2022-08-12T02:23:12,855 Created temporary directory: /tmp/pip-ephem-wheel-cache-8op5hzqf
2022-08-12T02:23:12,861 Created temporary directory: /tmp/pip-build-tracker-ax3in1bt
2022-08-12T02:23:12,862 Initialized build tracking at /tmp/pip-build-tracker-ax3in1bt
2022-08-12T02:23:12,862 Created build tracker: /tmp/pip-build-tracker-ax3in1bt
2022-08-12T02:23:12,862 Entered build tracker: /tmp/pip-build-tracker-ax3in1bt
2022-08-12T02:23:12,863 Created temporary directory: /tmp/pip-wheel-di6a04yl
2022-08-12T02:23:12,935 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-08-12T02:23:12,944 2 location(s) to search for versions of bmk-cell-calling:
2022-08-12T02:23:12,944 * https://pypi.org/simple/bmk-cell-calling/
2022-08-12T02:23:12,944 * https://www.piwheels.org/simple/bmk-cell-calling/
2022-08-12T02:23:12,945 Fetching project page and analyzing links: https://pypi.org/simple/bmk-cell-calling/
2022-08-12T02:23:12,946 Getting page https://pypi.org/simple/bmk-cell-calling/
2022-08-12T02:23:12,950 Found index url https://pypi.org/simple
2022-08-12T02:23:13,068   Link requires a different Python (3.9.2 not in: '>=3.8, <=3.9'): https://files.pythonhosted.org/packages/32/e1/9fe0bb179cca0ab26bc1645f0a00a1462d120b1b704e9b1c1657648e27a1/bmk-cell-calling-0.2.0.tar.gz#sha256=29a77e583b28e393c81f1f493e9a493596021d2710433d6ef0eb0e939d4aaa29 (from https://pypi.org/simple/bmk-cell-calling/) (requires-python:>=3.8, <=3.9)
2022-08-12T02:23:13,069   Skipping link: 0.2.0 Requires-Python >=3.8, <=3.9: https://files.pythonhosted.org/packages/32/e1/9fe0bb179cca0ab26bc1645f0a00a1462d120b1b704e9b1c1657648e27a1/bmk-cell-calling-0.2.0.tar.gz#sha256=29a77e583b28e393c81f1f493e9a493596021d2710433d6ef0eb0e939d4aaa29 (from https://pypi.org/simple/bmk-cell-calling/) (requires-python:>=3.8, <=3.9)
2022-08-12T02:23:13,070   Found link https://files.pythonhosted.org/packages/d6/97/9a8db904494e740083d8c2f68f0a6739649d8724e220584c1a6c5c974b96/bmk-cell-calling-0.2.1.tar.gz#sha256=93114e20f7e1d870cacd785545ef628ffe1cc3dc923399ddcad3090ec7284da6 (from https://pypi.org/simple/bmk-cell-calling/) (requires-python:>=3.8, <3.10), version: 0.2.1
2022-08-12T02:23:13,072   Found link https://files.pythonhosted.org/packages/f5/46/3ea3833df96b66ba0c74f4e7f96a4cc9e4ff040ef34429199453c6d30d76/bmk-cell-calling-0.2.2.tar.gz#sha256=a56ee10478b58797dc8b4f27a5d086967830122894f029c7db39ab207f63ca5b (from https://pypi.org/simple/bmk-cell-calling/) (requires-python:>=3.8, <3.10), version: 0.2.2
2022-08-12T02:23:13,073 Fetching project page and analyzing links: https://www.piwheels.org/simple/bmk-cell-calling/
2022-08-12T02:23:13,073 Getting page https://www.piwheels.org/simple/bmk-cell-calling/
2022-08-12T02:23:13,075 Found index url https://www.piwheels.org/simple
2022-08-12T02:23:13,329 Skipping link: not a file: https://www.piwheels.org/simple/bmk-cell-calling/
2022-08-12T02:23:13,330 Skipping link: not a file: https://pypi.org/simple/bmk-cell-calling/
2022-08-12T02:23:13,375 Given no hashes to check 1 links for project 'bmk-cell-calling': discarding no candidates
2022-08-12T02:23:13,416 Collecting bmk-cell-calling==0.2.1
2022-08-12T02:23:13,421   Created temporary directory: /tmp/pip-unpack-hodcsn6h
2022-08-12T02:23:13,845   Downloading bmk-cell-calling-0.2.1.tar.gz (217 kB)
2022-08-12T02:23:14,276   Added bmk-cell-calling==0.2.1 from https://files.pythonhosted.org/packages/d6/97/9a8db904494e740083d8c2f68f0a6739649d8724e220584c1a6c5c974b96/bmk-cell-calling-0.2.1.tar.gz#sha256=93114e20f7e1d870cacd785545ef628ffe1cc3dc923399ddcad3090ec7284da6 to build tracker '/tmp/pip-build-tracker-ax3in1bt'
2022-08-12T02:23:14,279   Running setup.py (path:/tmp/pip-wheel-di6a04yl/bmk-cell-calling_22b45d49222b4090870b41344dd8617c/setup.py) egg_info for package bmk-cell-calling
2022-08-12T02:23:14,280   Created temporary directory: /tmp/pip-pip-egg-info-gjirroob
2022-08-12T02:23:14,281   Preparing metadata (setup.py): started
2022-08-12T02:23:14,283   Running command python setup.py egg_info
2022-08-12T02:23:24,811   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:531: UserWarning: Normalizing 'v0.2.1' to '0.2.1'
2022-08-12T02:23:24,813     warnings.warn(tmpl.format(**locals()))
2022-08-12T02:23:25,589   running egg_info
2022-08-12T02:23:25,596   creating /tmp/pip-pip-egg-info-gjirroob/bmk_cell_calling.egg-info
2022-08-12T02:23:26,277   writing /tmp/pip-pip-egg-info-gjirroob/bmk_cell_calling.egg-info/PKG-INFO
2022-08-12T02:23:26,845   writing dependency_links to /tmp/pip-pip-egg-info-gjirroob/bmk_cell_calling.egg-info/dependency_links.txt
2022-08-12T02:23:28,539   writing entry points to /tmp/pip-pip-egg-info-gjirroob/bmk_cell_calling.egg-info/entry_points.txt
2022-08-12T02:23:29,664   writing requirements to /tmp/pip-pip-egg-info-gjirroob/bmk_cell_calling.egg-info/requires.txt
2022-08-12T02:23:30,229   writing top-level names to /tmp/pip-pip-egg-info-gjirroob/bmk_cell_calling.egg-info/top_level.txt
2022-08-12T02:23:30,232   writing manifest file '/tmp/pip-pip-egg-info-gjirroob/bmk_cell_calling.egg-info/SOURCES.txt'
2022-08-12T02:23:31,829   reading manifest file '/tmp/pip-pip-egg-info-gjirroob/bmk_cell_calling.egg-info/SOURCES.txt'
2022-08-12T02:23:31,832   reading manifest template 'MANIFEST.in'
2022-08-12T02:23:31,853   writing manifest file '/tmp/pip-pip-egg-info-gjirroob/bmk_cell_calling.egg-info/SOURCES.txt'
2022-08-12T02:23:32,195   Preparing metadata (setup.py): finished with status 'done'
2022-08-12T02:23:32,205   Source in /tmp/pip-wheel-di6a04yl/bmk-cell-calling_22b45d49222b4090870b41344dd8617c has version 0.2.1, which satisfies requirement bmk-cell-calling==0.2.1 from https://files.pythonhosted.org/packages/d6/97/9a8db904494e740083d8c2f68f0a6739649d8724e220584c1a6c5c974b96/bmk-cell-calling-0.2.1.tar.gz#sha256=93114e20f7e1d870cacd785545ef628ffe1cc3dc923399ddcad3090ec7284da6
2022-08-12T02:23:32,207   Removed bmk-cell-calling==0.2.1 from https://files.pythonhosted.org/packages/d6/97/9a8db904494e740083d8c2f68f0a6739649d8724e220584c1a6c5c974b96/bmk-cell-calling-0.2.1.tar.gz#sha256=93114e20f7e1d870cacd785545ef628ffe1cc3dc923399ddcad3090ec7284da6 from build tracker '/tmp/pip-build-tracker-ax3in1bt'
2022-08-12T02:23:32,221 Created temporary directory: /tmp/pip-unpack-r83lkg_s
2022-08-12T02:23:32,222 Building wheels for collected packages: bmk-cell-calling
2022-08-12T02:23:32,232   Created temporary directory: /tmp/pip-wheel-010y97_v
2022-08-12T02:23:32,233   Building wheel for bmk-cell-calling (setup.py): started
2022-08-12T02:23:32,235   Destination directory: /tmp/pip-wheel-010y97_v
2022-08-12T02:23:32,235   Running command python setup.py bdist_wheel
2022-08-12T02:23:42,008   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:531: UserWarning: Normalizing 'v0.2.1' to '0.2.1'
2022-08-12T02:23:42,010     warnings.warn(tmpl.format(**locals()))
2022-08-12T02:23:42,270   running bdist_wheel
2022-08-12T02:23:43,288   running build
2022-08-12T02:23:43,289   running build_py
2022-08-12T02:23:43,968   creating build
2022-08-12T02:23:43,969   creating build/lib.linux-armv7l-cpython-39
2022-08-12T02:23:43,970   creating build/lib.linux-armv7l-cpython-39/bmkcc
2022-08-12T02:23:43,973   copying bmkcc/__main__.py -> build/lib.linux-armv7l-cpython-39/bmkcc
2022-08-12T02:23:43,976   copying bmkcc/cells.py -> build/lib.linux-armv7l-cpython-39/bmkcc
2022-08-12T02:23:43,980   copying bmkcc/__init__.py -> build/lib.linux-armv7l-cpython-39/bmkcc
2022-08-12T02:23:43,982   running egg_info
2022-08-12T02:23:45,358   writing bmk_cell_calling.egg-info/PKG-INFO
2022-08-12T02:23:45,921   writing dependency_links to bmk_cell_calling.egg-info/dependency_links.txt
2022-08-12T02:23:47,603   writing entry points to bmk_cell_calling.egg-info/entry_points.txt
2022-08-12T02:23:48,727   writing requirements to bmk_cell_calling.egg-info/requires.txt
2022-08-12T02:23:49,288   writing top-level names to bmk_cell_calling.egg-info/top_level.txt
2022-08-12T02:23:49,411   reading manifest file 'bmk_cell_calling.egg-info/SOURCES.txt'
2022-08-12T02:23:49,429   reading manifest template 'MANIFEST.in'
2022-08-12T02:23:49,448   writing manifest file 'bmk_cell_calling.egg-info/SOURCES.txt'
2022-08-12T02:23:49,453   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-08-12T02:23:49,454       ############################
2022-08-12T02:23:49,455       # Package would be ignored #
2022-08-12T02:23:49,455       ############################
2022-08-12T02:23:49,455       Python recognizes 'bmkcc.cellranger' as an importable package, however it is
2022-08-12T02:23:49,456       included in the distribution as "data".
2022-08-12T02:23:49,456       This behavior is likely to change in future versions of setuptools (and
2022-08-12T02:23:49,456       therefore is considered deprecated).

2022-08-12T02:23:49,457       Please make sure that 'bmkcc.cellranger' is included as a package by using
2022-08-12T02:23:49,457       setuptools' `packages` configuration field or the proper discovery methods.

2022-08-12T02:23:49,458       You can read more about "package discovery" and "data files" on setuptools
2022-08-12T02:23:49,458       documentation page.


2022-08-12T02:23:49,459   !!

2022-08-12T02:23:49,460     check.warn(importable)
2022-08-12T02:23:49,460   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-08-12T02:23:49,461       ############################
2022-08-12T02:23:49,461       # Package would be ignored #
2022-08-12T02:23:49,462       ############################
2022-08-12T02:23:49,462       Python recognizes 'bmkcc.cellranger.analysis' as an importable package, however it is
2022-08-12T02:23:49,462       included in the distribution as "data".
2022-08-12T02:23:49,462       This behavior is likely to change in future versions of setuptools (and
2022-08-12T02:23:49,463       therefore is considered deprecated).

2022-08-12T02:23:49,463       Please make sure that 'bmkcc.cellranger.analysis' is included as a package by using
2022-08-12T02:23:49,464       setuptools' `packages` configuration field or the proper discovery methods.

2022-08-12T02:23:49,464       You can read more about "package discovery" and "data files" on setuptools
2022-08-12T02:23:49,464       documentation page.


2022-08-12T02:23:49,465   !!

2022-08-12T02:23:49,466     check.warn(importable)
2022-08-12T02:23:49,466   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-08-12T02:23:49,467       ############################
2022-08-12T02:23:49,467       # Package would be ignored #
2022-08-12T02:23:49,468       ############################
2022-08-12T02:23:49,468       Python recognizes 'bmkcc.cellranger.rna' as an importable package, however it is
2022-08-12T02:23:49,468       included in the distribution as "data".
2022-08-12T02:23:49,469       This behavior is likely to change in future versions of setuptools (and
2022-08-12T02:23:49,469       therefore is considered deprecated).

2022-08-12T02:23:49,469       Please make sure that 'bmkcc.cellranger.rna' is included as a package by using
2022-08-12T02:23:49,470       setuptools' `packages` configuration field or the proper discovery methods.

2022-08-12T02:23:49,470       You can read more about "package discovery" and "data files" on setuptools
2022-08-12T02:23:49,471       documentation page.


2022-08-12T02:23:49,471   !!

2022-08-12T02:23:49,472     check.warn(importable)
2022-08-12T02:23:49,472   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-08-12T02:23:49,473       ############################
2022-08-12T02:23:49,474       # Package would be ignored #
2022-08-12T02:23:49,474       ############################
2022-08-12T02:23:49,474       Python recognizes 'bmkcc.cellranger.webshim' as an importable package, however it is
2022-08-12T02:23:49,474       included in the distribution as "data".
2022-08-12T02:23:49,475       This behavior is likely to change in future versions of setuptools (and
2022-08-12T02:23:49,475       therefore is considered deprecated).

2022-08-12T02:23:49,476       Please make sure that 'bmkcc.cellranger.webshim' is included as a package by using
2022-08-12T02:23:49,476       setuptools' `packages` configuration field or the proper discovery methods.

2022-08-12T02:23:49,477       You can read more about "package discovery" and "data files" on setuptools
2022-08-12T02:23:49,477       documentation page.


2022-08-12T02:23:49,478   !!

2022-08-12T02:23:49,479     check.warn(importable)
2022-08-12T02:23:49,479   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-08-12T02:23:49,480       ############################
2022-08-12T02:23:49,480       # Package would be ignored #
2022-08-12T02:23:49,480       ############################
2022-08-12T02:23:49,481       Python recognizes 'bmkcc.cellranger.webshim.constants' as an importable package, however it is
2022-08-12T02:23:49,481       included in the distribution as "data".
2022-08-12T02:23:49,481       This behavior is likely to change in future versions of setuptools (and
2022-08-12T02:23:49,482       therefore is considered deprecated).

2022-08-12T02:23:49,482       Please make sure that 'bmkcc.cellranger.webshim.constants' is included as a package by using
2022-08-12T02:23:49,482       setuptools' `packages` configuration field or the proper discovery methods.

2022-08-12T02:23:49,483       You can read more about "package discovery" and "data files" on setuptools
2022-08-12T02:23:49,483       documentation page.


2022-08-12T02:23:49,484   !!

2022-08-12T02:23:49,485     check.warn(importable)
2022-08-12T02:23:49,485   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-08-12T02:23:49,486       ############################
2022-08-12T02:23:49,486       # Package would be ignored #
2022-08-12T02:23:49,486       ############################
2022-08-12T02:23:49,487       Python recognizes 'bmkcc.tenkit' as an importable package, however it is
2022-08-12T02:23:49,487       included in the distribution as "data".
2022-08-12T02:23:49,487       This behavior is likely to change in future versions of setuptools (and
2022-08-12T02:23:49,488       therefore is considered deprecated).

2022-08-12T02:23:49,489       Please make sure that 'bmkcc.tenkit' is included as a package by using
2022-08-12T02:23:49,489       setuptools' `packages` configuration field or the proper discovery methods.

2022-08-12T02:23:49,489       You can read more about "package discovery" and "data files" on setuptools
2022-08-12T02:23:49,490       documentation page.


2022-08-12T02:23:49,491   !!

2022-08-12T02:23:49,491     check.warn(importable)
2022-08-12T02:23:49,492   creating build/lib.linux-armv7l-cpython-39/bmkcc/cellranger
2022-08-12T02:23:49,492   copying bmkcc/cellranger/__init__.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger
2022-08-12T02:23:49,492   copying bmkcc/cellranger/bisect.c -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger
2022-08-12T02:23:49,530   copying bmkcc/cellranger/bisect.pyx -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger
2022-08-12T02:23:49,534   copying bmkcc/cellranger/cell_calling.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger
2022-08-12T02:23:49,539   copying bmkcc/cellranger/cell_calling_helpers.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger
2022-08-12T02:23:49,546   copying bmkcc/cellranger/constants.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger
2022-08-12T02:23:49,551   copying bmkcc/cellranger/feature_ref.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger
2022-08-12T02:23:49,558   copying bmkcc/cellranger/h5_constants.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger
2022-08-12T02:23:49,562   copying bmkcc/cellranger/hdf5.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger
2022-08-12T02:23:49,567   copying bmkcc/cellranger/io.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger
2022-08-12T02:23:49,573   copying bmkcc/cellranger/log_subprocess.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger
2022-08-12T02:23:49,579   copying bmkcc/cellranger/matrix.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger
2022-08-12T02:23:49,587   copying bmkcc/cellranger/sgt.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger
2022-08-12T02:23:49,591   copying bmkcc/cellranger/sparse.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger
2022-08-12T02:23:49,596   copying bmkcc/cellranger/stats.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger
2022-08-12T02:23:49,602   copying bmkcc/cellranger/utils.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger
2022-08-12T02:23:49,608   copying bmkcc/cellranger/wrapped_tables.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger
2022-08-12T02:23:49,613   creating build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis
2022-08-12T02:23:49,615   copying bmkcc/cellranger/analysis/__init__.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis
2022-08-12T02:23:49,620   copying bmkcc/cellranger/analysis/bhtsne.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis
2022-08-12T02:23:49,624   copying bmkcc/cellranger/analysis/clustering.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis
2022-08-12T02:23:49,629   copying bmkcc/cellranger/analysis/constants.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis
2022-08-12T02:23:49,634   copying bmkcc/cellranger/analysis/diffexp.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis
2022-08-12T02:23:49,641   copying bmkcc/cellranger/analysis/io.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis
2022-08-12T02:23:49,646   copying bmkcc/cellranger/analysis/singlegenome.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis
2022-08-12T02:23:49,651   copying bmkcc/cellranger/analysis/stats.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis
2022-08-12T02:23:49,656   creating build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/rna
2022-08-12T02:23:49,658   copying bmkcc/cellranger/rna/__init__.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/rna
2022-08-12T02:23:49,662   copying bmkcc/cellranger/rna/library.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/rna
2022-08-12T02:23:49,667   creating build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim
2022-08-12T02:23:49,669   copying bmkcc/cellranger/webshim/__init__.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim
2022-08-12T02:23:49,673   copying bmkcc/cellranger/webshim/common.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim
2022-08-12T02:23:49,681   copying bmkcc/cellranger/webshim/data.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim
2022-08-12T02:23:49,687   creating build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants
2022-08-12T02:23:49,689   copying bmkcc/cellranger/webshim/constants/__init__.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants
2022-08-12T02:23:49,693   copying bmkcc/cellranger/webshim/constants/gex.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants
2022-08-12T02:23:49,703   copying bmkcc/cellranger/webshim/constants/shared.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants
2022-08-12T02:23:49,708   copying bmkcc/cellranger/webshim/constants/targetedcompare.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants
2022-08-12T02:23:49,714   copying bmkcc/cellranger/webshim/constants/vdj.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants
2022-08-12T02:23:49,720   creating build/lib.linux-armv7l-cpython-39/bmkcc/tenkit
2022-08-12T02:23:49,722   copying bmkcc/tenkit/__init__.py -> build/lib.linux-armv7l-cpython-39/bmkcc/tenkit
2022-08-12T02:23:49,726   copying bmkcc/tenkit/constants.py -> build/lib.linux-armv7l-cpython-39/bmkcc/tenkit
2022-08-12T02:23:49,730   copying bmkcc/tenkit/log_subprocess.py -> build/lib.linux-armv7l-cpython-39/bmkcc/tenkit
2022-08-12T02:23:49,736   copying bmkcc/tenkit/safe_json.py -> build/lib.linux-armv7l-cpython-39/bmkcc/tenkit
2022-08-12T02:23:49,741   copying bmkcc/tenkit/seq.py -> build/lib.linux-armv7l-cpython-39/bmkcc/tenkit
2022-08-12T02:23:49,745   copying bmkcc/tenkit/stats.py -> build/lib.linux-armv7l-cpython-39/bmkcc/tenkit
2022-08-12T02:23:49,751   running build_ext
2022-08-12T02:23:49,764   building 'bmkcc.cellranger.bisect' extension
2022-08-12T02:23:49,766   creating build/temp.linux-armv7l-cpython-39
2022-08-12T02:23:49,767   creating build/temp.linux-armv7l-cpython-39/bmkcc
2022-08-12T02:23:49,768   creating build/temp.linux-armv7l-cpython-39/bmkcc/cellranger
2022-08-12T02:23:49,771   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c bmkcc/cellranger/bisect.c -o build/temp.linux-armv7l-cpython-39/bmkcc/cellranger/bisect.o
2022-08-12T02:23:50,595   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2022-08-12T02:23:50,595                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-08-12T02:23:50,595                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-08-12T02:23:50,596                    from bmkcc/cellranger/bisect.c:759:
2022-08-12T02:23:50,596   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-08-12T02:23:50,596      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-08-12T02:23:50,597         |  ^~~~~~~
2022-08-12T02:24:18,068   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/bmkcc/cellranger/bisect.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/bisect.cpython-39-arm-linux-gnueabihf.so
2022-08-12T02:24:19,118   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-08-12T02:24:19,119     warnings.warn(
2022-08-12T02:24:19,799   installing to build/bdist.linux-armv7l/wheel
2022-08-12T02:24:19,800   running install
2022-08-12T02:24:19,862   running install_lib
2022-08-12T02:24:20,539   creating build/bdist.linux-armv7l
2022-08-12T02:24:20,541   creating build/bdist.linux-armv7l/wheel
2022-08-12T02:24:20,544   creating build/bdist.linux-armv7l/wheel/bmkcc
2022-08-12T02:24:20,548   creating build/bdist.linux-armv7l/wheel/bmkcc/tenkit
2022-08-12T02:24:20,550   copying build/lib.linux-armv7l-cpython-39/bmkcc/tenkit/log_subprocess.py -> build/bdist.linux-armv7l/wheel/bmkcc/tenkit
2022-08-12T02:24:20,556   copying build/lib.linux-armv7l-cpython-39/bmkcc/tenkit/constants.py -> build/bdist.linux-armv7l/wheel/bmkcc/tenkit
2022-08-12T02:24:20,560   copying build/lib.linux-armv7l-cpython-39/bmkcc/tenkit/safe_json.py -> build/bdist.linux-armv7l/wheel/bmkcc/tenkit
2022-08-12T02:24:20,565   copying build/lib.linux-armv7l-cpython-39/bmkcc/tenkit/__init__.py -> build/bdist.linux-armv7l/wheel/bmkcc/tenkit
2022-08-12T02:24:20,568   copying build/lib.linux-armv7l-cpython-39/bmkcc/tenkit/stats.py -> build/bdist.linux-armv7l/wheel/bmkcc/tenkit
2022-08-12T02:24:20,572   copying build/lib.linux-armv7l-cpython-39/bmkcc/tenkit/seq.py -> build/bdist.linux-armv7l/wheel/bmkcc/tenkit
2022-08-12T02:24:20,576   copying build/lib.linux-armv7l-cpython-39/bmkcc/__main__.py -> build/bdist.linux-armv7l/wheel/bmkcc
2022-08-12T02:24:20,580   copying build/lib.linux-armv7l-cpython-39/bmkcc/cells.py -> build/bdist.linux-armv7l/wheel/bmkcc
2022-08-12T02:24:20,586   creating build/bdist.linux-armv7l/wheel/bmkcc/cellranger
2022-08-12T02:24:20,589   creating build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim
2022-08-12T02:24:20,593   creating build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim/constants
2022-08-12T02:24:20,595   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants/targetedcompare.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim/constants
2022-08-12T02:24:20,601   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants/vdj.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim/constants
2022-08-12T02:24:20,607   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants/gex.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim/constants
2022-08-12T02:24:20,616   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants/__init__.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim/constants
2022-08-12T02:24:20,620   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants/shared.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim/constants
2022-08-12T02:24:20,625   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/data.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim
2022-08-12T02:24:20,630   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/__init__.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim
2022-08-12T02:24:20,634   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/common.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim
2022-08-12T02:24:20,644   creating build/bdist.linux-armv7l/wheel/bmkcc/cellranger/analysis
2022-08-12T02:24:20,646   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis/singlegenome.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/analysis
2022-08-12T02:24:20,653   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis/clustering.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/analysis
2022-08-12T02:24:20,657   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis/diffexp.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/analysis
2022-08-12T02:24:20,663   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis/constants.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/analysis
2022-08-12T02:24:20,667   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis/io.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/analysis
2022-08-12T02:24:20,672   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/analysis
2022-08-12T02:24:20,676   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis/stats.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/analysis
2022-08-12T02:24:20,680   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis/bhtsne.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/analysis
2022-08-12T02:24:20,684   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/cell_calling_helpers.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger
2022-08-12T02:24:20,691   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/h5_constants.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger
2022-08-12T02:24:20,695   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/sparse.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger
2022-08-12T02:24:20,699   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/matrix.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger
2022-08-12T02:24:20,708   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/bisect.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger
2022-08-12T02:24:20,752   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/feature_ref.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger
2022-08-12T02:24:20,758   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/bisect.pyx -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger
2022-08-12T02:24:20,762   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/log_subprocess.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger
2022-08-12T02:24:20,767   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/bisect.c -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger
2022-08-12T02:24:20,837   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/constants.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger
2022-08-12T02:24:20,842   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/io.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger
2022-08-12T02:24:20,847   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/__init__.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger
2022-08-12T02:24:20,850   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/hdf5.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger
2022-08-12T02:24:20,857   creating build/bdist.linux-armv7l/wheel/bmkcc/cellranger/rna
2022-08-12T02:24:20,859   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/rna/__init__.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/rna
2022-08-12T02:24:20,863   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/rna/library.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/rna
2022-08-12T02:24:20,867   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/wrapped_tables.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger
2022-08-12T02:24:20,871   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/stats.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger
2022-08-12T02:24:20,877   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/cell_calling.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger
2022-08-12T02:24:20,882   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/sgt.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger
2022-08-12T02:24:20,886   copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/utils.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger
2022-08-12T02:24:20,893   copying build/lib.linux-armv7l-cpython-39/bmkcc/__init__.py -> build/bdist.linux-armv7l/wheel/bmkcc
2022-08-12T02:24:20,896   running install_egg_info
2022-08-12T02:24:21,586   Copying bmk_cell_calling.egg-info to build/bdist.linux-armv7l/wheel/bmk_cell_calling-0.2.1-py3.9.egg-info
2022-08-12T02:24:21,612   running install_scripts
2022-08-12T02:24:21,725   creating build/bdist.linux-armv7l/wheel/bmk_cell_calling-0.2.1.dist-info/WHEEL
2022-08-12T02:24:21,731   creating '/tmp/pip-wheel-010y97_v/bmk_cell_calling-0.2.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-08-12T02:24:21,738   adding 'bmkcc/__init__.py'
2022-08-12T02:24:21,741   adding 'bmkcc/__main__.py'
2022-08-12T02:24:21,745   adding 'bmkcc/cells.py'
2022-08-12T02:24:21,749   adding 'bmkcc/cellranger/__init__.py'
2022-08-12T02:24:21,917   adding 'bmkcc/cellranger/bisect.c'
2022-08-12T02:24:22,352   adding 'bmkcc/cellranger/bisect.cpython-39-arm-linux-gnueabihf.so'
2022-08-12T02:24:22,371   adding 'bmkcc/cellranger/bisect.pyx'
2022-08-12T02:24:22,376   adding 'bmkcc/cellranger/cell_calling.py'
2022-08-12T02:24:22,383   adding 'bmkcc/cellranger/cell_calling_helpers.py'
2022-08-12T02:24:22,388   adding 'bmkcc/cellranger/constants.py'
2022-08-12T02:24:22,395   adding 'bmkcc/cellranger/feature_ref.py'
2022-08-12T02:24:22,398   adding 'bmkcc/cellranger/h5_constants.py'
2022-08-12T02:24:22,402   adding 'bmkcc/cellranger/hdf5.py'
2022-08-12T02:24:22,406   adding 'bmkcc/cellranger/io.py'
2022-08-12T02:24:22,410   adding 'bmkcc/cellranger/log_subprocess.py'
2022-08-12T02:24:22,425   adding 'bmkcc/cellranger/matrix.py'
2022-08-12T02:24:22,430   adding 'bmkcc/cellranger/sgt.py'
2022-08-12T02:24:22,433   adding 'bmkcc/cellranger/sparse.py'
2022-08-12T02:24:22,439   adding 'bmkcc/cellranger/stats.py'
2022-08-12T02:24:22,449   adding 'bmkcc/cellranger/utils.py'
2022-08-12T02:24:22,453   adding 'bmkcc/cellranger/wrapped_tables.py'
2022-08-12T02:24:22,457   adding 'bmkcc/cellranger/analysis/__init__.py'
2022-08-12T02:24:22,460   adding 'bmkcc/cellranger/analysis/bhtsne.py'
2022-08-12T02:24:22,464   adding 'bmkcc/cellranger/analysis/clustering.py'
2022-08-12T02:24:22,467   adding 'bmkcc/cellranger/analysis/constants.py'
2022-08-12T02:24:22,474   adding 'bmkcc/cellranger/analysis/diffexp.py'
2022-08-12T02:24:22,478   adding 'bmkcc/cellranger/analysis/io.py'
2022-08-12T02:24:22,482   adding 'bmkcc/cellranger/analysis/singlegenome.py'
2022-08-12T02:24:22,486   adding 'bmkcc/cellranger/analysis/stats.py'
2022-08-12T02:24:22,490   adding 'bmkcc/cellranger/rna/__init__.py'
2022-08-12T02:24:22,493   adding 'bmkcc/cellranger/rna/library.py'
2022-08-12T02:24:22,497   adding 'bmkcc/cellranger/webshim/__init__.py'
2022-08-12T02:24:22,512   adding 'bmkcc/cellranger/webshim/common.py'
2022-08-12T02:24:22,518   adding 'bmkcc/cellranger/webshim/data.py'
2022-08-12T02:24:22,522   adding 'bmkcc/cellranger/webshim/constants/__init__.py'
2022-08-12T02:24:22,536   adding 'bmkcc/cellranger/webshim/constants/gex.py'
2022-08-12T02:24:22,541   adding 'bmkcc/cellranger/webshim/constants/shared.py'
2022-08-12T02:24:22,545   adding 'bmkcc/cellranger/webshim/constants/targetedcompare.py'
2022-08-12T02:24:22,551   adding 'bmkcc/cellranger/webshim/constants/vdj.py'
2022-08-12T02:24:22,555   adding 'bmkcc/tenkit/__init__.py'
2022-08-12T02:24:22,558   adding 'bmkcc/tenkit/constants.py'
2022-08-12T02:24:22,563   adding 'bmkcc/tenkit/log_subprocess.py'
2022-08-12T02:24:22,566   adding 'bmkcc/tenkit/safe_json.py'
2022-08-12T02:24:22,570   adding 'bmkcc/tenkit/seq.py'
2022-08-12T02:24:22,573   adding 'bmkcc/tenkit/stats.py'
2022-08-12T02:24:22,575   adding 'bmk_cell_calling-0.2.1.dist-info/METADATA'
2022-08-12T02:24:22,578   adding 'bmk_cell_calling-0.2.1.dist-info/WHEEL'
2022-08-12T02:24:22,580   adding 'bmk_cell_calling-0.2.1.dist-info/entry_points.txt'
2022-08-12T02:24:22,582   adding 'bmk_cell_calling-0.2.1.dist-info/top_level.txt'
2022-08-12T02:24:22,585   adding 'bmk_cell_calling-0.2.1.dist-info/RECORD'
2022-08-12T02:24:22,611   removing build/bdist.linux-armv7l/wheel
2022-08-12T02:24:23,046   Building wheel for bmk-cell-calling (setup.py): finished with status 'done'
2022-08-12T02:24:23,073   Created wheel for bmk-cell-calling: filename=bmk_cell_calling-0.2.1-cp39-cp39-linux_armv7l.whl size=536178 sha256=37c8e615645a689c4f060a977d73ec1e23dd1f88fc02e08085b4c2fb62ad506b
2022-08-12T02:24:23,075   Stored in directory: /tmp/pip-ephem-wheel-cache-8op5hzqf/wheels/26/bc/51/d381cddd0aa884225e803f5364f007fe951ff7adb39dcd1c89
2022-08-12T02:24:23,101 Successfully built bmk-cell-calling
2022-08-12T02:24:23,150 Removed build tracker: '/tmp/pip-build-tracker-ax3in1bt'