2022-08-17T00:12:03,097 Created temporary directory: /tmp/pip-ephem-wheel-cache-l3wihg3k 2022-08-17T00:12:03,103 Created temporary directory: /tmp/pip-build-tracker-p_3ng601 2022-08-17T00:12:03,104 Initialized build tracking at /tmp/pip-build-tracker-p_3ng601 2022-08-17T00:12:03,104 Created build tracker: /tmp/pip-build-tracker-p_3ng601 2022-08-17T00:12:03,104 Entered build tracker: /tmp/pip-build-tracker-p_3ng601 2022-08-17T00:12:03,105 Created temporary directory: /tmp/pip-wheel-h05udta0 2022-08-17T00:12:03,169 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-17T00:12:03,176 2 location(s) to search for versions of bioontologies: 2022-08-17T00:12:03,176 * https://pypi.org/simple/bioontologies/ 2022-08-17T00:12:03,176 * https://www.piwheels.org/simple/bioontologies/ 2022-08-17T00:12:03,178 Fetching project page and analyzing links: https://pypi.org/simple/bioontologies/ 2022-08-17T00:12:03,179 Getting page https://pypi.org/simple/bioontologies/ 2022-08-17T00:12:03,182 Found index url https://pypi.org/simple 2022-08-17T00:12:03,402 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/02/70/0e872793ea49436026685bb3d51079af3947bb9a699e4ed5ff9550c83310/bioontologies-0.0.1-py3-none-any.whl#sha256=5072a0b9840de2b223ab07d7e645bbbb6df545a6248b1e9056144b47ebb0af2b (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2022-08-17T00:12:03,403 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/e8/9d/8acb7f9144335763c181e32d20062cc121aa2faf6c7d00a44b57533cb766/bioontologies-0.0.1.tar.gz#sha256=8d638acb2eea4506dc531708b9f614d82db8c0b7964d81eff067e56bcf62557d (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2022-08-17T00:12:03,404 Skipping link: 0.0.1 Requires-Python >=3.8: https://files.pythonhosted.org/packages/e8/9d/8acb7f9144335763c181e32d20062cc121aa2faf6c7d00a44b57533cb766/bioontologies-0.0.1.tar.gz#sha256=8d638acb2eea4506dc531708b9f614d82db8c0b7964d81eff067e56bcf62557d (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2022-08-17T00:12:03,405 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/09/50/0e253b578e62eafa162c52627a5f737f83403f62253ce52f40415b75e7c8/bioontologies-0.0.2-py3-none-any.whl#sha256=4c7fa23f0c793d908ada4b66c2d055a55e66ce8b0e252ce8746c8eb4da1e038b (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2022-08-17T00:12:03,406 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/26/5e/66b7a336501576cd1abdec05eeba85455bf8dff4f57f4e7f0f51a1815b31/bioontologies-0.0.2.tar.gz#sha256=6479e9c4e629b0e130430ab8560384241929862a1af5ade721fbbe7762a8e7c2 (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2022-08-17T00:12:03,406 Skipping link: 0.0.2 Requires-Python >=3.8: https://files.pythonhosted.org/packages/26/5e/66b7a336501576cd1abdec05eeba85455bf8dff4f57f4e7f0f51a1815b31/bioontologies-0.0.2.tar.gz#sha256=6479e9c4e629b0e130430ab8560384241929862a1af5ade721fbbe7762a8e7c2 (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2022-08-17T00:12:03,407 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/f1/b4/e8645504342369e0d6600f6273507f8d629bd36445925f1efd76bd7ce189/bioontologies-0.0.3-py3-none-any.whl#sha256=e465dbce0f51014e7cb09b588d14d3b700b3899490a5ca47f0de776a1671fb66 (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2022-08-17T00:12:03,408 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/89/18/7aef50c5fe0330315d874bad225d0c826e68d2a2a2fbaa749ebe025bd42a/bioontologies-0.0.3.tar.gz#sha256=c6c0eb605e5cf162a190ef2f0c8960384184bcc07730a6af048aff825615414c (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2022-08-17T00:12:03,409 Skipping link: 0.0.3 Requires-Python >=3.8: https://files.pythonhosted.org/packages/89/18/7aef50c5fe0330315d874bad225d0c826e68d2a2a2fbaa749ebe025bd42a/bioontologies-0.0.3.tar.gz#sha256=c6c0eb605e5cf162a190ef2f0c8960384184bcc07730a6af048aff825615414c (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2022-08-17T00:12:03,409 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/30/2c/9522cb9b1ce05156b116dce08c4488079059c73e42b26865503b130d83fd/bioontologies-0.0.4-py3-none-any.whl#sha256=320bfc75260a33895e9559fc573a5946281dbec93ed26d1d54c6398864607133 (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7) 2022-08-17T00:12:03,411 Found link https://files.pythonhosted.org/packages/7c/3b/7adedad217cbcf5fd1a182023db493943b7b07e38971e8a30b3c84802758/bioontologies-0.0.4.tar.gz#sha256=a624ee76a9712ccde10795091b3a583ee82194abaf3e589fe92701da3004b177 (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7), version: 0.0.4 2022-08-17T00:12:03,412 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/b4/fa/d769f824f33305b01902985e08d42c22ede00839e1b7c59db3d3943c62ec/bioontologies-0.0.5-py3-none-any.whl#sha256=6d540f193226dfb47da940bd713f852c125d77312bc26109ad05d8c4f0218f71 (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7) 2022-08-17T00:12:03,413 Found link https://files.pythonhosted.org/packages/0d/f5/902b5d8471b8b9ae9491b07619159e365ab8bbd509c604a445a8d9e47433/bioontologies-0.0.5.tar.gz#sha256=21ddd45d8457027c9ba309952e401792b1ffc8bc3fb10c8c7dbe3b3f963716fe (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7), version: 0.0.5 2022-08-17T00:12:03,414 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/e6/d9/75a47d8460fac7bf8cadfd62fa5fb868214a3fadc91cdf83b75ca7b08f7f/bioontologies-0.1.0-py3-none-any.whl#sha256=1133d637760bdc2e624a82fa1c9fc2863e8abb275b991cd8ba3bc4c25864335c (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7) 2022-08-17T00:12:03,415 Found link https://files.pythonhosted.org/packages/3a/61/e3a5584bec3fa16118f3834905aacd6d38984029c69459e47f7fdbbb6c7c/bioontologies-0.1.0.tar.gz#sha256=a351338096b34545eb0fab9bcc88ea12615696640f158441e8f919037812043a (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7), version: 0.1.0 2022-08-17T00:12:03,416 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/e4/f5/c66135d5f4737c398395950cfdeaa6793af6474308714bc3984c82feaf86/bioontologies-0.1.1-py3-none-any.whl#sha256=5371ac6455629fad3b76ab1aaac9d36036dd62e460a8c219ff85adefdd8e31a2 (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7) 2022-08-17T00:12:03,417 Found link https://files.pythonhosted.org/packages/48/59/a9863e733647722d56d58472671f91dc2f08ed5bbb028029fea6f5bd737c/bioontologies-0.1.1.tar.gz#sha256=d9e0d705e6282d5d3d15ad6f85aac85588b56a5814d8ab6787cf816e97cc2c13 (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7), version: 0.1.1 2022-08-17T00:12:03,418 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/85/b6/6d6b59f50e59573263b4a0a7e50256f0e210c5ab90ce8295d2206fddf51d/bioontologies-0.1.2-py3-none-any.whl#sha256=8ea308a770894415eedf4b4a37e2d7e339e7b0e6e947f234165cccea1e00ba6f (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7) 2022-08-17T00:12:03,419 Found link https://files.pythonhosted.org/packages/fd/4e/dde985f17ac6586c578ab9d42be5de724a700215d138d4f3b37cc3016af5/bioontologies-0.1.2.tar.gz#sha256=1a3b2ae21b282314a10c09e584fbe6ce70dbfb522031bd6af9b8b44fcf6f963a (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7), version: 0.1.2 2022-08-17T00:12:03,420 Fetching project page and analyzing links: https://www.piwheels.org/simple/bioontologies/ 2022-08-17T00:12:03,421 Getting page https://www.piwheels.org/simple/bioontologies/ 2022-08-17T00:12:03,423 Found index url https://www.piwheels.org/simple 2022-08-17T00:12:03,651 Skipping link: No binaries permitted for bioontologies: https://www.piwheels.org/simple/bioontologies/bioontologies-0.1.1-py3-none-any.whl#sha256=88d6734db023167440ca13719d9900571fed79570cffb5c77594885ee21180b7 (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.7) 2022-08-17T00:12:03,652 Skipping link: No binaries permitted for bioontologies: https://www.piwheels.org/simple/bioontologies/bioontologies-0.1.0-py3-none-any.whl#sha256=6b2521788855b76e2f16e3ec55bcbe578508c5e860badaa6f5fb3ae85a665648 (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.7) 2022-08-17T00:12:03,652 Skipping link: No binaries permitted for bioontologies: https://www.piwheels.org/simple/bioontologies/bioontologies-0.0.5-py3-none-any.whl#sha256=d3bf993999fa7233d2cc31a0fb44bcb35b3d96c91c4e658a2ee1df703edc990f (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.7) 2022-08-17T00:12:03,653 Skipping link: No binaries permitted for bioontologies: https://www.piwheels.org/simple/bioontologies/bioontologies-0.0.4-py3-none-any.whl#sha256=66bef33f75863d0e93f29b8a0dc2aadbbd63ce22ad7154c1d2a7f418ef5f5d4c (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.7) 2022-08-17T00:12:03,653 Skipping link: No binaries permitted for bioontologies: https://www.piwheels.org/simple/bioontologies/bioontologies-0.0.3-py3-none-any.whl#sha256=b5867e31daa04edec6c19aefe40d2fb800c6dc6e3efeeb648ff9705976b5ff3e (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.8) 2022-08-17T00:12:03,654 Skipping link: No binaries permitted for bioontologies: https://www.piwheels.org/simple/bioontologies/bioontologies-0.0.2-py3-none-any.whl#sha256=15a6029a370c2eb76d9c80ab6a4a61f34d97c2336cc3cde43a7d9d33a60a4328 (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.8) 2022-08-17T00:12:03,654 Skipping link: No binaries permitted for bioontologies: https://www.piwheels.org/simple/bioontologies/bioontologies-0.0.1-py3-none-any.whl#sha256=451449226ac2c5784b10d63cdb52cea7fcc466897d1cc58bc103c14aa3f3234c (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.8) 2022-08-17T00:12:03,655 Skipping link: not a file: https://www.piwheels.org/simple/bioontologies/ 2022-08-17T00:12:03,655 Skipping link: not a file: https://pypi.org/simple/bioontologies/ 2022-08-17T00:12:03,691 Given no hashes to check 1 links for project 'bioontologies': discarding no candidates 2022-08-17T00:12:03,722 Collecting bioontologies==0.1.2 2022-08-17T00:12:03,726 Created temporary directory: /tmp/pip-unpack-vf9okivt 2022-08-17T00:12:04,222 Downloading bioontologies-0.1.2.tar.gz (21 kB) 2022-08-17T00:12:04,365 Added bioontologies==0.1.2 from https://files.pythonhosted.org/packages/fd/4e/dde985f17ac6586c578ab9d42be5de724a700215d138d4f3b37cc3016af5/bioontologies-0.1.2.tar.gz#sha256=1a3b2ae21b282314a10c09e584fbe6ce70dbfb522031bd6af9b8b44fcf6f963a to build tracker '/tmp/pip-build-tracker-p_3ng601' 2022-08-17T00:12:04,375 Created temporary directory: /tmp/pip-build-env-k4oir7y5 2022-08-17T00:12:04,389 Created temporary directory: /tmp/pip-standalone-pip-dz5zg2_9 2022-08-17T00:12:06,567 Installing build dependencies: started 2022-08-17T00:12:06,569 Running command pip subprocess to install build dependencies 2022-08-17T00:12:16,350 Using pip 22.1.2 from /tmp/pip-standalone-pip-dz5zg2_9/__env_pip__.zip/pip (python 3.7) 2022-08-17T00:12:18,203 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-17T00:12:22,553 Collecting setuptools 2022-08-17T00:12:22,829 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.0.1-py3-none-any.whl (1.2 MB) 2022-08-17T00:12:23,487 Collecting wheel 2022-08-17T00:12:23,523 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-08-17T00:12:34,402 Installing collected packages: wheel, setuptools 2022-08-17T00:12:34,674 Creating /tmp/pip-build-env-k4oir7y5/overlay/bin 2022-08-17T00:12:34,679 changing mode of /tmp/pip-build-env-k4oir7y5/overlay/bin/wheel to 755 2022-08-17T00:12:39,522 Successfully installed setuptools-65.0.1 wheel-0.37.1 2022-08-17T00:12:39,758 --- Logging error --- 2022-08-17T00:12:39,759 Traceback (most recent call last): 2022-08-17T00:12:39,759 File "/tmp/pip-standalone-pip-dz5zg2_9/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-08-17T00:12:39,759 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-08-17T00:12:39,760 File "/tmp/pip-standalone-pip-dz5zg2_9/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-08-17T00:12:39,760 extend(render(renderable, render_options)) 2022-08-17T00:12:39,760 File "/tmp/pip-standalone-pip-dz5zg2_9/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-08-17T00:12:39,761 for render_output in iter_render: 2022-08-17T00:12:39,761 File "/tmp/pip-standalone-pip-dz5zg2_9/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-08-17T00:12:39,761 for line in lines: 2022-08-17T00:12:39,762 File "/tmp/pip-standalone-pip-dz5zg2_9/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-08-17T00:12:39,762 for segment in segments: 2022-08-17T00:12:39,762 File "/tmp/pip-standalone-pip-dz5zg2_9/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-08-17T00:12:39,763 renderable = rich_cast(renderable) 2022-08-17T00:12:39,763 File "/tmp/pip-standalone-pip-dz5zg2_9/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-08-17T00:12:39,763 renderable = cast_method() 2022-08-17T00:12:39,764 File "/tmp/pip-standalone-pip-dz5zg2_9/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-08-17T00:12:39,764 pip_cmd = get_best_invocation_for_this_pip() 2022-08-17T00:12:39,764 File "/tmp/pip-standalone-pip-dz5zg2_9/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 60, in get_best_invocation_for_this_pip 2022-08-17T00:12:39,765 os.path.join(binary_prefix, exe_name), 2022-08-17T00:12:39,765 File "/usr/lib/python3.7/genericpath.py", line 97, in samefile 2022-08-17T00:12:39,765 s2 = os.stat(f2) 2022-08-17T00:12:39,766 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.7' 2022-08-17T00:12:39,766 Call stack: 2022-08-17T00:12:39,766 File "/usr/lib/python3.7/runpy.py", line 193, in _run_module_as_main 2022-08-17T00:12:39,767 "__main__", mod_spec) 2022-08-17T00:12:39,767 File "/usr/lib/python3.7/runpy.py", line 85, in _run_code 2022-08-17T00:12:39,767 exec(code, run_globals) 2022-08-17T00:12:39,767 File "/tmp/pip-standalone-pip-dz5zg2_9/__env_pip__.zip/pip/__main__.py", line 31, in 2022-08-17T00:12:39,768 sys.exit(_main()) 2022-08-17T00:12:39,768 File "/tmp/pip-standalone-pip-dz5zg2_9/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-08-17T00:12:39,769 return command.main(cmd_args) 2022-08-17T00:12:39,769 File "/tmp/pip-standalone-pip-dz5zg2_9/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-08-17T00:12:39,769 return self._main(args) 2022-08-17T00:12:39,769 File "/tmp/pip-standalone-pip-dz5zg2_9/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-08-17T00:12:39,770 self.handle_pip_version_check(options) 2022-08-17T00:12:39,770 File "/tmp/pip-standalone-pip-dz5zg2_9/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-08-17T00:12:39,770 pip_self_version_check(session, options) 2022-08-17T00:12:39,771 File "/tmp/pip-standalone-pip-dz5zg2_9/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-08-17T00:12:39,771 logger.info("[present-rich] %s", upgrade_prompt) 2022-08-17T00:12:39,771 File "/usr/lib/python3.7/logging/__init__.py", line 1383, in info 2022-08-17T00:12:39,772 self._log(INFO, msg, args, **kwargs) 2022-08-17T00:12:39,772 File "/usr/lib/python3.7/logging/__init__.py", line 1519, in _log 2022-08-17T00:12:39,772 self.handle(record) 2022-08-17T00:12:39,773 File "/usr/lib/python3.7/logging/__init__.py", line 1529, in handle 2022-08-17T00:12:39,773 self.callHandlers(record) 2022-08-17T00:12:39,773 File "/usr/lib/python3.7/logging/__init__.py", line 1591, in callHandlers 2022-08-17T00:12:39,774 hdlr.handle(record) 2022-08-17T00:12:39,774 File "/usr/lib/python3.7/logging/__init__.py", line 905, in handle 2022-08-17T00:12:39,774 self.emit(record) 2022-08-17T00:12:39,775 File "/tmp/pip-standalone-pip-dz5zg2_9/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-08-17T00:12:39,775 self.handleError(record) 2022-08-17T00:12:39,775 Message: '[present-rich] %s' 2022-08-17T00:12:39,776 Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),) 2022-08-17T00:12:40,251 Installing build dependencies: finished with status 'done' 2022-08-17T00:12:40,543 Getting requirements to build wheel: started 2022-08-17T00:12:40,545 Running command Getting requirements to build wheel 2022-08-17T00:12:46,001 running egg_info 2022-08-17T00:12:46,640 writing src/bioontologies.egg-info/PKG-INFO 2022-08-17T00:12:47,236 writing dependency_links to src/bioontologies.egg-info/dependency_links.txt 2022-08-17T00:12:49,023 writing entry points to src/bioontologies.egg-info/entry_points.txt 2022-08-17T00:12:50,214 writing requirements to src/bioontologies.egg-info/requires.txt 2022-08-17T00:12:50,814 writing top-level names to src/bioontologies.egg-info/top_level.txt 2022-08-17T00:12:51,532 reading manifest file 'src/bioontologies.egg-info/SOURCES.txt' 2022-08-17T00:12:51,541 reading manifest template 'MANIFEST.in' 2022-08-17T00:12:51,547 /usr/local/lib/python3.7/dist-packages/setuptools/config/setupcfg.py:459: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-08-17T00:12:51,548 warnings.warn(msg, warning_class) 2022-08-17T00:12:51,548 no previously-included directories found matching 'scripts' 2022-08-17T00:12:51,549 no previously-included directories found matching 'notebooks' 2022-08-17T00:12:51,550 no previously-included directories found matching 'tests/.pytest_cache' 2022-08-17T00:12:51,566 warning: no files found matching '*.png' under directory 'docs/source' 2022-08-17T00:12:51,568 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2022-08-17T00:12:51,570 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2022-08-17T00:12:51,571 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-08-17T00:12:51,572 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2022-08-17T00:12:51,573 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2022-08-17T00:12:51,575 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2022-08-17T00:12:51,576 warning: no previously-included files found matching 'tox.ini' 2022-08-17T00:12:51,577 warning: no previously-included files found matching '.flake8' 2022-08-17T00:12:51,577 warning: no previously-included files found matching '.bumpversion.cfg' 2022-08-17T00:12:51,578 warning: no previously-included files found matching '.readthedocs.yml' 2022-08-17T00:12:51,579 adding license file 'LICENSE' 2022-08-17T00:12:51,585 writing manifest file 'src/bioontologies.egg-info/SOURCES.txt' 2022-08-17T00:12:51,804 Getting requirements to build wheel: finished with status 'done' 2022-08-17T00:12:51,824 Created temporary directory: /tmp/pip-modern-metadata-avnwb4la 2022-08-17T00:12:51,830 Preparing metadata (pyproject.toml): started 2022-08-17T00:12:51,832 Running command Preparing metadata (pyproject.toml) 2022-08-17T00:12:56,444 running dist_info 2022-08-17T00:12:57,093 creating /tmp/pip-modern-metadata-avnwb4la/bioontologies.egg-info 2022-08-17T00:12:57,713 writing /tmp/pip-modern-metadata-avnwb4la/bioontologies.egg-info/PKG-INFO 2022-08-17T00:12:58,304 writing dependency_links to /tmp/pip-modern-metadata-avnwb4la/bioontologies.egg-info/dependency_links.txt 2022-08-17T00:13:00,065 writing entry points to /tmp/pip-modern-metadata-avnwb4la/bioontologies.egg-info/entry_points.txt 2022-08-17T00:13:01,240 writing requirements to /tmp/pip-modern-metadata-avnwb4la/bioontologies.egg-info/requires.txt 2022-08-17T00:13:01,829 writing top-level names to /tmp/pip-modern-metadata-avnwb4la/bioontologies.egg-info/top_level.txt 2022-08-17T00:13:01,832 writing manifest file '/tmp/pip-modern-metadata-avnwb4la/bioontologies.egg-info/SOURCES.txt' 2022-08-17T00:13:02,534 reading manifest file '/tmp/pip-modern-metadata-avnwb4la/bioontologies.egg-info/SOURCES.txt' 2022-08-17T00:13:02,537 reading manifest template 'MANIFEST.in' 2022-08-17T00:13:02,546 /usr/local/lib/python3.7/dist-packages/setuptools/config/setupcfg.py:459: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-08-17T00:13:02,547 warnings.warn(msg, warning_class) 2022-08-17T00:13:02,547 no previously-included directories found matching 'scripts' 2022-08-17T00:13:02,547 no previously-included directories found matching 'notebooks' 2022-08-17T00:13:02,548 no previously-included directories found matching 'tests/.pytest_cache' 2022-08-17T00:13:02,564 warning: no files found matching '*.png' under directory 'docs/source' 2022-08-17T00:13:02,566 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2022-08-17T00:13:02,567 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2022-08-17T00:13:02,568 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-08-17T00:13:02,569 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2022-08-17T00:13:02,570 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2022-08-17T00:13:02,571 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2022-08-17T00:13:02,572 warning: no previously-included files found matching 'tox.ini' 2022-08-17T00:13:02,573 warning: no previously-included files found matching '.flake8' 2022-08-17T00:13:02,574 warning: no previously-included files found matching '.bumpversion.cfg' 2022-08-17T00:13:02,575 warning: no previously-included files found matching '.readthedocs.yml' 2022-08-17T00:13:02,575 adding license file 'LICENSE' 2022-08-17T00:13:02,581 writing manifest file '/tmp/pip-modern-metadata-avnwb4la/bioontologies.egg-info/SOURCES.txt' 2022-08-17T00:13:02,583 creating '/tmp/pip-modern-metadata-avnwb4la/bioontologies-0.1.2.dist-info' 2022-08-17T00:13:03,054 Preparing metadata (pyproject.toml): finished with status 'done' 2022-08-17T00:13:03,070 Source in /tmp/pip-wheel-h05udta0/bioontologies_357250dff926443e909149bd88342b99 has version 0.1.2, which satisfies requirement bioontologies==0.1.2 from https://files.pythonhosted.org/packages/fd/4e/dde985f17ac6586c578ab9d42be5de724a700215d138d4f3b37cc3016af5/bioontologies-0.1.2.tar.gz#sha256=1a3b2ae21b282314a10c09e584fbe6ce70dbfb522031bd6af9b8b44fcf6f963a 2022-08-17T00:13:03,072 Removed bioontologies==0.1.2 from https://files.pythonhosted.org/packages/fd/4e/dde985f17ac6586c578ab9d42be5de724a700215d138d4f3b37cc3016af5/bioontologies-0.1.2.tar.gz#sha256=1a3b2ae21b282314a10c09e584fbe6ce70dbfb522031bd6af9b8b44fcf6f963a from build tracker '/tmp/pip-build-tracker-p_3ng601' 2022-08-17T00:13:03,087 Created temporary directory: /tmp/pip-unpack-d9yplzox 2022-08-17T00:13:03,089 Building wheels for collected packages: bioontologies 2022-08-17T00:13:03,098 Created temporary directory: /tmp/pip-wheel-78n162z0 2022-08-17T00:13:03,098 Destination directory: /tmp/pip-wheel-78n162z0 2022-08-17T00:13:03,103 Building wheel for bioontologies (pyproject.toml): started 2022-08-17T00:13:03,105 Running command Building wheel for bioontologies (pyproject.toml) 2022-08-17T00:13:07,320 running bdist_wheel 2022-08-17T00:13:08,541 running build 2022-08-17T00:13:08,541 running build_py 2022-08-17T00:13:09,169 creating build 2022-08-17T00:13:09,170 creating build/lib 2022-08-17T00:13:09,171 creating build/lib/bioontologies 2022-08-17T00:13:09,173 copying src/bioontologies/__init__.py -> build/lib/bioontologies 2022-08-17T00:13:09,177 copying src/bioontologies/cli.py -> build/lib/bioontologies 2022-08-17T00:13:09,181 copying src/bioontologies/version.py -> build/lib/bioontologies 2022-08-17T00:13:09,184 copying src/bioontologies/obograph.py -> build/lib/bioontologies 2022-08-17T00:13:09,189 copying src/bioontologies/robot.py -> build/lib/bioontologies 2022-08-17T00:13:09,193 copying src/bioontologies/__main__.py -> build/lib/bioontologies 2022-08-17T00:13:09,195 running egg_info 2022-08-17T00:13:10,465 writing src/bioontologies.egg-info/PKG-INFO 2022-08-17T00:13:11,053 writing dependency_links to src/bioontologies.egg-info/dependency_links.txt 2022-08-17T00:13:12,872 writing entry points to src/bioontologies.egg-info/entry_points.txt 2022-08-17T00:13:14,053 writing requirements to src/bioontologies.egg-info/requires.txt 2022-08-17T00:13:14,646 writing top-level names to src/bioontologies.egg-info/top_level.txt 2022-08-17T00:13:14,687 reading manifest file 'src/bioontologies.egg-info/SOURCES.txt' 2022-08-17T00:13:14,694 reading manifest template 'MANIFEST.in' 2022-08-17T00:13:14,700 /usr/local/lib/python3.7/dist-packages/setuptools/config/setupcfg.py:459: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-08-17T00:13:14,701 warnings.warn(msg, warning_class) 2022-08-17T00:13:14,701 no previously-included directories found matching 'scripts' 2022-08-17T00:13:14,702 no previously-included directories found matching 'notebooks' 2022-08-17T00:13:14,702 no previously-included directories found matching 'tests/.pytest_cache' 2022-08-17T00:13:14,719 warning: no files found matching '*.png' under directory 'docs/source' 2022-08-17T00:13:14,720 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2022-08-17T00:13:14,721 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2022-08-17T00:13:14,723 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-08-17T00:13:14,724 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2022-08-17T00:13:14,725 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2022-08-17T00:13:14,726 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2022-08-17T00:13:14,728 warning: no previously-included files found matching 'tox.ini' 2022-08-17T00:13:14,728 warning: no previously-included files found matching '.flake8' 2022-08-17T00:13:14,729 warning: no previously-included files found matching '.bumpversion.cfg' 2022-08-17T00:13:14,730 warning: no previously-included files found matching '.readthedocs.yml' 2022-08-17T00:13:14,731 adding license file 'LICENSE' 2022-08-17T00:13:14,737 writing manifest file 'src/bioontologies.egg-info/SOURCES.txt' 2022-08-17T00:13:14,741 copying src/bioontologies/py.typed -> build/lib/bioontologies 2022-08-17T00:13:16,010 installing to build/bdist.linux-armv7l/wheel 2022-08-17T00:13:16,010 running install 2022-08-17T00:13:16,071 running install_lib 2022-08-17T00:13:16,701 creating build/bdist.linux-armv7l 2022-08-17T00:13:16,702 creating build/bdist.linux-armv7l/wheel 2022-08-17T00:13:16,705 creating build/bdist.linux-armv7l/wheel/bioontologies 2022-08-17T00:13:16,707 copying build/lib/bioontologies/py.typed -> build/bdist.linux-armv7l/wheel/bioontologies 2022-08-17T00:13:16,711 copying build/lib/bioontologies/__init__.py -> build/bdist.linux-armv7l/wheel/bioontologies 2022-08-17T00:13:16,714 copying build/lib/bioontologies/cli.py -> build/bdist.linux-armv7l/wheel/bioontologies 2022-08-17T00:13:16,718 copying build/lib/bioontologies/version.py -> build/bdist.linux-armv7l/wheel/bioontologies 2022-08-17T00:13:16,721 copying build/lib/bioontologies/obograph.py -> build/bdist.linux-armv7l/wheel/bioontologies 2022-08-17T00:13:16,726 copying build/lib/bioontologies/robot.py -> build/bdist.linux-armv7l/wheel/bioontologies 2022-08-17T00:13:16,730 copying build/lib/bioontologies/__main__.py -> build/bdist.linux-armv7l/wheel/bioontologies 2022-08-17T00:13:16,733 running install_egg_info 2022-08-17T00:13:17,372 Copying src/bioontologies.egg-info to build/bdist.linux-armv7l/wheel/bioontologies-0.1.2-py3.7.egg-info 2022-08-17T00:13:17,400 running install_scripts 2022-08-17T00:13:17,592 creating build/bdist.linux-armv7l/wheel/bioontologies-0.1.2.dist-info/WHEEL 2022-08-17T00:13:17,596 creating '/tmp/pip-wheel-78n162z0/tmp667w_kyg/bioontologies-0.1.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-08-17T00:13:17,600 adding 'bioontologies/__init__.py' 2022-08-17T00:13:17,602 adding 'bioontologies/__main__.py' 2022-08-17T00:13:17,605 adding 'bioontologies/cli.py' 2022-08-17T00:13:17,611 adding 'bioontologies/obograph.py' 2022-08-17T00:13:17,613 adding 'bioontologies/py.typed' 2022-08-17T00:13:17,617 adding 'bioontologies/robot.py' 2022-08-17T00:13:17,619 adding 'bioontologies/version.py' 2022-08-17T00:13:17,624 adding 'bioontologies-0.1.2.dist-info/LICENSE' 2022-08-17T00:13:17,627 adding 'bioontologies-0.1.2.dist-info/METADATA' 2022-08-17T00:13:17,629 adding 'bioontologies-0.1.2.dist-info/WHEEL' 2022-08-17T00:13:17,631 adding 'bioontologies-0.1.2.dist-info/entry_points.txt' 2022-08-17T00:13:17,632 adding 'bioontologies-0.1.2.dist-info/top_level.txt' 2022-08-17T00:13:17,634 adding 'bioontologies-0.1.2.dist-info/RECORD' 2022-08-17T00:13:17,636 removing build/bdist.linux-armv7l/wheel 2022-08-17T00:13:17,904 Building wheel for bioontologies (pyproject.toml): finished with status 'done' 2022-08-17T00:13:17,916 Created wheel for bioontologies: filename=bioontologies-0.1.2-py3-none-any.whl size=15688 sha256=52be2ed3e28c13efdaa5197f792e041f4ba806c86259b176318a867a39bdb0d8 2022-08-17T00:13:17,919 Stored in directory: /tmp/pip-ephem-wheel-cache-l3wihg3k/wheels/88/ea/e9/fdf6bbcc6eca40331e758f24f5666816191f6c3df3e6eee2db 2022-08-17T00:13:17,944 Successfully built bioontologies 2022-08-17T00:13:17,952 Removed build tracker: '/tmp/pip-build-tracker-p_3ng601'