2022-08-17T04:37:25,820 Created temporary directory: /tmp/pip-ephem-wheel-cache-auitbqlv
2022-08-17T04:37:25,826 Created temporary directory: /tmp/pip-build-tracker-a82j9822
2022-08-17T04:37:25,827 Initialized build tracking at /tmp/pip-build-tracker-a82j9822
2022-08-17T04:37:25,827 Created build tracker: /tmp/pip-build-tracker-a82j9822
2022-08-17T04:37:25,827 Entered build tracker: /tmp/pip-build-tracker-a82j9822
2022-08-17T04:37:25,829 Created temporary directory: /tmp/pip-wheel-qia3ut5b
2022-08-17T04:37:25,900 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-08-17T04:37:25,908 2 location(s) to search for versions of aldy:
2022-08-17T04:37:25,908 * https://pypi.org/simple/aldy/
2022-08-17T04:37:25,908 * https://www.piwheels.org/simple/aldy/
2022-08-17T04:37:25,910 Fetching project page and analyzing links: https://pypi.org/simple/aldy/
2022-08-17T04:37:25,911 Getting page https://pypi.org/simple/aldy/
2022-08-17T04:37:25,914 Found index url https://pypi.org/simple
2022-08-17T04:37:26,110   Found link https://files.pythonhosted.org/packages/f3/56/784a829c0c2a294b9bdd158c5a0dc4227d878859319c2523f8eaa152ba5b/aldy-1.2.tar.gz#sha256=28c6a59a72c30ba4c68e4521e8a95bedc48d81ea3be5606209e0b0109347c04b (from https://pypi.org/simple/aldy/), version: 1.2
2022-08-17T04:37:26,111   Found link https://files.pythonhosted.org/packages/0b/1f/542b32f7a4ceb79eb616f270b003891428871d838c411e15bb17916952c6/aldy-2.0.tar.gz#sha256=d555bc4b030856fe18f3f93327af7678316b9da72b2ccd15680472c97480785c (from https://pypi.org/simple/aldy/), version: 2.0
2022-08-17T04:37:26,112   Found link https://files.pythonhosted.org/packages/79/d4/f42e18b2bca8994ed0246a180feeaeeae2e972390b49095dfb84aa4e4911/aldy-2.1.tar.gz#sha256=21caaff9feae2c827d230189da9c3f80e908604d08fc24bc1c3a03f580c82260 (from https://pypi.org/simple/aldy/), version: 2.1
2022-08-17T04:37:26,112   Found link https://files.pythonhosted.org/packages/c9/68/d3f6f322dbd13a3b7500d06239857616b2e6e11256b736494563068cdea9/aldy-2.2.tar.gz#sha256=a88b2b69bd2e431721bd92c4bd0ea8f08dbfaf69564290504f77d318d87305ee (from https://pypi.org/simple/aldy/), version: 2.2
2022-08-17T04:37:26,113   Found link https://files.pythonhosted.org/packages/fe/e4/755eab1c0e23e224434b0b8baa7fa43da142e31320da81b828203b2b447f/aldy-2.2.3.tar.gz#sha256=0998bddae4a3e8750b541deaec9e5331d1c45e6387173caea5f78e69aeac2ad8 (from https://pypi.org/simple/aldy/), version: 2.2.3
2022-08-17T04:37:26,114   Found link https://files.pythonhosted.org/packages/cd/ae/40fdb3bc55c1438e3e099c700a742ff09a77f9f5597bb5ba95c5b8bc58e6/aldy-2.2.6.tar.gz#sha256=31fdac1af67d0ac0480f22703cec47956fe953881a160cdb3a34471df1ecc381 (from https://pypi.org/simple/aldy/), version: 2.2.6
2022-08-17T04:37:26,115   Skipping link: No binaries permitted for aldy: https://files.pythonhosted.org/packages/c3/73/7747ac768306e140693252cab2859a6afbdb5e165568036e422b2e545509/aldy-3.0-py3-none-any.whl#sha256=a068b6007a6827ebf7a0395c4207751730ab6da5bc36ff83c472c563016c5ffc (from https://pypi.org/simple/aldy/)
2022-08-17T04:37:26,115   Found link https://files.pythonhosted.org/packages/a1/78/0d015db68e842c1f133c0dde67c548b77d00c1431c52b2e806c8d628ded5/aldy-3.0.tar.gz#sha256=036e24bf920daff280ceec06e2cfdfc62956946cbe565d51e8189ff6f33c4fc3 (from https://pypi.org/simple/aldy/), version: 3.0
2022-08-17T04:37:26,116   Skipping link: No binaries permitted for aldy: https://files.pythonhosted.org/packages/09/c7/6f3ca14b1705092104fd63fb1d07a31095191d83d4a2bbb43aa11c064c97/aldy-3.1-py3-none-any.whl#sha256=2f8b45fd60f8b0b20d801578ade67ddcc1a1ff997eb0df2308769448402909c9 (from https://pypi.org/simple/aldy/)
2022-08-17T04:37:26,117   Found link https://files.pythonhosted.org/packages/bb/b0/cbc3535d7c61e8d1c1876d77e1eaf7402c2470dc0c2d9eb9c5f7e7e6fa56/aldy-3.1.tar.gz#sha256=af71d26c760aa8bce1c49decefc97ab2db76f55520c979487b5f292cc6033952 (from https://pypi.org/simple/aldy/), version: 3.1
2022-08-17T04:37:26,117   Skipping link: No binaries permitted for aldy: https://files.pythonhosted.org/packages/ab/29/1a07d40d00c27b3b55b04bd19f31ee27feb3ff30cd2c4905c711084e9f87/aldy-3.2-py3-none-any.whl#sha256=7f63da713d5182a0172e2b048d665adaa10a9889edd97a2a6a495878129f63a3 (from https://pypi.org/simple/aldy/)
2022-08-17T04:37:26,118   Found link https://files.pythonhosted.org/packages/2f/9f/7da2ae87297a21d4d251698a8ff22dd4ef8fa9c8e844eb072109e6533273/aldy-3.2.tar.gz#sha256=cd82d39e44f85f68f501d9a71f0bae7aae7469f303c200738c061778e0ea77e2 (from https://pypi.org/simple/aldy/), version: 3.2
2022-08-17T04:37:26,119   Skipping link: No binaries permitted for aldy: https://files.pythonhosted.org/packages/e0/86/d5c21106a02d6db3d309ba7c99cc5f3e58b410208f9c679b0979465e3588/aldy-3.3-py3-none-any.whl#sha256=8236cab87aa389bf7b611844163a1973ba0f689c8224e958bde10e899bd0f9e3 (from https://pypi.org/simple/aldy/)
2022-08-17T04:37:26,119   Found link https://files.pythonhosted.org/packages/de/ba/f25b53a1016eaad2e823e95ccc98f5cadfe1f0113baf81aab81d2612b365/aldy-3.3.tar.gz#sha256=2fe8dab82024ffe576513599a69b07c8571b85ffd884a4510c237aef74c5e23e (from https://pypi.org/simple/aldy/), version: 3.3
2022-08-17T04:37:26,120   Skipping link: No binaries permitted for aldy: https://files.pythonhosted.org/packages/87/5c/5096e5c1ed16f8c34c46d15b531f80ffd2082136c9af8278a66095d7e37e/aldy-4.0-py3-none-any.whl#sha256=4f455a6eb41696e7c86cd6a60e9e32be3e497aaab22853b5de2270941348cc48 (from https://pypi.org/simple/aldy/)
2022-08-17T04:37:26,121   Found link https://files.pythonhosted.org/packages/fc/6f/b4c6cea869941fb936b5d93ceb5227518cc1b8e460f0997e99528da2a811/aldy-4.0.tar.gz#sha256=e3aa038593ebcff3b37321109df42e2dfec0c860b26aa7e5df77b5da599ce7ef (from https://pypi.org/simple/aldy/), version: 4.0
2022-08-17T04:37:26,121 Fetching project page and analyzing links: https://www.piwheels.org/simple/aldy/
2022-08-17T04:37:26,122 Getting page https://www.piwheels.org/simple/aldy/
2022-08-17T04:37:26,124 Found index url https://www.piwheels.org/simple
2022-08-17T04:37:26,350   Skipping link: No binaries permitted for aldy: https://www.piwheels.org/simple/aldy/aldy-3.3-py3-none-any.whl#sha256=8236cab87aa389bf7b611844163a1973ba0f689c8224e958bde10e899bd0f9e3 (from https://www.piwheels.org/simple/aldy/)
2022-08-17T04:37:26,351   Skipping link: No binaries permitted for aldy: https://www.piwheels.org/simple/aldy/aldy-3.2-py3-none-any.whl#sha256=7f63da713d5182a0172e2b048d665adaa10a9889edd97a2a6a495878129f63a3 (from https://www.piwheels.org/simple/aldy/)
2022-08-17T04:37:26,351   Skipping link: No binaries permitted for aldy: https://www.piwheels.org/simple/aldy/aldy-3.1-py3-none-any.whl#sha256=2f8b45fd60f8b0b20d801578ade67ddcc1a1ff997eb0df2308769448402909c9 (from https://www.piwheels.org/simple/aldy/)
2022-08-17T04:37:26,352   Skipping link: No binaries permitted for aldy: https://www.piwheels.org/simple/aldy/aldy-3.0-py3-none-any.whl#sha256=a068b6007a6827ebf7a0395c4207751730ab6da5bc36ff83c472c563016c5ffc (from https://www.piwheels.org/simple/aldy/)
2022-08-17T04:37:26,352   Skipping link: No binaries permitted for aldy: https://www.piwheels.org/simple/aldy/aldy-2.2.6-py3-none-any.whl#sha256=7b7d2312861ec659d3cd55e6cea3072b6bee33118dabad166a45ded9b80a43e6 (from https://www.piwheels.org/simple/aldy/)
2022-08-17T04:37:26,353   Skipping link: No binaries permitted for aldy: https://www.piwheels.org/simple/aldy/aldy-2.2.3-py3-none-any.whl#sha256=686960a5258382ddbae8cbdf991b56a760e5717b3c4687c0aea51f006edcf32f (from https://www.piwheels.org/simple/aldy/)
2022-08-17T04:37:26,353   Skipping link: No binaries permitted for aldy: https://www.piwheels.org/simple/aldy/aldy-2.2-py3-none-any.whl#sha256=73d7399e905db8cba77cc25646636b0f8f80173bc7a40987359d05c223e5837e (from https://www.piwheels.org/simple/aldy/)
2022-08-17T04:37:26,354   Skipping link: No binaries permitted for aldy: https://www.piwheels.org/simple/aldy/aldy-2.1-py3-none-any.whl#sha256=c5811f8933970804d32480b40f7119204a6cd1d407067c80e40a84bfaffd4e58 (from https://www.piwheels.org/simple/aldy/)
2022-08-17T04:37:26,354   Skipping link: No binaries permitted for aldy: https://www.piwheels.org/simple/aldy/aldy-2.0-py3-none-any.whl#sha256=acd11ffdd277b20703496942a1664b6b2f2f73da9dbcaf0e7bf0d5aa7a05ffb2 (from https://www.piwheels.org/simple/aldy/)
2022-08-17T04:37:26,355   Skipping link: No binaries permitted for aldy: https://www.piwheels.org/simple/aldy/aldy-1.2-py3-none-any.whl#sha256=adbc108b51952fdd4f75ea1243f2cdd914cd4520afa6be062e550c9a40948dfb (from https://www.piwheels.org/simple/aldy/)
2022-08-17T04:37:26,355 Skipping link: not a file: https://www.piwheels.org/simple/aldy/
2022-08-17T04:37:26,356 Skipping link: not a file: https://pypi.org/simple/aldy/
2022-08-17T04:37:26,393 Given no hashes to check 1 links for project 'aldy': discarding no candidates
2022-08-17T04:37:26,424 Collecting aldy==4.0
2022-08-17T04:37:26,429   Created temporary directory: /tmp/pip-unpack-7i31m2ha
2022-08-17T04:37:26,525   Downloading aldy-4.0.tar.gz (6.6 MB)
2022-08-17T04:37:29,347   Added aldy==4.0 from https://files.pythonhosted.org/packages/fc/6f/b4c6cea869941fb936b5d93ceb5227518cc1b8e460f0997e99528da2a811/aldy-4.0.tar.gz#sha256=e3aa038593ebcff3b37321109df42e2dfec0c860b26aa7e5df77b5da599ce7ef to build tracker '/tmp/pip-build-tracker-a82j9822'
2022-08-17T04:37:29,350   Running setup.py (path:/tmp/pip-wheel-qia3ut5b/aldy_fa95b565abde400ba2ee35301ae2431c/setup.py) egg_info for package aldy
2022-08-17T04:37:29,351   Created temporary directory: /tmp/pip-pip-egg-info-c6rphhfj
2022-08-17T04:37:29,352   Preparing metadata (setup.py): started
2022-08-17T04:37:29,354   Running command python setup.py egg_info
2022-08-17T04:37:38,187   running egg_info
2022-08-17T04:37:38,192   creating /tmp/pip-pip-egg-info-c6rphhfj/aldy.egg-info
2022-08-17T04:37:38,929   writing /tmp/pip-pip-egg-info-c6rphhfj/aldy.egg-info/PKG-INFO
2022-08-17T04:37:39,530   writing dependency_links to /tmp/pip-pip-egg-info-c6rphhfj/aldy.egg-info/dependency_links.txt
2022-08-17T04:37:41,318   writing entry points to /tmp/pip-pip-egg-info-c6rphhfj/aldy.egg-info/entry_points.txt
2022-08-17T04:37:42,509   writing requirements to /tmp/pip-pip-egg-info-c6rphhfj/aldy.egg-info/requires.txt
2022-08-17T04:37:43,106   writing top-level names to /tmp/pip-pip-egg-info-c6rphhfj/aldy.egg-info/top_level.txt
2022-08-17T04:37:43,109   writing manifest file '/tmp/pip-pip-egg-info-c6rphhfj/aldy.egg-info/SOURCES.txt'
2022-08-17T04:37:44,237   reading manifest file '/tmp/pip-pip-egg-info-c6rphhfj/aldy.egg-info/SOURCES.txt'
2022-08-17T04:37:44,254   writing manifest file '/tmp/pip-pip-egg-info-c6rphhfj/aldy.egg-info/SOURCES.txt'
2022-08-17T04:37:44,475   Preparing metadata (setup.py): finished with status 'done'
2022-08-17T04:37:44,485   Source in /tmp/pip-wheel-qia3ut5b/aldy_fa95b565abde400ba2ee35301ae2431c has version 4.0, which satisfies requirement aldy==4.0 from https://files.pythonhosted.org/packages/fc/6f/b4c6cea869941fb936b5d93ceb5227518cc1b8e460f0997e99528da2a811/aldy-4.0.tar.gz#sha256=e3aa038593ebcff3b37321109df42e2dfec0c860b26aa7e5df77b5da599ce7ef
2022-08-17T04:37:44,487   Removed aldy==4.0 from https://files.pythonhosted.org/packages/fc/6f/b4c6cea869941fb936b5d93ceb5227518cc1b8e460f0997e99528da2a811/aldy-4.0.tar.gz#sha256=e3aa038593ebcff3b37321109df42e2dfec0c860b26aa7e5df77b5da599ce7ef from build tracker '/tmp/pip-build-tracker-a82j9822'
2022-08-17T04:37:44,495 Created temporary directory: /tmp/pip-unpack-46pe1fpy
2022-08-17T04:37:44,497 Building wheels for collected packages: aldy
2022-08-17T04:37:44,506   Created temporary directory: /tmp/pip-wheel-9m6mc9z1
2022-08-17T04:37:44,507   Building wheel for aldy (setup.py): started
2022-08-17T04:37:44,509   Destination directory: /tmp/pip-wheel-9m6mc9z1
2022-08-17T04:37:44,509   Running command python setup.py bdist_wheel
2022-08-17T04:37:52,840   running bdist_wheel
2022-08-17T04:37:53,257   running build
2022-08-17T04:37:53,258   running build_py
2022-08-17T04:37:53,991   creating build
2022-08-17T04:37:53,993   creating build/lib
2022-08-17T04:37:53,993   creating build/lib/aldy
2022-08-17T04:37:53,996   copying aldy/minor.py -> build/lib/aldy
2022-08-17T04:37:54,001   copying aldy/diplotype.py -> build/lib/aldy
2022-08-17T04:37:54,005   copying aldy/coverage.py -> build/lib/aldy
2022-08-17T04:37:54,010   copying aldy/__init__.py -> build/lib/aldy
2022-08-17T04:37:54,013   copying aldy/gene.py -> build/lib/aldy
2022-08-17T04:37:54,018   copying aldy/query.py -> build/lib/aldy
2022-08-17T04:37:54,022   copying aldy/cn.py -> build/lib/aldy
2022-08-17T04:37:54,027   copying aldy/version.py -> build/lib/aldy
2022-08-17T04:37:54,030   copying aldy/major.py -> build/lib/aldy
2022-08-17T04:37:54,034   copying aldy/solutions.py -> build/lib/aldy
2022-08-17T04:37:54,038   copying aldy/sam.py -> build/lib/aldy
2022-08-17T04:37:54,045   copying aldy/lpinterface.py -> build/lib/aldy
2022-08-17T04:37:54,049   copying aldy/__main__.py -> build/lib/aldy
2022-08-17T04:37:54,054   copying aldy/genotype.py -> build/lib/aldy
2022-08-17T04:37:54,058   copying aldy/common.py -> build/lib/aldy
2022-08-17T04:37:54,062   copying aldy/profile.py -> build/lib/aldy
2022-08-17T04:37:54,068   creating build/lib/aldy/tests
2022-08-17T04:37:54,070   copying aldy/tests/__init__.py -> build/lib/aldy/tests
2022-08-17T04:37:54,073   copying aldy/tests/test_diplotype_synthetic.py -> build/lib/aldy/tests
2022-08-17T04:37:54,077   copying aldy/tests/test_minor_synthetic.py -> build/lib/aldy/tests
2022-08-17T04:37:54,081   copying aldy/tests/test_gene.py -> build/lib/aldy/tests
2022-08-17T04:37:54,085   copying aldy/tests/test_major_synthetic.py -> build/lib/aldy/tests
2022-08-17T04:37:54,089   copying aldy/tests/test_cn_synthetic.py -> build/lib/aldy/tests
2022-08-17T04:37:54,093   copying aldy/tests/conftest.py -> build/lib/aldy/tests
2022-08-17T04:37:54,096   copying aldy/tests/test_minor_real.py -> build/lib/aldy/tests
2022-08-17T04:37:54,101   copying aldy/tests/test_full.py -> build/lib/aldy/tests
2022-08-17T04:37:54,105   copying aldy/tests/test_major_real.py -> build/lib/aldy/tests
2022-08-17T04:37:54,109   copying aldy/tests/test_diplotype_real.py -> build/lib/aldy/tests
2022-08-17T04:37:54,113   copying aldy/tests/test_query.py -> build/lib/aldy/tests
2022-08-17T04:37:54,116   copying aldy/tests/test_cn_real.py -> build/lib/aldy/tests
2022-08-17T04:37:54,121   creating build/lib/aldy/resources
2022-08-17T04:37:54,122   copying aldy/resources/__init__.py -> build/lib/aldy/resources
2022-08-17T04:37:54,127   creating build/lib/aldy/tests/resources
2022-08-17T04:37:54,128   copying aldy/tests/resources/__init__.py -> build/lib/aldy/tests/resources
2022-08-17T04:37:54,133   creating build/lib/aldy/resources/genes
2022-08-17T04:37:54,134   copying aldy/resources/genes/__init__.py -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,139   creating build/lib/aldy/resources/profiles
2022-08-17T04:37:54,140   copying aldy/resources/profiles/__init__.py -> build/lib/aldy/resources/profiles
2022-08-17T04:37:54,205   copying aldy/resources/LICENSE.rst -> build/lib/aldy/resources
2022-08-17T04:37:54,210   copying aldy/tests/resources/NA10860_hg38.bai -> build/lib/aldy/tests/resources
2022-08-17T04:37:54,215   copying aldy/tests/resources/NA10860.bai -> build/lib/aldy/tests/resources
2022-08-17T04:37:54,231   copying aldy/tests/resources/NA10860.bam -> build/lib/aldy/tests/resources
2022-08-17T04:37:54,317   copying aldy/tests/resources/NA10860_hg38.bam -> build/lib/aldy/tests/resources
2022-08-17T04:37:54,417   copying aldy/tests/resources/NA10860.vcf.expected -> build/lib/aldy/tests/resources
2022-08-17T04:37:54,420   copying aldy/tests/resources/NA10860.out.expected -> build/lib/aldy/tests/resources
2022-08-17T04:37:54,424   copying aldy/tests/resources/toy.yml -> build/lib/aldy/tests/resources
2022-08-17T04:37:54,428   copying aldy/tests/resources/NA10860.profile -> build/lib/aldy/tests/resources
2022-08-17T04:37:54,433   copying aldy/tests/resources/HARD.dump.tar.gz -> build/lib/aldy/tests/resources
2022-08-17T04:37:54,464   copying aldy/tests/resources/INS.dump.tar.gz -> build/lib/aldy/tests/resources
2022-08-17T04:37:54,504   copying aldy/tests/resources/NA07000_SLCO1B1.vcf.gz -> build/lib/aldy/tests/resources
2022-08-17T04:37:54,512   copying aldy/tests/resources/NA07000_SLCO1B1.vcf.gz.tbi -> build/lib/aldy/tests/resources
2022-08-17T04:37:54,516   copying aldy/resources/genes/cyp2a6.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,523   copying aldy/resources/genes/cyp2j2.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,530   copying aldy/resources/genes/pharma-cyp3a43.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,537   copying aldy/resources/genes/pharma-cyp2f1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,543   copying aldy/resources/genes/cyp3a7.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,549   copying aldy/resources/genes/cyp3a5.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,555   copying aldy/resources/genes/pharma-cyp3a5.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,562   copying aldy/resources/genes/gstp1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,567   copying aldy/resources/genes/pharma-nudt15.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,572   copying aldy/resources/genes/ifnl3.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,577   copying aldy/resources/genes/pharma-cyp2e1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,583   copying aldy/resources/genes/gstm1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,588   copying aldy/resources/genes/pharma-ugt1a1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,604   copying aldy/resources/genes/pharma-slco1b1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,616   copying aldy/resources/genes/pharma-cyp2d6.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,622   copying aldy/resources/genes/pharma-cyp3a7.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,628   copying aldy/resources/genes/pharma-g6pd.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,635   copying aldy/resources/genes/pharma-cyp1a1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,640   copying aldy/resources/genes/comt.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,646   copying aldy/resources/genes/tpmt.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,653   copying aldy/resources/genes/pharma-dpyd.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,704   copying aldy/resources/genes/nat1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,712   copying aldy/resources/genes/pharma-comt.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,719   copying aldy/resources/genes/cyp2a13.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,724   copying aldy/resources/genes/pharma-gstm1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,729   copying aldy/resources/genes/pharma-cyp4f2.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,735   copying aldy/resources/genes/vkorc1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,739   copying aldy/resources/genes/pharma-cftr.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,757   copying aldy/resources/genes/cyp3a4.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,764   copying aldy/resources/genes/cyp3a43.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,771   copying aldy/resources/genes/pharma-cyp2s1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,776   copying aldy/resources/genes/g6pd.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,783   copying aldy/resources/genes/pharma-cyp2b6.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,790   copying aldy/resources/genes/cyp1a2.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,796   copying aldy/resources/genes/cyp2e1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,801   copying aldy/resources/genes/cyp2w1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,806   copying aldy/resources/genes/slco1b1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,817   copying aldy/resources/genes/ugt1a1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,831   copying aldy/resources/genes/cyp4f2.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,837   copying aldy/resources/genes/pharma-ifnl3.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,842   copying aldy/resources/genes/pharma-cyp1a2.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,847   copying aldy/resources/genes/cyp2d6.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,861   copying aldy/resources/genes/pharma-vkorc1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,866   copying aldy/resources/genes/pharma-nat2.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,872   copying aldy/resources/genes/pharma-tpmt.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,878   copying aldy/resources/genes/pharma-cyp2c9.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,886   copying aldy/resources/genes/pharma-cyp2c8.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,892   copying aldy/resources/genes/pharma-cyp2j2.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,900   copying aldy/resources/genes/pharma-cyp2a6.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,905   copying aldy/resources/genes/cyp1a1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,910   copying aldy/resources/genes/cyp2r1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,915   copying aldy/resources/genes/pharma-cyp2a13.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,921   copying aldy/resources/genes/pharma-nat1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,931   copying aldy/resources/genes/cyp2c9.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,941   copying aldy/resources/genes/dpyd.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:54,996   copying aldy/resources/genes/cyp2c19.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:55,042   copying aldy/resources/genes/nudt15.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:55,047   copying aldy/resources/genes/cyp2s1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:55,053   copying aldy/resources/genes/ugt2b7.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:55,060   copying aldy/resources/genes/pharma-ugt2b7.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:55,068   copying aldy/resources/genes/cyp2b6.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:55,077   copying aldy/resources/genes/nat2.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:55,085   copying aldy/resources/genes/cyp2f1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:55,092   copying aldy/resources/genes/cftr.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:55,112   copying aldy/resources/genes/cyp2c8.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:55,122   copying aldy/resources/genes/pharma-cyp2c19.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:55,134   copying aldy/resources/genes/pharma-cyp3a4.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:55,141   copying aldy/resources/genes/pharma-gstp1.yml -> build/lib/aldy/resources/genes
2022-08-17T04:37:55,146   copying aldy/resources/profiles/pgx1.yml -> build/lib/aldy/resources/profiles
2022-08-17T04:37:55,151   copying aldy/resources/profiles/pgx2.yml -> build/lib/aldy/resources/profiles
2022-08-17T04:37:55,155   copying aldy/resources/profiles/pacbio-hifi-targeted-twist.yml -> build/lib/aldy/resources/profiles
2022-08-17T04:37:55,160   copying aldy/resources/profiles/10x.yml -> build/lib/aldy/resources/profiles
2022-08-17T04:37:55,165   copying aldy/resources/profiles/pacbio-hifi-targeted.yml -> build/lib/aldy/resources/profiles
2022-08-17T04:37:55,170   copying aldy/resources/profiles/pgx3.yml -> build/lib/aldy/resources/profiles
2022-08-17T04:37:55,175   copying aldy/resources/profiles/illumina.yml -> build/lib/aldy/resources/profiles
2022-08-17T04:37:55,973   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-08-17T04:37:55,974     setuptools.SetuptoolsDeprecationWarning,
2022-08-17T04:37:56,712   installing to build/bdist.linux-armv7l/wheel
2022-08-17T04:37:56,713   running install
2022-08-17T04:37:56,777   running install_lib
2022-08-17T04:37:57,525   creating build/bdist.linux-armv7l
2022-08-17T04:37:57,526   creating build/bdist.linux-armv7l/wheel
2022-08-17T04:37:57,529   creating build/bdist.linux-armv7l/wheel/aldy
2022-08-17T04:37:57,530   copying build/lib/aldy/minor.py -> build/bdist.linux-armv7l/wheel/aldy
2022-08-17T04:37:57,536   copying build/lib/aldy/diplotype.py -> build/bdist.linux-armv7l/wheel/aldy
2022-08-17T04:37:57,541   copying build/lib/aldy/coverage.py -> build/bdist.linux-armv7l/wheel/aldy
2022-08-17T04:37:57,545   copying build/lib/aldy/__init__.py -> build/bdist.linux-armv7l/wheel/aldy
2022-08-17T04:37:57,548   copying build/lib/aldy/gene.py -> build/bdist.linux-armv7l/wheel/aldy
2022-08-17T04:37:57,554   copying build/lib/aldy/query.py -> build/bdist.linux-armv7l/wheel/aldy
2022-08-17T04:37:57,558   copying build/lib/aldy/cn.py -> build/bdist.linux-armv7l/wheel/aldy
2022-08-17T04:37:57,563   copying build/lib/aldy/version.py -> build/bdist.linux-armv7l/wheel/aldy
2022-08-17T04:37:57,566   copying build/lib/aldy/major.py -> build/bdist.linux-armv7l/wheel/aldy
2022-08-17T04:37:57,572   creating build/bdist.linux-armv7l/wheel/aldy/tests
2022-08-17T04:37:57,573   copying build/lib/aldy/tests/__init__.py -> build/bdist.linux-armv7l/wheel/aldy/tests
2022-08-17T04:37:57,577   copying build/lib/aldy/tests/test_diplotype_synthetic.py -> build/bdist.linux-armv7l/wheel/aldy/tests
2022-08-17T04:37:57,580   copying build/lib/aldy/tests/test_minor_synthetic.py -> build/bdist.linux-armv7l/wheel/aldy/tests
2022-08-17T04:37:57,584   copying build/lib/aldy/tests/test_gene.py -> build/bdist.linux-armv7l/wheel/aldy/tests
2022-08-17T04:37:57,588   copying build/lib/aldy/tests/test_major_synthetic.py -> build/bdist.linux-armv7l/wheel/aldy/tests
2022-08-17T04:37:57,592   copying build/lib/aldy/tests/test_cn_synthetic.py -> build/bdist.linux-armv7l/wheel/aldy/tests
2022-08-17T04:37:57,596   copying build/lib/aldy/tests/conftest.py -> build/bdist.linux-armv7l/wheel/aldy/tests
2022-08-17T04:37:57,599   copying build/lib/aldy/tests/test_minor_real.py -> build/bdist.linux-armv7l/wheel/aldy/tests
2022-08-17T04:37:57,605   creating build/bdist.linux-armv7l/wheel/aldy/tests/resources
2022-08-17T04:37:57,606   copying build/lib/aldy/tests/resources/NA10860.bam -> build/bdist.linux-armv7l/wheel/aldy/tests/resources
2022-08-17T04:37:57,696   copying build/lib/aldy/tests/resources/__init__.py -> build/bdist.linux-armv7l/wheel/aldy/tests/resources
2022-08-17T04:37:57,700   copying build/lib/aldy/tests/resources/HARD.dump.tar.gz -> build/bdist.linux-armv7l/wheel/aldy/tests/resources
2022-08-17T04:37:57,732   copying build/lib/aldy/tests/resources/NA10860_hg38.bai -> build/bdist.linux-armv7l/wheel/aldy/tests/resources
2022-08-17T04:37:57,737   copying build/lib/aldy/tests/resources/NA10860.vcf.expected -> build/bdist.linux-armv7l/wheel/aldy/tests/resources
2022-08-17T04:37:57,741   copying build/lib/aldy/tests/resources/NA10860.out.expected -> build/bdist.linux-armv7l/wheel/aldy/tests/resources
2022-08-17T04:37:57,744   copying build/lib/aldy/tests/resources/NA10860.profile -> build/bdist.linux-armv7l/wheel/aldy/tests/resources
2022-08-17T04:37:57,748   copying build/lib/aldy/tests/resources/NA07000_SLCO1B1.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/aldy/tests/resources
2022-08-17T04:37:57,751   copying build/lib/aldy/tests/resources/INS.dump.tar.gz -> build/bdist.linux-armv7l/wheel/aldy/tests/resources
2022-08-17T04:37:57,793   copying build/lib/aldy/tests/resources/NA10860.bai -> build/bdist.linux-armv7l/wheel/aldy/tests/resources
2022-08-17T04:37:57,797   copying build/lib/aldy/tests/resources/NA07000_SLCO1B1.vcf.gz -> build/bdist.linux-armv7l/wheel/aldy/tests/resources
2022-08-17T04:37:57,806   copying build/lib/aldy/tests/resources/toy.yml -> build/bdist.linux-armv7l/wheel/aldy/tests/resources
2022-08-17T04:37:57,810   copying build/lib/aldy/tests/resources/NA10860_hg38.bam -> build/bdist.linux-armv7l/wheel/aldy/tests/resources
2022-08-17T04:37:57,894   copying build/lib/aldy/tests/test_full.py -> build/bdist.linux-armv7l/wheel/aldy/tests
2022-08-17T04:37:57,898   copying build/lib/aldy/tests/test_major_real.py -> build/bdist.linux-armv7l/wheel/aldy/tests
2022-08-17T04:37:57,902   copying build/lib/aldy/tests/test_diplotype_real.py -> build/bdist.linux-armv7l/wheel/aldy/tests
2022-08-17T04:37:57,906   copying build/lib/aldy/tests/test_query.py -> build/bdist.linux-armv7l/wheel/aldy/tests
2022-08-17T04:37:57,910   copying build/lib/aldy/tests/test_cn_real.py -> build/bdist.linux-armv7l/wheel/aldy/tests
2022-08-17T04:37:57,913   copying build/lib/aldy/solutions.py -> build/bdist.linux-armv7l/wheel/aldy
2022-08-17T04:37:57,918   creating build/bdist.linux-armv7l/wheel/aldy/resources
2022-08-17T04:37:57,920   copying build/lib/aldy/resources/__init__.py -> build/bdist.linux-armv7l/wheel/aldy/resources
2022-08-17T04:37:57,927   creating build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:57,928   copying build/lib/aldy/resources/genes/cyp2a6.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:57,935   copying build/lib/aldy/resources/genes/cyp2j2.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:57,941   copying build/lib/aldy/resources/genes/pharma-cyp3a43.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:57,949   copying build/lib/aldy/resources/genes/pharma-cyp2f1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:57,954   copying build/lib/aldy/resources/genes/cyp3a7.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:57,960   copying build/lib/aldy/resources/genes/cyp3a5.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:57,966   copying build/lib/aldy/resources/genes/__init__.py -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:57,969   copying build/lib/aldy/resources/genes/pharma-cyp3a5.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:57,975   copying build/lib/aldy/resources/genes/gstp1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:57,980   copying build/lib/aldy/resources/genes/pharma-nudt15.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:57,985   copying build/lib/aldy/resources/genes/ifnl3.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:57,989   copying build/lib/aldy/resources/genes/pharma-cyp2e1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:57,994   copying build/lib/aldy/resources/genes/gstm1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:57,999   copying build/lib/aldy/resources/genes/pharma-ugt1a1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,013   copying build/lib/aldy/resources/genes/pharma-slco1b1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,023   copying build/lib/aldy/resources/genes/pharma-cyp2d6.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,028   copying build/lib/aldy/resources/genes/pharma-cyp3a7.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,035   copying build/lib/aldy/resources/genes/pharma-g6pd.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,042   copying build/lib/aldy/resources/genes/pharma-cyp1a1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,046   copying build/lib/aldy/resources/genes/comt.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,052   copying build/lib/aldy/resources/genes/tpmt.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,058   copying build/lib/aldy/resources/genes/pharma-dpyd.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,108   copying build/lib/aldy/resources/genes/nat1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,115   copying build/lib/aldy/resources/genes/pharma-comt.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,121   copying build/lib/aldy/resources/genes/cyp2a13.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,126   copying build/lib/aldy/resources/genes/pharma-gstm1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,131   copying build/lib/aldy/resources/genes/pharma-cyp4f2.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,136   copying build/lib/aldy/resources/genes/vkorc1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,140   copying build/lib/aldy/resources/genes/pharma-cftr.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,157   copying build/lib/aldy/resources/genes/cyp3a4.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,163   copying build/lib/aldy/resources/genes/cyp3a43.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,170   copying build/lib/aldy/resources/genes/pharma-cyp2s1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,175   copying build/lib/aldy/resources/genes/g6pd.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,182   copying build/lib/aldy/resources/genes/pharma-cyp2b6.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,188   copying build/lib/aldy/resources/genes/cyp1a2.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,193   copying build/lib/aldy/resources/genes/cyp2e1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,198   copying build/lib/aldy/resources/genes/cyp2w1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,202   copying build/lib/aldy/resources/genes/slco1b1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,214   copying build/lib/aldy/resources/genes/ugt1a1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,227   copying build/lib/aldy/resources/genes/cyp4f2.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,232   copying build/lib/aldy/resources/genes/pharma-ifnl3.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,236   copying build/lib/aldy/resources/genes/pharma-cyp1a2.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,241   copying build/lib/aldy/resources/genes/cyp2d6.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,253   copying build/lib/aldy/resources/genes/pharma-vkorc1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,259   copying build/lib/aldy/resources/genes/pharma-nat2.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,264   copying build/lib/aldy/resources/genes/pharma-tpmt.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,271   copying build/lib/aldy/resources/genes/pharma-cyp2c9.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,279   copying build/lib/aldy/resources/genes/pharma-cyp2c8.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,285   copying build/lib/aldy/resources/genes/pharma-cyp2j2.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,292   copying build/lib/aldy/resources/genes/pharma-cyp2a6.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,296   copying build/lib/aldy/resources/genes/cyp1a1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,301   copying build/lib/aldy/resources/genes/cyp2r1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,307   copying build/lib/aldy/resources/genes/pharma-cyp2a13.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,312   copying build/lib/aldy/resources/genes/pharma-nat1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,320   copying build/lib/aldy/resources/genes/cyp2c9.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,328   copying build/lib/aldy/resources/genes/dpyd.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,397   copying build/lib/aldy/resources/genes/cyp2c19.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,407   copying build/lib/aldy/resources/genes/nudt15.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,413   copying build/lib/aldy/resources/genes/cyp2s1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,418   copying build/lib/aldy/resources/genes/ugt2b7.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,426   copying build/lib/aldy/resources/genes/pharma-ugt2b7.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,434   copying build/lib/aldy/resources/genes/cyp2b6.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,441   copying build/lib/aldy/resources/genes/nat2.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,446   copying build/lib/aldy/resources/genes/cyp2f1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,451   copying build/lib/aldy/resources/genes/cftr.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,468   copying build/lib/aldy/resources/genes/cyp2c8.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,474   copying build/lib/aldy/resources/genes/pharma-cyp2c19.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,484   copying build/lib/aldy/resources/genes/pharma-cyp3a4.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,490   copying build/lib/aldy/resources/genes/pharma-gstp1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes
2022-08-17T04:37:58,495   creating build/bdist.linux-armv7l/wheel/aldy/resources/profiles
2022-08-17T04:37:58,497   copying build/lib/aldy/resources/profiles/pgx1.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/profiles
2022-08-17T04:37:58,502   copying build/lib/aldy/resources/profiles/__init__.py -> build/bdist.linux-armv7l/wheel/aldy/resources/profiles
2022-08-17T04:37:58,505   copying build/lib/aldy/resources/profiles/pgx2.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/profiles
2022-08-17T04:37:58,509   copying build/lib/aldy/resources/profiles/pacbio-hifi-targeted-twist.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/profiles
2022-08-17T04:37:58,513   copying build/lib/aldy/resources/profiles/10x.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/profiles
2022-08-17T04:37:58,517   copying build/lib/aldy/resources/profiles/pacbio-hifi-targeted.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/profiles
2022-08-17T04:37:58,521   copying build/lib/aldy/resources/profiles/pgx3.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/profiles
2022-08-17T04:37:58,525   copying build/lib/aldy/resources/profiles/illumina.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/profiles
2022-08-17T04:37:58,529   copying build/lib/aldy/resources/LICENSE.rst -> build/bdist.linux-armv7l/wheel/aldy/resources
2022-08-17T04:37:58,532   copying build/lib/aldy/sam.py -> build/bdist.linux-armv7l/wheel/aldy
2022-08-17T04:37:58,538   copying build/lib/aldy/lpinterface.py -> build/bdist.linux-armv7l/wheel/aldy
2022-08-17T04:37:58,542   copying build/lib/aldy/__main__.py -> build/bdist.linux-armv7l/wheel/aldy
2022-08-17T04:37:58,546   copying build/lib/aldy/genotype.py -> build/bdist.linux-armv7l/wheel/aldy
2022-08-17T04:37:58,550   copying build/lib/aldy/common.py -> build/bdist.linux-armv7l/wheel/aldy
2022-08-17T04:37:58,554   copying build/lib/aldy/profile.py -> build/bdist.linux-armv7l/wheel/aldy
2022-08-17T04:37:58,557   running install_egg_info
2022-08-17T04:38:00,059   running egg_info
2022-08-17T04:38:00,789   writing aldy.egg-info/PKG-INFO
2022-08-17T04:38:01,379   writing dependency_links to aldy.egg-info/dependency_links.txt
2022-08-17T04:38:03,205   writing entry points to aldy.egg-info/entry_points.txt
2022-08-17T04:38:04,388   writing requirements to aldy.egg-info/requires.txt
2022-08-17T04:38:04,981   writing top-level names to aldy.egg-info/top_level.txt
2022-08-17T04:38:05,175   reading manifest file 'aldy.egg-info/SOURCES.txt'
2022-08-17T04:38:05,205   writing manifest file 'aldy.egg-info/SOURCES.txt'
2022-08-17T04:38:05,209   Copying aldy.egg-info to build/bdist.linux-armv7l/wheel/aldy-4.0-py3.7.egg-info
2022-08-17T04:38:05,234   running install_scripts
2022-08-17T04:38:05,393   creating build/bdist.linux-armv7l/wheel/aldy-4.0.dist-info/WHEEL
2022-08-17T04:38:05,398   creating '/tmp/pip-wheel-9m6mc9z1/aldy-4.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-08-17T04:38:05,403   adding 'aldy/__init__.py'
2022-08-17T04:38:05,409   adding 'aldy/__main__.py'
2022-08-17T04:38:05,415   adding 'aldy/cn.py'
2022-08-17T04:38:05,419   adding 'aldy/common.py'
2022-08-17T04:38:05,423   adding 'aldy/coverage.py'
2022-08-17T04:38:05,428   adding 'aldy/diplotype.py'
2022-08-17T04:38:05,437   adding 'aldy/gene.py'
2022-08-17T04:38:05,444   adding 'aldy/genotype.py'
2022-08-17T04:38:05,449   adding 'aldy/lpinterface.py'
2022-08-17T04:38:05,454   adding 'aldy/major.py'
2022-08-17T04:38:05,463   adding 'aldy/minor.py'
2022-08-17T04:38:05,468   adding 'aldy/profile.py'
2022-08-17T04:38:05,472   adding 'aldy/query.py'
2022-08-17T04:38:05,483   adding 'aldy/sam.py'
2022-08-17T04:38:05,487   adding 'aldy/solutions.py'
2022-08-17T04:38:05,490   adding 'aldy/version.py'
2022-08-17T04:38:05,495   adding 'aldy/resources/LICENSE.rst'
2022-08-17T04:38:05,498   adding 'aldy/resources/__init__.py'
2022-08-17T04:38:05,504   adding 'aldy/resources/genes/__init__.py'
2022-08-17T04:38:05,854   adding 'aldy/resources/genes/cftr.yml'
2022-08-17T04:38:05,905   adding 'aldy/resources/genes/comt.yml'
2022-08-17T04:38:05,922   adding 'aldy/resources/genes/cyp1a1.yml'
2022-08-17T04:38:05,942   adding 'aldy/resources/genes/cyp1a2.yml'
2022-08-17T04:38:05,962   adding 'aldy/resources/genes/cyp2a13.yml'
2022-08-17T04:38:05,984   adding 'aldy/resources/genes/cyp2a6.yml'
2022-08-17T04:38:06,030   adding 'aldy/resources/genes/cyp2b6.yml'
2022-08-17T04:38:06,159   adding 'aldy/resources/genes/cyp2c19.yml'
2022-08-17T04:38:06,215   adding 'aldy/resources/genes/cyp2c8.yml'
2022-08-17T04:38:06,296   adding 'aldy/resources/genes/cyp2c9.yml'
2022-08-17T04:38:06,329   adding 'aldy/resources/genes/cyp2d6.yml'
2022-08-17T04:38:06,357   adding 'aldy/resources/genes/cyp2e1.yml'
2022-08-17T04:38:06,383   adding 'aldy/resources/genes/cyp2f1.yml'
2022-08-17T04:38:06,437   adding 'aldy/resources/genes/cyp2j2.yml'
2022-08-17T04:38:06,466   adding 'aldy/resources/genes/cyp2r1.yml'
2022-08-17T04:38:06,493   adding 'aldy/resources/genes/cyp2s1.yml'
2022-08-17T04:38:06,509   adding 'aldy/resources/genes/cyp2w1.yml'
2022-08-17T04:38:06,556   adding 'aldy/resources/genes/cyp3a4.yml'
2022-08-17T04:38:06,615   adding 'aldy/resources/genes/cyp3a43.yml'
2022-08-17T04:38:06,668   adding 'aldy/resources/genes/cyp3a5.yml'
2022-08-17T04:38:06,719   adding 'aldy/resources/genes/cyp3a7.yml'
2022-08-17T04:38:06,754   adding 'aldy/resources/genes/cyp4f2.yml'
2022-08-17T04:38:07,925   adding 'aldy/resources/genes/dpyd.yml'
2022-08-17T04:38:07,976   adding 'aldy/resources/genes/g6pd.yml'
2022-08-17T04:38:07,993   adding 'aldy/resources/genes/gstm1.yml'
2022-08-17T04:38:08,005   adding 'aldy/resources/genes/gstp1.yml'
2022-08-17T04:38:08,015   adding 'aldy/resources/genes/ifnl3.yml'
2022-08-17T04:38:08,096   adding 'aldy/resources/genes/nat1.yml'
2022-08-17T04:38:08,121   adding 'aldy/resources/genes/nat2.yml'
2022-08-17T04:38:08,151   adding 'aldy/resources/genes/nudt15.yml'
2022-08-17T04:38:08,502   adding 'aldy/resources/genes/pharma-cftr.yml'
2022-08-17T04:38:08,553   adding 'aldy/resources/genes/pharma-comt.yml'
2022-08-17T04:38:08,569   adding 'aldy/resources/genes/pharma-cyp1a1.yml'
2022-08-17T04:38:08,588   adding 'aldy/resources/genes/pharma-cyp1a2.yml'
2022-08-17T04:38:08,606   adding 'aldy/resources/genes/pharma-cyp2a13.yml'
2022-08-17T04:38:08,626   adding 'aldy/resources/genes/pharma-cyp2a6.yml'
2022-08-17T04:38:08,671   adding 'aldy/resources/genes/pharma-cyp2b6.yml'
2022-08-17T04:38:08,799   adding 'aldy/resources/genes/pharma-cyp2c19.yml'
2022-08-17T04:38:08,854   adding 'aldy/resources/genes/pharma-cyp2c8.yml'
2022-08-17T04:38:08,935   adding 'aldy/resources/genes/pharma-cyp2c9.yml'
2022-08-17T04:38:08,950   adding 'aldy/resources/genes/pharma-cyp2d6.yml'
2022-08-17T04:38:08,974   adding 'aldy/resources/genes/pharma-cyp2e1.yml'
2022-08-17T04:38:09,000   adding 'aldy/resources/genes/pharma-cyp2f1.yml'
2022-08-17T04:38:09,054   adding 'aldy/resources/genes/pharma-cyp2j2.yml'
2022-08-17T04:38:09,080   adding 'aldy/resources/genes/pharma-cyp2s1.yml'
2022-08-17T04:38:09,127   adding 'aldy/resources/genes/pharma-cyp3a4.yml'
2022-08-17T04:38:09,186   adding 'aldy/resources/genes/pharma-cyp3a43.yml'
2022-08-17T04:38:09,238   adding 'aldy/resources/genes/pharma-cyp3a5.yml'
2022-08-17T04:38:09,290   adding 'aldy/resources/genes/pharma-cyp3a7.yml'
2022-08-17T04:38:09,325   adding 'aldy/resources/genes/pharma-cyp4f2.yml'
2022-08-17T04:38:10,488   adding 'aldy/resources/genes/pharma-dpyd.yml'
2022-08-17T04:38:10,538   adding 'aldy/resources/genes/pharma-g6pd.yml'
2022-08-17T04:38:10,555   adding 'aldy/resources/genes/pharma-gstm1.yml'
2022-08-17T04:38:10,566   adding 'aldy/resources/genes/pharma-gstp1.yml'
2022-08-17T04:38:10,576   adding 'aldy/resources/genes/pharma-ifnl3.yml'
2022-08-17T04:38:10,658   adding 'aldy/resources/genes/pharma-nat1.yml'
2022-08-17T04:38:10,683   adding 'aldy/resources/genes/pharma-nat2.yml'
2022-08-17T04:38:10,713   adding 'aldy/resources/genes/pharma-nudt15.yml'
2022-08-17T04:38:10,871   adding 'aldy/resources/genes/pharma-slco1b1.yml'
2022-08-17T04:38:10,917   adding 'aldy/resources/genes/pharma-tpmt.yml'
2022-08-17T04:38:11,167   adding 'aldy/resources/genes/pharma-ugt1a1.yml'
2022-08-17T04:38:11,256   adding 'aldy/resources/genes/pharma-ugt2b7.yml'
2022-08-17T04:38:11,269   adding 'aldy/resources/genes/pharma-vkorc1.yml'
2022-08-17T04:38:11,425   adding 'aldy/resources/genes/slco1b1.yml'
2022-08-17T04:38:11,471   adding 'aldy/resources/genes/tpmt.yml'
2022-08-17T04:38:11,722   adding 'aldy/resources/genes/ugt1a1.yml'
2022-08-17T04:38:11,811   adding 'aldy/resources/genes/ugt2b7.yml'
2022-08-17T04:38:11,825   adding 'aldy/resources/genes/vkorc1.yml'
2022-08-17T04:38:11,832   adding 'aldy/resources/profiles/10x.yml'
2022-08-17T04:38:11,835   adding 'aldy/resources/profiles/__init__.py'
2022-08-17T04:38:11,840   adding 'aldy/resources/profiles/illumina.yml'
2022-08-17T04:38:11,845   adding 'aldy/resources/profiles/pacbio-hifi-targeted-twist.yml'
2022-08-17T04:38:11,851   adding 'aldy/resources/profiles/pacbio-hifi-targeted.yml'
2022-08-17T04:38:11,857   adding 'aldy/resources/profiles/pgx1.yml'
2022-08-17T04:38:11,863   adding 'aldy/resources/profiles/pgx2.yml'
2022-08-17T04:38:11,870   adding 'aldy/resources/profiles/pgx3.yml'
2022-08-17T04:38:11,874   adding 'aldy/tests/__init__.py'
2022-08-17T04:38:11,877   adding 'aldy/tests/conftest.py'
2022-08-17T04:38:11,881   adding 'aldy/tests/test_cn_real.py'
2022-08-17T04:38:11,884   adding 'aldy/tests/test_cn_synthetic.py'
2022-08-17T04:38:11,887   adding 'aldy/tests/test_diplotype_real.py'
2022-08-17T04:38:11,891   adding 'aldy/tests/test_diplotype_synthetic.py'
2022-08-17T04:38:11,895   adding 'aldy/tests/test_full.py'
2022-08-17T04:38:11,899   adding 'aldy/tests/test_gene.py'
2022-08-17T04:38:11,903   adding 'aldy/tests/test_major_real.py'
2022-08-17T04:38:11,907   adding 'aldy/tests/test_major_synthetic.py'
2022-08-17T04:38:11,913   adding 'aldy/tests/test_minor_real.py'
2022-08-17T04:38:11,917   adding 'aldy/tests/test_minor_synthetic.py'
2022-08-17T04:38:11,921   adding 'aldy/tests/test_query.py'
2022-08-17T04:38:12,080   adding 'aldy/tests/resources/HARD.dump.tar.gz'
2022-08-17T04:38:12,294   adding 'aldy/tests/resources/INS.dump.tar.gz'
2022-08-17T04:38:12,335   adding 'aldy/tests/resources/NA07000_SLCO1B1.vcf.gz'
2022-08-17T04:38:12,340   adding 'aldy/tests/resources/NA07000_SLCO1B1.vcf.gz.tbi'
2022-08-17T04:38:12,345   adding 'aldy/tests/resources/NA10860.bai'
2022-08-17T04:38:12,841   adding 'aldy/tests/resources/NA10860.bam'
2022-08-17T04:38:12,881   adding 'aldy/tests/resources/NA10860.out.expected'
2022-08-17T04:38:12,884   adding 'aldy/tests/resources/NA10860.profile'
2022-08-17T04:38:12,888   adding 'aldy/tests/resources/NA10860.vcf.expected'
2022-08-17T04:38:12,892   adding 'aldy/tests/resources/NA10860_hg38.bai'
2022-08-17T04:38:13,385   adding 'aldy/tests/resources/NA10860_hg38.bam'
2022-08-17T04:38:13,423   adding 'aldy/tests/resources/__init__.py'
2022-08-17T04:38:13,426   adding 'aldy/tests/resources/toy.yml'
2022-08-17T04:38:13,430   adding 'aldy-4.0.dist-info/METADATA'
2022-08-17T04:38:13,432   adding 'aldy-4.0.dist-info/WHEEL'
2022-08-17T04:38:13,434   adding 'aldy-4.0.dist-info/entry_points.txt'
2022-08-17T04:38:13,435   adding 'aldy-4.0.dist-info/top_level.txt'
2022-08-17T04:38:13,439   adding 'aldy-4.0.dist-info/RECORD'
2022-08-17T04:38:13,637   removing build/bdist.linux-armv7l/wheel
2022-08-17T04:38:13,939   Building wheel for aldy (setup.py): finished with status 'done'
2022-08-17T04:38:14,143   Created wheel for aldy: filename=aldy-4.0-py3-none-any.whl size=6676746 sha256=a1788c2f762151608452c6f2e3abe0a9a280cc8e80159174fc33ea286b5886c9
2022-08-17T04:38:14,145   Stored in directory: /tmp/pip-ephem-wheel-cache-auitbqlv/wheels/f3/a0/95/969b915c470fdb08d2299bdfb75bb336654a757de6983d38f0
2022-08-17T04:38:14,183 Successfully built aldy
2022-08-17T04:38:14,634 Removed build tracker: '/tmp/pip-build-tracker-a82j9822'