECORD' 2022-08-11T20:21:59,779 removing build/bdist.linux-armv7l/wheel 2022-08-11T20:22:00,029 Building wheel for genovi (setup.py): finished with status 'done' 2022-08-11T20:22:00,040 Created wheel for genovi: filename=genovi-0.2.11-py3-none-any.whl size=157429 sha256=03fa8255fdd61ba26bb2625e1bdd06fb794b168c8876703504f12b6982aebc09 2022-08-11T20:22:00,042 Stored in directory: /tmp/pip-ephem-wheel-cache-gwbmw_1j/wheels/09/c2/71/d0a30772ca5689bafa3bd2e7767610559dd16b246aeb5ad35e 2022-08-11T20:22:00,066 Successfully built genovi 2022-08-11T20:22:00,084 Removed build tracker: '/tmp/pip-build-tracker-a0u_tsfs'