2022-08-14T15:13:46,685 Created temporary directory: /tmp/pip-ephem-wheel-cache-9yttuwi_
2022-08-14T15:13:46,691 Created temporary directory: /tmp/pip-build-tracker-68j75g3_
2022-08-14T15:13:46,691 Initialized build tracking at /tmp/pip-build-tracker-68j75g3_
2022-08-14T15:13:46,692 Created build tracker: /tmp/pip-build-tracker-68j75g3_
2022-08-14T15:13:46,692 Entered build tracker: /tmp/pip-build-tracker-68j75g3_
2022-08-14T15:13:46,693 Created temporary directory: /tmp/pip-wheel-0p6qsrnz
2022-08-14T15:13:46,760 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-08-14T15:13:46,769 2 location(s) to search for versions of nmdc-runtime:
2022-08-14T15:13:46,769 * https://pypi.org/simple/nmdc-runtime/
2022-08-14T15:13:46,769 * https://www.piwheels.org/simple/nmdc-runtime/
2022-08-14T15:13:46,770 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/
2022-08-14T15:13:46,771 Getting page https://pypi.org/simple/nmdc-runtime/
2022-08-14T15:13:46,775 Found index url https://pypi.org/simple
2022-08-14T15:13:46,892   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=de0204efa483209fe109a5fbdccdf7508c92214aeb6494c5d300f0f62ccb3e7d (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8)
2022-08-14T15:13:46,894   Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz#sha256=2d7d92622b44452986ee3e55eab45288395457d0628e8ad5c325d7f9193a5f76 (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0
2022-08-14T15:13:46,894   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl#sha256=c41cc0aa7fba811600b33cf37f1412e3174847d3c44b1b69341e44d2f0fd9544 (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8)
2022-08-14T15:13:46,896   Found link https://files.pythonhosted.org/packages/31/0d/353b462ef1bde0cdb4f4d36b943b19f4844070641e2ad25cf4b39e10154d/nmdc_runtime-0.1.1.tar.gz#sha256=c27d69926316237e12c4015144bf8c95af69e5fe94bc2646fda515785c948f85 (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.1
2022-08-14T15:13:46,897   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/c9/32/65aa3b8e7dae9e5c896fa1fcaf559fb1784d824759c78b4c89682c681275/nmdc_runtime-0.1.3-py3-none-any.whl#sha256=d088e177c0437474461213948c651ab6823a2a44139663f776952af6ded16c69 (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8)
2022-08-14T15:13:46,898   Found link https://files.pythonhosted.org/packages/f5/f9/e540bd39ae5b2f834f09138219ba5c9beab7797821f063b93e2f0cb48c30/nmdc_runtime-0.1.3.tar.gz#sha256=4af28ab4130deb20792c4c6060877125cd49016cd38394633507a514484800e4 (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.3
2022-08-14T15:13:46,899   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/f4/3b90e1ea7442d196974acf301cef0e2b867f811bb288b9d39cf9c75c9af0/nmdc_runtime-0.1.5-py3-none-any.whl#sha256=4cf0da7b5b170662a1432624e5382e9743885ba4806e30004d67b8d85c3ef569 (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8)
2022-08-14T15:13:46,899   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/44/e7/dbd9b95d667293a0c7623f51f920d3e4eec16fc97c449668591ac2e404c0/nmdc_runtime-0.1.6-py3-none-any.whl#sha256=62cd7cd6675a26a7086595aff1c2b1c1af38f55504dab9ebac22fd2fe66c93e1 (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8)
2022-08-14T15:13:46,900   Found link https://files.pythonhosted.org/packages/82/26/5ed0f7ec2108a87e7f3689f6d8daa6ff3aca90fdb10ede7b65f8c6b46fa3/nmdc_runtime-0.1.6.tar.gz#sha256=fa31dc2e4f24a3a88f9521fc41bbe9bf9bf029588fbc2e5d025f00004b5b3aec (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.6
2022-08-14T15:13:46,901 Fetching project page and analyzing links: https://www.piwheels.org/simple/nmdc-runtime/
2022-08-14T15:13:46,902 Getting page https://www.piwheels.org/simple/nmdc-runtime/
2022-08-14T15:13:46,904 Found index url https://www.piwheels.org/simple
2022-08-14T15:13:47,113   Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.3-py3-none-any.whl#sha256=67c7cf263830bd4c4c62dff28d0073f938ecb1055f487f43a15f935ef54e461d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8)
2022-08-14T15:13:47,114   Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.1-py3-none-any.whl#sha256=f960697437ecf9bf8309e94fbb729ae1440468a7de29b264a61fb6de39368762 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8)
2022-08-14T15:13:47,115   Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8)
2022-08-14T15:13:47,115 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/
2022-08-14T15:13:47,116 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/
2022-08-14T15:13:47,161 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates
2022-08-14T15:13:47,203 Collecting nmdc-runtime==0.1.6
2022-08-14T15:13:47,208   Created temporary directory: /tmp/pip-unpack-cq7x70_j
2022-08-14T15:13:49,976   Downloading nmdc_runtime-0.1.6.tar.gz (63.6 MB)
2022-08-14T15:14:14,004   Added nmdc-runtime==0.1.6 from https://files.pythonhosted.org/packages/82/26/5ed0f7ec2108a87e7f3689f6d8daa6ff3aca90fdb10ede7b65f8c6b46fa3/nmdc_runtime-0.1.6.tar.gz#sha256=fa31dc2e4f24a3a88f9521fc41bbe9bf9bf029588fbc2e5d025f00004b5b3aec to build tracker '/tmp/pip-build-tracker-68j75g3_'
2022-08-14T15:14:14,008   Running setup.py (path:/tmp/pip-wheel-0p6qsrnz/nmdc-runtime_c922f08746cd4bb6a67af1751d2a3c98/setup.py) egg_info for package nmdc-runtime
2022-08-14T15:14:14,010   Created temporary directory: /tmp/pip-pip-egg-info-4q0j3bvq
2022-08-14T15:14:14,010   Preparing metadata (setup.py): started
2022-08-14T15:14:14,012   Running command python setup.py egg_info
2022-08-14T15:14:16,829   /usr/local/lib/python3.9/dist-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
2022-08-14T15:14:16,831     warnings.warn(
2022-08-14T15:14:42,696   running egg_info
2022-08-14T15:14:42,701   creating /tmp/pip-pip-egg-info-4q0j3bvq/nmdc_runtime.egg-info
2022-08-14T15:14:43,357   writing /tmp/pip-pip-egg-info-4q0j3bvq/nmdc_runtime.egg-info/PKG-INFO
2022-08-14T15:14:43,932   writing dependency_links to /tmp/pip-pip-egg-info-4q0j3bvq/nmdc_runtime.egg-info/dependency_links.txt
2022-08-14T15:14:45,627   writing entry points to /tmp/pip-pip-egg-info-4q0j3bvq/nmdc_runtime.egg-info/entry_points.txt
2022-08-14T15:14:46,759   writing requirements to /tmp/pip-pip-egg-info-4q0j3bvq/nmdc_runtime.egg-info/requires.txt
2022-08-14T15:14:47,328   writing top-level names to /tmp/pip-pip-egg-info-4q0j3bvq/nmdc_runtime.egg-info/top_level.txt
2022-08-14T15:14:47,331   writing manifest file '/tmp/pip-pip-egg-info-4q0j3bvq/nmdc_runtime.egg-info/SOURCES.txt'
2022-08-14T15:14:48,112   package init file 'nmdc_runtime/templates/__init__.py' not found (or not a regular file)
2022-08-14T15:14:48,131   package init file 'nmdc_runtime/api/v1/models/__init__.py' not found (or not a regular file)
2022-08-14T15:14:48,137   package init file 'nmdc_runtime/infrastructure/database/impl/__init__.py' not found (or not a regular file)
2022-08-14T15:14:48,413   listing git files failed - pretending there aren't any
2022-08-14T15:14:48,437   reading manifest file '/tmp/pip-pip-egg-info-4q0j3bvq/nmdc_runtime.egg-info/SOURCES.txt'
2022-08-14T15:14:48,442   adding license file 'LICENSE'
2022-08-14T15:14:48,457   writing manifest file '/tmp/pip-pip-egg-info-4q0j3bvq/nmdc_runtime.egg-info/SOURCES.txt'
2022-08-14T15:14:48,709   Preparing metadata (setup.py): finished with status 'done'
2022-08-14T15:14:48,721   Source in /tmp/pip-wheel-0p6qsrnz/nmdc-runtime_c922f08746cd4bb6a67af1751d2a3c98 has version 0.1.6, which satisfies requirement nmdc-runtime==0.1.6 from https://files.pythonhosted.org/packages/82/26/5ed0f7ec2108a87e7f3689f6d8daa6ff3aca90fdb10ede7b65f8c6b46fa3/nmdc_runtime-0.1.6.tar.gz#sha256=fa31dc2e4f24a3a88f9521fc41bbe9bf9bf029588fbc2e5d025f00004b5b3aec
2022-08-14T15:14:48,723   Removed nmdc-runtime==0.1.6 from https://files.pythonhosted.org/packages/82/26/5ed0f7ec2108a87e7f3689f6d8daa6ff3aca90fdb10ede7b65f8c6b46fa3/nmdc_runtime-0.1.6.tar.gz#sha256=fa31dc2e4f24a3a88f9521fc41bbe9bf9bf029588fbc2e5d025f00004b5b3aec from build tracker '/tmp/pip-build-tracker-68j75g3_'
2022-08-14T15:14:48,738 Created temporary directory: /tmp/pip-unpack-dt88wz2t
2022-08-14T15:14:48,739 Building wheels for collected packages: nmdc-runtime
2022-08-14T15:14:48,749   Created temporary directory: /tmp/pip-wheel-ilc9exr9
2022-08-14T15:14:48,750   Building wheel for nmdc-runtime (setup.py): started
2022-08-14T15:14:48,751   Destination directory: /tmp/pip-wheel-ilc9exr9
2022-08-14T15:14:48,752   Running command python setup.py bdist_wheel
2022-08-14T15:14:51,520   /usr/local/lib/python3.9/dist-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
2022-08-14T15:14:51,522     warnings.warn(
2022-08-14T15:14:58,981   running bdist_wheel
2022-08-14T15:15:00,427   running build
2022-08-14T15:15:00,428   running build_py
2022-08-14T15:15:01,156   creating build
2022-08-14T15:15:01,156   creating build/lib
2022-08-14T15:15:01,158   creating build/lib/nmdc_runtime
2022-08-14T15:15:01,159   creating build/lib/nmdc_runtime/domain
2022-08-14T15:15:01,162   copying nmdc_runtime/domain/__init__.py -> build/lib/nmdc_runtime/domain
2022-08-14T15:15:01,167   creating build/lib/nmdc_runtime/lib
2022-08-14T15:15:01,169   copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib
2022-08-14T15:15:01,175   copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib
2022-08-14T15:15:01,181   copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib
2022-08-14T15:15:01,185   copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib
2022-08-14T15:15:01,190   copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib
2022-08-14T15:15:01,193   copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib
2022-08-14T15:15:01,198   creating build/lib/nmdc_runtime/api
2022-08-14T15:15:01,199   copying nmdc_runtime/api/__init__.py -> build/lib/nmdc_runtime/api
2022-08-14T15:15:01,203   copying nmdc_runtime/api/main.py -> build/lib/nmdc_runtime/api
2022-08-14T15:15:01,209   creating build/lib/nmdc_runtime/infrastructure
2022-08-14T15:15:01,210   copying nmdc_runtime/infrastructure/__init__.py -> build/lib/nmdc_runtime/infrastructure
2022-08-14T15:15:01,215   creating build/lib/nmdc_runtime/core
2022-08-14T15:15:01,216   copying nmdc_runtime/core/__init__.py -> build/lib/nmdc_runtime/core
2022-08-14T15:15:01,221   creating build/lib/nmdc_runtime/client
2022-08-14T15:15:01,222   copying nmdc_runtime/client/__init__.py -> build/lib/nmdc_runtime/client
2022-08-14T15:15:01,227   creating build/lib/nmdc_runtime/site
2022-08-14T15:15:01,229   copying nmdc_runtime/site/resources.py -> build/lib/nmdc_runtime/site
2022-08-14T15:15:01,233   copying nmdc_runtime/site/util.py -> build/lib/nmdc_runtime/site
2022-08-14T15:15:01,237   copying nmdc_runtime/site/graphs.py -> build/lib/nmdc_runtime/site
2022-08-14T15:15:01,241   copying nmdc_runtime/site/repository.py -> build/lib/nmdc_runtime/site
2022-08-14T15:15:01,246   copying nmdc_runtime/site/ops.py -> build/lib/nmdc_runtime/site
2022-08-14T15:15:01,251   copying nmdc_runtime/site/__init__.py -> build/lib/nmdc_runtime/site
2022-08-14T15:15:01,253   package init file 'nmdc_runtime/templates/__init__.py' not found (or not a regular file)
2022-08-14T15:15:01,256   creating build/lib/nmdc_runtime/domain/users
2022-08-14T15:15:01,258   copying nmdc_runtime/domain/users/queriesInterface.py -> build/lib/nmdc_runtime/domain/users
2022-08-14T15:15:01,261   copying nmdc_runtime/domain/users/userService.py -> build/lib/nmdc_runtime/domain/users
2022-08-14T15:15:01,264   copying nmdc_runtime/domain/users/userSchema.py -> build/lib/nmdc_runtime/domain/users
2022-08-14T15:15:01,267   copying nmdc_runtime/domain/users/__init__.py -> build/lib/nmdc_runtime/domain/users
2022-08-14T15:15:01,273   creating build/lib/nmdc_runtime/api/endpoints
2022-08-14T15:15:01,275   copying nmdc_runtime/api/endpoints/search.py -> build/lib/nmdc_runtime/api/endpoints
2022-08-14T15:15:01,278   copying nmdc_runtime/api/endpoints/runs.py -> build/lib/nmdc_runtime/api/endpoints
2022-08-14T15:15:01,281   copying nmdc_runtime/api/endpoints/objects.py -> build/lib/nmdc_runtime/api/endpoints
2022-08-14T15:15:01,285   copying nmdc_runtime/api/endpoints/users.py -> build/lib/nmdc_runtime/api/endpoints
2022-08-14T15:15:01,289   copying nmdc_runtime/api/endpoints/nmdcschema.py -> build/lib/nmdc_runtime/api/endpoints
2022-08-14T15:15:01,292   copying nmdc_runtime/api/endpoints/queries.py -> build/lib/nmdc_runtime/api/endpoints
2022-08-14T15:15:01,296   copying nmdc_runtime/api/endpoints/object_types.py -> build/lib/nmdc_runtime/api/endpoints
2022-08-14T15:15:01,299   copying nmdc_runtime/api/endpoints/util.py -> build/lib/nmdc_runtime/api/endpoints
2022-08-14T15:15:01,304   copying nmdc_runtime/api/endpoints/sites.py -> build/lib/nmdc_runtime/api/endpoints
2022-08-14T15:15:01,308   copying nmdc_runtime/api/endpoints/triggers.py -> build/lib/nmdc_runtime/api/endpoints
2022-08-14T15:15:01,311   copying nmdc_runtime/api/endpoints/find.py -> build/lib/nmdc_runtime/api/endpoints
2022-08-14T15:15:01,315   copying nmdc_runtime/api/endpoints/metadata.py -> build/lib/nmdc_runtime/api/endpoints
2022-08-14T15:15:01,319   copying nmdc_runtime/api/endpoints/workflows.py -> build/lib/nmdc_runtime/api/endpoints
2022-08-14T15:15:01,322   copying nmdc_runtime/api/endpoints/ids.py -> build/lib/nmdc_runtime/api/endpoints
2022-08-14T15:15:01,326   copying nmdc_runtime/api/endpoints/__init__.py -> build/lib/nmdc_runtime/api/endpoints
2022-08-14T15:15:01,329   copying nmdc_runtime/api/endpoints/operations.py -> build/lib/nmdc_runtime/api/endpoints
2022-08-14T15:15:01,332   copying nmdc_runtime/api/endpoints/capabilities.py -> build/lib/nmdc_runtime/api/endpoints
2022-08-14T15:15:01,336   copying nmdc_runtime/api/endpoints/jobs.py -> build/lib/nmdc_runtime/api/endpoints
2022-08-14T15:15:01,340   creating build/lib/nmdc_runtime/api/db
2022-08-14T15:15:01,342   copying nmdc_runtime/api/db/mongo.py -> build/lib/nmdc_runtime/api/db
2022-08-14T15:15:01,346   copying nmdc_runtime/api/db/terminus.py -> build/lib/nmdc_runtime/api/db
2022-08-14T15:15:01,349   copying nmdc_runtime/api/db/s3.py -> build/lib/nmdc_runtime/api/db
2022-08-14T15:15:01,352   copying nmdc_runtime/api/db/__init__.py -> build/lib/nmdc_runtime/api/db
2022-08-14T15:15:01,358   creating build/lib/nmdc_runtime/api/models
2022-08-14T15:15:01,359   copying nmdc_runtime/api/models/query.py -> build/lib/nmdc_runtime/api/models
2022-08-14T15:15:01,363   copying nmdc_runtime/api/models/object_type.py -> build/lib/nmdc_runtime/api/models
2022-08-14T15:15:01,366   copying nmdc_runtime/api/models/capability.py -> build/lib/nmdc_runtime/api/models
2022-08-14T15:15:01,369   copying nmdc_runtime/api/models/job.py -> build/lib/nmdc_runtime/api/models
2022-08-14T15:15:01,373   copying nmdc_runtime/api/models/nmdc_schema.py -> build/lib/nmdc_runtime/api/models
2022-08-14T15:15:01,377   copying nmdc_runtime/api/models/util.py -> build/lib/nmdc_runtime/api/models
2022-08-14T15:15:01,380   copying nmdc_runtime/api/models/workflow.py -> build/lib/nmdc_runtime/api/models
2022-08-14T15:15:01,383   copying nmdc_runtime/api/models/trigger.py -> build/lib/nmdc_runtime/api/models
2022-08-14T15:15:01,387   copying nmdc_runtime/api/models/site.py -> build/lib/nmdc_runtime/api/models
2022-08-14T15:15:01,390   copying nmdc_runtime/api/models/metadata.py -> build/lib/nmdc_runtime/api/models
2022-08-14T15:15:01,393   copying nmdc_runtime/api/models/run.py -> build/lib/nmdc_runtime/api/models
2022-08-14T15:15:01,397   copying nmdc_runtime/api/models/id.py -> build/lib/nmdc_runtime/api/models
2022-08-14T15:15:01,400   copying nmdc_runtime/api/models/operation.py -> build/lib/nmdc_runtime/api/models
2022-08-14T15:15:01,403   copying nmdc_runtime/api/models/user.py -> build/lib/nmdc_runtime/api/models
2022-08-14T15:15:01,407   copying nmdc_runtime/api/models/__init__.py -> build/lib/nmdc_runtime/api/models
2022-08-14T15:15:01,409   copying nmdc_runtime/api/models/object.py -> build/lib/nmdc_runtime/api/models
2022-08-14T15:15:01,414   creating build/lib/nmdc_runtime/api/core
2022-08-14T15:15:01,415   copying nmdc_runtime/api/core/auth.py -> build/lib/nmdc_runtime/api/core
2022-08-14T15:15:01,420   copying nmdc_runtime/api/core/idgen.py -> build/lib/nmdc_runtime/api/core
2022-08-14T15:15:01,424   copying nmdc_runtime/api/core/util.py -> build/lib/nmdc_runtime/api/core
2022-08-14T15:15:01,427   copying nmdc_runtime/api/core/metadata.py -> build/lib/nmdc_runtime/api/core
2022-08-14T15:15:01,432   copying nmdc_runtime/api/core/__init__.py -> build/lib/nmdc_runtime/api/core
2022-08-14T15:15:01,435   creating build/lib/nmdc_runtime/api/v1
2022-08-14T15:15:01,437   copying nmdc_runtime/api/v1/users.py -> build/lib/nmdc_runtime/api/v1
2022-08-14T15:15:01,441   copying nmdc_runtime/api/v1/router.py -> build/lib/nmdc_runtime/api/v1
2022-08-14T15:15:01,444   copying nmdc_runtime/api/v1/__init__.py -> build/lib/nmdc_runtime/api/v1
2022-08-14T15:15:01,449   creating build/lib/nmdc_runtime/api/boot
2022-08-14T15:15:01,450   copying nmdc_runtime/api/boot/object_types.py -> build/lib/nmdc_runtime/api/boot
2022-08-14T15:15:01,454   copying nmdc_runtime/api/boot/triggers.py -> build/lib/nmdc_runtime/api/boot
2022-08-14T15:15:01,458   copying nmdc_runtime/api/boot/workflows.py -> build/lib/nmdc_runtime/api/boot
2022-08-14T15:15:01,461   copying nmdc_runtime/api/boot/__init__.py -> build/lib/nmdc_runtime/api/boot
2022-08-14T15:15:01,463   copying nmdc_runtime/api/boot/capabilities.py -> build/lib/nmdc_runtime/api/boot
2022-08-14T15:15:01,466   package init file 'nmdc_runtime/api/v1/models/__init__.py' not found (or not a regular file)
2022-08-14T15:15:01,467   creating build/lib/nmdc_runtime/api/v1/models
2022-08-14T15:15:01,469   copying nmdc_runtime/api/v1/models/users.py -> build/lib/nmdc_runtime/api/v1/models
2022-08-14T15:15:01,474   creating build/lib/nmdc_runtime/infrastructure/database
2022-08-14T15:15:01,475   copying nmdc_runtime/infrastructure/database/db.py -> build/lib/nmdc_runtime/infrastructure/database
2022-08-14T15:15:01,479   copying nmdc_runtime/infrastructure/database/__init__.py -> build/lib/nmdc_runtime/infrastructure/database
2022-08-14T15:15:01,482   creating build/lib/nmdc_runtime/infrastructure/database/models
2022-08-14T15:15:01,484   copying nmdc_runtime/infrastructure/database/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/models
2022-08-14T15:15:01,488   copying nmdc_runtime/infrastructure/database/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/models
2022-08-14T15:15:01,490   package init file 'nmdc_runtime/infrastructure/database/impl/__init__.py' not found (or not a regular file)
2022-08-14T15:15:01,493   creating build/lib/nmdc_runtime/infrastructure/database/impl
2022-08-14T15:15:01,493   creating build/lib/nmdc_runtime/infrastructure/database/impl/mongo
2022-08-14T15:15:01,495   copying nmdc_runtime/infrastructure/database/impl/mongo/db.py -> build/lib/nmdc_runtime/infrastructure/database/impl/mongo
2022-08-14T15:15:01,499   copying nmdc_runtime/infrastructure/database/impl/mongo/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/impl/mongo
2022-08-14T15:15:01,503   creating build/lib/nmdc_runtime/infrastructure/database/impl/mongo/models
2022-08-14T15:15:01,504   copying nmdc_runtime/infrastructure/database/impl/mongo/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/impl/mongo/models
2022-08-14T15:15:01,508   copying nmdc_runtime/infrastructure/database/impl/mongo/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/impl/mongo/models
2022-08-14T15:15:01,511   creating build/lib/nmdc_runtime/core/db
2022-08-14T15:15:01,513   copying nmdc_runtime/core/db/Database.py -> build/lib/nmdc_runtime/core/db
2022-08-14T15:15:01,516   copying nmdc_runtime/core/db/__init__.py -> build/lib/nmdc_runtime/core/db
2022-08-14T15:15:01,520   creating build/lib/nmdc_runtime/core/exceptions
2022-08-14T15:15:01,522   copying nmdc_runtime/core/exceptions/base.py -> build/lib/nmdc_runtime/core/exceptions
2022-08-14T15:15:01,525   copying nmdc_runtime/core/exceptions/token.py -> build/lib/nmdc_runtime/core/exceptions
2022-08-14T15:15:01,528   copying nmdc_runtime/core/exceptions/__init__.py -> build/lib/nmdc_runtime/core/exceptions
2022-08-14T15:15:01,533   creating build/lib/nmdc_runtime/site/validation
2022-08-14T15:15:01,535   copying nmdc_runtime/site/validation/emsl.py -> build/lib/nmdc_runtime/site/validation
2022-08-14T15:15:01,538   copying nmdc_runtime/site/validation/util.py -> build/lib/nmdc_runtime/site/validation
2022-08-14T15:15:01,542   copying nmdc_runtime/site/validation/jgi.py -> build/lib/nmdc_runtime/site/validation
2022-08-14T15:15:01,545   copying nmdc_runtime/site/validation/gold.py -> build/lib/nmdc_runtime/site/validation
2022-08-14T15:15:01,548   copying nmdc_runtime/site/validation/__init__.py -> build/lib/nmdc_runtime/site/validation
2022-08-14T15:15:01,552   creating build/lib/nmdc_runtime/site/drsobjects
2022-08-14T15:15:01,554   copying nmdc_runtime/site/drsobjects/ingest.py -> build/lib/nmdc_runtime/site/drsobjects
2022-08-14T15:15:01,557   copying nmdc_runtime/site/drsobjects/registration.py -> build/lib/nmdc_runtime/site/drsobjects
2022-08-14T15:15:01,561   copying nmdc_runtime/site/drsobjects/__init__.py -> build/lib/nmdc_runtime/site/drsobjects
2022-08-14T15:15:01,565   creating build/lib/nmdc_runtime/site/backup
2022-08-14T15:15:01,567   copying nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/lib/nmdc_runtime/site/backup
2022-08-14T15:15:01,570   copying nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/lib/nmdc_runtime/site/backup
2022-08-14T15:15:01,574   copying nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/lib/nmdc_runtime/site/backup
2022-08-14T15:15:01,577   copying nmdc_runtime/site/backup/__init__.py -> build/lib/nmdc_runtime/site/backup
2022-08-14T15:15:01,581   creating build/lib/nmdc_runtime/site/export
2022-08-14T15:15:01,583   copying nmdc_runtime/site/export/study_metadata.py -> build/lib/nmdc_runtime/site/export
2022-08-14T15:15:01,587   copying nmdc_runtime/site/export/__init__.py -> build/lib/nmdc_runtime/site/export
2022-08-14T15:15:01,591   creating build/lib/nmdc_runtime/site/translation
2022-08-14T15:15:01,593   copying nmdc_runtime/site/translation/emsl.py -> build/lib/nmdc_runtime/site/translation
2022-08-14T15:15:01,597   copying nmdc_runtime/site/translation/util.py -> build/lib/nmdc_runtime/site/translation
2022-08-14T15:15:01,601   copying nmdc_runtime/site/translation/jgi.py -> build/lib/nmdc_runtime/site/translation
2022-08-14T15:15:01,604   copying nmdc_runtime/site/translation/gold.py -> build/lib/nmdc_runtime/site/translation
2022-08-14T15:15:01,607   copying nmdc_runtime/site/translation/__init__.py -> build/lib/nmdc_runtime/site/translation
2022-08-14T15:15:01,611   creating build/lib/nmdc_runtime/site/terminusdb
2022-08-14T15:15:01,613   copying nmdc_runtime/site/terminusdb/ingest.py -> build/lib/nmdc_runtime/site/terminusdb
2022-08-14T15:15:01,617   copying nmdc_runtime/site/terminusdb/generate.py -> build/lib/nmdc_runtime/site/terminusdb
2022-08-14T15:15:01,622   copying nmdc_runtime/site/terminusdb/schema.py -> build/lib/nmdc_runtime/site/terminusdb
2022-08-14T15:15:01,631   copying nmdc_runtime/site/terminusdb/__init__.py -> build/lib/nmdc_runtime/site/terminusdb
2022-08-14T15:15:02,348   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-08-14T15:15:02,348     warnings.warn(
2022-08-14T15:15:03,027   installing to build/bdist.linux-armv7l/wheel
2022-08-14T15:15:03,027   running install
2022-08-14T15:15:03,089   running install_lib
2022-08-14T15:15:03,760   creating build/bdist.linux-armv7l
2022-08-14T15:15:03,760   creating build/bdist.linux-armv7l/wheel
2022-08-14T15:15:03,764   creating build/bdist.linux-armv7l/wheel/nmdc_runtime
2022-08-14T15:15:03,767   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain
2022-08-14T15:15:03,769   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users
2022-08-14T15:15:03,771   copying build/lib/nmdc_runtime/domain/users/queriesInterface.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users
2022-08-14T15:15:03,775   copying build/lib/nmdc_runtime/domain/users/userService.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users
2022-08-14T15:15:03,779   copying build/lib/nmdc_runtime/domain/users/userSchema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users
2022-08-14T15:15:03,782   copying build/lib/nmdc_runtime/domain/users/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users
2022-08-14T15:15:03,785   copying build/lib/nmdc_runtime/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain
2022-08-14T15:15:03,789   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2022-08-14T15:15:03,791   copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2022-08-14T15:15:03,798   copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2022-08-14T15:15:03,804   copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2022-08-14T15:15:03,808   copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2022-08-14T15:15:03,813   copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2022-08-14T15:15:03,817   copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2022-08-14T15:15:03,822   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api
2022-08-14T15:15:03,826   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2022-08-14T15:15:03,828   copying build/lib/nmdc_runtime/api/endpoints/search.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2022-08-14T15:15:03,832   copying build/lib/nmdc_runtime/api/endpoints/runs.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2022-08-14T15:15:03,835   copying build/lib/nmdc_runtime/api/endpoints/objects.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2022-08-14T15:15:03,840   copying build/lib/nmdc_runtime/api/endpoints/users.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2022-08-14T15:15:03,843   copying build/lib/nmdc_runtime/api/endpoints/nmdcschema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2022-08-14T15:15:03,847   copying build/lib/nmdc_runtime/api/endpoints/queries.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2022-08-14T15:15:03,851   copying build/lib/nmdc_runtime/api/endpoints/object_types.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2022-08-14T15:15:03,855   copying build/lib/nmdc_runtime/api/endpoints/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2022-08-14T15:15:03,860   copying build/lib/nmdc_runtime/api/endpoints/sites.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2022-08-14T15:15:03,864   copying build/lib/nmdc_runtime/api/endpoints/triggers.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2022-08-14T15:15:03,868   copying build/lib/nmdc_runtime/api/endpoints/find.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2022-08-14T15:15:03,872   copying build/lib/nmdc_runtime/api/endpoints/metadata.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2022-08-14T15:15:03,877   copying build/lib/nmdc_runtime/api/endpoints/workflows.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2022-08-14T15:15:03,880   copying build/lib/nmdc_runtime/api/endpoints/ids.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2022-08-14T15:15:03,884   copying build/lib/nmdc_runtime/api/endpoints/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2022-08-14T15:15:03,887   copying build/lib/nmdc_runtime/api/endpoints/operations.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2022-08-14T15:15:03,891   copying build/lib/nmdc_runtime/api/endpoints/capabilities.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2022-08-14T15:15:03,894   copying build/lib/nmdc_runtime/api/endpoints/jobs.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/endpoints
2022-08-14T15:15:03,899   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api/db
2022-08-14T15:15:03,901   copying build/lib/nmdc_runtime/api/db/mongo.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/db
2022-08-14T15:15:03,905   copying build/lib/nmdc_runtime/api/db/terminus.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/db
2022-08-14T15:15:03,908   copying build/lib/nmdc_runtime/api/db/s3.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/db
2022-08-14T15:15:03,911   copying build/lib/nmdc_runtime/api/db/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/db
2022-08-14T15:15:03,915   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2022-08-14T15:15:03,916   copying build/lib/nmdc_runtime/api/models/query.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2022-08-14T15:15:03,920   copying build/lib/nmdc_runtime/api/models/object_type.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2022-08-14T15:15:03,923   copying build/lib/nmdc_runtime/api/models/capability.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2022-08-14T15:15:03,926   copying build/lib/nmdc_runtime/api/models/job.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2022-08-14T15:15:03,929   copying build/lib/nmdc_runtime/api/models/nmdc_schema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2022-08-14T15:15:03,933   copying build/lib/nmdc_runtime/api/models/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2022-08-14T15:15:03,936   copying build/lib/nmdc_runtime/api/models/workflow.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2022-08-14T15:15:03,940   copying build/lib/nmdc_runtime/api/models/trigger.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2022-08-14T15:15:03,943   copying build/lib/nmdc_runtime/api/models/site.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2022-08-14T15:15:03,946   copying build/lib/nmdc_runtime/api/models/metadata.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2022-08-14T15:15:03,949   copying build/lib/nmdc_runtime/api/models/run.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2022-08-14T15:15:03,953   copying build/lib/nmdc_runtime/api/models/id.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2022-08-14T15:15:03,957   copying build/lib/nmdc_runtime/api/models/operation.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2022-08-14T15:15:03,960   copying build/lib/nmdc_runtime/api/models/user.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2022-08-14T15:15:03,963   copying build/lib/nmdc_runtime/api/models/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2022-08-14T15:15:03,965   copying build/lib/nmdc_runtime/api/models/object.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/models
2022-08-14T15:15:03,970   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api/core
2022-08-14T15:15:03,971   copying build/lib/nmdc_runtime/api/core/auth.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/core
2022-08-14T15:15:03,975   copying build/lib/nmdc_runtime/api/core/idgen.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/core
2022-08-14T15:15:03,980   copying build/lib/nmdc_runtime/api/core/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/core
2022-08-14T15:15:03,983   copying build/lib/nmdc_runtime/api/core/metadata.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/core
2022-08-14T15:15:03,989   copying build/lib/nmdc_runtime/api/core/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/core
2022-08-14T15:15:03,993   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api/v1
2022-08-14T15:15:03,994   copying build/lib/nmdc_runtime/api/v1/users.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/v1
2022-08-14T15:15:03,998   copying build/lib/nmdc_runtime/api/v1/router.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/v1
2022-08-14T15:15:04,002   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api/v1/models
2022-08-14T15:15:04,003   copying build/lib/nmdc_runtime/api/v1/models/users.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/v1/models
2022-08-14T15:15:04,007   copying build/lib/nmdc_runtime/api/v1/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/v1
2022-08-14T15:15:04,011   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/api/boot
2022-08-14T15:15:04,012   copying build/lib/nmdc_runtime/api/boot/object_types.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/boot
2022-08-14T15:15:04,016   copying build/lib/nmdc_runtime/api/boot/triggers.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/boot
2022-08-14T15:15:04,019   copying build/lib/nmdc_runtime/api/boot/workflows.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/boot
2022-08-14T15:15:04,023   copying build/lib/nmdc_runtime/api/boot/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/boot
2022-08-14T15:15:04,027   copying build/lib/nmdc_runtime/api/boot/capabilities.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api/boot
2022-08-14T15:15:04,031   copying build/lib/nmdc_runtime/api/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api
2022-08-14T15:15:04,034   copying build/lib/nmdc_runtime/api/main.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/api
2022-08-14T15:15:04,039   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure
2022-08-14T15:15:04,041   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database
2022-08-14T15:15:04,043   copying build/lib/nmdc_runtime/infrastructure/database/db.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database
2022-08-14T15:15:04,048   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models
2022-08-14T15:15:04,049   copying build/lib/nmdc_runtime/infrastructure/database/models/user.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models
2022-08-14T15:15:04,053   copying build/lib/nmdc_runtime/infrastructure/database/models/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models
2022-08-14T15:15:04,057   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/impl
2022-08-14T15:15:04,059   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/impl/mongo
2022-08-14T15:15:04,061   copying build/lib/nmdc_runtime/infrastructure/database/impl/mongo/db.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/impl/mongo
2022-08-14T15:15:04,066   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/impl/mongo/models
2022-08-14T15:15:04,068   copying build/lib/nmdc_runtime/infrastructure/database/impl/mongo/models/user.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/impl/mongo/models
2022-08-14T15:15:04,072   copying build/lib/nmdc_runtime/infrastructure/database/impl/mongo/models/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/impl/mongo/models
2022-08-14T15:15:04,075   copying build/lib/nmdc_runtime/infrastructure/database/impl/mongo/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/impl/mongo
2022-08-14T15:15:04,079   copying build/lib/nmdc_runtime/infrastructure/database/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database
2022-08-14T15:15:04,081   copying build/lib/nmdc_runtime/infrastructure/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure
2022-08-14T15:15:04,085   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core
2022-08-14T15:15:04,088   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db
2022-08-14T15:15:04,090   copying build/lib/nmdc_runtime/core/db/Database.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db
2022-08-14T15:15:04,093   copying build/lib/nmdc_runtime/core/db/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db
2022-08-14T15:15:04,098   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions
2022-08-14T15:15:04,099   copying build/lib/nmdc_runtime/core/exceptions/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions
2022-08-14T15:15:04,103   copying build/lib/nmdc_runtime/core/exceptions/token.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions
2022-08-14T15:15:04,106   copying build/lib/nmdc_runtime/core/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions
2022-08-14T15:15:04,110   copying build/lib/nmdc_runtime/core/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core
2022-08-14T15:15:04,113   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/client
2022-08-14T15:15:04,115   copying build/lib/nmdc_runtime/client/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/client
2022-08-14T15:15:04,119   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site
2022-08-14T15:15:04,121   copying build/lib/nmdc_runtime/site/resources.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site
2022-08-14T15:15:04,127   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation
2022-08-14T15:15:04,128   copying build/lib/nmdc_runtime/site/validation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation
2022-08-14T15:15:04,132   copying build/lib/nmdc_runtime/site/validation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation
2022-08-14T15:15:04,135   copying build/lib/nmdc_runtime/site/validation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation
2022-08-14T15:15:04,139   copying build/lib/nmdc_runtime/site/validation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation
2022-08-14T15:15:04,142   copying build/lib/nmdc_runtime/site/validation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation
2022-08-14T15:15:04,146   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects
2022-08-14T15:15:04,148   copying build/lib/nmdc_runtime/site/drsobjects/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects
2022-08-14T15:15:04,152   copying build/lib/nmdc_runtime/site/drsobjects/registration.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects
2022-08-14T15:15:04,156   copying build/lib/nmdc_runtime/site/drsobjects/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects
2022-08-14T15:15:04,159   copying build/lib/nmdc_runtime/site/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site
2022-08-14T15:15:04,163   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup
2022-08-14T15:15:04,165   copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup
2022-08-14T15:15:04,168   copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup
2022-08-14T15:15:04,172   copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup
2022-08-14T15:15:04,175   copying build/lib/nmdc_runtime/site/backup/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup
2022-08-14T15:15:04,179   copying build/lib/nmdc_runtime/site/graphs.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site
2022-08-14T15:15:04,183   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export
2022-08-14T15:15:04,185   copying build/lib/nmdc_runtime/site/export/study_metadata.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export
2022-08-14T15:15:04,189   copying build/lib/nmdc_runtime/site/export/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export
2022-08-14T15:15:04,192   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation
2022-08-14T15:15:04,194   copying build/lib/nmdc_runtime/site/translation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation
2022-08-14T15:15:04,198   copying build/lib/nmdc_runtime/site/translation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation
2022-08-14T15:15:04,202   copying build/lib/nmdc_runtime/site/translation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation
2022-08-14T15:15:04,205   copying build/lib/nmdc_runtime/site/translation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation
2022-08-14T15:15:04,209   copying build/lib/nmdc_runtime/site/translation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation
2022-08-14T15:15:04,212   copying build/lib/nmdc_runtime/site/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site
2022-08-14T15:15:04,216   copying build/lib/nmdc_runtime/site/ops.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site
2022-08-14T15:15:04,222   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb
2022-08-14T15:15:04,223   copying build/lib/nmdc_runtime/site/terminusdb/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb
2022-08-14T15:15:04,227   copying build/lib/nmdc_runtime/site/terminusdb/generate.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb
2022-08-14T15:15:04,231   copying build/lib/nmdc_runtime/site/terminusdb/schema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb
2022-08-14T15:15:04,239   copying build/lib/nmdc_runtime/site/terminusdb/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb
2022-08-14T15:15:04,242   copying build/lib/nmdc_runtime/site/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site
2022-08-14T15:15:04,244   running install_egg_info
2022-08-14T15:15:05,588   running egg_info
2022-08-14T15:15:06,255   writing nmdc_runtime.egg-info/PKG-INFO
2022-08-14T15:15:06,832   writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt
2022-08-14T15:15:08,551   writing entry points to nmdc_runtime.egg-info/entry_points.txt
2022-08-14T15:15:09,698   writing requirements to nmdc_runtime.egg-info/requires.txt
2022-08-14T15:15:10,272   writing top-level names to nmdc_runtime.egg-info/top_level.txt
2022-08-14T15:15:10,525   listing git files failed - pretending there aren't any
2022-08-14T15:15:10,545   reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt'
2022-08-14T15:15:10,662   adding license file 'LICENSE'
2022-08-14T15:15:10,708   writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt'
2022-08-14T15:15:10,713   Copying nmdc_runtime.egg-info to build/bdist.linux-armv7l/wheel/nmdc_runtime-0.1.6-py3.9.egg-info
2022-08-14T15:15:10,743   running install_scripts
2022-08-14T15:15:11,036   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-08-14T15:15:11,047   creating build/bdist.linux-armv7l/wheel/nmdc_runtime-0.1.6.dist-info/WHEEL
2022-08-14T15:15:11,052   creating '/tmp/pip-wheel-ilc9exr9/nmdc_runtime-0.1.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-08-14T15:15:11,059   adding 'nmdc_runtime/api/__init__.py'
2022-08-14T15:15:11,065   adding 'nmdc_runtime/api/main.py'
2022-08-14T15:15:11,069   adding 'nmdc_runtime/api/boot/__init__.py'
2022-08-14T15:15:11,072   adding 'nmdc_runtime/api/boot/capabilities.py'
2022-08-14T15:15:11,075   adding 'nmdc_runtime/api/boot/object_types.py'
2022-08-14T15:15:11,079   adding 'nmdc_runtime/api/boot/triggers.py'
2022-08-14T15:15:11,082   adding 'nmdc_runtime/api/boot/workflows.py'
2022-08-14T15:15:11,087   adding 'nmdc_runtime/api/core/__init__.py'
2022-08-14T15:15:11,090   adding 'nmdc_runtime/api/core/auth.py'
2022-08-14T15:15:11,094   adding 'nmdc_runtime/api/core/idgen.py'
2022-08-14T15:15:11,103   adding 'nmdc_runtime/api/core/metadata.py'
2022-08-14T15:15:11,107   adding 'nmdc_runtime/api/core/util.py'
2022-08-14T15:15:11,111   adding 'nmdc_runtime/api/db/__init__.py'
2022-08-14T15:15:11,114   adding 'nmdc_runtime/api/db/mongo.py'
2022-08-14T15:15:11,117   adding 'nmdc_runtime/api/db/s3.py'
2022-08-14T15:15:11,120   adding 'nmdc_runtime/api/db/terminus.py'
2022-08-14T15:15:11,124   adding 'nmdc_runtime/api/endpoints/__init__.py'
2022-08-14T15:15:11,127   adding 'nmdc_runtime/api/endpoints/capabilities.py'
2022-08-14T15:15:11,131   adding 'nmdc_runtime/api/endpoints/find.py'
2022-08-14T15:15:11,135   adding 'nmdc_runtime/api/endpoints/ids.py'
2022-08-14T15:15:11,138   adding 'nmdc_runtime/api/endpoints/jobs.py'
2022-08-14T15:15:11,143   adding 'nmdc_runtime/api/endpoints/metadata.py'
2022-08-14T15:15:11,146   adding 'nmdc_runtime/api/endpoints/nmdcschema.py'
2022-08-14T15:15:11,149   adding 'nmdc_runtime/api/endpoints/object_types.py'
2022-08-14T15:15:11,153   adding 'nmdc_runtime/api/endpoints/objects.py'
2022-08-14T15:15:11,157   adding 'nmdc_runtime/api/endpoints/operations.py'
2022-08-14T15:15:11,160   adding 'nmdc_runtime/api/endpoints/queries.py'
2022-08-14T15:15:11,164   adding 'nmdc_runtime/api/endpoints/runs.py'
2022-08-14T15:15:11,167   adding 'nmdc_runtime/api/endpoints/search.py'
2022-08-14T15:15:11,171   adding 'nmdc_runtime/api/endpoints/sites.py'
2022-08-14T15:15:11,174   adding 'nmdc_runtime/api/endpoints/triggers.py'
2022-08-14T15:15:11,177   adding 'nmdc_runtime/api/endpoints/users.py'
2022-08-14T15:15:11,184   adding 'nmdc_runtime/api/endpoints/util.py'
2022-08-14T15:15:11,188   adding 'nmdc_runtime/api/endpoints/workflows.py'
2022-08-14T15:15:11,192   adding 'nmdc_runtime/api/models/__init__.py'
2022-08-14T15:15:11,194   adding 'nmdc_runtime/api/models/capability.py'
2022-08-14T15:15:11,197   adding 'nmdc_runtime/api/models/id.py'
2022-08-14T15:15:11,199   adding 'nmdc_runtime/api/models/job.py'
2022-08-14T15:15:11,202   adding 'nmdc_runtime/api/models/metadata.py'
2022-08-14T15:15:11,205   adding 'nmdc_runtime/api/models/nmdc_schema.py'
2022-08-14T15:15:11,208   adding 'nmdc_runtime/api/models/object.py'
2022-08-14T15:15:11,210   adding 'nmdc_runtime/api/models/object_type.py'
2022-08-14T15:15:11,212   adding 'nmdc_runtime/api/models/operation.py'
2022-08-14T15:15:11,215   adding 'nmdc_runtime/api/models/query.py'
2022-08-14T15:15:11,218   adding 'nmdc_runtime/api/models/run.py'
2022-08-14T15:15:11,221   adding 'nmdc_runtime/api/models/site.py'
2022-08-14T15:15:11,223   adding 'nmdc_runtime/api/models/trigger.py'
2022-08-14T15:15:11,226   adding 'nmdc_runtime/api/models/user.py'
2022-08-14T15:15:11,228   adding 'nmdc_runtime/api/models/util.py'
2022-08-14T15:15:11,231   adding 'nmdc_runtime/api/models/workflow.py'
2022-08-14T15:15:11,235   adding 'nmdc_runtime/api/v1/__init__.py'
2022-08-14T15:15:11,237   adding 'nmdc_runtime/api/v1/router.py'
2022-08-14T15:15:11,240   adding 'nmdc_runtime/api/v1/users.py'
2022-08-14T15:15:11,243   adding 'nmdc_runtime/api/v1/models/users.py'
2022-08-14T15:15:11,246   adding 'nmdc_runtime/client/__init__.py'
2022-08-14T15:15:11,249   adding 'nmdc_runtime/core/__init__.py'
2022-08-14T15:15:11,252   adding 'nmdc_runtime/core/db/Database.py'
2022-08-14T15:15:11,254   adding 'nmdc_runtime/core/db/__init__.py'
2022-08-14T15:15:11,258   adding 'nmdc_runtime/core/exceptions/__init__.py'
2022-08-14T15:15:11,260   adding 'nmdc_runtime/core/exceptions/base.py'
2022-08-14T15:15:11,262   adding 'nmdc_runtime/core/exceptions/token.py'
2022-08-14T15:15:11,265   adding 'nmdc_runtime/domain/__init__.py'
2022-08-14T15:15:11,268   adding 'nmdc_runtime/domain/users/__init__.py'
2022-08-14T15:15:11,271   adding 'nmdc_runtime/domain/users/queriesInterface.py'
2022-08-14T15:15:11,273   adding 'nmdc_runtime/domain/users/userSchema.py'
2022-08-14T15:15:11,275   adding 'nmdc_runtime/domain/users/userService.py'
2022-08-14T15:15:11,279   adding 'nmdc_runtime/infrastructure/__init__.py'
2022-08-14T15:15:11,283   adding 'nmdc_runtime/infrastructure/database/__init__.py'
2022-08-14T15:15:11,285   adding 'nmdc_runtime/infrastructure/database/db.py'
2022-08-14T15:15:11,289   adding 'nmdc_runtime/infrastructure/database/impl/mongo/__init__.py'
2022-08-14T15:15:11,291   adding 'nmdc_runtime/infrastructure/database/impl/mongo/db.py'
2022-08-14T15:15:11,294   adding 'nmdc_runtime/infrastructure/database/impl/mongo/models/__init__.py'
2022-08-14T15:15:11,296   adding 'nmdc_runtime/infrastructure/database/impl/mongo/models/user.py'
2022-08-14T15:15:11,300   adding 'nmdc_runtime/infrastructure/database/models/__init__.py'
2022-08-14T15:15:11,302   adding 'nmdc_runtime/infrastructure/database/models/user.py'
2022-08-14T15:15:11,305   adding 'nmdc_runtime/lib/__init__.py'
2022-08-14T15:15:11,307   adding 'nmdc_runtime/lib/extract_nmdc_data.py'
2022-08-14T15:15:11,310   adding 'nmdc_runtime/lib/load_nmdc_data.py'
2022-08-14T15:15:11,317   adding 'nmdc_runtime/lib/nmdc_dataframes.py'
2022-08-14T15:15:11,322   adding 'nmdc_runtime/lib/nmdc_etl_class.py'
2022-08-14T15:15:11,334   adding 'nmdc_runtime/lib/transform_nmdc_data.py'
2022-08-14T15:15:11,338   adding 'nmdc_runtime/site/__init__.py'
2022-08-14T15:15:11,341   adding 'nmdc_runtime/site/graphs.py'
2022-08-14T15:15:11,346   adding 'nmdc_runtime/site/ops.py'
2022-08-14T15:15:11,351   adding 'nmdc_runtime/site/repository.py'
2022-08-14T15:15:11,355   adding 'nmdc_runtime/site/resources.py'
2022-08-14T15:15:11,358   adding 'nmdc_runtime/site/util.py'
2022-08-14T15:15:11,361   adding 'nmdc_runtime/site/backup/__init__.py'
2022-08-14T15:15:11,363   adding 'nmdc_runtime/site/backup/nmdcdb_mongodump.py'
2022-08-14T15:15:11,366   adding 'nmdc_runtime/site/backup/nmdcdb_mongoexport.py'
2022-08-14T15:15:11,368   adding 'nmdc_runtime/site/backup/nmdcdb_mongoimport.py'
2022-08-14T15:15:11,372   adding 'nmdc_runtime/site/drsobjects/__init__.py'
2022-08-14T15:15:11,374   adding 'nmdc_runtime/site/drsobjects/ingest.py'
2022-08-14T15:15:11,377   adding 'nmdc_runtime/site/drsobjects/registration.py'
2022-08-14T15:15:11,380   adding 'nmdc_runtime/site/export/__init__.py'
2022-08-14T15:15:11,383   adding 'nmdc_runtime/site/export/study_metadata.py'
2022-08-14T15:15:11,386   adding 'nmdc_runtime/site/terminusdb/__init__.py'
2022-08-14T15:15:11,389   adding 'nmdc_runtime/site/terminusdb/generate.py'
2022-08-14T15:15:11,392   adding 'nmdc_runtime/site/terminusdb/ingest.py'
2022-08-14T15:15:11,411   adding 'nmdc_runtime/site/terminusdb/schema.py'
2022-08-14T15:15:11,416   adding 'nmdc_runtime/site/translation/__init__.py'
2022-08-14T15:15:11,418   adding 'nmdc_runtime/site/translation/emsl.py'
2022-08-14T15:15:11,421   adding 'nmdc_runtime/site/translation/gold.py'
2022-08-14T15:15:11,423   adding 'nmdc_runtime/site/translation/jgi.py'
2022-08-14T15:15:11,426   adding 'nmdc_runtime/site/translation/util.py'
2022-08-14T15:15:11,429   adding 'nmdc_runtime/site/validation/__init__.py'
2022-08-14T15:15:11,431   adding 'nmdc_runtime/site/validation/emsl.py'
2022-08-14T15:15:11,433   adding 'nmdc_runtime/site/validation/gold.py'
2022-08-14T15:15:11,435   adding 'nmdc_runtime/site/validation/jgi.py'
2022-08-14T15:15:11,438   adding 'nmdc_runtime/site/validation/util.py'
2022-08-14T15:15:11,442   adding 'nmdc_runtime-0.1.6.dist-info/LICENSE'
2022-08-14T15:15:11,445   adding 'nmdc_runtime-0.1.6.dist-info/METADATA'
2022-08-14T15:15:11,447   adding 'nmdc_runtime-0.1.6.dist-info/WHEEL'
2022-08-14T15:15:11,449   adding 'nmdc_runtime-0.1.6.dist-info/entry_points.txt'
2022-08-14T15:15:11,451   adding 'nmdc_runtime-0.1.6.dist-info/top_level.txt'
2022-08-14T15:15:11,456   adding 'nmdc_runtime-0.1.6.dist-info/RECORD'
2022-08-14T15:15:11,467   removing build/bdist.linux-armv7l/wheel
2022-08-14T15:15:11,823   Building wheel for nmdc-runtime (setup.py): finished with status 'done'
2022-08-14T15:15:11,835   Created wheel for nmdc-runtime: filename=nmdc_runtime-0.1.6-py3-none-any.whl size=145240 sha256=5a8149e8f3e41c8fd242361d7a5918eb005bfd8e8c5639321d4ecbfe917a1292
2022-08-14T15:15:11,837   Stored in directory: /tmp/pip-ephem-wheel-cache-9yttuwi_/wheels/a1/38/16/b50b5032307978a501177cf1fd770986619b6a4884c08f9fc5
2022-08-14T15:15:11,869 Successfully built nmdc-runtime
2022-08-14T15:15:11,886 Removed build tracker: '/tmp/pip-build-tracker-68j75g3_'