2022-08-12T08:14:58,616 Created temporary directory: /tmp/pip-ephem-wheel-cache-l3kboejf 2022-08-12T08:14:58,621 Created temporary directory: /tmp/pip-build-tracker-iwqupbem 2022-08-12T08:14:58,622 Initialized build tracking at /tmp/pip-build-tracker-iwqupbem 2022-08-12T08:14:58,622 Created build tracker: /tmp/pip-build-tracker-iwqupbem 2022-08-12T08:14:58,623 Entered build tracker: /tmp/pip-build-tracker-iwqupbem 2022-08-12T08:14:58,624 Created temporary directory: /tmp/pip-wheel-jq2yqz33 2022-08-12T08:14:58,697 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-12T08:14:58,706 2 location(s) to search for versions of altocumulus: 2022-08-12T08:14:58,706 * https://pypi.org/simple/altocumulus/ 2022-08-12T08:14:58,706 * https://www.piwheels.org/simple/altocumulus/ 2022-08-12T08:14:58,707 Fetching project page and analyzing links: https://pypi.org/simple/altocumulus/ 2022-08-12T08:14:58,708 Getting page https://pypi.org/simple/altocumulus/ 2022-08-12T08:14:58,712 Found index url https://pypi.org/simple 2022-08-12T08:14:58,839 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/09/5d/0b244b044b38f8ec9cfa845a3cba04c573a67d7ccf1c6a8c04baea364ec0/altocumulus-1.0.0-py3-none-any.whl#sha256=2de884a46f3f34f241e49bb5e0f50cdcdbd0bafa7b61d706d87820c51c447732 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-12T08:14:58,840 Found link https://files.pythonhosted.org/packages/9b/52/23d85d485cf003959d038964e833c5780e57d9bee631d6e59929eff8a653/altocumulus-1.0.0.tar.gz#sha256=7d2fc66ae1beed14e86cc53bad4e3a42d2d51fa74abbeeb99dbf3ff648e91e74 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 1.0.0 2022-08-12T08:14:58,841 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/ab/14/e585532cdd2355e8552f02661b96cbc6303cb14e5a8b2ed84b35c4b26c11/altocumulus-1.1.0-py3-none-any.whl#sha256=3d42d814adacda078456bfeef866aa672d6cccf7de5c0942530038f62d438625 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-12T08:14:58,842 Found link https://files.pythonhosted.org/packages/cd/d3/a0f9430e9329c46e1116825e04b36595cbedea5e6ea4890e89ba916becf7/altocumulus-1.1.0.tar.gz#sha256=970f0a663f7c87999b686558c59330a4765e4377994696fc6abe1db09eb29035 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 1.1.0 2022-08-12T08:14:58,843 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/5b/58/5cd013ad4d060074d66bdd12dd816040fac29abf103656c6f0f8f21f4101/altocumulus-1.1.1-py3-none-any.whl#sha256=70624d10ada9a6a32e52987a2d8a18e58cc4f90f9c93b6ec2461cf8ff26d6bdf (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-12T08:14:58,844 Found link https://files.pythonhosted.org/packages/4d/f2/8eecb7a86aae1dc170c70db1f0fcdcd668871e0f13d54d544062e66c5c83/altocumulus-1.1.1.tar.gz#sha256=89bfde864f3a564b0275c8cfea136060d038eed729807e21fd3d4247883a118a (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 1.1.1 2022-08-12T08:14:58,845 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/b0/2b/1114389da7745bbaa0cc5a9a64fb86ce44c16176cdd1e4b9f7a851014d74/altocumulus-2.0.0-py3-none-any.whl#sha256=b34e183a927cffd32471a8bc34426be59d4338a376211d7c2c5ead283ae5c66b (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-12T08:14:58,846 Found link https://files.pythonhosted.org/packages/a6/83/bcd960f5d957669bb8c217d9c9996ecd3204ef87c138b570b81d403b4132/altocumulus-2.0.0.tar.gz#sha256=7b0af9eb5f2edbc7ca880207d6e3f6559c96c33fe7c7abaef9a517b9de3e04c0 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.0 2022-08-12T08:14:58,847 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/ef/54/b9e37bb8875663ebb97aca019b6756912139181e60c0d9926ee91962750a/altocumulus-2.0.1-py3-none-any.whl#sha256=504dea5ef674559636981f1ac21ded3c592440f6afffbe5ec3b3eb7378709eb9 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-12T08:14:58,848 Found link https://files.pythonhosted.org/packages/f7/46/dfa9702222dbc6c41f8876f53b705a2ccf5f56f9056fc441c972559dd97c/altocumulus-2.0.1.tar.gz#sha256=11e9776135462a2b82da731ff2880fd6db08f153f4b6cac71bf99fb15e80086e (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.1 2022-08-12T08:14:58,849 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/16/a1/4e83b0a14b19dad7ad67102ff2452156d630f22a3db6193284dd6ff617b8/altocumulus-2.0.2-py3-none-any.whl#sha256=7713e1aafdbf82656442ce1f625af112f620e88a1ea7a133e4d2b7f29989ce47 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-12T08:14:58,850 Found link https://files.pythonhosted.org/packages/15/96/a7ea3de17b028a343e7f98ffb5015584f32577496836dff06a75aac7a4d2/altocumulus-2.0.2.tar.gz#sha256=22f2d62d9722c04768af5d3ccba6260c28a647daa60cadbded3d578f8638a481 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.2 2022-08-12T08:14:58,851 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/05/f3/a9bea6f2f7ee2c792be761a2d924a5fbfcc337c187a0f36efa13743cd91c/altocumulus-2.0.3rc2-py3-none-any.whl#sha256=594e2f499c9b0737c5214df4ec13a1ed993bbdc5802f9aa7683de0d3fc4d860a (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-12T08:14:58,852 Found link https://files.pythonhosted.org/packages/79/86/d13df014d4aa35f67200217164c4c431d1882fc611cad36e36f192cd65da/altocumulus-2.0.3rc2.tar.gz#sha256=d17c4680a2206f67fab99881671b0db4e3ca9a24c7a10a9469efc5179940c688 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.3rc2 2022-08-12T08:14:58,853 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/f7/0a/e8c65b16a72488df427e3e4a672b711fa37fe03864a37ea6f28154d62af2/altocumulus-2.0.3-py3-none-any.whl#sha256=88000e07b14f58c14c089fe90124affa866d75de1c677d26fed6f92d9860a37b (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-12T08:14:58,854 Found link https://files.pythonhosted.org/packages/f1/a4/8967cf2efee181f840262d97502b50fec6daa3f64e006a7da71bd2b98f32/altocumulus-2.0.3.tar.gz#sha256=3adca8b76996dfa4c8ec5675f403c10d0276a28650a4198c8bc8998313595970 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.3 2022-08-12T08:14:58,855 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/42/1c/84d3abed1f49954500d8d3c1a4967bb77535ec2071e5c8ab678394dc5bad/altocumulus-2.1.0-py3-none-any.whl#sha256=77f8a90f688ed65299e995a91a7ead7a1dbbe62a59b178da1c48e6c769244b54 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8) 2022-08-12T08:14:58,856 Found link https://files.pythonhosted.org/packages/40/b8/ccbd0bc3dd767591f3a103b59467df99d2a04b1a29892a4d4573059dc71c/altocumulus-2.1.0.tar.gz#sha256=6d86d52e0d3ac4bf72c2d92ef8ede6bc25f6119352b6fdea25b0f271c4937196 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8), version: 2.1.0 2022-08-12T08:14:58,857 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/f0/1c/e789a37c124c225327a16f07aeb8cb1df3ad911133d275de7c6a5b1c94f8/altocumulus-2.1.1-py3-none-any.whl#sha256=04c8c6e27de89eec825fa3e3c57c6ee3817d347c3f6d43ed979b3a31d543da20 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8) 2022-08-12T08:14:58,858 Found link https://files.pythonhosted.org/packages/43/5d/7b88e06a5c19f092f479cec18a74f0ba114135ff4786c30f088fdf9e83dc/altocumulus-2.1.1.tar.gz#sha256=682da29dbe2bb89e801eb61eb947ae76d9e884ab5d15939f366333fcb68c01f1 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8), version: 2.1.1 2022-08-12T08:14:58,859 Fetching project page and analyzing links: https://www.piwheels.org/simple/altocumulus/ 2022-08-12T08:14:58,860 Getting page https://www.piwheels.org/simple/altocumulus/ 2022-08-12T08:14:58,862 Found index url https://www.piwheels.org/simple 2022-08-12T08:14:59,094 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.1.0-py3-none-any.whl#sha256=c9ebb6759ad8b9adbbe22c9beefd065e8d1243842068eef76fc57cbfce15d005 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3.8) 2022-08-12T08:14:59,095 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.3-py3-none-any.whl#sha256=46f961cfb6d73de6a94b374526fd174bb2c74d158a42a80845c233d21fa30b44 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-12T08:14:59,096 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.3rc2-py3-none-any.whl#sha256=fd5ad8267f381ce8e009870ce1cab5e8c3380d6aa2f639e9a9d203f308eb24b2 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-12T08:14:59,096 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.2-py3-none-any.whl#sha256=9b84ef41234cb17b0f5191b223fc30fcda025c111e328390b7859982c4290d16 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-12T08:14:59,097 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.1-py3-none-any.whl#sha256=d57fb443288d95954c54ee58dd5acd0ddbf5a04f46f193014e8e0644c9987eb8 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-12T08:14:59,097 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.0-py3-none-any.whl#sha256=91ca330ce1605c7e3e28b071db20d5ba04a4efe913b11e3fb652a52a7cc2cdab (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-12T08:14:59,098 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-1.1.1-py3-none-any.whl#sha256=86749f39b1a75e769a544863a18b6fb10700c76da20ab7283556741adf596f8c (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-12T08:14:59,098 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-1.1.0-py3-none-any.whl#sha256=3d42d814adacda078456bfeef866aa672d6cccf7de5c0942530038f62d438625 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-12T08:14:59,099 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-1.0.0-py3-none-any.whl#sha256=2de884a46f3f34f241e49bb5e0f50cdcdbd0bafa7b61d706d87820c51c447732 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-12T08:14:59,099 Skipping link: not a file: https://www.piwheels.org/simple/altocumulus/ 2022-08-12T08:14:59,100 Skipping link: not a file: https://pypi.org/simple/altocumulus/ 2022-08-12T08:14:59,147 Given no hashes to check 1 links for project 'altocumulus': discarding no candidates 2022-08-12T08:14:59,189 Collecting altocumulus==2.1.1 2022-08-12T08:14:59,193 Created temporary directory: /tmp/pip-unpack-zdfk_u_s 2022-08-12T08:14:59,429 Downloading altocumulus-2.1.1.tar.gz (35 kB) 2022-08-12T08:14:59,732 Added altocumulus==2.1.1 from https://files.pythonhosted.org/packages/43/5d/7b88e06a5c19f092f479cec18a74f0ba114135ff4786c30f088fdf9e83dc/altocumulus-2.1.1.tar.gz#sha256=682da29dbe2bb89e801eb61eb947ae76d9e884ab5d15939f366333fcb68c01f1 to build tracker '/tmp/pip-build-tracker-iwqupbem' 2022-08-12T08:14:59,747 Created temporary directory: /tmp/pip-build-env-suazag36 2022-08-12T08:14:59,768 Created temporary directory: /tmp/pip-standalone-pip-5ub8v892 2022-08-12T08:15:02,175 Installing build dependencies: started 2022-08-12T08:15:02,177 Running command pip subprocess to install build dependencies 2022-08-12T08:15:13,499 Using pip 22.1.2 from /tmp/pip-standalone-pip-5ub8v892/__env_pip__.zip/pip (python 3.9) 2022-08-12T08:15:15,276 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-12T08:15:19,336 Collecting setuptools>=42 2022-08-12T08:15:19,630 Using cached https://www.piwheels.org/simple/setuptools/setuptools-64.0.1-py3-none-any.whl (1.2 MB) 2022-08-12T08:15:20,297 Collecting wheel 2022-08-12T08:15:20,331 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-08-12T08:15:21,240 Collecting setuptools_scm[toml]>=3.4 2022-08-12T08:15:21,295 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.0.5-py3-none-any.whl (42 kB) 2022-08-12T08:15:21,829 Collecting packaging>=20.0 2022-08-12T08:15:21,863 Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB) 2022-08-12T08:15:22,110 Collecting typing-extensions 2022-08-12T08:15:22,142 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.3.0-py3-none-any.whl (25 kB) 2022-08-12T08:15:22,419 Collecting tomli>=1.0.0 2022-08-12T08:15:22,450 Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB) 2022-08-12T08:15:23,133 Collecting pyparsing!=3.0.5,>=2.0.2 2022-08-12T08:15:23,172 Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.9-py3-none-any.whl (98 kB) 2022-08-12T08:15:29,939 Installing collected packages: wheel, typing-extensions, tomli, setuptools, pyparsing, packaging, setuptools_scm 2022-08-12T08:15:30,232 Creating /tmp/pip-build-env-suazag36/overlay/bin 2022-08-12T08:15:30,236 changing mode of /tmp/pip-build-env-suazag36/overlay/bin/wheel to 755 2022-08-12T08:15:37,017 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. 2022-08-12T08:15:37,017 sphinx 5.0.0 requires importlib-metadata>=4.4; python_version < "3.10", but you have importlib-metadata 4.0.1 which is incompatible. 2022-08-12T08:15:37,018 Successfully installed packaging-21.3 pyparsing-3.0.9 setuptools-64.0.1 setuptools_scm-7.0.5 tomli-2.0.1 typing-extensions-4.3.0 wheel-0.37.1 2022-08-12T08:15:37,218 --- Logging error --- 2022-08-12T08:15:37,235 Traceback (most recent call last): 2022-08-12T08:15:37,235 File "/tmp/pip-standalone-pip-5ub8v892/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-08-12T08:15:37,236 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-08-12T08:15:37,236 File "/tmp/pip-standalone-pip-5ub8v892/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-08-12T08:15:37,237 extend(render(renderable, render_options)) 2022-08-12T08:15:37,237 File "/tmp/pip-standalone-pip-5ub8v892/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-08-12T08:15:37,237 for render_output in iter_render: 2022-08-12T08:15:37,238 File "/tmp/pip-standalone-pip-5ub8v892/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-08-12T08:15:37,238 for line in lines: 2022-08-12T08:15:37,238 File "/tmp/pip-standalone-pip-5ub8v892/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-08-12T08:15:37,239 for segment in segments: 2022-08-12T08:15:37,239 File "/tmp/pip-standalone-pip-5ub8v892/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-08-12T08:15:37,239 renderable = rich_cast(renderable) 2022-08-12T08:15:37,239 File "/tmp/pip-standalone-pip-5ub8v892/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-08-12T08:15:37,240 renderable = cast_method() 2022-08-12T08:15:37,240 File "/tmp/pip-standalone-pip-5ub8v892/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-08-12T08:15:37,241 pip_cmd = get_best_invocation_for_this_pip() 2022-08-12T08:15:37,241 File "/tmp/pip-standalone-pip-5ub8v892/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip 2022-08-12T08:15:37,241 if found_executable and os.path.samefile( 2022-08-12T08:15:37,242 File "/usr/lib/python3.9/genericpath.py", line 101, in samefile 2022-08-12T08:15:37,242 s2 = os.stat(f2) 2022-08-12T08:15:37,242 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9' 2022-08-12T08:15:37,243 Call stack: 2022-08-12T08:15:37,246 File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main 2022-08-12T08:15:37,246 return _run_code(code, main_globals, None, 2022-08-12T08:15:37,247 File "/usr/lib/python3.9/runpy.py", line 87, in _run_code 2022-08-12T08:15:37,247 exec(code, run_globals) 2022-08-12T08:15:37,247 File "/tmp/pip-standalone-pip-5ub8v892/__env_pip__.zip/pip/__main__.py", line 31, in 2022-08-12T08:15:37,248 sys.exit(_main()) 2022-08-12T08:15:37,248 File "/tmp/pip-standalone-pip-5ub8v892/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-08-12T08:15:37,248 return command.main(cmd_args) 2022-08-12T08:15:37,249 File "/tmp/pip-standalone-pip-5ub8v892/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-08-12T08:15:37,249 return self._main(args) 2022-08-12T08:15:37,249 File "/tmp/pip-standalone-pip-5ub8v892/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-08-12T08:15:37,250 self.handle_pip_version_check(options) 2022-08-12T08:15:37,250 File "/tmp/pip-standalone-pip-5ub8v892/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-08-12T08:15:37,251 pip_self_version_check(session, options) 2022-08-12T08:15:37,251 File "/tmp/pip-standalone-pip-5ub8v892/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-08-12T08:15:37,251 logger.info("[present-rich] %s", upgrade_prompt) 2022-08-12T08:15:37,251 File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info 2022-08-12T08:15:37,252 self._log(INFO, msg, args, **kwargs) 2022-08-12T08:15:37,252 File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log 2022-08-12T08:15:37,252 self.handle(record) 2022-08-12T08:15:37,253 File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle 2022-08-12T08:15:37,253 self.callHandlers(record) 2022-08-12T08:15:37,253 File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers 2022-08-12T08:15:37,253 hdlr.handle(record) 2022-08-12T08:15:37,254 File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle 2022-08-12T08:15:37,254 self.emit(record) 2022-08-12T08:15:37,254 File "/tmp/pip-standalone-pip-5ub8v892/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-08-12T08:15:37,255 self.handleError(record) 2022-08-12T08:15:37,255 Message: '[present-rich] %s' 2022-08-12T08:15:37,255 Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),) 2022-08-12T08:15:37,855 Installing build dependencies: finished with status 'done' 2022-08-12T08:15:37,908 Getting requirements to build wheel: started 2022-08-12T08:15:37,910 Running command Getting requirements to build wheel 2022-08-12T08:15:39,985 Getting requirements to build wheel: finished with status 'done' 2022-08-12T08:15:40,018 Created temporary directory: /tmp/pip-modern-metadata-y9p1u1qr 2022-08-12T08:15:40,023 Preparing metadata (pyproject.toml): started 2022-08-12T08:15:40,025 Running command Preparing metadata (pyproject.toml) 2022-08-12T08:15:48,726 running dist_info 2022-08-12T08:15:49,358 creating /tmp/pip-modern-metadata-y9p1u1qr/altocumulus.egg-info 2022-08-12T08:15:49,958 writing /tmp/pip-modern-metadata-y9p1u1qr/altocumulus.egg-info/PKG-INFO 2022-08-12T08:15:50,527 writing dependency_links to /tmp/pip-modern-metadata-y9p1u1qr/altocumulus.egg-info/dependency_links.txt 2022-08-12T08:15:52,212 writing entry points to /tmp/pip-modern-metadata-y9p1u1qr/altocumulus.egg-info/entry_points.txt 2022-08-12T08:15:53,339 writing requirements to /tmp/pip-modern-metadata-y9p1u1qr/altocumulus.egg-info/requires.txt 2022-08-12T08:15:53,904 writing top-level names to /tmp/pip-modern-metadata-y9p1u1qr/altocumulus.egg-info/top_level.txt 2022-08-12T08:15:53,907 writing manifest file '/tmp/pip-modern-metadata-y9p1u1qr/altocumulus.egg-info/SOURCES.txt' 2022-08-12T08:15:54,671 listing git files failed - pretending there aren't any 2022-08-12T08:15:54,691 reading manifest file '/tmp/pip-modern-metadata-y9p1u1qr/altocumulus.egg-info/SOURCES.txt' 2022-08-12T08:15:54,695 adding license file 'LICENSE' 2022-08-12T08:15:54,701 writing manifest file '/tmp/pip-modern-metadata-y9p1u1qr/altocumulus.egg-info/SOURCES.txt' 2022-08-12T08:15:54,704 creating '/tmp/pip-modern-metadata-y9p1u1qr/altocumulus-2.1.1.dist-info' 2022-08-12T08:15:55,013 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-08-12T08:15:55,254 Preparing metadata (pyproject.toml): finished with status 'done' 2022-08-12T08:15:55,268 Source in /tmp/pip-wheel-jq2yqz33/altocumulus_bf8e4fc7f72442f3a5f107777734d754 has version 2.1.1, which satisfies requirement altocumulus==2.1.1 from https://files.pythonhosted.org/packages/43/5d/7b88e06a5c19f092f479cec18a74f0ba114135ff4786c30f088fdf9e83dc/altocumulus-2.1.1.tar.gz#sha256=682da29dbe2bb89e801eb61eb947ae76d9e884ab5d15939f366333fcb68c01f1 2022-08-12T08:15:55,270 Removed altocumulus==2.1.1 from https://files.pythonhosted.org/packages/43/5d/7b88e06a5c19f092f479cec18a74f0ba114135ff4786c30f088fdf9e83dc/altocumulus-2.1.1.tar.gz#sha256=682da29dbe2bb89e801eb61eb947ae76d9e884ab5d15939f366333fcb68c01f1 from build tracker '/tmp/pip-build-tracker-iwqupbem' 2022-08-12T08:15:55,283 Created temporary directory: /tmp/pip-unpack-c5i7gdgw 2022-08-12T08:15:55,284 Building wheels for collected packages: altocumulus 2022-08-12T08:15:55,294 Created temporary directory: /tmp/pip-wheel-w_x8s6ff 2022-08-12T08:15:55,294 Destination directory: /tmp/pip-wheel-w_x8s6ff 2022-08-12T08:15:55,299 Building wheel for altocumulus (pyproject.toml): started 2022-08-12T08:15:55,301 Running command Building wheel for altocumulus (pyproject.toml) 2022-08-12T08:16:03,605 running bdist_wheel 2022-08-12T08:16:04,825 running build 2022-08-12T08:16:04,825 running build_py 2022-08-12T08:16:05,479 creating build 2022-08-12T08:16:05,479 creating build/lib 2022-08-12T08:16:05,481 creating build/lib/alto 2022-08-12T08:16:05,483 copying alto/__main__.py -> build/lib/alto 2022-08-12T08:16:05,486 copying alto/__init__.py -> build/lib/alto 2022-08-12T08:16:05,488 running egg_info 2022-08-12T08:16:06,725 writing altocumulus.egg-info/PKG-INFO 2022-08-12T08:16:07,305 writing dependency_links to altocumulus.egg-info/dependency_links.txt 2022-08-12T08:16:09,015 writing entry points to altocumulus.egg-info/entry_points.txt 2022-08-12T08:16:10,155 writing requirements to altocumulus.egg-info/requires.txt 2022-08-12T08:16:10,732 writing top-level names to altocumulus.egg-info/top_level.txt 2022-08-12T08:16:10,849 listing git files failed - pretending there aren't any 2022-08-12T08:16:10,870 reading manifest file 'altocumulus.egg-info/SOURCES.txt' 2022-08-12T08:16:10,893 adding license file 'LICENSE' 2022-08-12T08:16:10,903 writing manifest file 'altocumulus.egg-info/SOURCES.txt' 2022-08-12T08:16:10,908 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-12T08:16:10,910 ############################ 2022-08-12T08:16:10,910 # Package would be ignored # 2022-08-12T08:16:10,910 ############################ 2022-08-12T08:16:10,910 Python recognizes 'alto.commands' as an importable package, however it is 2022-08-12T08:16:10,911 included in the distribution as "data". 2022-08-12T08:16:10,911 This behavior is likely to change in future versions of setuptools (and 2022-08-12T08:16:10,911 therefore is considered deprecated). 2022-08-12T08:16:10,912 Please make sure that 'alto.commands' is included as a package by using 2022-08-12T08:16:10,912 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-12T08:16:10,913 You can read more about "package discovery" and "data files" on setuptools 2022-08-12T08:16:10,913 documentation page. 2022-08-12T08:16:10,914 !! 2022-08-12T08:16:10,915 check.warn(importable) 2022-08-12T08:16:10,915 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-12T08:16:10,916 ############################ 2022-08-12T08:16:10,916 # Package would be ignored # 2022-08-12T08:16:10,917 ############################ 2022-08-12T08:16:10,917 Python recognizes 'alto.commands.cromwell' as an importable package, however it is 2022-08-12T08:16:10,917 included in the distribution as "data". 2022-08-12T08:16:10,918 This behavior is likely to change in future versions of setuptools (and 2022-08-12T08:16:10,918 therefore is considered deprecated). 2022-08-12T08:16:10,918 Please make sure that 'alto.commands.cromwell' is included as a package by using 2022-08-12T08:16:10,919 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-12T08:16:10,919 You can read more about "package discovery" and "data files" on setuptools 2022-08-12T08:16:10,920 documentation page. 2022-08-12T08:16:10,920 !! 2022-08-12T08:16:10,921 check.warn(importable) 2022-08-12T08:16:10,921 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-12T08:16:10,922 ############################ 2022-08-12T08:16:10,922 # Package would be ignored # 2022-08-12T08:16:10,923 ############################ 2022-08-12T08:16:10,923 Python recognizes 'alto.commands.terra' as an importable package, however it is 2022-08-12T08:16:10,923 included in the distribution as "data". 2022-08-12T08:16:10,924 This behavior is likely to change in future versions of setuptools (and 2022-08-12T08:16:10,924 therefore is considered deprecated). 2022-08-12T08:16:10,924 Please make sure that 'alto.commands.terra' is included as a package by using 2022-08-12T08:16:10,925 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-12T08:16:10,925 You can read more about "package discovery" and "data files" on setuptools 2022-08-12T08:16:10,926 documentation page. 2022-08-12T08:16:10,926 !! 2022-08-12T08:16:10,927 check.warn(importable) 2022-08-12T08:16:10,927 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-12T08:16:10,928 ############################ 2022-08-12T08:16:10,928 # Package would be ignored # 2022-08-12T08:16:10,929 ############################ 2022-08-12T08:16:10,929 Python recognizes 'alto.tests' as an importable package, however it is 2022-08-12T08:16:10,929 included in the distribution as "data". 2022-08-12T08:16:10,930 This behavior is likely to change in future versions of setuptools (and 2022-08-12T08:16:10,930 therefore is considered deprecated). 2022-08-12T08:16:10,930 Please make sure that 'alto.tests' is included as a package by using 2022-08-12T08:16:10,931 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-12T08:16:10,931 You can read more about "package discovery" and "data files" on setuptools 2022-08-12T08:16:10,932 documentation page. 2022-08-12T08:16:10,933 !! 2022-08-12T08:16:10,933 check.warn(importable) 2022-08-12T08:16:10,934 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-12T08:16:10,934 ############################ 2022-08-12T08:16:10,935 # Package would be ignored # 2022-08-12T08:16:10,935 ############################ 2022-08-12T08:16:10,935 Python recognizes 'alto.tests.inputs' as an importable package, however it is 2022-08-12T08:16:10,936 included in the distribution as "data". 2022-08-12T08:16:10,936 This behavior is likely to change in future versions of setuptools (and 2022-08-12T08:16:10,936 therefore is considered deprecated). 2022-08-12T08:16:10,937 Please make sure that 'alto.tests.inputs' is included as a package by using 2022-08-12T08:16:10,937 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-12T08:16:10,938 You can read more about "package discovery" and "data files" on setuptools 2022-08-12T08:16:10,938 documentation page. 2022-08-12T08:16:10,939 !! 2022-08-12T08:16:10,940 check.warn(importable) 2022-08-12T08:16:10,940 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-12T08:16:10,941 ############################ 2022-08-12T08:16:10,942 # Package would be ignored # 2022-08-12T08:16:10,942 ############################ 2022-08-12T08:16:10,942 Python recognizes 'alto.tests.inputs.flowcell1.s1' as an importable package, however it is 2022-08-12T08:16:10,942 included in the distribution as "data". 2022-08-12T08:16:10,943 This behavior is likely to change in future versions of setuptools (and 2022-08-12T08:16:10,943 therefore is considered deprecated). 2022-08-12T08:16:10,944 Please make sure that 'alto.tests.inputs.flowcell1.s1' is included as a package by using 2022-08-12T08:16:10,944 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-12T08:16:10,945 You can read more about "package discovery" and "data files" on setuptools 2022-08-12T08:16:10,945 documentation page. 2022-08-12T08:16:10,946 !! 2022-08-12T08:16:10,947 check.warn(importable) 2022-08-12T08:16:10,947 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-12T08:16:10,948 ############################ 2022-08-12T08:16:10,948 # Package would be ignored # 2022-08-12T08:16:10,949 ############################ 2022-08-12T08:16:10,949 Python recognizes 'alto.tests.inputs.flowcell1.s2' as an importable package, however it is 2022-08-12T08:16:10,949 included in the distribution as "data". 2022-08-12T08:16:10,950 This behavior is likely to change in future versions of setuptools (and 2022-08-12T08:16:10,950 therefore is considered deprecated). 2022-08-12T08:16:10,951 Please make sure that 'alto.tests.inputs.flowcell1.s2' is included as a package by using 2022-08-12T08:16:10,951 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-12T08:16:10,952 You can read more about "package discovery" and "data files" on setuptools 2022-08-12T08:16:10,952 documentation page. 2022-08-12T08:16:10,953 !! 2022-08-12T08:16:10,954 check.warn(importable) 2022-08-12T08:16:10,954 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-12T08:16:10,955 ############################ 2022-08-12T08:16:10,955 # Package would be ignored # 2022-08-12T08:16:10,955 ############################ 2022-08-12T08:16:10,956 Python recognizes 'alto.tests.inputs.flowcell2.s1' as an importable package, however it is 2022-08-12T08:16:10,956 included in the distribution as "data". 2022-08-12T08:16:10,957 This behavior is likely to change in future versions of setuptools (and 2022-08-12T08:16:10,957 therefore is considered deprecated). 2022-08-12T08:16:10,957 Please make sure that 'alto.tests.inputs.flowcell2.s1' is included as a package by using 2022-08-12T08:16:10,958 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-12T08:16:10,958 You can read more about "package discovery" and "data files" on setuptools 2022-08-12T08:16:10,959 documentation page. 2022-08-12T08:16:10,960 !! 2022-08-12T08:16:10,960 check.warn(importable) 2022-08-12T08:16:10,961 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-12T08:16:10,962 ############################ 2022-08-12T08:16:10,962 # Package would be ignored # 2022-08-12T08:16:10,962 ############################ 2022-08-12T08:16:10,962 Python recognizes 'alto.tests.inputs.flowcell2.s2' as an importable package, however it is 2022-08-12T08:16:10,963 included in the distribution as "data". 2022-08-12T08:16:10,963 This behavior is likely to change in future versions of setuptools (and 2022-08-12T08:16:10,963 therefore is considered deprecated). 2022-08-12T08:16:10,964 Please make sure that 'alto.tests.inputs.flowcell2.s2' is included as a package by using 2022-08-12T08:16:10,964 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-12T08:16:10,965 You can read more about "package discovery" and "data files" on setuptools 2022-08-12T08:16:10,965 documentation page. 2022-08-12T08:16:10,966 !! 2022-08-12T08:16:10,967 check.warn(importable) 2022-08-12T08:16:10,967 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-12T08:16:10,968 ############################ 2022-08-12T08:16:10,968 # Package would be ignored # 2022-08-12T08:16:10,969 ############################ 2022-08-12T08:16:10,969 Python recognizes 'alto.tests.inputs.test_sample' as an importable package, however it is 2022-08-12T08:16:10,969 included in the distribution as "data". 2022-08-12T08:16:10,970 This behavior is likely to change in future versions of setuptools (and 2022-08-12T08:16:10,970 therefore is considered deprecated). 2022-08-12T08:16:10,970 Please make sure that 'alto.tests.inputs.test_sample' is included as a package by using 2022-08-12T08:16:10,971 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-12T08:16:10,971 You can read more about "package discovery" and "data files" on setuptools 2022-08-12T08:16:10,972 documentation page. 2022-08-12T08:16:10,973 !! 2022-08-12T08:16:10,973 check.warn(importable) 2022-08-12T08:16:10,974 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-12T08:16:10,974 ############################ 2022-08-12T08:16:10,975 # Package would be ignored # 2022-08-12T08:16:10,975 ############################ 2022-08-12T08:16:10,975 Python recognizes 'alto.utils' as an importable package, however it is 2022-08-12T08:16:10,976 included in the distribution as "data". 2022-08-12T08:16:10,976 This behavior is likely to change in future versions of setuptools (and 2022-08-12T08:16:10,976 therefore is considered deprecated). 2022-08-12T08:16:10,977 Please make sure that 'alto.utils' is included as a package by using 2022-08-12T08:16:10,977 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-12T08:16:10,978 You can read more about "package discovery" and "data files" on setuptools 2022-08-12T08:16:10,978 documentation page. 2022-08-12T08:16:10,979 !! 2022-08-12T08:16:10,980 check.warn(importable) 2022-08-12T08:16:10,980 creating build/lib/alto/commands 2022-08-12T08:16:10,980 copying alto/commands/__init__.py -> build/lib/alto/commands 2022-08-12T08:16:10,981 copying alto/commands/parse_monitoring_log.py -> build/lib/alto/commands 2022-08-12T08:16:10,981 copying alto/commands/query.py -> build/lib/alto/commands 2022-08-12T08:16:10,981 copying alto/commands/upload.py -> build/lib/alto/commands 2022-08-12T08:16:10,982 creating build/lib/alto/commands/cromwell 2022-08-12T08:16:10,982 copying alto/commands/cromwell/__init__.py -> build/lib/alto/commands/cromwell 2022-08-12T08:16:10,982 copying alto/commands/cromwell/abort.py -> build/lib/alto/commands/cromwell 2022-08-12T08:16:10,982 copying alto/commands/cromwell/check_status.py -> build/lib/alto/commands/cromwell 2022-08-12T08:16:10,983 copying alto/commands/cromwell/get_logs.py -> build/lib/alto/commands/cromwell 2022-08-12T08:16:10,983 copying alto/commands/cromwell/get_metadata.py -> build/lib/alto/commands/cromwell 2022-08-12T08:16:10,983 copying alto/commands/cromwell/list_jobs.py -> build/lib/alto/commands/cromwell 2022-08-12T08:16:10,984 copying alto/commands/cromwell/run.py -> build/lib/alto/commands/cromwell 2022-08-12T08:16:10,984 creating build/lib/alto/commands/terra 2022-08-12T08:16:10,984 copying alto/commands/terra/__init__.py -> build/lib/alto/commands/terra 2022-08-12T08:16:10,987 copying alto/commands/terra/add_method.py -> build/lib/alto/commands/terra 2022-08-12T08:16:10,991 copying alto/commands/terra/remove_method.py -> build/lib/alto/commands/terra 2022-08-12T08:16:10,995 copying alto/commands/terra/run.py -> build/lib/alto/commands/terra 2022-08-12T08:16:11,000 copying alto/commands/terra/storage_estimate.py -> build/lib/alto/commands/terra 2022-08-12T08:16:11,003 creating build/lib/alto/tests 2022-08-12T08:16:11,005 copying alto/tests/__init__.py -> build/lib/alto/tests 2022-08-12T08:16:11,008 copying alto/tests/command_tests.py -> build/lib/alto/tests 2022-08-12T08:16:11,012 copying alto/tests/test.json -> build/lib/alto/tests 2022-08-12T08:16:11,015 creating build/lib/alto/tests/inputs 2022-08-12T08:16:11,017 copying alto/tests/inputs/echo.wdl -> build/lib/alto/tests/inputs 2022-08-12T08:16:11,021 creating build/lib/alto/tests/inputs/flowcell1 2022-08-12T08:16:11,022 creating build/lib/alto/tests/inputs/flowcell1/s1 2022-08-12T08:16:11,024 copying alto/tests/inputs/flowcell1/s1/s1_I1.fastq.gz -> build/lib/alto/tests/inputs/flowcell1/s1 2022-08-12T08:16:11,027 copying alto/tests/inputs/flowcell1/s1/s1_R1.fastq.gz -> build/lib/alto/tests/inputs/flowcell1/s1 2022-08-12T08:16:11,030 copying alto/tests/inputs/flowcell1/s1/s1_R2.fastq.gz -> build/lib/alto/tests/inputs/flowcell1/s1 2022-08-12T08:16:11,034 creating build/lib/alto/tests/inputs/flowcell1/s2 2022-08-12T08:16:11,035 copying alto/tests/inputs/flowcell1/s2/s2_I1.fastq.gz -> build/lib/alto/tests/inputs/flowcell1/s2 2022-08-12T08:16:11,039 copying alto/tests/inputs/flowcell1/s2/s2_R1.fastq.gz -> build/lib/alto/tests/inputs/flowcell1/s2 2022-08-12T08:16:11,043 copying alto/tests/inputs/flowcell1/s2/s2_R2.fastq.gz -> build/lib/alto/tests/inputs/flowcell1/s2 2022-08-12T08:16:11,046 creating build/lib/alto/tests/inputs/flowcell2 2022-08-12T08:16:11,047 creating build/lib/alto/tests/inputs/flowcell2/s1 2022-08-12T08:16:11,049 copying alto/tests/inputs/flowcell2/s1/s1_I1.fastq.gz -> build/lib/alto/tests/inputs/flowcell2/s1 2022-08-12T08:16:11,052 copying alto/tests/inputs/flowcell2/s1/s1_R1.fastq.gz -> build/lib/alto/tests/inputs/flowcell2/s1 2022-08-12T08:16:11,056 copying alto/tests/inputs/flowcell2/s1/s1_R2.fastq.gz -> build/lib/alto/tests/inputs/flowcell2/s1 2022-08-12T08:16:11,059 creating build/lib/alto/tests/inputs/flowcell2/s2 2022-08-12T08:16:11,060 copying alto/tests/inputs/flowcell2/s2/s2_I1.fastq.gz -> build/lib/alto/tests/inputs/flowcell2/s2 2022-08-12T08:16:11,064 copying alto/tests/inputs/flowcell2/s2/s2_R1.fastq.gz -> build/lib/alto/tests/inputs/flowcell2/s2 2022-08-12T08:16:11,067 copying alto/tests/inputs/flowcell2/s2/s2_R2.fastq.gz -> build/lib/alto/tests/inputs/flowcell2/s2 2022-08-12T08:16:11,070 creating build/lib/alto/tests/inputs/test_sample 2022-08-12T08:16:11,071 copying alto/tests/inputs/test_sample/test_sample_S1_L001_I1_001.fastq.gz -> build/lib/alto/tests/inputs/test_sample 2022-08-12T08:16:11,075 copying alto/tests/inputs/test_sample/test_sample_S1_L001_R1_001.fastq.gz -> build/lib/alto/tests/inputs/test_sample 2022-08-12T08:16:11,078 copying alto/tests/inputs/test_sample/test_sample_S1_L001_R2_001.fastq.gz -> build/lib/alto/tests/inputs/test_sample 2022-08-12T08:16:11,081 creating build/lib/alto/utils 2022-08-12T08:16:11,083 copying alto/utils/__init__.py -> build/lib/alto/utils 2022-08-12T08:16:11,087 copying alto/utils/bcl_utils.py -> build/lib/alto/utils 2022-08-12T08:16:11,091 copying alto/utils/dockstore_utils.py -> build/lib/alto/utils 2022-08-12T08:16:11,095 copying alto/utils/fastq_utils.py -> build/lib/alto/utils 2022-08-12T08:16:11,099 copying alto/utils/firecloud_utils.py -> build/lib/alto/utils 2022-08-12T08:16:11,103 copying alto/utils/io_utils.py -> build/lib/alto/utils 2022-08-12T08:16:12,333 installing to build/bdist.linux-armv7l/wheel 2022-08-12T08:16:12,334 running install 2022-08-12T08:16:12,395 running install_lib 2022-08-12T08:16:13,001 creating build/bdist.linux-armv7l 2022-08-12T08:16:13,002 creating build/bdist.linux-armv7l/wheel 2022-08-12T08:16:13,005 creating build/bdist.linux-armv7l/wheel/alto 2022-08-12T08:16:13,008 creating build/bdist.linux-armv7l/wheel/alto/tests 2022-08-12T08:16:13,010 copying build/lib/alto/tests/test.json -> build/bdist.linux-armv7l/wheel/alto/tests 2022-08-12T08:16:13,014 creating build/bdist.linux-armv7l/wheel/alto/tests/inputs 2022-08-12T08:16:13,017 creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1 2022-08-12T08:16:13,019 creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s1 2022-08-12T08:16:13,021 copying build/lib/alto/tests/inputs/flowcell1/s1/s1_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s1 2022-08-12T08:16:13,025 copying build/lib/alto/tests/inputs/flowcell1/s1/s1_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s1 2022-08-12T08:16:13,028 copying build/lib/alto/tests/inputs/flowcell1/s1/s1_I1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s1 2022-08-12T08:16:13,032 creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s2 2022-08-12T08:16:13,033 copying build/lib/alto/tests/inputs/flowcell1/s2/s2_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s2 2022-08-12T08:16:13,037 copying build/lib/alto/tests/inputs/flowcell1/s2/s2_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s2 2022-08-12T08:16:13,041 copying build/lib/alto/tests/inputs/flowcell1/s2/s2_I1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s2 2022-08-12T08:16:13,044 creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2 2022-08-12T08:16:13,047 creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s1 2022-08-12T08:16:13,049 copying build/lib/alto/tests/inputs/flowcell2/s1/s1_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s1 2022-08-12T08:16:13,052 copying build/lib/alto/tests/inputs/flowcell2/s1/s1_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s1 2022-08-12T08:16:13,055 copying build/lib/alto/tests/inputs/flowcell2/s1/s1_I1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s1 2022-08-12T08:16:13,059 creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s2 2022-08-12T08:16:13,060 copying build/lib/alto/tests/inputs/flowcell2/s2/s2_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s2 2022-08-12T08:16:13,063 copying build/lib/alto/tests/inputs/flowcell2/s2/s2_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s2 2022-08-12T08:16:13,066 copying build/lib/alto/tests/inputs/flowcell2/s2/s2_I1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s2 2022-08-12T08:16:13,070 creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/test_sample 2022-08-12T08:16:13,072 copying build/lib/alto/tests/inputs/test_sample/test_sample_S1_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/test_sample 2022-08-12T08:16:13,075 copying build/lib/alto/tests/inputs/test_sample/test_sample_S1_L001_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/test_sample 2022-08-12T08:16:13,078 copying build/lib/alto/tests/inputs/test_sample/test_sample_S1_L001_I1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/test_sample 2022-08-12T08:16:13,080 copying build/lib/alto/tests/inputs/echo.wdl -> build/bdist.linux-armv7l/wheel/alto/tests/inputs 2022-08-12T08:16:13,084 copying build/lib/alto/tests/__init__.py -> build/bdist.linux-armv7l/wheel/alto/tests 2022-08-12T08:16:13,087 copying build/lib/alto/tests/command_tests.py -> build/bdist.linux-armv7l/wheel/alto/tests 2022-08-12T08:16:13,091 creating build/bdist.linux-armv7l/wheel/alto/commands 2022-08-12T08:16:13,093 copying build/lib/alto/commands/upload.py -> build/bdist.linux-armv7l/wheel/alto/commands 2022-08-12T08:16:13,096 copying build/lib/alto/commands/query.py -> build/bdist.linux-armv7l/wheel/alto/commands 2022-08-12T08:16:13,101 creating build/bdist.linux-armv7l/wheel/alto/commands/terra 2022-08-12T08:16:13,103 copying build/lib/alto/commands/terra/add_method.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra 2022-08-12T08:16:13,107 copying build/lib/alto/commands/terra/storage_estimate.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra 2022-08-12T08:16:13,110 copying build/lib/alto/commands/terra/run.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra 2022-08-12T08:16:13,114 copying build/lib/alto/commands/terra/remove_method.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra 2022-08-12T08:16:13,118 copying build/lib/alto/commands/terra/__init__.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra 2022-08-12T08:16:13,122 creating build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2022-08-12T08:16:13,124 copying build/lib/alto/commands/cromwell/list_jobs.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2022-08-12T08:16:13,128 copying build/lib/alto/commands/cromwell/check_status.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2022-08-12T08:16:13,132 copying build/lib/alto/commands/cromwell/get_logs.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2022-08-12T08:16:13,136 copying build/lib/alto/commands/cromwell/run.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2022-08-12T08:16:13,141 copying build/lib/alto/commands/cromwell/__init__.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2022-08-12T08:16:13,145 copying build/lib/alto/commands/cromwell/get_metadata.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2022-08-12T08:16:13,149 copying build/lib/alto/commands/cromwell/abort.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2022-08-12T08:16:13,152 copying build/lib/alto/commands/__init__.py -> build/bdist.linux-armv7l/wheel/alto/commands 2022-08-12T08:16:13,155 copying build/lib/alto/commands/parse_monitoring_log.py -> build/bdist.linux-armv7l/wheel/alto/commands 2022-08-12T08:16:13,159 copying build/lib/alto/__main__.py -> build/bdist.linux-armv7l/wheel/alto 2022-08-12T08:16:13,163 copying build/lib/alto/__init__.py -> build/bdist.linux-armv7l/wheel/alto 2022-08-12T08:16:13,167 creating build/bdist.linux-armv7l/wheel/alto/utils 2022-08-12T08:16:13,169 copying build/lib/alto/utils/dockstore_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils 2022-08-12T08:16:13,174 copying build/lib/alto/utils/io_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils 2022-08-12T08:16:13,178 copying build/lib/alto/utils/__init__.py -> build/bdist.linux-armv7l/wheel/alto/utils 2022-08-12T08:16:13,182 copying build/lib/alto/utils/fastq_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils 2022-08-12T08:16:13,185 copying build/lib/alto/utils/firecloud_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils 2022-08-12T08:16:13,189 copying build/lib/alto/utils/bcl_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils 2022-08-12T08:16:13,193 running install_egg_info 2022-08-12T08:16:13,799 Copying altocumulus.egg-info to build/bdist.linux-armv7l/wheel/altocumulus-2.1.1-py3.9.egg-info 2022-08-12T08:16:13,827 running install_scripts 2022-08-12T08:16:14,015 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-08-12T08:16:14,024 creating build/bdist.linux-armv7l/wheel/altocumulus-2.1.1.dist-info/WHEEL 2022-08-12T08:16:14,028 creating '/tmp/pip-wheel-w_x8s6ff/tmplcwwcuq_/altocumulus-2.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-08-12T08:16:14,033 adding 'alto/__init__.py' 2022-08-12T08:16:14,035 adding 'alto/__main__.py' 2022-08-12T08:16:14,039 adding 'alto/commands/__init__.py' 2022-08-12T08:16:14,041 adding 'alto/commands/parse_monitoring_log.py' 2022-08-12T08:16:14,044 adding 'alto/commands/query.py' 2022-08-12T08:16:14,047 adding 'alto/commands/upload.py' 2022-08-12T08:16:14,051 adding 'alto/commands/cromwell/__init__.py' 2022-08-12T08:16:14,053 adding 'alto/commands/cromwell/abort.py' 2022-08-12T08:16:14,055 adding 'alto/commands/cromwell/check_status.py' 2022-08-12T08:16:14,058 adding 'alto/commands/cromwell/get_logs.py' 2022-08-12T08:16:14,061 adding 'alto/commands/cromwell/get_metadata.py' 2022-08-12T08:16:14,064 adding 'alto/commands/cromwell/list_jobs.py' 2022-08-12T08:16:14,068 adding 'alto/commands/cromwell/run.py' 2022-08-12T08:16:14,072 adding 'alto/commands/terra/__init__.py' 2022-08-12T08:16:14,074 adding 'alto/commands/terra/add_method.py' 2022-08-12T08:16:14,077 adding 'alto/commands/terra/remove_method.py' 2022-08-12T08:16:14,081 adding 'alto/commands/terra/run.py' 2022-08-12T08:16:14,083 adding 'alto/commands/terra/storage_estimate.py' 2022-08-12T08:16:14,087 adding 'alto/tests/__init__.py' 2022-08-12T08:16:14,089 adding 'alto/tests/command_tests.py' 2022-08-12T08:16:14,091 adding 'alto/tests/test.json' 2022-08-12T08:16:14,095 adding 'alto/tests/inputs/echo.wdl' 2022-08-12T08:16:14,099 adding 'alto/tests/inputs/flowcell1/s1/s1_I1.fastq.gz' 2022-08-12T08:16:14,101 adding 'alto/tests/inputs/flowcell1/s1/s1_R1.fastq.gz' 2022-08-12T08:16:14,103 adding 'alto/tests/inputs/flowcell1/s1/s1_R2.fastq.gz' 2022-08-12T08:16:14,107 adding 'alto/tests/inputs/flowcell1/s2/s2_I1.fastq.gz' 2022-08-12T08:16:14,109 adding 'alto/tests/inputs/flowcell1/s2/s2_R1.fastq.gz' 2022-08-12T08:16:14,111 adding 'alto/tests/inputs/flowcell1/s2/s2_R2.fastq.gz' 2022-08-12T08:16:14,115 adding 'alto/tests/inputs/flowcell2/s1/s1_I1.fastq.gz' 2022-08-12T08:16:14,117 adding 'alto/tests/inputs/flowcell2/s1/s1_R1.fastq.gz' 2022-08-12T08:16:14,119 adding 'alto/tests/inputs/flowcell2/s1/s1_R2.fastq.gz' 2022-08-12T08:16:14,122 adding 'alto/tests/inputs/flowcell2/s2/s2_I1.fastq.gz' 2022-08-12T08:16:14,124 adding 'alto/tests/inputs/flowcell2/s2/s2_R1.fastq.gz' 2022-08-12T08:16:14,126 adding 'alto/tests/inputs/flowcell2/s2/s2_R2.fastq.gz' 2022-08-12T08:16:14,130 adding 'alto/tests/inputs/test_sample/test_sample_S1_L001_I1_001.fastq.gz' 2022-08-12T08:16:14,132 adding 'alto/tests/inputs/test_sample/test_sample_S1_L001_R1_001.fastq.gz' 2022-08-12T08:16:14,134 adding 'alto/tests/inputs/test_sample/test_sample_S1_L001_R2_001.fastq.gz' 2022-08-12T08:16:14,138 adding 'alto/utils/__init__.py' 2022-08-12T08:16:14,141 adding 'alto/utils/bcl_utils.py' 2022-08-12T08:16:14,144 adding 'alto/utils/dockstore_utils.py' 2022-08-12T08:16:14,146 adding 'alto/utils/fastq_utils.py' 2022-08-12T08:16:14,149 adding 'alto/utils/firecloud_utils.py' 2022-08-12T08:16:14,154 adding 'alto/utils/io_utils.py' 2022-08-12T08:16:14,159 adding 'altocumulus-2.1.1.dist-info/LICENSE' 2022-08-12T08:16:14,161 adding 'altocumulus-2.1.1.dist-info/METADATA' 2022-08-12T08:16:14,163 adding 'altocumulus-2.1.1.dist-info/WHEEL' 2022-08-12T08:16:14,164 adding 'altocumulus-2.1.1.dist-info/entry_points.txt' 2022-08-12T08:16:14,166 adding 'altocumulus-2.1.1.dist-info/top_level.txt' 2022-08-12T08:16:14,169 adding 'altocumulus-2.1.1.dist-info/RECORD' 2022-08-12T08:16:14,174 removing build/bdist.linux-armv7l/wheel 2022-08-12T08:16:14,497 Building wheel for altocumulus (pyproject.toml): finished with status 'done' 2022-08-12T08:16:14,511 Created wheel for altocumulus: filename=altocumulus-2.1.1-py3-none-any.whl size=35929 sha256=fe48bca28a77907e9b690d7fd0116393c6d9ee0a892c5538d7f5747111ecf0e2 2022-08-12T08:16:14,513 Stored in directory: /tmp/pip-ephem-wheel-cache-l3kboejf/wheels/f1/e4/28/576c66be97103b40226faaf3bea2b30f2135dc3225382e6af1 2022-08-12T08:16:14,538 Successfully built altocumulus 2022-08-12T08:16:14,548 Removed build tracker: '/tmp/pip-build-tracker-iwqupbem'