2022-08-12T02:36:12,575 Created temporary directory: /tmp/pip-ephem-wheel-cache-b4hl6yqx 2022-08-12T02:36:12,581 Created temporary directory: /tmp/pip-build-tracker-r7l55voy 2022-08-12T02:36:12,581 Initialized build tracking at /tmp/pip-build-tracker-r7l55voy 2022-08-12T02:36:12,582 Created build tracker: /tmp/pip-build-tracker-r7l55voy 2022-08-12T02:36:12,582 Entered build tracker: /tmp/pip-build-tracker-r7l55voy 2022-08-12T02:36:12,583 Created temporary directory: /tmp/pip-wheel-sl62mifs 2022-08-12T02:36:12,658 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-12T02:36:12,667 2 location(s) to search for versions of bmk-cell-calling: 2022-08-12T02:36:12,667 * https://pypi.org/simple/bmk-cell-calling/ 2022-08-12T02:36:12,667 * https://www.piwheels.org/simple/bmk-cell-calling/ 2022-08-12T02:36:12,668 Fetching project page and analyzing links: https://pypi.org/simple/bmk-cell-calling/ 2022-08-12T02:36:12,669 Getting page https://pypi.org/simple/bmk-cell-calling/ 2022-08-12T02:36:12,672 Found index url https://pypi.org/simple 2022-08-12T02:36:12,792 Link requires a different Python (3.9.2 not in: '>=3.8, <=3.9'): https://files.pythonhosted.org/packages/32/e1/9fe0bb179cca0ab26bc1645f0a00a1462d120b1b704e9b1c1657648e27a1/bmk-cell-calling-0.2.0.tar.gz#sha256=29a77e583b28e393c81f1f493e9a493596021d2710433d6ef0eb0e939d4aaa29 (from https://pypi.org/simple/bmk-cell-calling/) (requires-python:>=3.8, <=3.9) 2022-08-12T02:36:12,793 Skipping link: 0.2.0 Requires-Python >=3.8, <=3.9: https://files.pythonhosted.org/packages/32/e1/9fe0bb179cca0ab26bc1645f0a00a1462d120b1b704e9b1c1657648e27a1/bmk-cell-calling-0.2.0.tar.gz#sha256=29a77e583b28e393c81f1f493e9a493596021d2710433d6ef0eb0e939d4aaa29 (from https://pypi.org/simple/bmk-cell-calling/) (requires-python:>=3.8, <=3.9) 2022-08-12T02:36:12,795 Found link https://files.pythonhosted.org/packages/d6/97/9a8db904494e740083d8c2f68f0a6739649d8724e220584c1a6c5c974b96/bmk-cell-calling-0.2.1.tar.gz#sha256=93114e20f7e1d870cacd785545ef628ffe1cc3dc923399ddcad3090ec7284da6 (from https://pypi.org/simple/bmk-cell-calling/) (requires-python:>=3.8, <3.10), version: 0.2.1 2022-08-12T02:36:12,796 Found link https://files.pythonhosted.org/packages/f5/46/3ea3833df96b66ba0c74f4e7f96a4cc9e4ff040ef34429199453c6d30d76/bmk-cell-calling-0.2.2.tar.gz#sha256=a56ee10478b58797dc8b4f27a5d086967830122894f029c7db39ab207f63ca5b (from https://pypi.org/simple/bmk-cell-calling/) (requires-python:>=3.8, <3.10), version: 0.2.2 2022-08-12T02:36:12,798 Fetching project page and analyzing links: https://www.piwheels.org/simple/bmk-cell-calling/ 2022-08-12T02:36:12,798 Getting page https://www.piwheels.org/simple/bmk-cell-calling/ 2022-08-12T02:36:12,800 Found index url https://www.piwheels.org/simple 2022-08-12T02:36:13,009 Skipping link: No binaries permitted for bmk-cell-calling: https://www.piwheels.org/simple/bmk-cell-calling/bmk_cell_calling-0.2.1-cp39-cp39-linux_armv7l.whl#sha256=37c8e615645a689c4f060a977d73ec1e23dd1f88fc02e08085b4c2fb62ad506b (from https://www.piwheels.org/simple/bmk-cell-calling/) (requires-python:>=3.8, <3.10) 2022-08-12T02:36:13,009 Skipping link: No binaries permitted for bmk-cell-calling: https://www.piwheels.org/simple/bmk-cell-calling/bmk_cell_calling-0.2.1-cp39-cp39-linux_armv6l.whl#sha256=37c8e615645a689c4f060a977d73ec1e23dd1f88fc02e08085b4c2fb62ad506b (from https://www.piwheels.org/simple/bmk-cell-calling/) (requires-python:>=3.8, <3.10) 2022-08-12T02:36:13,010 Skipping link: not a file: https://www.piwheels.org/simple/bmk-cell-calling/ 2022-08-12T02:36:13,011 Skipping link: not a file: https://pypi.org/simple/bmk-cell-calling/ 2022-08-12T02:36:13,055 Given no hashes to check 1 links for project 'bmk-cell-calling': discarding no candidates 2022-08-12T02:36:13,097 Collecting bmk-cell-calling==0.2.2 2022-08-12T02:36:13,101 Created temporary directory: /tmp/pip-unpack-ju6t6rew 2022-08-12T02:36:13,913 Downloading bmk-cell-calling-0.2.2.tar.gz (217 kB) 2022-08-12T02:36:14,359 Added bmk-cell-calling==0.2.2 from https://files.pythonhosted.org/packages/f5/46/3ea3833df96b66ba0c74f4e7f96a4cc9e4ff040ef34429199453c6d30d76/bmk-cell-calling-0.2.2.tar.gz#sha256=a56ee10478b58797dc8b4f27a5d086967830122894f029c7db39ab207f63ca5b to build tracker '/tmp/pip-build-tracker-r7l55voy' 2022-08-12T02:36:14,363 Running setup.py (path:/tmp/pip-wheel-sl62mifs/bmk-cell-calling_fad257d534cd4c67be6e3bf4d23d1f26/setup.py) egg_info for package bmk-cell-calling 2022-08-12T02:36:14,364 Created temporary directory: /tmp/pip-pip-egg-info-3z11zie7 2022-08-12T02:36:14,365 Preparing metadata (setup.py): started 2022-08-12T02:36:14,367 Running command python setup.py egg_info 2022-08-12T02:36:23,873 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:531: UserWarning: Normalizing 'v0.2.2' to '0.2.2' 2022-08-12T02:36:23,875 warnings.warn(tmpl.format(**locals())) 2022-08-12T02:36:24,628 running egg_info 2022-08-12T02:36:24,635 creating /tmp/pip-pip-egg-info-3z11zie7/bmk_cell_calling.egg-info 2022-08-12T02:36:25,292 writing /tmp/pip-pip-egg-info-3z11zie7/bmk_cell_calling.egg-info/PKG-INFO 2022-08-12T02:36:25,862 writing dependency_links to /tmp/pip-pip-egg-info-3z11zie7/bmk_cell_calling.egg-info/dependency_links.txt 2022-08-12T02:36:27,541 writing entry points to /tmp/pip-pip-egg-info-3z11zie7/bmk_cell_calling.egg-info/entry_points.txt 2022-08-12T02:36:28,664 writing requirements to /tmp/pip-pip-egg-info-3z11zie7/bmk_cell_calling.egg-info/requires.txt 2022-08-12T02:36:29,234 writing top-level names to /tmp/pip-pip-egg-info-3z11zie7/bmk_cell_calling.egg-info/top_level.txt 2022-08-12T02:36:29,237 writing manifest file '/tmp/pip-pip-egg-info-3z11zie7/bmk_cell_calling.egg-info/SOURCES.txt' 2022-08-12T02:36:30,750 reading manifest file '/tmp/pip-pip-egg-info-3z11zie7/bmk_cell_calling.egg-info/SOURCES.txt' 2022-08-12T02:36:30,753 reading manifest template 'MANIFEST.in' 2022-08-12T02:36:30,774 writing manifest file '/tmp/pip-pip-egg-info-3z11zie7/bmk_cell_calling.egg-info/SOURCES.txt' 2022-08-12T02:36:31,107 Preparing metadata (setup.py): finished with status 'done' 2022-08-12T02:36:31,118 Source in /tmp/pip-wheel-sl62mifs/bmk-cell-calling_fad257d534cd4c67be6e3bf4d23d1f26 has version 0.2.2, which satisfies requirement bmk-cell-calling==0.2.2 from https://files.pythonhosted.org/packages/f5/46/3ea3833df96b66ba0c74f4e7f96a4cc9e4ff040ef34429199453c6d30d76/bmk-cell-calling-0.2.2.tar.gz#sha256=a56ee10478b58797dc8b4f27a5d086967830122894f029c7db39ab207f63ca5b 2022-08-12T02:36:31,120 Removed bmk-cell-calling==0.2.2 from https://files.pythonhosted.org/packages/f5/46/3ea3833df96b66ba0c74f4e7f96a4cc9e4ff040ef34429199453c6d30d76/bmk-cell-calling-0.2.2.tar.gz#sha256=a56ee10478b58797dc8b4f27a5d086967830122894f029c7db39ab207f63ca5b from build tracker '/tmp/pip-build-tracker-r7l55voy' 2022-08-12T02:36:31,135 Created temporary directory: /tmp/pip-unpack-qzgwq93d 2022-08-12T02:36:31,137 Building wheels for collected packages: bmk-cell-calling 2022-08-12T02:36:31,149 Created temporary directory: /tmp/pip-wheel-ygblrweo 2022-08-12T02:36:31,150 Building wheel for bmk-cell-calling (setup.py): started 2022-08-12T02:36:31,152 Destination directory: /tmp/pip-wheel-ygblrweo 2022-08-12T02:36:31,152 Running command python setup.py bdist_wheel 2022-08-12T02:36:40,496 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:531: UserWarning: Normalizing 'v0.2.2' to '0.2.2' 2022-08-12T02:36:40,497 warnings.warn(tmpl.format(**locals())) 2022-08-12T02:36:40,739 running bdist_wheel 2022-08-12T02:36:41,680 running build 2022-08-12T02:36:41,680 running build_py 2022-08-12T02:36:42,337 creating build 2022-08-12T02:36:42,338 creating build/lib.linux-armv7l-cpython-39 2022-08-12T02:36:42,339 creating build/lib.linux-armv7l-cpython-39/bmkcc 2022-08-12T02:36:42,341 copying bmkcc/__main__.py -> build/lib.linux-armv7l-cpython-39/bmkcc 2022-08-12T02:36:42,345 copying bmkcc/cells.py -> build/lib.linux-armv7l-cpython-39/bmkcc 2022-08-12T02:36:42,349 copying bmkcc/__init__.py -> build/lib.linux-armv7l-cpython-39/bmkcc 2022-08-12T02:36:42,350 running egg_info 2022-08-12T02:36:43,679 writing bmk_cell_calling.egg-info/PKG-INFO 2022-08-12T02:36:44,238 writing dependency_links to bmk_cell_calling.egg-info/dependency_links.txt 2022-08-12T02:36:45,915 writing entry points to bmk_cell_calling.egg-info/entry_points.txt 2022-08-12T02:36:47,032 writing requirements to bmk_cell_calling.egg-info/requires.txt 2022-08-12T02:36:47,591 writing top-level names to bmk_cell_calling.egg-info/top_level.txt 2022-08-12T02:36:47,692 reading manifest file 'bmk_cell_calling.egg-info/SOURCES.txt' 2022-08-12T02:36:47,709 reading manifest template 'MANIFEST.in' 2022-08-12T02:36:47,728 writing manifest file 'bmk_cell_calling.egg-info/SOURCES.txt' 2022-08-12T02:36:47,733 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-12T02:36:47,734 ############################ 2022-08-12T02:36:47,734 # Package would be ignored # 2022-08-12T02:36:47,735 ############################ 2022-08-12T02:36:47,735 Python recognizes 'bmkcc.cellranger' as an importable package, however it is 2022-08-12T02:36:47,735 included in the distribution as "data". 2022-08-12T02:36:47,736 This behavior is likely to change in future versions of setuptools (and 2022-08-12T02:36:47,736 therefore is considered deprecated). 2022-08-12T02:36:47,736 Please make sure that 'bmkcc.cellranger' is included as a package by using 2022-08-12T02:36:47,737 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-12T02:36:47,737 You can read more about "package discovery" and "data files" on setuptools 2022-08-12T02:36:47,738 documentation page. 2022-08-12T02:36:47,739 !! 2022-08-12T02:36:47,739 check.warn(importable) 2022-08-12T02:36:47,740 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-12T02:36:47,740 ############################ 2022-08-12T02:36:47,741 # Package would be ignored # 2022-08-12T02:36:47,741 ############################ 2022-08-12T02:36:47,741 Python recognizes 'bmkcc.cellranger.analysis' as an importable package, however it is 2022-08-12T02:36:47,742 included in the distribution as "data". 2022-08-12T02:36:47,742 This behavior is likely to change in future versions of setuptools (and 2022-08-12T02:36:47,742 therefore is considered deprecated). 2022-08-12T02:36:47,743 Please make sure that 'bmkcc.cellranger.analysis' is included as a package by using 2022-08-12T02:36:47,743 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-12T02:36:47,744 You can read more about "package discovery" and "data files" on setuptools 2022-08-12T02:36:47,744 documentation page. 2022-08-12T02:36:47,745 !! 2022-08-12T02:36:47,745 check.warn(importable) 2022-08-12T02:36:47,746 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-12T02:36:47,747 ############################ 2022-08-12T02:36:47,748 # Package would be ignored # 2022-08-12T02:36:47,748 ############################ 2022-08-12T02:36:47,748 Python recognizes 'bmkcc.cellranger.rna' as an importable package, however it is 2022-08-12T02:36:47,748 included in the distribution as "data". 2022-08-12T02:36:47,749 This behavior is likely to change in future versions of setuptools (and 2022-08-12T02:36:47,749 therefore is considered deprecated). 2022-08-12T02:36:47,750 Please make sure that 'bmkcc.cellranger.rna' is included as a package by using 2022-08-12T02:36:47,750 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-12T02:36:47,750 You can read more about "package discovery" and "data files" on setuptools 2022-08-12T02:36:47,751 documentation page. 2022-08-12T02:36:47,751 !! 2022-08-12T02:36:47,752 check.warn(importable) 2022-08-12T02:36:47,752 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-12T02:36:47,753 ############################ 2022-08-12T02:36:47,754 # Package would be ignored # 2022-08-12T02:36:47,754 ############################ 2022-08-12T02:36:47,754 Python recognizes 'bmkcc.cellranger.webshim' as an importable package, however it is 2022-08-12T02:36:47,755 included in the distribution as "data". 2022-08-12T02:36:47,755 This behavior is likely to change in future versions of setuptools (and 2022-08-12T02:36:47,755 therefore is considered deprecated). 2022-08-12T02:36:47,756 Please make sure that 'bmkcc.cellranger.webshim' is included as a package by using 2022-08-12T02:36:47,756 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-12T02:36:47,757 You can read more about "package discovery" and "data files" on setuptools 2022-08-12T02:36:47,757 documentation page. 2022-08-12T02:36:47,758 !! 2022-08-12T02:36:47,759 check.warn(importable) 2022-08-12T02:36:47,759 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-12T02:36:47,760 ############################ 2022-08-12T02:36:47,760 # Package would be ignored # 2022-08-12T02:36:47,760 ############################ 2022-08-12T02:36:47,761 Python recognizes 'bmkcc.cellranger.webshim.constants' as an importable package, however it is 2022-08-12T02:36:47,761 included in the distribution as "data". 2022-08-12T02:36:47,761 This behavior is likely to change in future versions of setuptools (and 2022-08-12T02:36:47,762 therefore is considered deprecated). 2022-08-12T02:36:47,762 Please make sure that 'bmkcc.cellranger.webshim.constants' is included as a package by using 2022-08-12T02:36:47,762 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-12T02:36:47,763 You can read more about "package discovery" and "data files" on setuptools 2022-08-12T02:36:47,763 documentation page. 2022-08-12T02:36:47,764 !! 2022-08-12T02:36:47,765 check.warn(importable) 2022-08-12T02:36:47,765 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-12T02:36:47,766 ############################ 2022-08-12T02:36:47,766 # Package would be ignored # 2022-08-12T02:36:47,766 ############################ 2022-08-12T02:36:47,767 Python recognizes 'bmkcc.tenkit' as an importable package, however it is 2022-08-12T02:36:47,767 included in the distribution as "data". 2022-08-12T02:36:47,767 This behavior is likely to change in future versions of setuptools (and 2022-08-12T02:36:47,768 therefore is considered deprecated). 2022-08-12T02:36:47,768 Please make sure that 'bmkcc.tenkit' is included as a package by using 2022-08-12T02:36:47,769 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-12T02:36:47,769 You can read more about "package discovery" and "data files" on setuptools 2022-08-12T02:36:47,769 documentation page. 2022-08-12T02:36:47,770 !! 2022-08-12T02:36:47,771 check.warn(importable) 2022-08-12T02:36:47,771 creating build/lib.linux-armv7l-cpython-39/bmkcc/cellranger 2022-08-12T02:36:47,772 copying bmkcc/cellranger/__init__.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger 2022-08-12T02:36:47,772 copying bmkcc/cellranger/bisect.c -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger 2022-08-12T02:36:47,806 copying bmkcc/cellranger/bisect.pyx -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger 2022-08-12T02:36:47,811 copying bmkcc/cellranger/cell_calling.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger 2022-08-12T02:36:47,816 copying bmkcc/cellranger/cell_calling_helpers.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger 2022-08-12T02:36:47,821 copying bmkcc/cellranger/constants.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger 2022-08-12T02:36:47,827 copying bmkcc/cellranger/feature_ref.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger 2022-08-12T02:36:47,832 copying bmkcc/cellranger/h5_constants.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger 2022-08-12T02:36:47,837 copying bmkcc/cellranger/hdf5.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger 2022-08-12T02:36:47,842 copying bmkcc/cellranger/io.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger 2022-08-12T02:36:47,847 copying bmkcc/cellranger/log_subprocess.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger 2022-08-12T02:36:47,852 copying bmkcc/cellranger/matrix.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger 2022-08-12T02:36:47,860 copying bmkcc/cellranger/sgt.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger 2022-08-12T02:36:47,864 copying bmkcc/cellranger/sparse.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger 2022-08-12T02:36:47,869 copying bmkcc/cellranger/stats.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger 2022-08-12T02:36:47,875 copying bmkcc/cellranger/utils.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger 2022-08-12T02:36:47,881 copying bmkcc/cellranger/wrapped_tables.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger 2022-08-12T02:36:47,886 creating build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis 2022-08-12T02:36:47,889 copying bmkcc/cellranger/analysis/__init__.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis 2022-08-12T02:36:47,893 copying bmkcc/cellranger/analysis/bhtsne.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis 2022-08-12T02:36:47,900 copying bmkcc/cellranger/analysis/clustering.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis 2022-08-12T02:36:47,905 copying bmkcc/cellranger/analysis/constants.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis 2022-08-12T02:36:47,910 copying bmkcc/cellranger/analysis/diffexp.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis 2022-08-12T02:36:47,916 copying bmkcc/cellranger/analysis/io.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis 2022-08-12T02:36:47,921 copying bmkcc/cellranger/analysis/singlegenome.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis 2022-08-12T02:36:47,927 copying bmkcc/cellranger/analysis/stats.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis 2022-08-12T02:36:47,932 creating build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/rna 2022-08-12T02:36:47,934 copying bmkcc/cellranger/rna/__init__.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/rna 2022-08-12T02:36:47,940 copying bmkcc/cellranger/rna/library.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/rna 2022-08-12T02:36:47,945 creating build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim 2022-08-12T02:36:47,947 copying bmkcc/cellranger/webshim/__init__.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim 2022-08-12T02:36:47,952 copying bmkcc/cellranger/webshim/common.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim 2022-08-12T02:36:47,960 copying bmkcc/cellranger/webshim/data.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim 2022-08-12T02:36:47,966 creating build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants 2022-08-12T02:36:47,968 copying bmkcc/cellranger/webshim/constants/__init__.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants 2022-08-12T02:36:47,972 copying bmkcc/cellranger/webshim/constants/gex.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants 2022-08-12T02:36:47,982 copying bmkcc/cellranger/webshim/constants/shared.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants 2022-08-12T02:36:47,987 copying bmkcc/cellranger/webshim/constants/targetedcompare.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants 2022-08-12T02:36:47,994 copying bmkcc/cellranger/webshim/constants/vdj.py -> build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants 2022-08-12T02:36:48,000 creating build/lib.linux-armv7l-cpython-39/bmkcc/tenkit 2022-08-12T02:36:48,002 copying bmkcc/tenkit/__init__.py -> build/lib.linux-armv7l-cpython-39/bmkcc/tenkit 2022-08-12T02:36:48,006 copying bmkcc/tenkit/constants.py -> build/lib.linux-armv7l-cpython-39/bmkcc/tenkit 2022-08-12T02:36:48,011 copying bmkcc/tenkit/log_subprocess.py -> build/lib.linux-armv7l-cpython-39/bmkcc/tenkit 2022-08-12T02:36:48,016 copying bmkcc/tenkit/safe_json.py -> build/lib.linux-armv7l-cpython-39/bmkcc/tenkit 2022-08-12T02:36:48,022 copying bmkcc/tenkit/seq.py -> build/lib.linux-armv7l-cpython-39/bmkcc/tenkit 2022-08-12T02:36:48,026 copying bmkcc/tenkit/stats.py -> build/lib.linux-armv7l-cpython-39/bmkcc/tenkit 2022-08-12T02:36:48,032 running build_ext 2022-08-12T02:36:48,045 building 'bmkcc.cellranger.bisect' extension 2022-08-12T02:36:48,047 creating build/temp.linux-armv7l-cpython-39 2022-08-12T02:36:48,048 creating build/temp.linux-armv7l-cpython-39/bmkcc 2022-08-12T02:36:48,050 creating build/temp.linux-armv7l-cpython-39/bmkcc/cellranger 2022-08-12T02:36:48,052 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c bmkcc/cellranger/bisect.c -o build/temp.linux-armv7l-cpython-39/bmkcc/cellranger/bisect.o 2022-08-12T02:36:48,847 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960, 2022-08-12T02:36:48,848 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2022-08-12T02:36:48,848 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2022-08-12T02:36:48,848 from bmkcc/cellranger/bisect.c:759: 2022-08-12T02:36:48,848 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2022-08-12T02:36:48,849 17 | #warning "Using deprecated NumPy API, disable it with " \ 2022-08-12T02:36:48,849 | ^~~~~~~ 2022-08-12T02:37:16,333 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/bmkcc/cellranger/bisect.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/bisect.cpython-39-arm-linux-gnueabihf.so 2022-08-12T02:37:17,363 /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-08-12T02:37:17,364 warnings.warn( 2022-08-12T02:37:18,035 installing to build/bdist.linux-armv7l/wheel 2022-08-12T02:37:18,036 running install 2022-08-12T02:37:18,097 running install_lib 2022-08-12T02:37:18,754 creating build/bdist.linux-armv7l 2022-08-12T02:37:18,755 creating build/bdist.linux-armv7l/wheel 2022-08-12T02:37:18,759 creating build/bdist.linux-armv7l/wheel/bmkcc 2022-08-12T02:37:18,763 creating build/bdist.linux-armv7l/wheel/bmkcc/cellranger 2022-08-12T02:37:18,765 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/bisect.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger 2022-08-12T02:37:18,813 creating build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim 2022-08-12T02:37:18,815 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/common.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim 2022-08-12T02:37:18,823 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/__init__.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim 2022-08-12T02:37:18,827 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/data.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim 2022-08-12T02:37:18,833 creating build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim/constants 2022-08-12T02:37:18,835 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants/shared.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim/constants 2022-08-12T02:37:18,840 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants/__init__.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim/constants 2022-08-12T02:37:18,843 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants/gex.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim/constants 2022-08-12T02:37:18,852 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants/targetedcompare.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim/constants 2022-08-12T02:37:18,857 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/webshim/constants/vdj.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/webshim/constants 2022-08-12T02:37:18,863 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/sgt.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger 2022-08-12T02:37:18,868 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/cell_calling.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger 2022-08-12T02:37:18,874 creating build/bdist.linux-armv7l/wheel/bmkcc/cellranger/rna 2022-08-12T02:37:18,876 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/rna/library.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/rna 2022-08-12T02:37:18,881 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/rna/__init__.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/rna 2022-08-12T02:37:18,884 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/matrix.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger 2022-08-12T02:37:18,892 creating build/bdist.linux-armv7l/wheel/bmkcc/cellranger/analysis 2022-08-12T02:37:18,894 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis/bhtsne.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/analysis 2022-08-12T02:37:18,899 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/analysis 2022-08-12T02:37:18,902 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis/singlegenome.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/analysis 2022-08-12T02:37:18,908 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis/stats.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/analysis 2022-08-12T02:37:18,912 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis/io.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/analysis 2022-08-12T02:37:18,916 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis/diffexp.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/analysis 2022-08-12T02:37:18,922 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis/constants.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/analysis 2022-08-12T02:37:18,926 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/analysis/clustering.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger/analysis 2022-08-12T02:37:18,931 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/h5_constants.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger 2022-08-12T02:37:18,935 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/__init__.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger 2022-08-12T02:37:18,939 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/wrapped_tables.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger 2022-08-12T02:37:18,943 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/hdf5.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger 2022-08-12T02:37:18,948 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/sparse.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger 2022-08-12T02:37:18,952 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/bisect.pyx -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger 2022-08-12T02:37:18,956 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/stats.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger 2022-08-12T02:37:18,962 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/bisect.c -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger 2022-08-12T02:37:19,000 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/log_subprocess.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger 2022-08-12T02:37:19,005 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/utils.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger 2022-08-12T02:37:19,011 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/cell_calling_helpers.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger 2022-08-12T02:37:19,018 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/io.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger 2022-08-12T02:37:19,023 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/feature_ref.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger 2022-08-12T02:37:19,029 copying build/lib.linux-armv7l-cpython-39/bmkcc/cellranger/constants.py -> build/bdist.linux-armv7l/wheel/bmkcc/cellranger 2022-08-12T02:37:19,033 copying build/lib.linux-armv7l-cpython-39/bmkcc/__main__.py -> build/bdist.linux-armv7l/wheel/bmkcc 2022-08-12T02:37:19,037 copying build/lib.linux-armv7l-cpython-39/bmkcc/cells.py -> build/bdist.linux-armv7l/wheel/bmkcc 2022-08-12T02:37:19,042 copying build/lib.linux-armv7l-cpython-39/bmkcc/__init__.py -> build/bdist.linux-armv7l/wheel/bmkcc 2022-08-12T02:37:19,046 creating build/bdist.linux-armv7l/wheel/bmkcc/tenkit 2022-08-12T02:37:19,048 copying build/lib.linux-armv7l-cpython-39/bmkcc/tenkit/__init__.py -> build/bdist.linux-armv7l/wheel/bmkcc/tenkit 2022-08-12T02:37:19,052 copying build/lib.linux-armv7l-cpython-39/bmkcc/tenkit/safe_json.py -> build/bdist.linux-armv7l/wheel/bmkcc/tenkit 2022-08-12T02:37:19,056 copying build/lib.linux-armv7l-cpython-39/bmkcc/tenkit/stats.py -> build/bdist.linux-armv7l/wheel/bmkcc/tenkit 2022-08-12T02:37:19,061 copying build/lib.linux-armv7l-cpython-39/bmkcc/tenkit/log_subprocess.py -> build/bdist.linux-armv7l/wheel/bmkcc/tenkit 2022-08-12T02:37:19,065 copying build/lib.linux-armv7l-cpython-39/bmkcc/tenkit/seq.py -> build/bdist.linux-armv7l/wheel/bmkcc/tenkit 2022-08-12T02:37:19,070 copying build/lib.linux-armv7l-cpython-39/bmkcc/tenkit/constants.py -> build/bdist.linux-armv7l/wheel/bmkcc/tenkit 2022-08-12T02:37:19,073 running install_egg_info 2022-08-12T02:37:19,753 Copying bmk_cell_calling.egg-info to build/bdist.linux-armv7l/wheel/bmk_cell_calling-0.2.2-py3.9.egg-info 2022-08-12T02:37:19,781 running install_scripts 2022-08-12T02:37:19,893 creating build/bdist.linux-armv7l/wheel/bmk_cell_calling-0.2.2.dist-info/WHEEL 2022-08-12T02:37:19,899 creating '/tmp/pip-wheel-ygblrweo/bmk_cell_calling-0.2.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-08-12T02:37:19,906 adding 'bmkcc/__init__.py' 2022-08-12T02:37:19,910 adding 'bmkcc/__main__.py' 2022-08-12T02:37:19,913 adding 'bmkcc/cells.py' 2022-08-12T02:37:19,919 adding 'bmkcc/cellranger/__init__.py' 2022-08-12T02:37:20,085 adding 'bmkcc/cellranger/bisect.c' 2022-08-12T02:37:20,523 adding 'bmkcc/cellranger/bisect.cpython-39-arm-linux-gnueabihf.so' 2022-08-12T02:37:20,542 adding 'bmkcc/cellranger/bisect.pyx' 2022-08-12T02:37:20,547 adding 'bmkcc/cellranger/cell_calling.py' 2022-08-12T02:37:20,554 adding 'bmkcc/cellranger/cell_calling_helpers.py' 2022-08-12T02:37:20,558 adding 'bmkcc/cellranger/constants.py' 2022-08-12T02:37:20,564 adding 'bmkcc/cellranger/feature_ref.py' 2022-08-12T02:37:20,566 adding 'bmkcc/cellranger/h5_constants.py' 2022-08-12T02:37:20,570 adding 'bmkcc/cellranger/hdf5.py' 2022-08-12T02:37:20,573 adding 'bmkcc/cellranger/io.py' 2022-08-12T02:37:20,577 adding 'bmkcc/cellranger/log_subprocess.py' 2022-08-12T02:37:20,591 adding 'bmkcc/cellranger/matrix.py' 2022-08-12T02:37:20,595 adding 'bmkcc/cellranger/sgt.py' 2022-08-12T02:37:20,598 adding 'bmkcc/cellranger/sparse.py' 2022-08-12T02:37:20,603 adding 'bmkcc/cellranger/stats.py' 2022-08-12T02:37:20,612 adding 'bmkcc/cellranger/utils.py' 2022-08-12T02:37:20,615 adding 'bmkcc/cellranger/wrapped_tables.py' 2022-08-12T02:37:20,618 adding 'bmkcc/cellranger/analysis/__init__.py' 2022-08-12T02:37:20,621 adding 'bmkcc/cellranger/analysis/bhtsne.py' 2022-08-12T02:37:20,624 adding 'bmkcc/cellranger/analysis/clustering.py' 2022-08-12T02:37:20,626 adding 'bmkcc/cellranger/analysis/constants.py' 2022-08-12T02:37:20,632 adding 'bmkcc/cellranger/analysis/diffexp.py' 2022-08-12T02:37:20,635 adding 'bmkcc/cellranger/analysis/io.py' 2022-08-12T02:37:20,639 adding 'bmkcc/cellranger/analysis/singlegenome.py' 2022-08-12T02:37:20,642 adding 'bmkcc/cellranger/analysis/stats.py' 2022-08-12T02:37:20,645 adding 'bmkcc/cellranger/rna/__init__.py' 2022-08-12T02:37:20,647 adding 'bmkcc/cellranger/rna/library.py' 2022-08-12T02:37:20,651 adding 'bmkcc/cellranger/webshim/__init__.py' 2022-08-12T02:37:20,665 adding 'bmkcc/cellranger/webshim/common.py' 2022-08-12T02:37:20,670 adding 'bmkcc/cellranger/webshim/data.py' 2022-08-12T02:37:20,673 adding 'bmkcc/cellranger/webshim/constants/__init__.py' 2022-08-12T02:37:20,687 adding 'bmkcc/cellranger/webshim/constants/gex.py' 2022-08-12T02:37:20,691 adding 'bmkcc/cellranger/webshim/constants/shared.py' 2022-08-12T02:37:20,695 adding 'bmkcc/cellranger/webshim/constants/targetedcompare.py' 2022-08-12T02:37:20,700 adding 'bmkcc/cellranger/webshim/constants/vdj.py' 2022-08-12T02:37:20,703 adding 'bmkcc/tenkit/__init__.py' 2022-08-12T02:37:20,705 adding 'bmkcc/tenkit/constants.py' 2022-08-12T02:37:20,709 adding 'bmkcc/tenkit/log_subprocess.py' 2022-08-12T02:37:20,712 adding 'bmkcc/tenkit/safe_json.py' 2022-08-12T02:37:20,715 adding 'bmkcc/tenkit/seq.py' 2022-08-12T02:37:20,717 adding 'bmkcc/tenkit/stats.py' 2022-08-12T02:37:20,719 adding 'bmk_cell_calling-0.2.2.dist-info/METADATA' 2022-08-12T02:37:20,720 adding 'bmk_cell_calling-0.2.2.dist-info/WHEEL' 2022-08-12T02:37:20,722 adding 'bmk_cell_calling-0.2.2.dist-info/entry_points.txt' 2022-08-12T02:37:20,723 adding 'bmk_cell_calling-0.2.2.dist-info/top_level.txt' 2022-08-12T02:37:20,726 adding 'bmk_cell_calling-0.2.2.dist-info/RECORD' 2022-08-12T02:37:20,750 removing build/bdist.linux-armv7l/wheel 2022-08-12T02:37:21,173 Building wheel for bmk-cell-calling (setup.py): finished with status 'done' 2022-08-12T02:37:21,198 Created wheel for bmk-cell-calling: filename=bmk_cell_calling-0.2.2-cp39-cp39-linux_armv7l.whl size=536182 sha256=046e3bd9edb11d0b238687b3968b3009ff0ccf90da57c66e00e60c72aeddd58f 2022-08-12T02:37:21,200 Stored in directory: /tmp/pip-ephem-wheel-cache-b4hl6yqx/wheels/cb/63/e0/411009c4ee955ee8494040f42d26791e428226d2cab5fe4cf9 2022-08-12T02:37:21,225 Successfully built bmk-cell-calling 2022-08-12T02:37:21,269 Removed build tracker: '/tmp/pip-build-tracker-r7l55voy'