2022-08-16T06:50:21,709 Created temporary directory: /tmp/pip-ephem-wheel-cache-89fj8s4g 2022-08-16T06:50:21,714 Created temporary directory: /tmp/pip-build-tracker-vevt0030 2022-08-16T06:50:21,715 Initialized build tracking at /tmp/pip-build-tracker-vevt0030 2022-08-16T06:50:21,716 Created build tracker: /tmp/pip-build-tracker-vevt0030 2022-08-16T06:50:21,716 Entered build tracker: /tmp/pip-build-tracker-vevt0030 2022-08-16T06:50:21,717 Created temporary directory: /tmp/pip-wheel-4uaxweph 2022-08-16T06:50:21,785 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-16T06:50:21,793 2 location(s) to search for versions of altocumulus: 2022-08-16T06:50:21,793 * https://pypi.org/simple/altocumulus/ 2022-08-16T06:50:21,793 * https://www.piwheels.org/simple/altocumulus/ 2022-08-16T06:50:21,794 Fetching project page and analyzing links: https://pypi.org/simple/altocumulus/ 2022-08-16T06:50:21,795 Getting page https://pypi.org/simple/altocumulus/ 2022-08-16T06:50:21,799 Found index url https://pypi.org/simple 2022-08-16T06:50:21,950 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/09/5d/0b244b044b38f8ec9cfa845a3cba04c573a67d7ccf1c6a8c04baea364ec0/altocumulus-1.0.0-py3-none-any.whl#sha256=2de884a46f3f34f241e49bb5e0f50cdcdbd0bafa7b61d706d87820c51c447732 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-16T06:50:21,952 Found link https://files.pythonhosted.org/packages/9b/52/23d85d485cf003959d038964e833c5780e57d9bee631d6e59929eff8a653/altocumulus-1.0.0.tar.gz#sha256=7d2fc66ae1beed14e86cc53bad4e3a42d2d51fa74abbeeb99dbf3ff648e91e74 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 1.0.0 2022-08-16T06:50:21,953 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/ab/14/e585532cdd2355e8552f02661b96cbc6303cb14e5a8b2ed84b35c4b26c11/altocumulus-1.1.0-py3-none-any.whl#sha256=3d42d814adacda078456bfeef866aa672d6cccf7de5c0942530038f62d438625 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-16T06:50:21,954 Found link https://files.pythonhosted.org/packages/cd/d3/a0f9430e9329c46e1116825e04b36595cbedea5e6ea4890e89ba916becf7/altocumulus-1.1.0.tar.gz#sha256=970f0a663f7c87999b686558c59330a4765e4377994696fc6abe1db09eb29035 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 1.1.0 2022-08-16T06:50:21,955 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/5b/58/5cd013ad4d060074d66bdd12dd816040fac29abf103656c6f0f8f21f4101/altocumulus-1.1.1-py3-none-any.whl#sha256=70624d10ada9a6a32e52987a2d8a18e58cc4f90f9c93b6ec2461cf8ff26d6bdf (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-16T06:50:21,956 Found link https://files.pythonhosted.org/packages/4d/f2/8eecb7a86aae1dc170c70db1f0fcdcd668871e0f13d54d544062e66c5c83/altocumulus-1.1.1.tar.gz#sha256=89bfde864f3a564b0275c8cfea136060d038eed729807e21fd3d4247883a118a (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 1.1.1 2022-08-16T06:50:21,957 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/b0/2b/1114389da7745bbaa0cc5a9a64fb86ce44c16176cdd1e4b9f7a851014d74/altocumulus-2.0.0-py3-none-any.whl#sha256=b34e183a927cffd32471a8bc34426be59d4338a376211d7c2c5ead283ae5c66b (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-16T06:50:21,958 Found link https://files.pythonhosted.org/packages/a6/83/bcd960f5d957669bb8c217d9c9996ecd3204ef87c138b570b81d403b4132/altocumulus-2.0.0.tar.gz#sha256=7b0af9eb5f2edbc7ca880207d6e3f6559c96c33fe7c7abaef9a517b9de3e04c0 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.0 2022-08-16T06:50:21,959 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/ef/54/b9e37bb8875663ebb97aca019b6756912139181e60c0d9926ee91962750a/altocumulus-2.0.1-py3-none-any.whl#sha256=504dea5ef674559636981f1ac21ded3c592440f6afffbe5ec3b3eb7378709eb9 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-16T06:50:21,960 Found link https://files.pythonhosted.org/packages/f7/46/dfa9702222dbc6c41f8876f53b705a2ccf5f56f9056fc441c972559dd97c/altocumulus-2.0.1.tar.gz#sha256=11e9776135462a2b82da731ff2880fd6db08f153f4b6cac71bf99fb15e80086e (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.1 2022-08-16T06:50:21,961 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/16/a1/4e83b0a14b19dad7ad67102ff2452156d630f22a3db6193284dd6ff617b8/altocumulus-2.0.2-py3-none-any.whl#sha256=7713e1aafdbf82656442ce1f625af112f620e88a1ea7a133e4d2b7f29989ce47 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-16T06:50:21,962 Found link https://files.pythonhosted.org/packages/15/96/a7ea3de17b028a343e7f98ffb5015584f32577496836dff06a75aac7a4d2/altocumulus-2.0.2.tar.gz#sha256=22f2d62d9722c04768af5d3ccba6260c28a647daa60cadbded3d578f8638a481 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.2 2022-08-16T06:50:21,963 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/05/f3/a9bea6f2f7ee2c792be761a2d924a5fbfcc337c187a0f36efa13743cd91c/altocumulus-2.0.3rc2-py3-none-any.whl#sha256=594e2f499c9b0737c5214df4ec13a1ed993bbdc5802f9aa7683de0d3fc4d860a (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-16T06:50:21,964 Found link https://files.pythonhosted.org/packages/79/86/d13df014d4aa35f67200217164c4c431d1882fc611cad36e36f192cd65da/altocumulus-2.0.3rc2.tar.gz#sha256=d17c4680a2206f67fab99881671b0db4e3ca9a24c7a10a9469efc5179940c688 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.3rc2 2022-08-16T06:50:21,965 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/f7/0a/e8c65b16a72488df427e3e4a672b711fa37fe03864a37ea6f28154d62af2/altocumulus-2.0.3-py3-none-any.whl#sha256=88000e07b14f58c14c089fe90124affa866d75de1c677d26fed6f92d9860a37b (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-16T06:50:21,966 Found link https://files.pythonhosted.org/packages/f1/a4/8967cf2efee181f840262d97502b50fec6daa3f64e006a7da71bd2b98f32/altocumulus-2.0.3.tar.gz#sha256=3adca8b76996dfa4c8ec5675f403c10d0276a28650a4198c8bc8998313595970 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3), version: 2.0.3 2022-08-16T06:50:21,967 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/42/1c/84d3abed1f49954500d8d3c1a4967bb77535ec2071e5c8ab678394dc5bad/altocumulus-2.1.0-py3-none-any.whl#sha256=77f8a90f688ed65299e995a91a7ead7a1dbbe62a59b178da1c48e6c769244b54 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8) 2022-08-16T06:50:21,968 Found link https://files.pythonhosted.org/packages/40/b8/ccbd0bc3dd767591f3a103b59467df99d2a04b1a29892a4d4573059dc71c/altocumulus-2.1.0.tar.gz#sha256=6d86d52e0d3ac4bf72c2d92ef8ede6bc25f6119352b6fdea25b0f271c4937196 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8), version: 2.1.0 2022-08-16T06:50:21,969 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/f0/1c/e789a37c124c225327a16f07aeb8cb1df3ad911133d275de7c6a5b1c94f8/altocumulus-2.1.1-py3-none-any.whl#sha256=04c8c6e27de89eec825fa3e3c57c6ee3817d347c3f6d43ed979b3a31d543da20 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8) 2022-08-16T06:50:21,970 Found link https://files.pythonhosted.org/packages/43/5d/7b88e06a5c19f092f479cec18a74f0ba114135ff4786c30f088fdf9e83dc/altocumulus-2.1.1.tar.gz#sha256=682da29dbe2bb89e801eb61eb947ae76d9e884ab5d15939f366333fcb68c01f1 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8), version: 2.1.1 2022-08-16T06:50:21,970 Skipping link: No binaries permitted for altocumulus: https://files.pythonhosted.org/packages/35/79/c554ad491b52e431cead07387e5a8c4d338b46d8c30889b1e21a5ad30a9f/altocumulus-2.1.2-py3-none-any.whl#sha256=d96ca2a2645b939e4dd1fee629386092d758f1a1c7ad931e826a63101014767a (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8) 2022-08-16T06:50:21,972 Found link https://files.pythonhosted.org/packages/3f/96/17813b8697094a3afca3a000ae8c55eb10d91def820a5201c28043c0b931/altocumulus-2.1.2.tar.gz#sha256=c2725e3e50ae255befb6e4512654e3c3ac224a6061d34a1999d29cebbcde3b06 (from https://pypi.org/simple/altocumulus/) (requires-python:>= 3.8), version: 2.1.2 2022-08-16T06:50:21,973 Fetching project page and analyzing links: https://www.piwheels.org/simple/altocumulus/ 2022-08-16T06:50:21,973 Getting page https://www.piwheels.org/simple/altocumulus/ 2022-08-16T06:50:21,975 Found index url https://www.piwheels.org/simple 2022-08-16T06:50:22,203 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.1.1-py3-none-any.whl#sha256=fe48bca28a77907e9b690d7fd0116393c6d9ee0a892c5538d7f5747111ecf0e2 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3.8) 2022-08-16T06:50:22,204 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.1.0-py3-none-any.whl#sha256=c9ebb6759ad8b9adbbe22c9beefd065e8d1243842068eef76fc57cbfce15d005 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3.8) 2022-08-16T06:50:22,205 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.3-py3-none-any.whl#sha256=46f961cfb6d73de6a94b374526fd174bb2c74d158a42a80845c233d21fa30b44 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-16T06:50:22,205 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.3rc2-py3-none-any.whl#sha256=fd5ad8267f381ce8e009870ce1cab5e8c3380d6aa2f639e9a9d203f308eb24b2 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-16T06:50:22,205 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.2-py3-none-any.whl#sha256=9b84ef41234cb17b0f5191b223fc30fcda025c111e328390b7859982c4290d16 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-16T06:50:22,206 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.1-py3-none-any.whl#sha256=d57fb443288d95954c54ee58dd5acd0ddbf5a04f46f193014e8e0644c9987eb8 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-16T06:50:22,206 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-2.0.0-py3-none-any.whl#sha256=91ca330ce1605c7e3e28b071db20d5ba04a4efe913b11e3fb652a52a7cc2cdab (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-16T06:50:22,207 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-1.1.1-py3-none-any.whl#sha256=86749f39b1a75e769a544863a18b6fb10700c76da20ab7283556741adf596f8c (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-16T06:50:22,207 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-1.1.0-py3-none-any.whl#sha256=3d42d814adacda078456bfeef866aa672d6cccf7de5c0942530038f62d438625 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-16T06:50:22,208 Skipping link: No binaries permitted for altocumulus: https://www.piwheels.org/simple/altocumulus/altocumulus-1.0.0-py3-none-any.whl#sha256=2de884a46f3f34f241e49bb5e0f50cdcdbd0bafa7b61d706d87820c51c447732 (from https://www.piwheels.org/simple/altocumulus/) (requires-python:>= 3) 2022-08-16T06:50:22,208 Skipping link: not a file: https://www.piwheels.org/simple/altocumulus/ 2022-08-16T06:50:22,209 Skipping link: not a file: https://pypi.org/simple/altocumulus/ 2022-08-16T06:50:22,256 Given no hashes to check 1 links for project 'altocumulus': discarding no candidates 2022-08-16T06:50:22,298 Collecting altocumulus==2.1.2 2022-08-16T06:50:22,302 Created temporary directory: /tmp/pip-unpack-o16c4v6y 2022-08-16T06:50:22,820 Downloading altocumulus-2.1.2.tar.gz (35 kB) 2022-08-16T06:50:23,117 Added altocumulus==2.1.2 from https://files.pythonhosted.org/packages/3f/96/17813b8697094a3afca3a000ae8c55eb10d91def820a5201c28043c0b931/altocumulus-2.1.2.tar.gz#sha256=c2725e3e50ae255befb6e4512654e3c3ac224a6061d34a1999d29cebbcde3b06 to build tracker '/tmp/pip-build-tracker-vevt0030' 2022-08-16T06:50:23,131 Created temporary directory: /tmp/pip-build-env-420z1nbl 2022-08-16T06:50:23,151 Created temporary directory: /tmp/pip-standalone-pip-j240md3_ 2022-08-16T06:50:25,642 Installing build dependencies: started 2022-08-16T06:50:25,644 Running command pip subprocess to install build dependencies 2022-08-16T06:50:37,050 Using pip 22.1.2 from /tmp/pip-standalone-pip-j240md3_/__env_pip__.zip/pip (python 3.9) 2022-08-16T06:50:38,769 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-16T06:50:42,861 Collecting setuptools>=42 2022-08-16T06:50:43,147 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.0.1-py3-none-any.whl (1.2 MB) 2022-08-16T06:50:43,809 Collecting wheel 2022-08-16T06:50:43,861 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-08-16T06:50:44,767 Collecting setuptools_scm[toml]>=3.4 2022-08-16T06:50:44,857 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.0.5-py3-none-any.whl (42 kB) 2022-08-16T06:50:45,251 Collecting typing-extensions 2022-08-16T06:50:45,363 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.3.0-py3-none-any.whl (25 kB) 2022-08-16T06:50:45,778 Collecting packaging>=20.0 2022-08-16T06:50:46,146 Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB) 2022-08-16T06:50:46,434 Collecting tomli>=1.0.0 2022-08-16T06:50:46,464 Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB) 2022-08-16T06:50:47,172 Collecting pyparsing!=3.0.5,>=2.0.2 2022-08-16T06:50:47,229 Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.9-py3-none-any.whl (98 kB) 2022-08-16T06:50:55,596 Installing collected packages: wheel, typing-extensions, tomli, setuptools, pyparsing, packaging, setuptools_scm 2022-08-16T06:50:55,888 Creating /tmp/pip-build-env-420z1nbl/overlay/bin 2022-08-16T06:50:55,893 changing mode of /tmp/pip-build-env-420z1nbl/overlay/bin/wheel to 755 2022-08-16T06:51:02,750 Successfully installed packaging-21.3 pyparsing-3.0.9 setuptools-65.0.1 setuptools_scm-7.0.5 tomli-2.0.1 typing-extensions-4.3.0 wheel-0.37.1 2022-08-16T06:51:02,954 --- Logging error --- 2022-08-16T06:51:02,971 Traceback (most recent call last): 2022-08-16T06:51:02,972 File "/tmp/pip-standalone-pip-j240md3_/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-08-16T06:51:02,972 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-08-16T06:51:02,972 File "/tmp/pip-standalone-pip-j240md3_/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-08-16T06:51:02,973 extend(render(renderable, render_options)) 2022-08-16T06:51:02,973 File "/tmp/pip-standalone-pip-j240md3_/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-08-16T06:51:02,973 for render_output in iter_render: 2022-08-16T06:51:02,974 File "/tmp/pip-standalone-pip-j240md3_/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-08-16T06:51:02,974 for line in lines: 2022-08-16T06:51:02,974 File "/tmp/pip-standalone-pip-j240md3_/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-08-16T06:51:02,975 for segment in segments: 2022-08-16T06:51:02,975 File "/tmp/pip-standalone-pip-j240md3_/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-08-16T06:51:02,975 renderable = rich_cast(renderable) 2022-08-16T06:51:02,975 File "/tmp/pip-standalone-pip-j240md3_/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-08-16T06:51:02,976 renderable = cast_method() 2022-08-16T06:51:02,976 File "/tmp/pip-standalone-pip-j240md3_/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-08-16T06:51:02,976 pip_cmd = get_best_invocation_for_this_pip() 2022-08-16T06:51:02,977 File "/tmp/pip-standalone-pip-j240md3_/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip 2022-08-16T06:51:02,977 if found_executable and os.path.samefile( 2022-08-16T06:51:02,978 File "/usr/lib/python3.9/genericpath.py", line 101, in samefile 2022-08-16T06:51:02,978 s2 = os.stat(f2) 2022-08-16T06:51:02,978 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9' 2022-08-16T06:51:02,978 Call stack: 2022-08-16T06:51:02,983 File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main 2022-08-16T06:51:02,984 return _run_code(code, main_globals, None, 2022-08-16T06:51:02,984 File "/usr/lib/python3.9/runpy.py", line 87, in _run_code 2022-08-16T06:51:02,984 exec(code, run_globals) 2022-08-16T06:51:02,985 File "/tmp/pip-standalone-pip-j240md3_/__env_pip__.zip/pip/__main__.py", line 31, in 2022-08-16T06:51:02,985 sys.exit(_main()) 2022-08-16T06:51:02,985 File "/tmp/pip-standalone-pip-j240md3_/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-08-16T06:51:02,986 return command.main(cmd_args) 2022-08-16T06:51:02,986 File "/tmp/pip-standalone-pip-j240md3_/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-08-16T06:51:02,986 return self._main(args) 2022-08-16T06:51:02,987 File "/tmp/pip-standalone-pip-j240md3_/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-08-16T06:51:02,987 self.handle_pip_version_check(options) 2022-08-16T06:51:02,987 File "/tmp/pip-standalone-pip-j240md3_/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-08-16T06:51:02,988 pip_self_version_check(session, options) 2022-08-16T06:51:02,988 File "/tmp/pip-standalone-pip-j240md3_/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-08-16T06:51:02,988 logger.info("[present-rich] %s", upgrade_prompt) 2022-08-16T06:51:02,988 File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info 2022-08-16T06:51:02,989 self._log(INFO, msg, args, **kwargs) 2022-08-16T06:51:02,989 File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log 2022-08-16T06:51:02,989 self.handle(record) 2022-08-16T06:51:02,990 File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle 2022-08-16T06:51:02,990 self.callHandlers(record) 2022-08-16T06:51:02,990 File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers 2022-08-16T06:51:02,990 hdlr.handle(record) 2022-08-16T06:51:02,991 File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle 2022-08-16T06:51:02,991 self.emit(record) 2022-08-16T06:51:02,991 File "/tmp/pip-standalone-pip-j240md3_/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-08-16T06:51:02,992 self.handleError(record) 2022-08-16T06:51:02,992 Message: '[present-rich] %s' 2022-08-16T06:51:02,992 Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),) 2022-08-16T06:51:03,552 Installing build dependencies: finished with status 'done' 2022-08-16T06:51:03,601 Getting requirements to build wheel: started 2022-08-16T06:51:03,603 Running command Getting requirements to build wheel 2022-08-16T06:51:05,672 Getting requirements to build wheel: finished with status 'done' 2022-08-16T06:51:05,705 Created temporary directory: /tmp/pip-modern-metadata-f6kwoul9 2022-08-16T06:51:05,711 Preparing metadata (pyproject.toml): started 2022-08-16T06:51:05,713 Running command Preparing metadata (pyproject.toml) 2022-08-16T06:51:14,238 running dist_info 2022-08-16T06:51:14,861 creating /tmp/pip-modern-metadata-f6kwoul9/altocumulus.egg-info 2022-08-16T06:51:15,450 writing /tmp/pip-modern-metadata-f6kwoul9/altocumulus.egg-info/PKG-INFO 2022-08-16T06:51:16,008 writing dependency_links to /tmp/pip-modern-metadata-f6kwoul9/altocumulus.egg-info/dependency_links.txt 2022-08-16T06:51:17,668 writing entry points to /tmp/pip-modern-metadata-f6kwoul9/altocumulus.egg-info/entry_points.txt 2022-08-16T06:51:18,775 writing requirements to /tmp/pip-modern-metadata-f6kwoul9/altocumulus.egg-info/requires.txt 2022-08-16T06:51:19,329 writing top-level names to /tmp/pip-modern-metadata-f6kwoul9/altocumulus.egg-info/top_level.txt 2022-08-16T06:51:19,332 writing manifest file '/tmp/pip-modern-metadata-f6kwoul9/altocumulus.egg-info/SOURCES.txt' 2022-08-16T06:51:20,080 listing git files failed - pretending there aren't any 2022-08-16T06:51:20,099 reading manifest file '/tmp/pip-modern-metadata-f6kwoul9/altocumulus.egg-info/SOURCES.txt' 2022-08-16T06:51:20,104 adding license file 'LICENSE' 2022-08-16T06:51:20,110 writing manifest file '/tmp/pip-modern-metadata-f6kwoul9/altocumulus.egg-info/SOURCES.txt' 2022-08-16T06:51:20,113 creating '/tmp/pip-modern-metadata-f6kwoul9/altocumulus-2.1.2.dist-info' 2022-08-16T06:51:20,415 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-08-16T06:51:20,654 Preparing metadata (pyproject.toml): finished with status 'done' 2022-08-16T06:51:20,668 Source in /tmp/pip-wheel-4uaxweph/altocumulus_316a3e5fa0e649d687940560ac58dec1 has version 2.1.2, which satisfies requirement altocumulus==2.1.2 from https://files.pythonhosted.org/packages/3f/96/17813b8697094a3afca3a000ae8c55eb10d91def820a5201c28043c0b931/altocumulus-2.1.2.tar.gz#sha256=c2725e3e50ae255befb6e4512654e3c3ac224a6061d34a1999d29cebbcde3b06 2022-08-16T06:51:20,671 Removed altocumulus==2.1.2 from https://files.pythonhosted.org/packages/3f/96/17813b8697094a3afca3a000ae8c55eb10d91def820a5201c28043c0b931/altocumulus-2.1.2.tar.gz#sha256=c2725e3e50ae255befb6e4512654e3c3ac224a6061d34a1999d29cebbcde3b06 from build tracker '/tmp/pip-build-tracker-vevt0030' 2022-08-16T06:51:20,684 Created temporary directory: /tmp/pip-unpack-eima0nfz 2022-08-16T06:51:20,685 Building wheels for collected packages: altocumulus 2022-08-16T06:51:20,694 Created temporary directory: /tmp/pip-wheel-jdf9afaz 2022-08-16T06:51:20,695 Destination directory: /tmp/pip-wheel-jdf9afaz 2022-08-16T06:51:20,700 Building wheel for altocumulus (pyproject.toml): started 2022-08-16T06:51:20,702 Running command Building wheel for altocumulus (pyproject.toml) 2022-08-16T06:51:28,760 running bdist_wheel 2022-08-16T06:51:29,947 running build 2022-08-16T06:51:29,948 running build_py 2022-08-16T06:51:30,586 creating build 2022-08-16T06:51:30,587 creating build/lib 2022-08-16T06:51:30,588 creating build/lib/alto 2022-08-16T06:51:30,590 copying alto/__main__.py -> build/lib/alto 2022-08-16T06:51:30,594 copying alto/__init__.py -> build/lib/alto 2022-08-16T06:51:30,596 running egg_info 2022-08-16T06:51:31,799 writing altocumulus.egg-info/PKG-INFO 2022-08-16T06:51:32,356 writing dependency_links to altocumulus.egg-info/dependency_links.txt 2022-08-16T06:51:34,019 writing entry points to altocumulus.egg-info/entry_points.txt 2022-08-16T06:51:35,126 writing requirements to altocumulus.egg-info/requires.txt 2022-08-16T06:51:35,682 writing top-level names to altocumulus.egg-info/top_level.txt 2022-08-16T06:51:35,797 listing git files failed - pretending there aren't any 2022-08-16T06:51:35,816 reading manifest file 'altocumulus.egg-info/SOURCES.txt' 2022-08-16T06:51:35,840 adding license file 'LICENSE' 2022-08-16T06:51:35,850 writing manifest file 'altocumulus.egg-info/SOURCES.txt' 2022-08-16T06:51:35,856 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-16T06:51:35,857 ############################ 2022-08-16T06:51:35,857 # Package would be ignored # 2022-08-16T06:51:35,858 ############################ 2022-08-16T06:51:35,858 Python recognizes 'alto.commands' as an importable package, however it is 2022-08-16T06:51:35,858 included in the distribution as "data". 2022-08-16T06:51:35,859 This behavior is likely to change in future versions of setuptools (and 2022-08-16T06:51:35,859 therefore is considered deprecated). 2022-08-16T06:51:35,859 Please make sure that 'alto.commands' is included as a package by using 2022-08-16T06:51:35,860 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-16T06:51:35,860 You can read more about "package discovery" and "data files" on setuptools 2022-08-16T06:51:35,861 documentation page. 2022-08-16T06:51:35,862 !! 2022-08-16T06:51:35,862 check.warn(importable) 2022-08-16T06:51:35,863 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-16T06:51:35,864 ############################ 2022-08-16T06:51:35,864 # Package would be ignored # 2022-08-16T06:51:35,864 ############################ 2022-08-16T06:51:35,864 Python recognizes 'alto.commands.cromwell' as an importable package, however it is 2022-08-16T06:51:35,865 included in the distribution as "data". 2022-08-16T06:51:35,865 This behavior is likely to change in future versions of setuptools (and 2022-08-16T06:51:35,865 therefore is considered deprecated). 2022-08-16T06:51:35,866 Please make sure that 'alto.commands.cromwell' is included as a package by using 2022-08-16T06:51:35,866 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-16T06:51:35,867 You can read more about "package discovery" and "data files" on setuptools 2022-08-16T06:51:35,867 documentation page. 2022-08-16T06:51:35,868 !! 2022-08-16T06:51:35,869 check.warn(importable) 2022-08-16T06:51:35,869 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-16T06:51:35,870 ############################ 2022-08-16T06:51:35,870 # Package would be ignored # 2022-08-16T06:51:35,870 ############################ 2022-08-16T06:51:35,871 Python recognizes 'alto.commands.terra' as an importable package, however it is 2022-08-16T06:51:35,871 included in the distribution as "data". 2022-08-16T06:51:35,871 This behavior is likely to change in future versions of setuptools (and 2022-08-16T06:51:35,872 therefore is considered deprecated). 2022-08-16T06:51:35,872 Please make sure that 'alto.commands.terra' is included as a package by using 2022-08-16T06:51:35,872 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-16T06:51:35,873 You can read more about "package discovery" and "data files" on setuptools 2022-08-16T06:51:35,873 documentation page. 2022-08-16T06:51:35,874 !! 2022-08-16T06:51:35,875 check.warn(importable) 2022-08-16T06:51:35,875 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-16T06:51:35,876 ############################ 2022-08-16T06:51:35,876 # Package would be ignored # 2022-08-16T06:51:35,876 ############################ 2022-08-16T06:51:35,877 Python recognizes 'alto.tests' as an importable package, however it is 2022-08-16T06:51:35,877 included in the distribution as "data". 2022-08-16T06:51:35,877 This behavior is likely to change in future versions of setuptools (and 2022-08-16T06:51:35,878 therefore is considered deprecated). 2022-08-16T06:51:35,878 Please make sure that 'alto.tests' is included as a package by using 2022-08-16T06:51:35,879 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-16T06:51:35,879 You can read more about "package discovery" and "data files" on setuptools 2022-08-16T06:51:35,880 documentation page. 2022-08-16T06:51:35,881 !! 2022-08-16T06:51:35,881 check.warn(importable) 2022-08-16T06:51:35,882 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-16T06:51:35,882 ############################ 2022-08-16T06:51:35,883 # Package would be ignored # 2022-08-16T06:51:35,883 ############################ 2022-08-16T06:51:35,883 Python recognizes 'alto.tests.inputs' as an importable package, however it is 2022-08-16T06:51:35,884 included in the distribution as "data". 2022-08-16T06:51:35,884 This behavior is likely to change in future versions of setuptools (and 2022-08-16T06:51:35,884 therefore is considered deprecated). 2022-08-16T06:51:35,885 Please make sure that 'alto.tests.inputs' is included as a package by using 2022-08-16T06:51:35,885 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-16T06:51:35,886 You can read more about "package discovery" and "data files" on setuptools 2022-08-16T06:51:35,886 documentation page. 2022-08-16T06:51:35,887 !! 2022-08-16T06:51:35,888 check.warn(importable) 2022-08-16T06:51:35,888 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-16T06:51:35,889 ############################ 2022-08-16T06:51:35,890 # Package would be ignored # 2022-08-16T06:51:35,890 ############################ 2022-08-16T06:51:35,890 Python recognizes 'alto.tests.inputs.flowcell1.s1' as an importable package, however it is 2022-08-16T06:51:35,891 included in the distribution as "data". 2022-08-16T06:51:35,891 This behavior is likely to change in future versions of setuptools (and 2022-08-16T06:51:35,891 therefore is considered deprecated). 2022-08-16T06:51:35,892 Please make sure that 'alto.tests.inputs.flowcell1.s1' is included as a package by using 2022-08-16T06:51:35,892 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-16T06:51:35,893 You can read more about "package discovery" and "data files" on setuptools 2022-08-16T06:51:35,893 documentation page. 2022-08-16T06:51:35,894 !! 2022-08-16T06:51:35,895 check.warn(importable) 2022-08-16T06:51:35,895 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-16T06:51:35,896 ############################ 2022-08-16T06:51:35,896 # Package would be ignored # 2022-08-16T06:51:35,897 ############################ 2022-08-16T06:51:35,897 Python recognizes 'alto.tests.inputs.flowcell1.s2' as an importable package, however it is 2022-08-16T06:51:35,897 included in the distribution as "data". 2022-08-16T06:51:35,898 This behavior is likely to change in future versions of setuptools (and 2022-08-16T06:51:35,898 therefore is considered deprecated). 2022-08-16T06:51:35,899 Please make sure that 'alto.tests.inputs.flowcell1.s2' is included as a package by using 2022-08-16T06:51:35,899 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-16T06:51:35,900 You can read more about "package discovery" and "data files" on setuptools 2022-08-16T06:51:35,900 documentation page. 2022-08-16T06:51:35,901 !! 2022-08-16T06:51:35,902 check.warn(importable) 2022-08-16T06:51:35,902 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-16T06:51:35,903 ############################ 2022-08-16T06:51:35,903 # Package would be ignored # 2022-08-16T06:51:35,903 ############################ 2022-08-16T06:51:35,904 Python recognizes 'alto.tests.inputs.flowcell2.s1' as an importable package, however it is 2022-08-16T06:51:35,904 included in the distribution as "data". 2022-08-16T06:51:35,904 This behavior is likely to change in future versions of setuptools (and 2022-08-16T06:51:35,905 therefore is considered deprecated). 2022-08-16T06:51:35,905 Please make sure that 'alto.tests.inputs.flowcell2.s1' is included as a package by using 2022-08-16T06:51:35,906 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-16T06:51:35,906 You can read more about "package discovery" and "data files" on setuptools 2022-08-16T06:51:35,907 documentation page. 2022-08-16T06:51:35,908 !! 2022-08-16T06:51:35,908 check.warn(importable) 2022-08-16T06:51:35,909 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-16T06:51:35,910 ############################ 2022-08-16T06:51:35,910 # Package would be ignored # 2022-08-16T06:51:35,910 ############################ 2022-08-16T06:51:35,910 Python recognizes 'alto.tests.inputs.flowcell2.s2' as an importable package, however it is 2022-08-16T06:51:35,911 included in the distribution as "data". 2022-08-16T06:51:35,911 This behavior is likely to change in future versions of setuptools (and 2022-08-16T06:51:35,911 therefore is considered deprecated). 2022-08-16T06:51:35,912 Please make sure that 'alto.tests.inputs.flowcell2.s2' is included as a package by using 2022-08-16T06:51:35,912 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-16T06:51:35,913 You can read more about "package discovery" and "data files" on setuptools 2022-08-16T06:51:35,913 documentation page. 2022-08-16T06:51:35,914 !! 2022-08-16T06:51:35,915 check.warn(importable) 2022-08-16T06:51:35,915 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-16T06:51:35,916 ############################ 2022-08-16T06:51:35,916 # Package would be ignored # 2022-08-16T06:51:35,917 ############################ 2022-08-16T06:51:35,917 Python recognizes 'alto.tests.inputs.test_sample' as an importable package, however it is 2022-08-16T06:51:35,917 included in the distribution as "data". 2022-08-16T06:51:35,918 This behavior is likely to change in future versions of setuptools (and 2022-08-16T06:51:35,918 therefore is considered deprecated). 2022-08-16T06:51:35,919 Please make sure that 'alto.tests.inputs.test_sample' is included as a package by using 2022-08-16T06:51:35,919 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-16T06:51:35,920 You can read more about "package discovery" and "data files" on setuptools 2022-08-16T06:51:35,920 documentation page. 2022-08-16T06:51:35,921 !! 2022-08-16T06:51:35,922 check.warn(importable) 2022-08-16T06:51:35,922 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-08-16T06:51:35,923 ############################ 2022-08-16T06:51:35,923 # Package would be ignored # 2022-08-16T06:51:35,924 ############################ 2022-08-16T06:51:35,924 Python recognizes 'alto.utils' as an importable package, however it is 2022-08-16T06:51:35,924 included in the distribution as "data". 2022-08-16T06:51:35,925 This behavior is likely to change in future versions of setuptools (and 2022-08-16T06:51:35,925 therefore is considered deprecated). 2022-08-16T06:51:35,925 Please make sure that 'alto.utils' is included as a package by using 2022-08-16T06:51:35,926 setuptools' `packages` configuration field or the proper discovery methods. 2022-08-16T06:51:35,926 You can read more about "package discovery" and "data files" on setuptools 2022-08-16T06:51:35,927 documentation page. 2022-08-16T06:51:35,928 !! 2022-08-16T06:51:35,928 check.warn(importable) 2022-08-16T06:51:35,929 creating build/lib/alto/commands 2022-08-16T06:51:35,929 copying alto/commands/__init__.py -> build/lib/alto/commands 2022-08-16T06:51:35,929 copying alto/commands/parse_monitoring_log.py -> build/lib/alto/commands 2022-08-16T06:51:35,930 copying alto/commands/query.py -> build/lib/alto/commands 2022-08-16T06:51:35,930 copying alto/commands/upload.py -> build/lib/alto/commands 2022-08-16T06:51:35,930 creating build/lib/alto/commands/cromwell 2022-08-16T06:51:35,931 copying alto/commands/cromwell/__init__.py -> build/lib/alto/commands/cromwell 2022-08-16T06:51:35,931 copying alto/commands/cromwell/abort.py -> build/lib/alto/commands/cromwell 2022-08-16T06:51:35,931 copying alto/commands/cromwell/check_status.py -> build/lib/alto/commands/cromwell 2022-08-16T06:51:35,932 copying alto/commands/cromwell/get_logs.py -> build/lib/alto/commands/cromwell 2022-08-16T06:51:35,932 copying alto/commands/cromwell/get_metadata.py -> build/lib/alto/commands/cromwell 2022-08-16T06:51:35,932 copying alto/commands/cromwell/list_jobs.py -> build/lib/alto/commands/cromwell 2022-08-16T06:51:35,933 copying alto/commands/cromwell/run.py -> build/lib/alto/commands/cromwell 2022-08-16T06:51:35,933 creating build/lib/alto/commands/terra 2022-08-16T06:51:35,933 copying alto/commands/terra/__init__.py -> build/lib/alto/commands/terra 2022-08-16T06:51:35,934 copying alto/commands/terra/add_method.py -> build/lib/alto/commands/terra 2022-08-16T06:51:35,936 copying alto/commands/terra/remove_method.py -> build/lib/alto/commands/terra 2022-08-16T06:51:35,940 copying alto/commands/terra/run.py -> build/lib/alto/commands/terra 2022-08-16T06:51:35,944 copying alto/commands/terra/storage_estimate.py -> build/lib/alto/commands/terra 2022-08-16T06:51:35,948 creating build/lib/alto/tests 2022-08-16T06:51:35,950 copying alto/tests/__init__.py -> build/lib/alto/tests 2022-08-16T06:51:35,953 copying alto/tests/command_tests.py -> build/lib/alto/tests 2022-08-16T06:51:35,957 copying alto/tests/test.json -> build/lib/alto/tests 2022-08-16T06:51:35,960 creating build/lib/alto/tests/inputs 2022-08-16T06:51:35,962 copying alto/tests/inputs/echo.wdl -> build/lib/alto/tests/inputs 2022-08-16T06:51:35,966 creating build/lib/alto/tests/inputs/flowcell1 2022-08-16T06:51:35,966 creating build/lib/alto/tests/inputs/flowcell1/s1 2022-08-16T06:51:35,968 copying alto/tests/inputs/flowcell1/s1/s1_I1.fastq.gz -> build/lib/alto/tests/inputs/flowcell1/s1 2022-08-16T06:51:35,971 copying alto/tests/inputs/flowcell1/s1/s1_R1.fastq.gz -> build/lib/alto/tests/inputs/flowcell1/s1 2022-08-16T06:51:35,975 copying alto/tests/inputs/flowcell1/s1/s1_R2.fastq.gz -> build/lib/alto/tests/inputs/flowcell1/s1 2022-08-16T06:51:35,978 creating build/lib/alto/tests/inputs/flowcell1/s2 2022-08-16T06:51:35,979 copying alto/tests/inputs/flowcell1/s2/s2_I1.fastq.gz -> build/lib/alto/tests/inputs/flowcell1/s2 2022-08-16T06:51:35,982 copying alto/tests/inputs/flowcell1/s2/s2_R1.fastq.gz -> build/lib/alto/tests/inputs/flowcell1/s2 2022-08-16T06:51:35,986 copying alto/tests/inputs/flowcell1/s2/s2_R2.fastq.gz -> build/lib/alto/tests/inputs/flowcell1/s2 2022-08-16T06:51:35,989 creating build/lib/alto/tests/inputs/flowcell2 2022-08-16T06:51:35,990 creating build/lib/alto/tests/inputs/flowcell2/s1 2022-08-16T06:51:35,992 copying alto/tests/inputs/flowcell2/s1/s1_I1.fastq.gz -> build/lib/alto/tests/inputs/flowcell2/s1 2022-08-16T06:51:35,995 copying alto/tests/inputs/flowcell2/s1/s1_R1.fastq.gz -> build/lib/alto/tests/inputs/flowcell2/s1 2022-08-16T06:51:35,999 copying alto/tests/inputs/flowcell2/s1/s1_R2.fastq.gz -> build/lib/alto/tests/inputs/flowcell2/s1 2022-08-16T06:51:36,002 creating build/lib/alto/tests/inputs/flowcell2/s2 2022-08-16T06:51:36,003 copying alto/tests/inputs/flowcell2/s2/s2_I1.fastq.gz -> build/lib/alto/tests/inputs/flowcell2/s2 2022-08-16T06:51:36,007 copying alto/tests/inputs/flowcell2/s2/s2_R1.fastq.gz -> build/lib/alto/tests/inputs/flowcell2/s2 2022-08-16T06:51:36,010 copying alto/tests/inputs/flowcell2/s2/s2_R2.fastq.gz -> build/lib/alto/tests/inputs/flowcell2/s2 2022-08-16T06:51:36,013 creating build/lib/alto/tests/inputs/test_sample 2022-08-16T06:51:36,015 copying alto/tests/inputs/test_sample/test_sample_S1_L001_I1_001.fastq.gz -> build/lib/alto/tests/inputs/test_sample 2022-08-16T06:51:36,018 copying alto/tests/inputs/test_sample/test_sample_S1_L001_R1_001.fastq.gz -> build/lib/alto/tests/inputs/test_sample 2022-08-16T06:51:36,021 copying alto/tests/inputs/test_sample/test_sample_S1_L001_R2_001.fastq.gz -> build/lib/alto/tests/inputs/test_sample 2022-08-16T06:51:36,024 creating build/lib/alto/utils 2022-08-16T06:51:36,026 copying alto/utils/__init__.py -> build/lib/alto/utils 2022-08-16T06:51:36,030 copying alto/utils/bcl_utils.py -> build/lib/alto/utils 2022-08-16T06:51:36,034 copying alto/utils/dockstore_utils.py -> build/lib/alto/utils 2022-08-16T06:51:36,039 copying alto/utils/fastq_utils.py -> build/lib/alto/utils 2022-08-16T06:51:36,042 copying alto/utils/firecloud_utils.py -> build/lib/alto/utils 2022-08-16T06:51:36,047 copying alto/utils/io_utils.py -> build/lib/alto/utils 2022-08-16T06:51:37,251 installing to build/bdist.linux-armv7l/wheel 2022-08-16T06:51:37,252 running install 2022-08-16T06:51:37,314 running install_lib 2022-08-16T06:51:37,909 creating build/bdist.linux-armv7l 2022-08-16T06:51:37,910 creating build/bdist.linux-armv7l/wheel 2022-08-16T06:51:37,913 creating build/bdist.linux-armv7l/wheel/alto 2022-08-16T06:51:37,916 creating build/bdist.linux-armv7l/wheel/alto/commands 2022-08-16T06:51:37,919 creating build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2022-08-16T06:51:37,920 copying build/lib/alto/commands/cromwell/list_jobs.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2022-08-16T06:51:37,925 copying build/lib/alto/commands/cromwell/check_status.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2022-08-16T06:51:37,929 copying build/lib/alto/commands/cromwell/get_logs.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2022-08-16T06:51:37,932 copying build/lib/alto/commands/cromwell/__init__.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2022-08-16T06:51:37,936 copying build/lib/alto/commands/cromwell/get_metadata.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2022-08-16T06:51:37,939 copying build/lib/alto/commands/cromwell/abort.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2022-08-16T06:51:37,943 copying build/lib/alto/commands/cromwell/run.py -> build/bdist.linux-armv7l/wheel/alto/commands/cromwell 2022-08-16T06:51:37,947 copying build/lib/alto/commands/parse_monitoring_log.py -> build/bdist.linux-armv7l/wheel/alto/commands 2022-08-16T06:51:37,951 copying build/lib/alto/commands/__init__.py -> build/bdist.linux-armv7l/wheel/alto/commands 2022-08-16T06:51:37,954 copying build/lib/alto/commands/query.py -> build/bdist.linux-armv7l/wheel/alto/commands 2022-08-16T06:51:37,959 creating build/bdist.linux-armv7l/wheel/alto/commands/terra 2022-08-16T06:51:37,960 copying build/lib/alto/commands/terra/remove_method.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra 2022-08-16T06:51:37,964 copying build/lib/alto/commands/terra/storage_estimate.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra 2022-08-16T06:51:37,968 copying build/lib/alto/commands/terra/__init__.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra 2022-08-16T06:51:37,972 copying build/lib/alto/commands/terra/add_method.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra 2022-08-16T06:51:37,978 copying build/lib/alto/commands/terra/run.py -> build/bdist.linux-armv7l/wheel/alto/commands/terra 2022-08-16T06:51:37,982 copying build/lib/alto/commands/upload.py -> build/bdist.linux-armv7l/wheel/alto/commands 2022-08-16T06:51:37,986 copying build/lib/alto/__main__.py -> build/bdist.linux-armv7l/wheel/alto 2022-08-16T06:51:37,990 copying build/lib/alto/__init__.py -> build/bdist.linux-armv7l/wheel/alto 2022-08-16T06:51:37,994 creating build/bdist.linux-armv7l/wheel/alto/tests 2022-08-16T06:51:37,996 creating build/bdist.linux-armv7l/wheel/alto/tests/inputs 2022-08-16T06:51:37,999 copying build/lib/alto/tests/inputs/echo.wdl -> build/bdist.linux-armv7l/wheel/alto/tests/inputs 2022-08-16T06:51:38,003 creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1 2022-08-16T06:51:38,006 creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s2 2022-08-16T06:51:38,007 copying build/lib/alto/tests/inputs/flowcell1/s2/s2_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s2 2022-08-16T06:51:38,011 copying build/lib/alto/tests/inputs/flowcell1/s2/s2_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s2 2022-08-16T06:51:38,014 copying build/lib/alto/tests/inputs/flowcell1/s2/s2_I1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s2 2022-08-16T06:51:38,019 creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s1 2022-08-16T06:51:38,021 copying build/lib/alto/tests/inputs/flowcell1/s1/s1_I1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s1 2022-08-16T06:51:38,024 copying build/lib/alto/tests/inputs/flowcell1/s1/s1_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s1 2022-08-16T06:51:38,027 copying build/lib/alto/tests/inputs/flowcell1/s1/s1_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell1/s1 2022-08-16T06:51:38,031 creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2 2022-08-16T06:51:38,033 creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s2 2022-08-16T06:51:38,035 copying build/lib/alto/tests/inputs/flowcell2/s2/s2_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s2 2022-08-16T06:51:38,038 copying build/lib/alto/tests/inputs/flowcell2/s2/s2_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s2 2022-08-16T06:51:38,041 copying build/lib/alto/tests/inputs/flowcell2/s2/s2_I1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s2 2022-08-16T06:51:38,044 creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s1 2022-08-16T06:51:38,046 copying build/lib/alto/tests/inputs/flowcell2/s1/s1_I1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s1 2022-08-16T06:51:38,049 copying build/lib/alto/tests/inputs/flowcell2/s1/s1_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s1 2022-08-16T06:51:38,052 copying build/lib/alto/tests/inputs/flowcell2/s1/s1_R2.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/flowcell2/s1 2022-08-16T06:51:38,055 creating build/bdist.linux-armv7l/wheel/alto/tests/inputs/test_sample 2022-08-16T06:51:38,057 copying build/lib/alto/tests/inputs/test_sample/test_sample_S1_L001_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/test_sample 2022-08-16T06:51:38,061 copying build/lib/alto/tests/inputs/test_sample/test_sample_S1_L001_I1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/test_sample 2022-08-16T06:51:38,064 copying build/lib/alto/tests/inputs/test_sample/test_sample_S1_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/alto/tests/inputs/test_sample 2022-08-16T06:51:38,068 copying build/lib/alto/tests/__init__.py -> build/bdist.linux-armv7l/wheel/alto/tests 2022-08-16T06:51:38,072 copying build/lib/alto/tests/command_tests.py -> build/bdist.linux-armv7l/wheel/alto/tests 2022-08-16T06:51:38,075 copying build/lib/alto/tests/test.json -> build/bdist.linux-armv7l/wheel/alto/tests 2022-08-16T06:51:38,079 creating build/bdist.linux-armv7l/wheel/alto/utils 2022-08-16T06:51:38,081 copying build/lib/alto/utils/bcl_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils 2022-08-16T06:51:38,085 copying build/lib/alto/utils/fastq_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils 2022-08-16T06:51:38,088 copying build/lib/alto/utils/__init__.py -> build/bdist.linux-armv7l/wheel/alto/utils 2022-08-16T06:51:38,091 copying build/lib/alto/utils/firecloud_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils 2022-08-16T06:51:38,095 copying build/lib/alto/utils/io_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils 2022-08-16T06:51:38,099 copying build/lib/alto/utils/dockstore_utils.py -> build/bdist.linux-armv7l/wheel/alto/utils 2022-08-16T06:51:38,103 running install_egg_info 2022-08-16T06:51:38,699 Copying altocumulus.egg-info to build/bdist.linux-armv7l/wheel/altocumulus-2.1.2-py3.9.egg-info 2022-08-16T06:51:38,729 running install_scripts 2022-08-16T06:51:38,920 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-08-16T06:51:38,930 creating build/bdist.linux-armv7l/wheel/altocumulus-2.1.2.dist-info/WHEEL 2022-08-16T06:51:38,935 creating '/tmp/pip-wheel-jdf9afaz/tmp4ke03uja/altocumulus-2.1.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-08-16T06:51:38,939 adding 'alto/__init__.py' 2022-08-16T06:51:38,942 adding 'alto/__main__.py' 2022-08-16T06:51:38,945 adding 'alto/commands/__init__.py' 2022-08-16T06:51:38,948 adding 'alto/commands/parse_monitoring_log.py' 2022-08-16T06:51:38,951 adding 'alto/commands/query.py' 2022-08-16T06:51:38,954 adding 'alto/commands/upload.py' 2022-08-16T06:51:38,957 adding 'alto/commands/cromwell/__init__.py' 2022-08-16T06:51:38,960 adding 'alto/commands/cromwell/abort.py' 2022-08-16T06:51:38,962 adding 'alto/commands/cromwell/check_status.py' 2022-08-16T06:51:38,965 adding 'alto/commands/cromwell/get_logs.py' 2022-08-16T06:51:38,968 adding 'alto/commands/cromwell/get_metadata.py' 2022-08-16T06:51:38,971 adding 'alto/commands/cromwell/list_jobs.py' 2022-08-16T06:51:38,975 adding 'alto/commands/cromwell/run.py' 2022-08-16T06:51:38,978 adding 'alto/commands/terra/__init__.py' 2022-08-16T06:51:38,981 adding 'alto/commands/terra/add_method.py' 2022-08-16T06:51:38,984 adding 'alto/commands/terra/remove_method.py' 2022-08-16T06:51:38,987 adding 'alto/commands/terra/run.py' 2022-08-16T06:51:38,990 adding 'alto/commands/terra/storage_estimate.py' 2022-08-16T06:51:38,993 adding 'alto/tests/__init__.py' 2022-08-16T06:51:38,995 adding 'alto/tests/command_tests.py' 2022-08-16T06:51:38,998 adding 'alto/tests/test.json' 2022-08-16T06:51:39,001 adding 'alto/tests/inputs/echo.wdl' 2022-08-16T06:51:39,005 adding 'alto/tests/inputs/flowcell1/s1/s1_I1.fastq.gz' 2022-08-16T06:51:39,008 adding 'alto/tests/inputs/flowcell1/s1/s1_R1.fastq.gz' 2022-08-16T06:51:39,010 adding 'alto/tests/inputs/flowcell1/s1/s1_R2.fastq.gz' 2022-08-16T06:51:39,013 adding 'alto/tests/inputs/flowcell1/s2/s2_I1.fastq.gz' 2022-08-16T06:51:39,015 adding 'alto/tests/inputs/flowcell1/s2/s2_R1.fastq.gz' 2022-08-16T06:51:39,017 adding 'alto/tests/inputs/flowcell1/s2/s2_R2.fastq.gz' 2022-08-16T06:51:39,022 adding 'alto/tests/inputs/flowcell2/s1/s1_I1.fastq.gz' 2022-08-16T06:51:39,024 adding 'alto/tests/inputs/flowcell2/s1/s1_R1.fastq.gz' 2022-08-16T06:51:39,026 adding 'alto/tests/inputs/flowcell2/s1/s1_R2.fastq.gz' 2022-08-16T06:51:39,029 adding 'alto/tests/inputs/flowcell2/s2/s2_I1.fastq.gz' 2022-08-16T06:51:39,031 adding 'alto/tests/inputs/flowcell2/s2/s2_R1.fastq.gz' 2022-08-16T06:51:39,033 adding 'alto/tests/inputs/flowcell2/s2/s2_R2.fastq.gz' 2022-08-16T06:51:39,037 adding 'alto/tests/inputs/test_sample/test_sample_S1_L001_I1_001.fastq.gz' 2022-08-16T06:51:39,039 adding 'alto/tests/inputs/test_sample/test_sample_S1_L001_R1_001.fastq.gz' 2022-08-16T06:51:39,041 adding 'alto/tests/inputs/test_sample/test_sample_S1_L001_R2_001.fastq.gz' 2022-08-16T06:51:39,045 adding 'alto/utils/__init__.py' 2022-08-16T06:51:39,048 adding 'alto/utils/bcl_utils.py' 2022-08-16T06:51:39,051 adding 'alto/utils/dockstore_utils.py' 2022-08-16T06:51:39,054 adding 'alto/utils/fastq_utils.py' 2022-08-16T06:51:39,057 adding 'alto/utils/firecloud_utils.py' 2022-08-16T06:51:39,061 adding 'alto/utils/io_utils.py' 2022-08-16T06:51:39,066 adding 'altocumulus-2.1.2.dist-info/LICENSE' 2022-08-16T06:51:39,069 adding 'altocumulus-2.1.2.dist-info/METADATA' 2022-08-16T06:51:39,070 adding 'altocumulus-2.1.2.dist-info/WHEEL' 2022-08-16T06:51:39,072 adding 'altocumulus-2.1.2.dist-info/entry_points.txt' 2022-08-16T06:51:39,074 adding 'altocumulus-2.1.2.dist-info/top_level.txt' 2022-08-16T06:51:39,076 adding 'altocumulus-2.1.2.dist-info/RECORD' 2022-08-16T06:51:39,081 removing build/bdist.linux-armv7l/wheel 2022-08-16T06:51:39,402 Building wheel for altocumulus (pyproject.toml): finished with status 'done' 2022-08-16T06:51:39,415 Created wheel for altocumulus: filename=altocumulus-2.1.2-py3-none-any.whl size=36139 sha256=7151f5adf0b58b4868508be6a2c7ca9613c86d95878299abd62d462c6b2b31f0 2022-08-16T06:51:39,418 Stored in directory: /tmp/pip-ephem-wheel-cache-89fj8s4g/wheels/bf/f6/e0/724af8639b0a7828d5efdb7e45d7997d634846b2cd789e92d7 2022-08-16T06:51:39,442 Successfully built altocumulus 2022-08-16T06:51:39,451 Removed build tracker: '/tmp/pip-build-tracker-vevt0030'