2022-08-13T23:30:41,793 Created temporary directory: /tmp/pip-ephem-wheel-cache-ir4944il 2022-08-13T23:30:41,799 Created temporary directory: /tmp/pip-build-tracker-c13axf93 2022-08-13T23:30:41,800 Initialized build tracking at /tmp/pip-build-tracker-c13axf93 2022-08-13T23:30:41,800 Created build tracker: /tmp/pip-build-tracker-c13axf93 2022-08-13T23:30:41,801 Entered build tracker: /tmp/pip-build-tracker-c13axf93 2022-08-13T23:30:41,802 Created temporary directory: /tmp/pip-wheel-7p483yv0 2022-08-13T23:30:41,875 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-13T23:30:41,883 2 location(s) to search for versions of shephard: 2022-08-13T23:30:41,883 * https://pypi.org/simple/shephard/ 2022-08-13T23:30:41,883 * https://www.piwheels.org/simple/shephard/ 2022-08-13T23:30:41,884 Fetching project page and analyzing links: https://pypi.org/simple/shephard/ 2022-08-13T23:30:41,885 Getting page https://pypi.org/simple/shephard/ 2022-08-13T23:30:41,889 Found index url https://pypi.org/simple 2022-08-13T23:30:42,073 Found link https://files.pythonhosted.org/packages/a9/95/cbdbdeb72c0c4970872dc8b61c9df622274cc80602640b478e234c921234/shephard-0.1.5.tar.gz#sha256=dde3b1d4760dff0a87253ea62b9cf0762efd76c4c6aaeae254017e7dd58de730 (from https://pypi.org/simple/shephard/), version: 0.1.5 2022-08-13T23:30:42,074 Found link https://files.pythonhosted.org/packages/e9/11/69a637d6d4e0cb3a2addc9c06587e781747dfee014076fdaab76d466c46f/shephard-0.1.7.tar.gz#sha256=fc335190dca3e216cdfb474656b171b519c914c1a0907613f0e452e72e902c37 (from https://pypi.org/simple/shephard/), version: 0.1.7 2022-08-13T23:30:42,075 Found link https://files.pythonhosted.org/packages/b7/90/ea0b27088b3586d48ecaaae9743f8289d28c8e602c4aee5bb4e342b06fc5/shephard-0.1.8.tar.gz#sha256=ef741c657dac4ce44f5e94f73fe3721b4e8873e7b9f5c4b998567936db232335 (from https://pypi.org/simple/shephard/), version: 0.1.8 2022-08-13T23:30:42,076 Fetching project page and analyzing links: https://www.piwheels.org/simple/shephard/ 2022-08-13T23:30:42,076 Getting page https://www.piwheels.org/simple/shephard/ 2022-08-13T23:30:42,078 Found index url https://www.piwheels.org/simple 2022-08-13T23:30:42,309 Skipping link: No binaries permitted for shephard: https://www.piwheels.org/simple/shephard/shephard-0.1.7-py3-none-any.whl#sha256=e515f924da74d106bd56b75ebb3d14350dfd59ecae19d4004c155b7894558ee9 (from https://www.piwheels.org/simple/shephard/) 2022-08-13T23:30:42,310 Skipping link: No binaries permitted for shephard: https://www.piwheels.org/simple/shephard/shephard-0.1.5-py3-none-any.whl#sha256=920236db73af811e8085b5527ca1713d3434695a2dc7a8a4da603b7034a40f67 (from https://www.piwheels.org/simple/shephard/) 2022-08-13T23:30:42,310 Skipping link: not a file: https://www.piwheels.org/simple/shephard/ 2022-08-13T23:30:42,311 Skipping link: not a file: https://pypi.org/simple/shephard/ 2022-08-13T23:30:42,345 Given no hashes to check 1 links for project 'shephard': discarding no candidates 2022-08-13T23:30:42,376 Collecting shephard==0.1.8 2022-08-13T23:30:42,381 Created temporary directory: /tmp/pip-unpack-ytieqwwz 2022-08-13T23:30:42,780 Downloading shephard-0.1.8.tar.gz (172 kB) 2022-08-13T23:30:43,381 Added shephard==0.1.8 from https://files.pythonhosted.org/packages/b7/90/ea0b27088b3586d48ecaaae9743f8289d28c8e602c4aee5bb4e342b06fc5/shephard-0.1.8.tar.gz#sha256=ef741c657dac4ce44f5e94f73fe3721b4e8873e7b9f5c4b998567936db232335 to build tracker '/tmp/pip-build-tracker-c13axf93' 2022-08-13T23:30:43,384 Running setup.py (path:/tmp/pip-wheel-7p483yv0/shephard_f64257c26d884a02aa74b31024789e07/setup.py) egg_info for package shephard 2022-08-13T23:30:43,385 Created temporary directory: /tmp/pip-pip-egg-info-c7bwtt4m 2022-08-13T23:30:43,386 Preparing metadata (setup.py): started 2022-08-13T23:30:43,388 Running command python setup.py egg_info 2022-08-13T23:30:50,958 running egg_info 2022-08-13T23:30:50,968 creating /tmp/pip-pip-egg-info-c7bwtt4m/shephard.egg-info 2022-08-13T23:30:51,661 writing /tmp/pip-pip-egg-info-c7bwtt4m/shephard.egg-info/PKG-INFO 2022-08-13T23:30:52,249 writing dependency_links to /tmp/pip-pip-egg-info-c7bwtt4m/shephard.egg-info/dependency_links.txt 2022-08-13T23:30:55,171 writing requirements to /tmp/pip-pip-egg-info-c7bwtt4m/shephard.egg-info/requires.txt 2022-08-13T23:30:55,757 writing top-level names to /tmp/pip-pip-egg-info-c7bwtt4m/shephard.egg-info/top_level.txt 2022-08-13T23:30:55,760 writing manifest file '/tmp/pip-pip-egg-info-c7bwtt4m/shephard.egg-info/SOURCES.txt' 2022-08-13T23:30:56,013 reading manifest file '/tmp/pip-pip-egg-info-c7bwtt4m/shephard.egg-info/SOURCES.txt' 2022-08-13T23:30:56,016 reading manifest template 'MANIFEST.in' 2022-08-13T23:30:56,035 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:531: UserWarning: Normalizing 'v0.1.8' to '0.1.8' 2022-08-13T23:30:56,035 warnings.warn(tmpl.format(**locals())) 2022-08-13T23:30:56,035 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2022-08-13T23:30:56,036 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2022-08-13T23:30:56,037 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-08-13T23:30:56,038 adding license file 'LICENSE' 2022-08-13T23:30:56,049 writing manifest file '/tmp/pip-pip-egg-info-c7bwtt4m/shephard.egg-info/SOURCES.txt' 2022-08-13T23:30:56,269 Preparing metadata (setup.py): finished with status 'done' 2022-08-13T23:30:56,280 Source in /tmp/pip-wheel-7p483yv0/shephard_f64257c26d884a02aa74b31024789e07 has version 0.1.8, which satisfies requirement shephard==0.1.8 from https://files.pythonhosted.org/packages/b7/90/ea0b27088b3586d48ecaaae9743f8289d28c8e602c4aee5bb4e342b06fc5/shephard-0.1.8.tar.gz#sha256=ef741c657dac4ce44f5e94f73fe3721b4e8873e7b9f5c4b998567936db232335 2022-08-13T23:30:56,282 Removed shephard==0.1.8 from https://files.pythonhosted.org/packages/b7/90/ea0b27088b3586d48ecaaae9743f8289d28c8e602c4aee5bb4e342b06fc5/shephard-0.1.8.tar.gz#sha256=ef741c657dac4ce44f5e94f73fe3721b4e8873e7b9f5c4b998567936db232335 from build tracker '/tmp/pip-build-tracker-c13axf93' 2022-08-13T23:30:56,291 Created temporary directory: /tmp/pip-unpack-5703eo_7 2022-08-13T23:30:56,292 Building wheels for collected packages: shephard 2022-08-13T23:30:56,301 Created temporary directory: /tmp/pip-wheel-d9x8rfp2 2022-08-13T23:30:56,302 Building wheel for shephard (setup.py): started 2022-08-13T23:30:56,304 Destination directory: /tmp/pip-wheel-d9x8rfp2 2022-08-13T23:30:56,304 Running command python setup.py bdist_wheel 2022-08-13T23:31:02,885 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:531: UserWarning: Normalizing 'v0.1.8' to '0.1.8' 2022-08-13T23:31:02,886 warnings.warn(tmpl.format(**locals())) 2022-08-13T23:31:03,179 running bdist_wheel 2022-08-13T23:31:03,518 running build 2022-08-13T23:31:03,519 running build_py 2022-08-13T23:31:03,532 creating build 2022-08-13T23:31:03,533 creating build/lib 2022-08-13T23:31:03,534 creating build/lib/shephard 2022-08-13T23:31:03,537 copying shephard/test_domains_sites.py -> build/lib/shephard 2022-08-13T23:31:03,540 copying shephard/__init__.py -> build/lib/shephard 2022-08-13T23:31:03,544 copying shephard/site.py -> build/lib/shephard 2022-08-13T23:31:03,548 copying shephard/track.py -> build/lib/shephard 2022-08-13T23:31:03,553 copying shephard/exceptions.py -> build/lib/shephard 2022-08-13T23:31:03,556 copying shephard/general_utilities.py -> build/lib/shephard 2022-08-13T23:31:03,560 copying shephard/sequence_utilities.py -> build/lib/shephard 2022-08-13T23:31:03,564 copying shephard/proteome.py -> build/lib/shephard 2022-08-13T23:31:03,570 copying shephard/domain.py -> build/lib/shephard 2022-08-13T23:31:03,575 copying shephard/protein.py -> build/lib/shephard 2022-08-13T23:31:03,583 copying shephard/_version.py -> build/lib/shephard 2022-08-13T23:31:03,589 creating build/lib/shephard/tests 2022-08-13T23:31:03,591 copying shephard/tests/test_add_remove_annotations.py -> build/lib/shephard/tests 2022-08-13T23:31:03,595 copying shephard/tests/test_si_domains.py -> build/lib/shephard/tests 2022-08-13T23:31:03,598 copying shephard/tests/test_logic.py -> build/lib/shephard/tests 2022-08-13T23:31:03,601 copying shephard/tests/__init__.py -> build/lib/shephard/tests 2022-08-13T23:31:03,604 copying shephard/tests/test_shephard.py -> build/lib/shephard/tests 2022-08-13T23:31:03,608 copying shephard/tests/test_interfaces.py -> build/lib/shephard/tests 2022-08-13T23:31:03,611 copying shephard/tests/test_domains.py -> build/lib/shephard/tests 2022-08-13T23:31:03,616 copying shephard/tests/test_si_sites.py -> build/lib/shephard/tests 2022-08-13T23:31:03,619 copying shephard/tests/conftest.py -> build/lib/shephard/tests 2022-08-13T23:31:03,623 copying shephard/tests/test_tracks.py -> build/lib/shephard/tests 2022-08-13T23:31:03,626 copying shephard/tests/test_apis_fasta.py -> build/lib/shephard/tests 2022-08-13T23:31:03,629 copying shephard/tests/example_test_function.py -> build/lib/shephard/tests 2022-08-13T23:31:03,632 copying shephard/tests/test_sequence_tools.py -> build/lib/shephard/tests 2022-08-13T23:31:03,636 copying shephard/tests/test_proteome.py -> build/lib/shephard/tests 2022-08-13T23:31:03,640 copying shephard/tests/test_protein.py -> build/lib/shephard/tests 2022-08-13T23:31:03,644 copying shephard/tests/test_sites.py -> build/lib/shephard/tests 2022-08-13T23:31:03,647 copying shephard/tests/test_track_tools.py -> build/lib/shephard/tests 2022-08-13T23:31:03,651 copying shephard/tests/test_domain_tools.py -> build/lib/shephard/tests 2022-08-13T23:31:03,654 copying shephard/tests/test_si_tracks.py -> build/lib/shephard/tests 2022-08-13T23:31:03,660 creating build/lib/shephard/apis 2022-08-13T23:31:03,661 copying shephard/apis/__init__.py -> build/lib/shephard/apis 2022-08-13T23:31:03,665 copying shephard/apis/uniprot.py -> build/lib/shephard/apis 2022-08-13T23:31:03,669 copying shephard/apis/fasta.py -> build/lib/shephard/apis 2022-08-13T23:31:03,675 creating build/lib/shephard/interfaces 2022-08-13T23:31:03,676 copying shephard/interfaces/si_sites.py -> build/lib/shephard/interfaces 2022-08-13T23:31:03,681 copying shephard/interfaces/__init__.py -> build/lib/shephard/interfaces 2022-08-13T23:31:03,684 copying shephard/interfaces/interface_tools.py -> build/lib/shephard/interfaces 2022-08-13T23:31:03,688 copying shephard/interfaces/si_domains.py -> build/lib/shephard/interfaces 2022-08-13T23:31:03,693 copying shephard/interfaces/si_protein_attributes.py -> build/lib/shephard/interfaces 2022-08-13T23:31:03,698 copying shephard/interfaces/si_proteins.py -> build/lib/shephard/interfaces 2022-08-13T23:31:03,703 copying shephard/interfaces/si_tracks.py -> build/lib/shephard/interfaces 2022-08-13T23:31:03,709 creating build/lib/shephard/tools 2022-08-13T23:31:03,711 copying shephard/tools/__init__.py -> build/lib/shephard/tools 2022-08-13T23:31:03,714 copying shephard/tools/sequence_tools.py -> build/lib/shephard/tools 2022-08-13T23:31:03,718 copying shephard/tools/experimental.py -> build/lib/shephard/tools 2022-08-13T23:31:03,721 copying shephard/tools/domain_tools.py -> build/lib/shephard/tools 2022-08-13T23:31:03,726 copying shephard/tools/site_tools.py -> build/lib/shephard/tools 2022-08-13T23:31:03,729 copying shephard/tools/track_tools.py -> build/lib/shephard/tools 2022-08-13T23:31:03,732 running egg_info 2022-08-13T23:31:05,152 writing shephard.egg-info/PKG-INFO 2022-08-13T23:31:05,747 writing dependency_links to shephard.egg-info/dependency_links.txt 2022-08-13T23:31:08,705 writing requirements to shephard.egg-info/requires.txt 2022-08-13T23:31:09,298 writing top-level names to shephard.egg-info/top_level.txt 2022-08-13T23:31:09,424 reading manifest file 'shephard.egg-info/SOURCES.txt' 2022-08-13T23:31:09,446 reading manifest template 'MANIFEST.in' 2022-08-13T23:31:09,461 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2022-08-13T23:31:09,463 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2022-08-13T23:31:09,465 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-08-13T23:31:09,465 adding license file 'LICENSE' 2022-08-13T23:31:09,482 writing manifest file 'shephard.egg-info/SOURCES.txt' 2022-08-13T23:31:09,487 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-13T23:31:09,488 ############################ 2022-08-13T23:31:09,489 # Package would be ignored # 2022-08-13T23:31:09,489 ############################ 2022-08-13T23:31:09,489 Python recognizes 'shephard.data' as an importable package, however it is 2022-08-13T23:31:09,489 included in the distribution as "data". 2022-08-13T23:31:09,490 This behavior is likely to change in future versions of setuptools (and 2022-08-13T23:31:09,490 therefore is considered deprecated). 2022-08-13T23:31:09,491 Please make sure that 'shephard.data' is included as a package by using 2022-08-13T23:31:09,491 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-13T23:31:09,492 You can read more about "package discovery" and "data files" on setuptools 2022-08-13T23:31:09,492 documentation page. 2022-08-13T23:31:09,493 !! 2022-08-13T23:31:09,493 check.warn(importable) 2022-08-13T23:31:09,494 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-13T23:31:09,495 ############################ 2022-08-13T23:31:09,495 # Package would be ignored # 2022-08-13T23:31:09,495 ############################ 2022-08-13T23:31:09,496 Python recognizes 'shephard.data.test_data' as an importable package, however it is 2022-08-13T23:31:09,496 included in the distribution as "data". 2022-08-13T23:31:09,496 This behavior is likely to change in future versions of setuptools (and 2022-08-13T23:31:09,496 therefore is considered deprecated). 2022-08-13T23:31:09,497 Please make sure that 'shephard.data.test_data' is included as a package by using 2022-08-13T23:31:09,497 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-13T23:31:09,498 You can read more about "package discovery" and "data files" on setuptools 2022-08-13T23:31:09,498 documentation page. 2022-08-13T23:31:09,499 !! 2022-08-13T23:31:09,500 check.warn(importable) 2022-08-13T23:31:09,500 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-13T23:31:09,502 ############################ 2022-08-13T23:31:09,502 # Package would be ignored # 2022-08-13T23:31:09,503 ############################ 2022-08-13T23:31:09,503 Python recognizes 'shephard.tests.output_test' as an importable package, however it is 2022-08-13T23:31:09,503 included in the distribution as "data". 2022-08-13T23:31:09,504 This behavior is likely to change in future versions of setuptools (and 2022-08-13T23:31:09,504 therefore is considered deprecated). 2022-08-13T23:31:09,505 Please make sure that 'shephard.tests.output_test' is included as a package by using 2022-08-13T23:31:09,506 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-13T23:31:09,506 You can read more about "package discovery" and "data files" on setuptools 2022-08-13T23:31:09,507 documentation page. 2022-08-13T23:31:09,508 !! 2022-08-13T23:31:09,509 check.warn(importable) 2022-08-13T23:31:09,509 creating build/lib/shephard/data 2022-08-13T23:31:09,510 copying shephard/data/README.md -> build/lib/shephard/data 2022-08-13T23:31:09,510 copying shephard/data/look_and_say.dat -> build/lib/shephard/data 2022-08-13T23:31:09,511 creating build/lib/shephard/data/test_data 2022-08-13T23:31:09,511 copying shephard/data/test_data/TS1_domains_idr.tsv -> build/lib/shephard/data/test_data 2022-08-13T23:31:09,515 copying shephard/data/test_data/TS1_domains_idr_and_others.tsv -> build/lib/shephard/data/test_data 2022-08-13T23:31:09,519 copying shephard/data/test_data/TS1_domains_pscore.tsv -> build/lib/shephard/data/test_data 2022-08-13T23:31:09,523 copying shephard/data/test_data/TS1_protein_attributes.tsv -> build/lib/shephard/data/test_data 2022-08-13T23:31:09,527 copying shephard/data/test_data/TS1_sites.tsv -> build/lib/shephard/data/test_data 2022-08-13T23:31:09,531 copying shephard/data/test_data/TS1_tracks_pscore.tsv -> build/lib/shephard/data/test_data 2022-08-13T23:31:09,537 copying shephard/data/test_data/names.txt -> build/lib/shephard/data/test_data 2022-08-13T23:31:09,541 copying shephard/data/test_data/seqs.fasta -> build/lib/shephard/data/test_data 2022-08-13T23:31:09,545 copying shephard/data/test_data/testset_1.fasta -> build/lib/shephard/data/test_data 2022-08-13T23:31:09,550 copying shephard/data/test_data/testset_1.fasta.fai -> build/lib/shephard/data/test_data 2022-08-13T23:31:09,554 copying shephard/data/test_data/testset_1_ptms.tsv -> build/lib/shephard/data/test_data 2022-08-13T23:31:09,557 copying shephard/data/test_data/ts1_bonus_sites.tsv -> build/lib/shephard/data/test_data 2022-08-13T23:31:09,561 copying shephard/data/test_data/ts1_bonus_sites_bad.tsv -> build/lib/shephard/data/test_data 2022-08-13T23:31:09,564 copying shephard/data/test_data/ts1_bonus_sites_bad2.tsv -> build/lib/shephard/data/test_data 2022-08-13T23:31:09,568 copying shephard/data/test_data/tst.py -> build/lib/shephard/data/test_data 2022-08-13T23:31:09,571 copying shephard/tests/test_domain_tools.py~ -> build/lib/shephard/tests 2022-08-13T23:31:09,575 copying shephard/tests/test_scratchpad.ipynb -> build/lib/shephard/tests 2022-08-13T23:31:09,579 creating build/lib/shephard/tests/.ipynb_checkpoints 2022-08-13T23:31:09,580 copying shephard/tests/.ipynb_checkpoints/test_scratchpad-checkpoint.ipynb -> build/lib/shephard/tests/.ipynb_checkpoints 2022-08-13T23:31:09,584 creating build/lib/shephard/tests/output_test 2022-08-13T23:31:09,586 copying shephard/tests/output_test/all_symbols_test.tsv -> build/lib/shephard/tests/output_test 2022-08-13T23:31:09,590 copying shephard/tests/output_test/out_tracks.tsv -> build/lib/shephard/tests/output_test 2022-08-13T23:31:09,596 copying shephard/tests/output_test/readme.md -> build/lib/shephard/tests/output_test 2022-08-13T23:31:09,600 copying shephard/tests/output_test/shephard_track_phosres.tsv -> build/lib/shephard/tests/output_test 2022-08-13T23:31:09,603 copying shephard/tests/output_test/shephard_track_pscore.tsv -> build/lib/shephard/tests/output_test 2022-08-13T23:31:09,609 copying shephard/tests/output_test/track_phospho_track.tsv -> build/lib/shephard/tests/output_test 2022-08-13T23:31:09,613 copying shephard/tests/output_test/track_random_vals.tsv -> build/lib/shephard/tests/output_test 2022-08-13T23:31:09,627 UPDATING build/lib/shephard/_version.py 2022-08-13T23:31:09,629 set build/lib/shephard/_version.py to 'v0.1.8' 2022-08-13T23:31:10,336 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-08-13T23:31:10,337 setuptools.SetuptoolsDeprecationWarning, 2022-08-13T23:31:11,045 installing to build/bdist.linux-armv7l/wheel 2022-08-13T23:31:11,046 running install 2022-08-13T23:31:11,106 running install_lib 2022-08-13T23:31:11,818 creating build/bdist.linux-armv7l 2022-08-13T23:31:11,819 creating build/bdist.linux-armv7l/wheel 2022-08-13T23:31:11,822 creating build/bdist.linux-armv7l/wheel/shephard 2022-08-13T23:31:11,825 creating build/bdist.linux-armv7l/wheel/shephard/data 2022-08-13T23:31:11,828 creating build/bdist.linux-armv7l/wheel/shephard/data/test_data 2022-08-13T23:31:11,830 copying build/lib/shephard/data/test_data/ts1_bonus_sites_bad.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data 2022-08-13T23:31:11,833 copying build/lib/shephard/data/test_data/TS1_protein_attributes.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data 2022-08-13T23:31:11,836 copying build/lib/shephard/data/test_data/TS1_domains_idr_and_others.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data 2022-08-13T23:31:11,840 copying build/lib/shephard/data/test_data/ts1_bonus_sites_bad2.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data 2022-08-13T23:31:11,843 copying build/lib/shephard/data/test_data/TS1_tracks_pscore.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data 2022-08-13T23:31:11,848 copying build/lib/shephard/data/test_data/TS1_sites.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data 2022-08-13T23:31:11,853 copying build/lib/shephard/data/test_data/ts1_bonus_sites.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data 2022-08-13T23:31:11,856 copying build/lib/shephard/data/test_data/tst.py -> build/bdist.linux-armv7l/wheel/shephard/data/test_data 2022-08-13T23:31:11,859 copying build/lib/shephard/data/test_data/seqs.fasta -> build/bdist.linux-armv7l/wheel/shephard/data/test_data 2022-08-13T23:31:11,863 copying build/lib/shephard/data/test_data/names.txt -> build/bdist.linux-armv7l/wheel/shephard/data/test_data 2022-08-13T23:31:11,866 copying build/lib/shephard/data/test_data/testset_1_ptms.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data 2022-08-13T23:31:11,869 copying build/lib/shephard/data/test_data/testset_1.fasta -> build/bdist.linux-armv7l/wheel/shephard/data/test_data 2022-08-13T23:31:11,873 copying build/lib/shephard/data/test_data/TS1_domains_idr.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data 2022-08-13T23:31:11,876 copying build/lib/shephard/data/test_data/TS1_domains_pscore.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data 2022-08-13T23:31:11,879 copying build/lib/shephard/data/test_data/testset_1.fasta.fai -> build/bdist.linux-armv7l/wheel/shephard/data/test_data 2022-08-13T23:31:11,882 copying build/lib/shephard/data/look_and_say.dat -> build/bdist.linux-armv7l/wheel/shephard/data 2022-08-13T23:31:11,886 copying build/lib/shephard/data/README.md -> build/bdist.linux-armv7l/wheel/shephard/data 2022-08-13T23:31:11,889 copying build/lib/shephard/test_domains_sites.py -> build/bdist.linux-armv7l/wheel/shephard 2022-08-13T23:31:11,892 copying build/lib/shephard/__init__.py -> build/bdist.linux-armv7l/wheel/shephard 2022-08-13T23:31:11,896 creating build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,899 creating build/bdist.linux-armv7l/wheel/shephard/tests/output_test 2022-08-13T23:31:11,900 copying build/lib/shephard/tests/output_test/track_phospho_track.tsv -> build/bdist.linux-armv7l/wheel/shephard/tests/output_test 2022-08-13T23:31:11,904 copying build/lib/shephard/tests/output_test/out_tracks.tsv -> build/bdist.linux-armv7l/wheel/shephard/tests/output_test 2022-08-13T23:31:11,910 copying build/lib/shephard/tests/output_test/all_symbols_test.tsv -> build/bdist.linux-armv7l/wheel/shephard/tests/output_test 2022-08-13T23:31:11,913 copying build/lib/shephard/tests/output_test/shephard_track_pscore.tsv -> build/bdist.linux-armv7l/wheel/shephard/tests/output_test 2022-08-13T23:31:11,918 copying build/lib/shephard/tests/output_test/readme.md -> build/bdist.linux-armv7l/wheel/shephard/tests/output_test 2022-08-13T23:31:11,921 copying build/lib/shephard/tests/output_test/shephard_track_phosres.tsv -> build/bdist.linux-armv7l/wheel/shephard/tests/output_test 2022-08-13T23:31:11,925 copying build/lib/shephard/tests/output_test/track_random_vals.tsv -> build/bdist.linux-armv7l/wheel/shephard/tests/output_test 2022-08-13T23:31:11,928 copying build/lib/shephard/tests/test_add_remove_annotations.py -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,931 copying build/lib/shephard/tests/test_si_domains.py -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,934 copying build/lib/shephard/tests/test_logic.py -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,937 copying build/lib/shephard/tests/__init__.py -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,940 copying build/lib/shephard/tests/test_shephard.py -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,943 copying build/lib/shephard/tests/test_interfaces.py -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,946 copying build/lib/shephard/tests/test_domains.py -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,951 creating build/bdist.linux-armv7l/wheel/shephard/tests/.ipynb_checkpoints 2022-08-13T23:31:11,952 copying build/lib/shephard/tests/.ipynb_checkpoints/test_scratchpad-checkpoint.ipynb -> build/bdist.linux-armv7l/wheel/shephard/tests/.ipynb_checkpoints 2022-08-13T23:31:11,956 copying build/lib/shephard/tests/test_si_sites.py -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,959 copying build/lib/shephard/tests/test_scratchpad.ipynb -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,963 copying build/lib/shephard/tests/conftest.py -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,966 copying build/lib/shephard/tests/test_tracks.py -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,969 copying build/lib/shephard/tests/test_apis_fasta.py -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,973 copying build/lib/shephard/tests/example_test_function.py -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,976 copying build/lib/shephard/tests/test_sequence_tools.py -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,979 copying build/lib/shephard/tests/test_proteome.py -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,983 copying build/lib/shephard/tests/test_protein.py -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,987 copying build/lib/shephard/tests/test_sites.py -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,991 copying build/lib/shephard/tests/test_track_tools.py -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,994 copying build/lib/shephard/tests/test_domain_tools.py~ -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:11,997 copying build/lib/shephard/tests/test_domain_tools.py -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:12,000 copying build/lib/shephard/tests/test_si_tracks.py -> build/bdist.linux-armv7l/wheel/shephard/tests 2022-08-13T23:31:12,005 copying build/lib/shephard/site.py -> build/bdist.linux-armv7l/wheel/shephard 2022-08-13T23:31:12,009 copying build/lib/shephard/track.py -> build/bdist.linux-armv7l/wheel/shephard 2022-08-13T23:31:12,014 copying build/lib/shephard/exceptions.py -> build/bdist.linux-armv7l/wheel/shephard 2022-08-13T23:31:12,018 creating build/bdist.linux-armv7l/wheel/shephard/apis 2022-08-13T23:31:12,020 copying build/lib/shephard/apis/__init__.py -> build/bdist.linux-armv7l/wheel/shephard/apis 2022-08-13T23:31:12,023 copying build/lib/shephard/apis/uniprot.py -> build/bdist.linux-armv7l/wheel/shephard/apis 2022-08-13T23:31:12,027 copying build/lib/shephard/apis/fasta.py -> build/bdist.linux-armv7l/wheel/shephard/apis 2022-08-13T23:31:12,031 copying build/lib/shephard/general_utilities.py -> build/bdist.linux-armv7l/wheel/shephard 2022-08-13T23:31:12,035 copying build/lib/shephard/sequence_utilities.py -> build/bdist.linux-armv7l/wheel/shephard 2022-08-13T23:31:12,039 creating build/bdist.linux-armv7l/wheel/shephard/interfaces 2022-08-13T23:31:12,040 copying build/lib/shephard/interfaces/si_sites.py -> build/bdist.linux-armv7l/wheel/shephard/interfaces 2022-08-13T23:31:12,045 copying build/lib/shephard/interfaces/__init__.py -> build/bdist.linux-armv7l/wheel/shephard/interfaces 2022-08-13T23:31:12,048 copying build/lib/shephard/interfaces/interface_tools.py -> build/bdist.linux-armv7l/wheel/shephard/interfaces 2022-08-13T23:31:12,052 copying build/lib/shephard/interfaces/si_domains.py -> build/bdist.linux-armv7l/wheel/shephard/interfaces 2022-08-13T23:31:12,057 copying build/lib/shephard/interfaces/si_protein_attributes.py -> build/bdist.linux-armv7l/wheel/shephard/interfaces 2022-08-13T23:31:12,061 copying build/lib/shephard/interfaces/si_proteins.py -> build/bdist.linux-armv7l/wheel/shephard/interfaces 2022-08-13T23:31:12,065 copying build/lib/shephard/interfaces/si_tracks.py -> build/bdist.linux-armv7l/wheel/shephard/interfaces 2022-08-13T23:31:12,070 copying build/lib/shephard/proteome.py -> build/bdist.linux-armv7l/wheel/shephard 2022-08-13T23:31:12,076 copying build/lib/shephard/domain.py -> build/bdist.linux-armv7l/wheel/shephard 2022-08-13T23:31:12,082 creating build/bdist.linux-armv7l/wheel/shephard/tools 2022-08-13T23:31:12,083 copying build/lib/shephard/tools/__init__.py -> build/bdist.linux-armv7l/wheel/shephard/tools 2022-08-13T23:31:12,087 copying build/lib/shephard/tools/sequence_tools.py -> build/bdist.linux-armv7l/wheel/shephard/tools 2022-08-13T23:31:12,090 copying build/lib/shephard/tools/experimental.py -> build/bdist.linux-armv7l/wheel/shephard/tools 2022-08-13T23:31:12,093 copying build/lib/shephard/tools/domain_tools.py -> build/bdist.linux-armv7l/wheel/shephard/tools 2022-08-13T23:31:12,098 copying build/lib/shephard/tools/site_tools.py -> build/bdist.linux-armv7l/wheel/shephard/tools 2022-08-13T23:31:12,101 copying build/lib/shephard/tools/track_tools.py -> build/bdist.linux-armv7l/wheel/shephard/tools 2022-08-13T23:31:12,104 copying build/lib/shephard/protein.py -> build/bdist.linux-armv7l/wheel/shephard 2022-08-13T23:31:12,112 copying build/lib/shephard/_version.py -> build/bdist.linux-armv7l/wheel/shephard 2022-08-13T23:31:12,115 running install_egg_info 2022-08-13T23:31:12,833 Copying shephard.egg-info to build/bdist.linux-armv7l/wheel/shephard-0.1.8-py3.7.egg-info 2022-08-13T23:31:12,853 running install_scripts 2022-08-13T23:31:12,993 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-08-13T23:31:13,001 creating build/bdist.linux-armv7l/wheel/shephard-0.1.8.dist-info/WHEEL 2022-08-13T23:31:13,005 creating '/tmp/pip-wheel-d9x8rfp2/shephard-0.1.8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-08-13T23:31:13,010 adding 'shephard/__init__.py' 2022-08-13T23:31:13,012 adding 'shephard/_version.py' 2022-08-13T23:31:13,017 adding 'shephard/domain.py' 2022-08-13T23:31:13,020 adding 'shephard/exceptions.py' 2022-08-13T23:31:13,023 adding 'shephard/general_utilities.py' 2022-08-13T23:31:13,047 adding 'shephard/protein.py' 2022-08-13T23:31:13,061 adding 'shephard/proteome.py' 2022-08-13T23:31:13,064 adding 'shephard/sequence_utilities.py' 2022-08-13T23:31:13,069 adding 'shephard/site.py' 2022-08-13T23:31:13,072 adding 'shephard/test_domains_sites.py' 2022-08-13T23:31:13,076 adding 'shephard/track.py' 2022-08-13T23:31:13,080 adding 'shephard/apis/__init__.py' 2022-08-13T23:31:13,085 adding 'shephard/apis/fasta.py' 2022-08-13T23:31:13,089 adding 'shephard/apis/uniprot.py' 2022-08-13T23:31:13,092 adding 'shephard/data/README.md' 2022-08-13T23:31:13,094 adding 'shephard/data/look_and_say.dat' 2022-08-13T23:31:13,098 adding 'shephard/data/test_data/TS1_domains_idr.tsv' 2022-08-13T23:31:13,100 adding 'shephard/data/test_data/TS1_domains_idr_and_others.tsv' 2022-08-13T23:31:13,102 adding 'shephard/data/test_data/TS1_domains_pscore.tsv' 2022-08-13T23:31:13,104 adding 'shephard/data/test_data/TS1_protein_attributes.tsv' 2022-08-13T23:31:13,107 adding 'shephard/data/test_data/TS1_sites.tsv' 2022-08-13T23:31:13,129 adding 'shephard/data/test_data/TS1_tracks_pscore.tsv' 2022-08-13T23:31:13,131 adding 'shephard/data/test_data/names.txt' 2022-08-13T23:31:13,135 adding 'shephard/data/test_data/seqs.fasta' 2022-08-13T23:31:13,138 adding 'shephard/data/test_data/testset_1.fasta' 2022-08-13T23:31:13,140 adding 'shephard/data/test_data/testset_1.fasta.fai' 2022-08-13T23:31:13,142 adding 'shephard/data/test_data/testset_1_ptms.tsv' 2022-08-13T23:31:13,144 adding 'shephard/data/test_data/ts1_bonus_sites.tsv' 2022-08-13T23:31:13,147 adding 'shephard/data/test_data/ts1_bonus_sites_bad.tsv' 2022-08-13T23:31:13,149 adding 'shephard/data/test_data/ts1_bonus_sites_bad2.tsv' 2022-08-13T23:31:13,151 adding 'shephard/data/test_data/tst.py' 2022-08-13T23:31:13,154 adding 'shephard/interfaces/__init__.py' 2022-08-13T23:31:13,158 adding 'shephard/interfaces/interface_tools.py' 2022-08-13T23:31:13,165 adding 'shephard/interfaces/si_domains.py' 2022-08-13T23:31:13,170 adding 'shephard/interfaces/si_protein_attributes.py' 2022-08-13T23:31:13,175 adding 'shephard/interfaces/si_proteins.py' 2022-08-13T23:31:13,180 adding 'shephard/interfaces/si_sites.py' 2022-08-13T23:31:13,187 adding 'shephard/interfaces/si_tracks.py' 2022-08-13T23:31:13,192 adding 'shephard/tests/__init__.py' 2022-08-13T23:31:13,194 adding 'shephard/tests/conftest.py' 2022-08-13T23:31:13,197 adding 'shephard/tests/example_test_function.py' 2022-08-13T23:31:13,199 adding 'shephard/tests/test_add_remove_annotations.py' 2022-08-13T23:31:13,202 adding 'shephard/tests/test_apis_fasta.py' 2022-08-13T23:31:13,205 adding 'shephard/tests/test_domain_tools.py' 2022-08-13T23:31:13,207 adding 'shephard/tests/test_domain_tools.py~' 2022-08-13T23:31:13,210 adding 'shephard/tests/test_domains.py' 2022-08-13T23:31:13,213 adding 'shephard/tests/test_interfaces.py' 2022-08-13T23:31:13,215 adding 'shephard/tests/test_logic.py' 2022-08-13T23:31:13,219 adding 'shephard/tests/test_protein.py' 2022-08-13T23:31:13,222 adding 'shephard/tests/test_proteome.py' 2022-08-13T23:31:13,225 adding 'shephard/tests/test_scratchpad.ipynb' 2022-08-13T23:31:13,227 adding 'shephard/tests/test_sequence_tools.py' 2022-08-13T23:31:13,230 adding 'shephard/tests/test_shephard.py' 2022-08-13T23:31:13,232 adding 'shephard/tests/test_si_domains.py' 2022-08-13T23:31:13,235 adding 'shephard/tests/test_si_sites.py' 2022-08-13T23:31:13,238 adding 'shephard/tests/test_si_tracks.py' 2022-08-13T23:31:13,241 adding 'shephard/tests/test_sites.py' 2022-08-13T23:31:13,243 adding 'shephard/tests/test_track_tools.py' 2022-08-13T23:31:13,245 adding 'shephard/tests/test_tracks.py' 2022-08-13T23:31:13,249 adding 'shephard/tests/.ipynb_checkpoints/test_scratchpad-checkpoint.ipynb' 2022-08-13T23:31:13,252 adding 'shephard/tests/output_test/all_symbols_test.tsv' 2022-08-13T23:31:13,274 adding 'shephard/tests/output_test/out_tracks.tsv' 2022-08-13T23:31:13,277 adding 'shephard/tests/output_test/readme.md' 2022-08-13T23:31:13,279 adding 'shephard/tests/output_test/shephard_track_phosres.tsv' 2022-08-13T23:31:13,300 adding 'shephard/tests/output_test/shephard_track_pscore.tsv' 2022-08-13T23:31:13,304 adding 'shephard/tests/output_test/track_phospho_track.tsv' 2022-08-13T23:31:13,307 adding 'shephard/tests/output_test/track_random_vals.tsv' 2022-08-13T23:31:13,310 adding 'shephard/tools/__init__.py' 2022-08-13T23:31:13,317 adding 'shephard/tools/domain_tools.py' 2022-08-13T23:31:13,320 adding 'shephard/tools/experimental.py' 2022-08-13T23:31:13,323 adding 'shephard/tools/sequence_tools.py' 2022-08-13T23:31:13,326 adding 'shephard/tools/site_tools.py' 2022-08-13T23:31:13,329 adding 'shephard/tools/track_tools.py' 2022-08-13T23:31:13,334 adding 'shephard-0.1.8.dist-info/LICENSE' 2022-08-13T23:31:13,337 adding 'shephard-0.1.8.dist-info/METADATA' 2022-08-13T23:31:13,339 adding 'shephard-0.1.8.dist-info/WHEEL' 2022-08-13T23:31:13,340 adding 'shephard-0.1.8.dist-info/top_level.txt' 2022-08-13T23:31:13,343 adding 'shephard-0.1.8.dist-info/RECORD' 2022-08-13T23:31:13,352 removing build/bdist.linux-armv7l/wheel 2022-08-13T23:31:13,642 Building wheel for shephard (setup.py): finished with status 'done' 2022-08-13T23:31:13,654 Created wheel for shephard: filename=shephard-0.1.8-py3-none-any.whl size=167456 sha256=affda4c08aba9e71908aa718a3fdb9851faff0a49135550c7741cbeb0d804582 2022-08-13T23:31:13,656 Stored in directory: /tmp/pip-ephem-wheel-cache-ir4944il/wheels/26/53/07/a13a7a59a55085382e017e10889b5e4051f646a53b1cda5244 2022-08-13T23:31:13,684 Successfully built shephard 2022-08-13T23:31:13,705 Removed build tracker: '/tmp/pip-build-tracker-c13axf93'