2022-08-22T18:07:43,728 Created temporary directory: /tmp/pip-ephem-wheel-cache-lkc9nmz1
2022-08-22T18:07:43,733 Created temporary directory: /tmp/pip-build-tracker-heqeuegs
2022-08-22T18:07:43,734 Initialized build tracking at /tmp/pip-build-tracker-heqeuegs
2022-08-22T18:07:43,735 Created build tracker: /tmp/pip-build-tracker-heqeuegs
2022-08-22T18:07:43,735 Entered build tracker: /tmp/pip-build-tracker-heqeuegs
2022-08-22T18:07:43,736 Created temporary directory: /tmp/pip-wheel-f8ol0awh
2022-08-22T18:07:43,812 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-08-22T18:07:43,821 2 location(s) to search for versions of coppafish:
2022-08-22T18:07:43,821 * https://pypi.org/simple/coppafish/
2022-08-22T18:07:43,821 * https://www.piwheels.org/simple/coppafish/
2022-08-22T18:07:43,822 Fetching project page and analyzing links: https://pypi.org/simple/coppafish/
2022-08-22T18:07:43,823 Getting page https://pypi.org/simple/coppafish/
2022-08-22T18:07:43,826 Found index url https://pypi.org/simple
2022-08-22T18:07:43,948   Skipping link: No binaries permitted for coppafish: https://files.pythonhosted.org/packages/e9/73/6f328b727245a7251d65164be6ee4a76d7fd1adf87a968d7e21da367e795/coppafish-0.1.0-py3-none-any.whl#sha256=8dd52d97908f16a2f6a225945de7f97f8980b2cd01a9e3fe0adfed1e60568610 (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-22T18:07:43,950   Found link https://files.pythonhosted.org/packages/60/cf/5e979fb9e16482fdee00fcbfd16bcff74b90a1bcd6bbb7b5826e3a8df530/coppafish-0.1.0.tar.gz#sha256=27bdaebaf05e460d7d1fa165c57aeaaf5d6d3d5da4a3f3f440ae52b164f3da41 (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8), version: 0.1.0
2022-08-22T18:07:43,951   Skipping link: No binaries permitted for coppafish: https://files.pythonhosted.org/packages/fe/ba/c1f2893215fff630b6ac72f2c2b40c9c2bd872b68e1d61b3726fb5d311b3/coppafish-0.1.1-py3-none-any.whl#sha256=39ee446e654c947acb978e3b04045a77aeac95e218d670274fd7bc08ba8f5814 (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-22T18:07:43,952   Found link https://files.pythonhosted.org/packages/dc/be/b22d87837f76553d41be6e74dc30c3497709aebbd07d126f82c1a0de4812/coppafish-0.1.1.tar.gz#sha256=91806207a6be51fcde3bebfa715dbb34396eeccabe19f3b915119bd391a8ee10 (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8), version: 0.1.1
2022-08-22T18:07:43,953   Skipping link: No binaries permitted for coppafish: https://files.pythonhosted.org/packages/e1/46/89e58b37d74fee2680b5bc776d0559fa8fdf3caa83ec7f5874c2d80713db/coppafish-0.1.2-py3-none-any.whl#sha256=13265cb18b027ab750efc4fe916b4158140e747155bad07f296338d0df3d8b84 (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-22T18:07:43,954   Found link https://files.pythonhosted.org/packages/54/98/dd615cd49346eebd21228d40f7622c13f9f2d6bc1a9b3fc5099d84224a55/coppafish-0.1.2.tar.gz#sha256=676644625113060b0aa332eb73c1887da2ef71cb853e0c58e3219cf69dfb98cc (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8), version: 0.1.2
2022-08-22T18:07:43,955   Skipping link: No binaries permitted for coppafish: https://files.pythonhosted.org/packages/b0/7c/306b2f6a3f5f8bb17d4466f936423fc9ab67585ab477b056c653b70d4591/coppafish-0.1.3-py3-none-any.whl#sha256=dfff0aa689d6500e372646f36e1681103661ef650a72a3f0a6b9c380a24257bb (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-22T18:07:43,956   Found link https://files.pythonhosted.org/packages/a7/58/b11739cbb358beae6fa5070ce557d85e23906d56153bedfbbd65be0a826d/coppafish-0.1.3.tar.gz#sha256=c5c9da063c019771f6ea28d45e571952b92a8cbbb0f7dfd6f4c588a366f05188 (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8), version: 0.1.3
2022-08-22T18:07:43,957 Fetching project page and analyzing links: https://www.piwheels.org/simple/coppafish/
2022-08-22T18:07:43,958 Getting page https://www.piwheels.org/simple/coppafish/
2022-08-22T18:07:43,960 Found index url https://www.piwheels.org/simple
2022-08-22T18:07:44,175 Skipping link: not a file: https://www.piwheels.org/simple/coppafish/
2022-08-22T18:07:44,175 Skipping link: not a file: https://pypi.org/simple/coppafish/
2022-08-22T18:07:44,221 Given no hashes to check 1 links for project 'coppafish': discarding no candidates
2022-08-22T18:07:44,263 Collecting coppafish==0.1.2
2022-08-22T18:07:44,267   Created temporary directory: /tmp/pip-unpack-mo5qgg44
2022-08-22T18:07:44,361   Downloading coppafish-0.1.2.tar.gz (252 kB)
2022-08-22T18:07:45,189   Added coppafish==0.1.2 from https://files.pythonhosted.org/packages/54/98/dd615cd49346eebd21228d40f7622c13f9f2d6bc1a9b3fc5099d84224a55/coppafish-0.1.2.tar.gz#sha256=676644625113060b0aa332eb73c1887da2ef71cb853e0c58e3219cf69dfb98cc to build tracker '/tmp/pip-build-tracker-heqeuegs'
2022-08-22T18:07:45,193   Running setup.py (path:/tmp/pip-wheel-f8ol0awh/coppafish_78c88c5b830d4b45b6a5ee6a888267ea/setup.py) egg_info for package coppafish
2022-08-22T18:07:45,194   Created temporary directory: /tmp/pip-pip-egg-info-osq9lnb2
2022-08-22T18:07:45,194   Preparing metadata (setup.py): started
2022-08-22T18:07:45,197   Running command python setup.py egg_info
2022-08-22T18:07:52,607   running egg_info
2022-08-22T18:07:52,612   creating /tmp/pip-pip-egg-info-osq9lnb2/coppafish.egg-info
2022-08-22T18:07:53,251   writing /tmp/pip-pip-egg-info-osq9lnb2/coppafish.egg-info/PKG-INFO
2022-08-22T18:07:53,804   writing dependency_links to /tmp/pip-pip-egg-info-osq9lnb2/coppafish.egg-info/dependency_links.txt
2022-08-22T18:07:56,575   writing requirements to /tmp/pip-pip-egg-info-osq9lnb2/coppafish.egg-info/requires.txt
2022-08-22T18:07:57,137   writing top-level names to /tmp/pip-pip-egg-info-osq9lnb2/coppafish.egg-info/top_level.txt
2022-08-22T18:07:57,140   writing manifest file '/tmp/pip-pip-egg-info-osq9lnb2/coppafish.egg-info/SOURCES.txt'
2022-08-22T18:07:58,036   reading manifest file '/tmp/pip-pip-egg-info-osq9lnb2/coppafish.egg-info/SOURCES.txt'
2022-08-22T18:07:58,039   adding license file 'LICENSE.md'
2022-08-22T18:07:58,055   writing manifest file '/tmp/pip-pip-egg-info-osq9lnb2/coppafish.egg-info/SOURCES.txt'
2022-08-22T18:07:58,265   Preparing metadata (setup.py): finished with status 'done'
2022-08-22T18:07:58,276   Source in /tmp/pip-wheel-f8ol0awh/coppafish_78c88c5b830d4b45b6a5ee6a888267ea has version 0.1.2, which satisfies requirement coppafish==0.1.2 from https://files.pythonhosted.org/packages/54/98/dd615cd49346eebd21228d40f7622c13f9f2d6bc1a9b3fc5099d84224a55/coppafish-0.1.2.tar.gz#sha256=676644625113060b0aa332eb73c1887da2ef71cb853e0c58e3219cf69dfb98cc
2022-08-22T18:07:58,278   Removed coppafish==0.1.2 from https://files.pythonhosted.org/packages/54/98/dd615cd49346eebd21228d40f7622c13f9f2d6bc1a9b3fc5099d84224a55/coppafish-0.1.2.tar.gz#sha256=676644625113060b0aa332eb73c1887da2ef71cb853e0c58e3219cf69dfb98cc from build tracker '/tmp/pip-build-tracker-heqeuegs'
2022-08-22T18:07:58,291 Created temporary directory: /tmp/pip-unpack-j31k8ute
2022-08-22T18:07:58,292 Building wheels for collected packages: coppafish
2022-08-22T18:07:58,302   Created temporary directory: /tmp/pip-wheel-c5wt2r9d
2022-08-22T18:07:58,302   Building wheel for coppafish (setup.py): started
2022-08-22T18:07:58,304   Destination directory: /tmp/pip-wheel-c5wt2r9d
2022-08-22T18:07:58,305   Running command python setup.py bdist_wheel
2022-08-22T18:08:05,256   running bdist_wheel
2022-08-22T18:08:06,618   running build
2022-08-22T18:08:06,619   running build_py
2022-08-22T18:08:07,263   creating build
2022-08-22T18:08:07,263   creating build/lib
2022-08-22T18:08:07,265   creating build/lib/coppafish
2022-08-22T18:08:07,267   copying coppafish/_version.py -> build/lib/coppafish
2022-08-22T18:08:07,271   copying coppafish/__main__.py -> build/lib/coppafish
2022-08-22T18:08:07,274   copying coppafish/__init__.py -> build/lib/coppafish
2022-08-22T18:08:07,279   creating build/lib/coppafish/setup
2022-08-22T18:08:07,281   copying coppafish/setup/notebook.py -> build/lib/coppafish/setup
2022-08-22T18:08:07,287   copying coppafish/setup/tile_details.py -> build/lib/coppafish/setup
2022-08-22T18:08:07,291   copying coppafish/setup/file_names.py -> build/lib/coppafish/setup
2022-08-22T18:08:07,295   copying coppafish/setup/__init__.py -> build/lib/coppafish/setup
2022-08-22T18:08:07,298   copying coppafish/setup/config.py -> build/lib/coppafish/setup
2022-08-22T18:08:07,305   creating build/lib/coppafish/plot
2022-08-22T18:08:07,306   copying coppafish/plot/raw.py -> build/lib/coppafish/plot
2022-08-22T18:08:07,311   copying coppafish/plot/__init__.py -> build/lib/coppafish/plot
2022-08-22T18:08:07,315   creating build/lib/coppafish/spot_colors
2022-08-22T18:08:07,317   copying coppafish/spot_colors/base.py -> build/lib/coppafish/spot_colors
2022-08-22T18:08:07,322   copying coppafish/spot_colors/base_optimised.py -> build/lib/coppafish/spot_colors
2022-08-22T18:08:07,327   copying coppafish/spot_colors/__init__.py -> build/lib/coppafish/spot_colors
2022-08-22T18:08:07,332   creating build/lib/coppafish/stitch
2022-08-22T18:08:07,334   copying coppafish/stitch/tile_origin.py -> build/lib/coppafish/stitch
2022-08-22T18:08:07,338   copying coppafish/stitch/starting_shifts.py -> build/lib/coppafish/stitch
2022-08-22T18:08:07,341   copying coppafish/stitch/shift.py -> build/lib/coppafish/stitch
2022-08-22T18:08:07,348   copying coppafish/stitch/check_shifts.py -> build/lib/coppafish/stitch
2022-08-22T18:08:07,354   copying coppafish/stitch/__init__.py -> build/lib/coppafish/stitch
2022-08-22T18:08:07,357   creating build/lib/coppafish/find_spots
2022-08-22T18:08:07,359   copying coppafish/find_spots/base.py -> build/lib/coppafish/find_spots
2022-08-22T18:08:07,364   copying coppafish/find_spots/check_spots.py -> build/lib/coppafish/find_spots
2022-08-22T18:08:07,368   copying coppafish/find_spots/detect_optimised.py -> build/lib/coppafish/find_spots
2022-08-22T18:08:07,372   copying coppafish/find_spots/__init__.py -> build/lib/coppafish/find_spots
2022-08-22T18:08:07,376   copying coppafish/find_spots/detect.py -> build/lib/coppafish/find_spots
2022-08-22T18:08:07,381   creating build/lib/coppafish/extract
2022-08-22T18:08:07,383   copying coppafish/extract/base.py -> build/lib/coppafish/extract
2022-08-22T18:08:07,387   copying coppafish/extract/scale.py -> build/lib/coppafish/extract
2022-08-22T18:08:07,392   copying coppafish/extract/deconvolution.py -> build/lib/coppafish/extract
2022-08-22T18:08:07,396   copying coppafish/extract/fstack.py -> build/lib/coppafish/extract
2022-08-22T18:08:07,400   copying coppafish/extract/__init__.py -> build/lib/coppafish/extract
2022-08-22T18:08:07,405   creating build/lib/coppafish/register
2022-08-22T18:08:07,407   copying coppafish/register/check_transforms.py -> build/lib/coppafish/register
2022-08-22T18:08:07,411   copying coppafish/register/base.py -> build/lib/coppafish/register
2022-08-22T18:08:07,417   copying coppafish/register/__init__.py -> build/lib/coppafish/register
2022-08-22T18:08:07,422   creating build/lib/coppafish/omp
2022-08-22T18:08:07,424   copying coppafish/omp/coefs_optimised.py -> build/lib/coppafish/omp
2022-08-22T18:08:07,431   copying coppafish/omp/spots.py -> build/lib/coppafish/omp
2022-08-22T18:08:07,437   copying coppafish/omp/base.py -> build/lib/coppafish/omp
2022-08-22T18:08:07,440   copying coppafish/omp/coefs.py -> build/lib/coppafish/omp
2022-08-22T18:08:07,446   copying coppafish/omp/__init__.py -> build/lib/coppafish/omp
2022-08-22T18:08:07,451   creating build/lib/coppafish/call_spots
2022-08-22T18:08:07,453   copying coppafish/call_spots/qual_check.py -> build/lib/coppafish/call_spots
2022-08-22T18:08:07,458   copying coppafish/call_spots/base.py -> build/lib/coppafish/call_spots
2022-08-22T18:08:07,463   copying coppafish/call_spots/qual_check_optimised.py -> build/lib/coppafish/call_spots
2022-08-22T18:08:07,467   copying coppafish/call_spots/dot_product.py -> build/lib/coppafish/call_spots
2022-08-22T18:08:07,472   copying coppafish/call_spots/dot_product_optimised.py -> build/lib/coppafish/call_spots
2022-08-22T18:08:07,476   copying coppafish/call_spots/background.py -> build/lib/coppafish/call_spots
2022-08-22T18:08:07,479   copying coppafish/call_spots/__init__.py -> build/lib/coppafish/call_spots
2022-08-22T18:08:07,482   copying coppafish/call_spots/bleed_matrix.py -> build/lib/coppafish/call_spots
2022-08-22T18:08:07,488   copying coppafish/call_spots/background_optimised.py -> build/lib/coppafish/call_spots
2022-08-22T18:08:07,494   creating build/lib/coppafish/pipeline
2022-08-22T18:08:07,496   copying coppafish/pipeline/stitch.py -> build/lib/coppafish/pipeline
2022-08-22T18:08:07,501   copying coppafish/pipeline/basic_info.py -> build/lib/coppafish/pipeline
2022-08-22T18:08:07,505   copying coppafish/pipeline/get_reference_spots.py -> build/lib/coppafish/pipeline
2022-08-22T18:08:07,511   copying coppafish/pipeline/omp.py -> build/lib/coppafish/pipeline
2022-08-22T18:08:07,517   copying coppafish/pipeline/call_reference_spots.py -> build/lib/coppafish/pipeline
2022-08-22T18:08:07,523   copying coppafish/pipeline/register.py -> build/lib/coppafish/pipeline
2022-08-22T18:08:07,527   copying coppafish/pipeline/register_initial.py -> build/lib/coppafish/pipeline
2022-08-22T18:08:07,531   copying coppafish/pipeline/run.py -> build/lib/coppafish/pipeline
2022-08-22T18:08:07,536   copying coppafish/pipeline/find_spots.py -> build/lib/coppafish/pipeline
2022-08-22T18:08:07,540   copying coppafish/pipeline/extract_run.py -> build/lib/coppafish/pipeline
2022-08-22T18:08:07,545   copying coppafish/pipeline/__init__.py -> build/lib/coppafish/pipeline
2022-08-22T18:08:07,551   creating build/lib/coppafish/utils
2022-08-22T18:08:07,553   copying coppafish/utils/nd2.py -> build/lib/coppafish/utils
2022-08-22T18:08:07,558   copying coppafish/utils/base.py -> build/lib/coppafish/utils
2022-08-22T18:08:07,561   copying coppafish/utils/strel.py -> build/lib/coppafish/utils
2022-08-22T18:08:07,566   copying coppafish/utils/spot_images.py -> build/lib/coppafish/utils
2022-08-22T18:08:07,570   copying coppafish/utils/pciseq.py -> build/lib/coppafish/utils
2022-08-22T18:08:07,574   copying coppafish/utils/npy.py -> build/lib/coppafish/utils
2022-08-22T18:08:07,579   copying coppafish/utils/matlab.py -> build/lib/coppafish/utils
2022-08-22T18:08:07,583   copying coppafish/utils/raw.py -> build/lib/coppafish/utils
2022-08-22T18:08:07,587   copying coppafish/utils/warnings.py -> build/lib/coppafish/utils
2022-08-22T18:08:07,591   copying coppafish/utils/errors.py -> build/lib/coppafish/utils
2022-08-22T18:08:07,595   copying coppafish/utils/__init__.py -> build/lib/coppafish/utils
2022-08-22T18:08:07,600   creating build/lib/coppafish/setup/test
2022-08-22T18:08:07,601   copying coppafish/setup/test/test_config.py -> build/lib/coppafish/setup/test
2022-08-22T18:08:07,606   copying coppafish/setup/test/test_notebook.py -> build/lib/coppafish/setup/test
2022-08-22T18:08:07,610   copying coppafish/setup/test/test_tilepos.py -> build/lib/coppafish/setup/test
2022-08-22T18:08:07,614   copying coppafish/setup/test/__init__.py -> build/lib/coppafish/setup/test
2022-08-22T18:08:07,618   creating build/lib/coppafish/plot/stitch
2022-08-22T18:08:07,620   copying coppafish/plot/stitch/point_clouds.py -> build/lib/coppafish/plot/stitch
2022-08-22T18:08:07,626   copying coppafish/plot/stitch/shift.py -> build/lib/coppafish/plot/stitch
2022-08-22T18:08:07,631   copying coppafish/plot/stitch/__init__.py -> build/lib/coppafish/plot/stitch
2022-08-22T18:08:07,634   copying coppafish/plot/stitch/diagnostics.py -> build/lib/coppafish/plot/stitch
2022-08-22T18:08:07,640   creating build/lib/coppafish/plot/results_viewer
2022-08-22T18:08:07,642   copying coppafish/plot/results_viewer/base.py -> build/lib/coppafish/plot/results_viewer
2022-08-22T18:08:07,648   copying coppafish/plot/results_viewer/__init__.py -> build/lib/coppafish/plot/results_viewer
2022-08-22T18:08:07,652   creating build/lib/coppafish/plot/find_spots
2022-08-22T18:08:07,653   copying coppafish/plot/find_spots/viewer.py -> build/lib/coppafish/plot/find_spots
2022-08-22T18:08:07,659   copying coppafish/plot/find_spots/n_spots.py -> build/lib/coppafish/plot/find_spots
2022-08-22T18:08:07,662   copying coppafish/plot/find_spots/__init__.py -> build/lib/coppafish/plot/find_spots
2022-08-22T18:08:07,666   creating build/lib/coppafish/plot/extract
2022-08-22T18:08:07,668   copying coppafish/plot/extract/viewer.py -> build/lib/coppafish/plot/extract
2022-08-22T18:08:07,673   copying coppafish/plot/extract/__init__.py -> build/lib/coppafish/plot/extract
2022-08-22T18:08:07,676   copying coppafish/plot/extract/diagnostics.py -> build/lib/coppafish/plot/extract
2022-08-22T18:08:07,682   creating build/lib/coppafish/plot/register
2022-08-22T18:08:07,684   copying coppafish/plot/register/icp.py -> build/lib/coppafish/plot/register
2022-08-22T18:08:07,689   copying coppafish/plot/register/shift.py -> build/lib/coppafish/plot/register
2022-08-22T18:08:07,693   copying coppafish/plot/register/__init__.py -> build/lib/coppafish/plot/register
2022-08-22T18:08:07,697   copying coppafish/plot/register/diagnostics.py -> build/lib/coppafish/plot/register
2022-08-22T18:08:07,703   creating build/lib/coppafish/plot/omp
2022-08-22T18:08:07,704   copying coppafish/plot/omp/score_shape.py -> build/lib/coppafish/plot/omp
2022-08-22T18:08:07,709   copying coppafish/plot/omp/score_hist.py -> build/lib/coppafish/plot/omp
2022-08-22T18:08:07,714   copying coppafish/plot/omp/track_fit.py -> build/lib/coppafish/plot/omp
2022-08-22T18:08:07,718   copying coppafish/plot/omp/coefs.py -> build/lib/coppafish/plot/omp
2022-08-22T18:08:07,723   copying coppafish/plot/omp/__init__.py -> build/lib/coppafish/plot/omp
2022-08-22T18:08:07,729   creating build/lib/coppafish/plot/call_spots
2022-08-22T18:08:07,731   copying coppafish/plot/call_spots/dot_product.py -> build/lib/coppafish/plot/call_spots
2022-08-22T18:08:07,738   copying coppafish/plot/call_spots/score_calc.py -> build/lib/coppafish/plot/call_spots
2022-08-22T18:08:07,742   copying coppafish/plot/call_spots/spot_colors.py -> build/lib/coppafish/plot/call_spots
2022-08-22T18:08:07,748   copying coppafish/plot/call_spots/gene_counts.py -> build/lib/coppafish/plot/call_spots
2022-08-22T18:08:07,753   copying coppafish/plot/call_spots/background.py -> build/lib/coppafish/plot/call_spots
2022-08-22T18:08:07,758   copying coppafish/plot/call_spots/scaled_k_means.py -> build/lib/coppafish/plot/call_spots
2022-08-22T18:08:07,762   copying coppafish/plot/call_spots/__init__.py -> build/lib/coppafish/plot/call_spots
2022-08-22T18:08:07,765   copying coppafish/plot/call_spots/bleed_matrix.py -> build/lib/coppafish/plot/call_spots
2022-08-22T18:08:07,770   copying coppafish/plot/call_spots/weight.py -> build/lib/coppafish/plot/call_spots
2022-08-22T18:08:07,776   creating build/lib/coppafish/spot_colors/test
2022-08-22T18:08:07,777   copying coppafish/spot_colors/test/data_initialise.py -> build/lib/coppafish/spot_colors/test
2022-08-22T18:08:07,781   copying coppafish/spot_colors/test/__init__.py -> build/lib/coppafish/spot_colors/test
2022-08-22T18:08:07,785   copying coppafish/spot_colors/test/test_spot_colors.py -> build/lib/coppafish/spot_colors/test
2022-08-22T18:08:07,791   creating build/lib/coppafish/stitch/test
2022-08-22T18:08:07,792   copying coppafish/stitch/test/test_tile_origin.py -> build/lib/coppafish/stitch/test
2022-08-22T18:08:07,796   copying coppafish/stitch/test/test_shift.py -> build/lib/coppafish/stitch/test
2022-08-22T18:08:07,800   copying coppafish/stitch/test/__init__.py -> build/lib/coppafish/stitch/test
2022-08-22T18:08:07,805   creating build/lib/coppafish/find_spots/test
2022-08-22T18:08:07,807   copying coppafish/find_spots/test/test_optimised.py -> build/lib/coppafish/find_spots/test
2022-08-22T18:08:07,812   copying coppafish/find_spots/test/test_base.py -> build/lib/coppafish/find_spots/test
2022-08-22T18:08:07,816   copying coppafish/find_spots/test/random_spot.py -> build/lib/coppafish/find_spots/test
2022-08-22T18:08:07,819   copying coppafish/find_spots/test/test_neighbour.py -> build/lib/coppafish/find_spots/test
2022-08-22T18:08:07,823   copying coppafish/find_spots/test/__init__.py -> build/lib/coppafish/find_spots/test
2022-08-22T18:08:07,828   creating build/lib/coppafish/extract/test
2022-08-22T18:08:07,830   copying coppafish/extract/test/test_fstack.py -> build/lib/coppafish/extract/test
2022-08-22T18:08:07,833   copying coppafish/extract/test/test_strip_hack.py -> build/lib/coppafish/extract/test
2022-08-22T18:08:07,837   copying coppafish/extract/test/__init__.py -> build/lib/coppafish/extract/test
2022-08-22T18:08:07,842   creating build/lib/coppafish/register/test
2022-08-22T18:08:07,843   copying coppafish/register/test/test_base.py -> build/lib/coppafish/register/test
2022-08-22T18:08:07,848   copying coppafish/register/test/__init__.py -> build/lib/coppafish/register/test
2022-08-22T18:08:07,853   creating build/lib/coppafish/omp/test
2022-08-22T18:08:07,855   copying coppafish/omp/test/test_optimised.py -> build/lib/coppafish/omp/test
2022-08-22T18:08:07,860   copying coppafish/omp/test/test_all.py -> build/lib/coppafish/omp/test
2022-08-22T18:08:07,865   copying coppafish/omp/test/__init__.py -> build/lib/coppafish/omp/test
2022-08-22T18:08:07,870   creating build/lib/coppafish/call_spots/test
2022-08-22T18:08:07,872   copying coppafish/call_spots/test/test_optimised.py -> build/lib/coppafish/call_spots/test
2022-08-22T18:08:07,877   copying coppafish/call_spots/test/test_base.py -> build/lib/coppafish/call_spots/test
2022-08-22T18:08:07,882   copying coppafish/call_spots/test/test_bleed_matrix.py -> build/lib/coppafish/call_spots/test
2022-08-22T18:08:07,887   copying coppafish/call_spots/test/__init__.py -> build/lib/coppafish/call_spots/test
2022-08-22T18:08:07,892   creating build/lib/coppafish/utils/test
2022-08-22T18:08:07,894   copying coppafish/utils/test/test_optimised.py -> build/lib/coppafish/utils/test
2022-08-22T18:08:07,899   copying coppafish/utils/test/test_morphology.py -> build/lib/coppafish/utils/test
2022-08-22T18:08:07,905   copying coppafish/utils/test/test_npy.py -> build/lib/coppafish/utils/test
2022-08-22T18:08:07,909   copying coppafish/utils/test/__init__.py -> build/lib/coppafish/utils/test
2022-08-22T18:08:07,915   creating build/lib/coppafish/utils/morphology
2022-08-22T18:08:07,917   copying coppafish/utils/morphology/base.py -> build/lib/coppafish/utils/morphology
2022-08-22T18:08:07,922   copying coppafish/utils/morphology/filter_optimised.py -> build/lib/coppafish/utils/morphology
2022-08-22T18:08:07,927   copying coppafish/utils/morphology/filter.py -> build/lib/coppafish/utils/morphology
2022-08-22T18:08:07,932   copying coppafish/utils/morphology/__init__.py -> build/lib/coppafish/utils/morphology
2022-08-22T18:08:07,941   copying coppafish/setup/settings.default.ini -> build/lib/coppafish/setup
2022-08-22T18:08:07,949   copying coppafish/setup/notebook_comments.json -> build/lib/coppafish/setup
2022-08-22T18:08:07,956   copying coppafish/setup/dye_camera_laser_raw_intensity.csv -> build/lib/coppafish/setup
2022-08-22T18:08:08,644   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-08-22T18:08:08,644     warnings.warn(
2022-08-22T18:08:09,337   installing to build/bdist.linux-armv7l/wheel
2022-08-22T18:08:09,338   running install
2022-08-22T18:08:09,399   running install_lib
2022-08-22T18:08:10,051   creating build/bdist.linux-armv7l
2022-08-22T18:08:10,052   creating build/bdist.linux-armv7l/wheel
2022-08-22T18:08:10,055   creating build/bdist.linux-armv7l/wheel/coppafish
2022-08-22T18:08:10,058   creating build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-22T18:08:10,060   copying build/lib/coppafish/setup/notebook.py -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-22T18:08:10,066   copying build/lib/coppafish/setup/settings.default.ini -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-22T18:08:10,073   copying build/lib/coppafish/setup/tile_details.py -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-22T18:08:10,077   copying build/lib/coppafish/setup/dye_camera_laser_raw_intensity.csv -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-22T18:08:10,083   creating build/bdist.linux-armv7l/wheel/coppafish/setup/test
2022-08-22T18:08:10,084   copying build/lib/coppafish/setup/test/test_config.py -> build/bdist.linux-armv7l/wheel/coppafish/setup/test
2022-08-22T18:08:10,089   copying build/lib/coppafish/setup/test/test_notebook.py -> build/bdist.linux-armv7l/wheel/coppafish/setup/test
2022-08-22T18:08:10,094   copying build/lib/coppafish/setup/test/test_tilepos.py -> build/bdist.linux-armv7l/wheel/coppafish/setup/test
2022-08-22T18:08:10,097   copying build/lib/coppafish/setup/test/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/setup/test
2022-08-22T18:08:10,101   copying build/lib/coppafish/setup/file_names.py -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-22T18:08:10,105   copying build/lib/coppafish/setup/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-22T18:08:10,109   copying build/lib/coppafish/setup/notebook_comments.json -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-22T18:08:10,115   copying build/lib/coppafish/setup/config.py -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-22T18:08:10,120   copying build/lib/coppafish/_version.py -> build/bdist.linux-armv7l/wheel/coppafish
2022-08-22T18:08:10,124   creating build/bdist.linux-armv7l/wheel/coppafish/plot
2022-08-22T18:08:10,127   creating build/bdist.linux-armv7l/wheel/coppafish/plot/stitch
2022-08-22T18:08:10,129   copying build/lib/coppafish/plot/stitch/point_clouds.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/stitch
2022-08-22T18:08:10,134   copying build/lib/coppafish/plot/stitch/shift.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/stitch
2022-08-22T18:08:10,138   copying build/lib/coppafish/plot/stitch/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/stitch
2022-08-22T18:08:10,142   copying build/lib/coppafish/plot/stitch/diagnostics.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/stitch
2022-08-22T18:08:10,147   creating build/bdist.linux-armv7l/wheel/coppafish/plot/results_viewer
2022-08-22T18:08:10,148   copying build/lib/coppafish/plot/results_viewer/base.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/results_viewer
2022-08-22T18:08:10,154   copying build/lib/coppafish/plot/results_viewer/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/results_viewer
2022-08-22T18:08:10,157   creating build/bdist.linux-armv7l/wheel/coppafish/plot/find_spots
2022-08-22T18:08:10,159   copying build/lib/coppafish/plot/find_spots/viewer.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/find_spots
2022-08-22T18:08:10,164   copying build/lib/coppafish/plot/find_spots/n_spots.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/find_spots
2022-08-22T18:08:10,168   copying build/lib/coppafish/plot/find_spots/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/find_spots
2022-08-22T18:08:10,172   creating build/bdist.linux-armv7l/wheel/coppafish/plot/extract
2022-08-22T18:08:10,173   copying build/lib/coppafish/plot/extract/viewer.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/extract
2022-08-22T18:08:10,178   copying build/lib/coppafish/plot/extract/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/extract
2022-08-22T18:08:10,182   copying build/lib/coppafish/plot/extract/diagnostics.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/extract
2022-08-22T18:08:10,187   creating build/bdist.linux-armv7l/wheel/coppafish/plot/register
2022-08-22T18:08:10,188   copying build/lib/coppafish/plot/register/icp.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/register
2022-08-22T18:08:10,193   copying build/lib/coppafish/plot/register/shift.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/register
2022-08-22T18:08:10,198   copying build/lib/coppafish/plot/register/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/register
2022-08-22T18:08:10,201   copying build/lib/coppafish/plot/register/diagnostics.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/register
2022-08-22T18:08:10,206   creating build/bdist.linux-armv7l/wheel/coppafish/plot/omp
2022-08-22T18:08:10,208   copying build/lib/coppafish/plot/omp/score_shape.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/omp
2022-08-22T18:08:10,212   copying build/lib/coppafish/plot/omp/score_hist.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/omp
2022-08-22T18:08:10,217   copying build/lib/coppafish/plot/omp/track_fit.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/omp
2022-08-22T18:08:10,221   copying build/lib/coppafish/plot/omp/coefs.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/omp
2022-08-22T18:08:10,225   copying build/lib/coppafish/plot/omp/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/omp
2022-08-22T18:08:10,229   copying build/lib/coppafish/plot/raw.py -> build/bdist.linux-armv7l/wheel/coppafish/plot
2022-08-22T18:08:10,234   creating build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:08:10,235   copying build/lib/coppafish/plot/call_spots/dot_product.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:08:10,241   copying build/lib/coppafish/plot/call_spots/score_calc.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:08:10,244   copying build/lib/coppafish/plot/call_spots/spot_colors.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:08:10,249   copying build/lib/coppafish/plot/call_spots/gene_counts.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:08:10,253   copying build/lib/coppafish/plot/call_spots/background.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:08:10,258   copying build/lib/coppafish/plot/call_spots/scaled_k_means.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:08:10,261   copying build/lib/coppafish/plot/call_spots/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:08:10,265   copying build/lib/coppafish/plot/call_spots/bleed_matrix.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:08:10,269   copying build/lib/coppafish/plot/call_spots/weight.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:08:10,273   copying build/lib/coppafish/plot/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot
2022-08-22T18:08:10,277   creating build/bdist.linux-armv7l/wheel/coppafish/spot_colors
2022-08-22T18:08:10,279   copying build/lib/coppafish/spot_colors/base.py -> build/bdist.linux-armv7l/wheel/coppafish/spot_colors
2022-08-22T18:08:10,283   copying build/lib/coppafish/spot_colors/base_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/spot_colors
2022-08-22T18:08:10,289   creating build/bdist.linux-armv7l/wheel/coppafish/spot_colors/test
2022-08-22T18:08:10,290   copying build/lib/coppafish/spot_colors/test/data_initialise.py -> build/bdist.linux-armv7l/wheel/coppafish/spot_colors/test
2022-08-22T18:08:10,294   copying build/lib/coppafish/spot_colors/test/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/spot_colors/test
2022-08-22T18:08:10,298   copying build/lib/coppafish/spot_colors/test/test_spot_colors.py -> build/bdist.linux-armv7l/wheel/coppafish/spot_colors/test
2022-08-22T18:08:10,302   copying build/lib/coppafish/spot_colors/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/spot_colors
2022-08-22T18:08:10,306   creating build/bdist.linux-armv7l/wheel/coppafish/stitch
2022-08-22T18:08:10,307   copying build/lib/coppafish/stitch/tile_origin.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch
2022-08-22T18:08:10,311   copying build/lib/coppafish/stitch/starting_shifts.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch
2022-08-22T18:08:10,314   copying build/lib/coppafish/stitch/shift.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch
2022-08-22T18:08:10,321   creating build/bdist.linux-armv7l/wheel/coppafish/stitch/test
2022-08-22T18:08:10,323   copying build/lib/coppafish/stitch/test/test_tile_origin.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch/test
2022-08-22T18:08:10,326   copying build/lib/coppafish/stitch/test/test_shift.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch/test
2022-08-22T18:08:10,331   copying build/lib/coppafish/stitch/test/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch/test
2022-08-22T18:08:10,334   copying build/lib/coppafish/stitch/check_shifts.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch
2022-08-22T18:08:10,338   copying build/lib/coppafish/stitch/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch
2022-08-22T18:08:10,343   creating build/bdist.linux-armv7l/wheel/coppafish/find_spots
2022-08-22T18:08:10,344   copying build/lib/coppafish/find_spots/base.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots
2022-08-22T18:08:10,349   copying build/lib/coppafish/find_spots/check_spots.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots
2022-08-22T18:08:10,354   creating build/bdist.linux-armv7l/wheel/coppafish/find_spots/test
2022-08-22T18:08:10,355   copying build/lib/coppafish/find_spots/test/test_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots/test
2022-08-22T18:08:10,360   copying build/lib/coppafish/find_spots/test/test_base.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots/test
2022-08-22T18:08:10,363   copying build/lib/coppafish/find_spots/test/random_spot.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots/test
2022-08-22T18:08:10,367   copying build/lib/coppafish/find_spots/test/test_neighbour.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots/test
2022-08-22T18:08:10,371   copying build/lib/coppafish/find_spots/test/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots/test
2022-08-22T18:08:10,375   copying build/lib/coppafish/find_spots/detect_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots
2022-08-22T18:08:10,379   copying build/lib/coppafish/find_spots/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots
2022-08-22T18:08:10,382   copying build/lib/coppafish/find_spots/detect.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots
2022-08-22T18:08:10,386   creating build/bdist.linux-armv7l/wheel/coppafish/extract
2022-08-22T18:08:10,388   copying build/lib/coppafish/extract/base.py -> build/bdist.linux-armv7l/wheel/coppafish/extract
2022-08-22T18:08:10,392   copying build/lib/coppafish/extract/scale.py -> build/bdist.linux-armv7l/wheel/coppafish/extract
2022-08-22T18:08:10,397   copying build/lib/coppafish/extract/deconvolution.py -> build/bdist.linux-armv7l/wheel/coppafish/extract
2022-08-22T18:08:10,401   copying build/lib/coppafish/extract/fstack.py -> build/bdist.linux-armv7l/wheel/coppafish/extract
2022-08-22T18:08:10,406   creating build/bdist.linux-armv7l/wheel/coppafish/extract/test
2022-08-22T18:08:10,408   copying build/lib/coppafish/extract/test/test_fstack.py -> build/bdist.linux-armv7l/wheel/coppafish/extract/test
2022-08-22T18:08:10,411   copying build/lib/coppafish/extract/test/test_strip_hack.py -> build/bdist.linux-armv7l/wheel/coppafish/extract/test
2022-08-22T18:08:10,415   copying build/lib/coppafish/extract/test/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/extract/test
2022-08-22T18:08:10,418   copying build/lib/coppafish/extract/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/extract
2022-08-22T18:08:10,422   creating build/bdist.linux-armv7l/wheel/coppafish/register
2022-08-22T18:08:10,424   copying build/lib/coppafish/register/check_transforms.py -> build/bdist.linux-armv7l/wheel/coppafish/register
2022-08-22T18:08:10,428   copying build/lib/coppafish/register/base.py -> build/bdist.linux-armv7l/wheel/coppafish/register
2022-08-22T18:08:10,434   creating build/bdist.linux-armv7l/wheel/coppafish/register/test
2022-08-22T18:08:10,436   copying build/lib/coppafish/register/test/test_base.py -> build/bdist.linux-armv7l/wheel/coppafish/register/test
2022-08-22T18:08:10,441   copying build/lib/coppafish/register/test/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/register/test
2022-08-22T18:08:10,445   copying build/lib/coppafish/register/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/register
2022-08-22T18:08:10,449   creating build/bdist.linux-armv7l/wheel/coppafish/omp
2022-08-22T18:08:10,450   copying build/lib/coppafish/omp/coefs_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/omp
2022-08-22T18:08:10,456   copying build/lib/coppafish/omp/spots.py -> build/bdist.linux-armv7l/wheel/coppafish/omp
2022-08-22T18:08:10,461   copying build/lib/coppafish/omp/base.py -> build/bdist.linux-armv7l/wheel/coppafish/omp
2022-08-22T18:08:10,464   copying build/lib/coppafish/omp/coefs.py -> build/bdist.linux-armv7l/wheel/coppafish/omp
2022-08-22T18:08:10,471   creating build/bdist.linux-armv7l/wheel/coppafish/omp/test
2022-08-22T18:08:10,473   copying build/lib/coppafish/omp/test/test_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/omp/test
2022-08-22T18:08:10,478   copying build/lib/coppafish/omp/test/test_all.py -> build/bdist.linux-armv7l/wheel/coppafish/omp/test
2022-08-22T18:08:10,482   copying build/lib/coppafish/omp/test/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/omp/test
2022-08-22T18:08:10,485   copying build/lib/coppafish/omp/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/omp
2022-08-22T18:08:10,489   copying build/lib/coppafish/__main__.py -> build/bdist.linux-armv7l/wheel/coppafish
2022-08-22T18:08:10,494   creating build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:08:10,495   copying build/lib/coppafish/call_spots/qual_check.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:08:10,500   copying build/lib/coppafish/call_spots/base.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:08:10,505   copying build/lib/coppafish/call_spots/qual_check_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:08:10,508   copying build/lib/coppafish/call_spots/dot_product.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:08:10,512   copying build/lib/coppafish/call_spots/dot_product_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:08:10,515   copying build/lib/coppafish/call_spots/background.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:08:10,520   creating build/bdist.linux-armv7l/wheel/coppafish/call_spots/test
2022-08-22T18:08:10,522   copying build/lib/coppafish/call_spots/test/test_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots/test
2022-08-22T18:08:10,526   copying build/lib/coppafish/call_spots/test/test_base.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots/test
2022-08-22T18:08:10,530   copying build/lib/coppafish/call_spots/test/test_bleed_matrix.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots/test
2022-08-22T18:08:10,534   copying build/lib/coppafish/call_spots/test/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots/test
2022-08-22T18:08:10,538   copying build/lib/coppafish/call_spots/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:08:10,542   copying build/lib/coppafish/call_spots/bleed_matrix.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:08:10,547   copying build/lib/coppafish/call_spots/background_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:08:10,551   creating build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:08:10,553   copying build/lib/coppafish/pipeline/stitch.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:08:10,558   copying build/lib/coppafish/pipeline/basic_info.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:08:10,562   copying build/lib/coppafish/pipeline/get_reference_spots.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:08:10,567   copying build/lib/coppafish/pipeline/omp.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:08:10,571   copying build/lib/coppafish/pipeline/call_reference_spots.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:08:10,576   copying build/lib/coppafish/pipeline/register.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:08:10,580   copying build/lib/coppafish/pipeline/register_initial.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:08:10,584   copying build/lib/coppafish/pipeline/run.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:08:10,589   copying build/lib/coppafish/pipeline/find_spots.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:08:10,593   copying build/lib/coppafish/pipeline/extract_run.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:08:10,598   copying build/lib/coppafish/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:08:10,601   copying build/lib/coppafish/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish
2022-08-22T18:08:10,606   creating build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:08:10,607   copying build/lib/coppafish/utils/nd2.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:08:10,612   copying build/lib/coppafish/utils/base.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:08:10,616   copying build/lib/coppafish/utils/strel.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:08:10,620   copying build/lib/coppafish/utils/spot_images.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:08:10,625   copying build/lib/coppafish/utils/pciseq.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:08:10,629   copying build/lib/coppafish/utils/npy.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:08:10,633   copying build/lib/coppafish/utils/matlab.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:08:10,637   copying build/lib/coppafish/utils/raw.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:08:10,641   copying build/lib/coppafish/utils/warnings.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:08:10,644   copying build/lib/coppafish/utils/errors.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:08:10,649   creating build/bdist.linux-armv7l/wheel/coppafish/utils/test
2022-08-22T18:08:10,651   copying build/lib/coppafish/utils/test/test_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/test
2022-08-22T18:08:10,655   copying build/lib/coppafish/utils/test/test_morphology.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/test
2022-08-22T18:08:10,659   copying build/lib/coppafish/utils/test/test_npy.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/test
2022-08-22T18:08:10,663   copying build/lib/coppafish/utils/test/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/test
2022-08-22T18:08:10,667   copying build/lib/coppafish/utils/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:08:10,672   creating build/bdist.linux-armv7l/wheel/coppafish/utils/morphology
2022-08-22T18:08:10,673   copying build/lib/coppafish/utils/morphology/base.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/morphology
2022-08-22T18:08:10,678   copying build/lib/coppafish/utils/morphology/filter_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/morphology
2022-08-22T18:08:10,682   copying build/lib/coppafish/utils/morphology/filter.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/morphology
2022-08-22T18:08:10,686   copying build/lib/coppafish/utils/morphology/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/morphology
2022-08-22T18:08:10,689   running install_egg_info
2022-08-22T18:08:12,013   running egg_info
2022-08-22T18:08:12,683   writing coppafish.egg-info/PKG-INFO
2022-08-22T18:08:13,243   writing dependency_links to coppafish.egg-info/dependency_links.txt
2022-08-22T18:08:16,068   writing requirements to coppafish.egg-info/requires.txt
2022-08-22T18:08:16,629   writing top-level names to coppafish.egg-info/top_level.txt
2022-08-22T18:08:16,758   reading manifest file 'coppafish.egg-info/SOURCES.txt'
2022-08-22T18:08:16,769   adding license file 'LICENSE.md'
2022-08-22T18:08:16,789   writing manifest file 'coppafish.egg-info/SOURCES.txt'
2022-08-22T18:08:16,793   Copying coppafish.egg-info to build/bdist.linux-armv7l/wheel/coppafish-0.1.2-py3.9.egg-info
2022-08-22T18:08:16,813   running install_scripts
2022-08-22T18:08:17,028   adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*")
2022-08-22T18:08:17,037   creating build/bdist.linux-armv7l/wheel/coppafish-0.1.2.dist-info/WHEEL
2022-08-22T18:08:17,042   creating '/tmp/pip-wheel-c5wt2r9d/coppafish-0.1.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-08-22T18:08:17,047   adding 'coppafish/__init__.py'
2022-08-22T18:08:17,050   adding 'coppafish/__main__.py'
2022-08-22T18:08:17,052   adding 'coppafish/_version.py'
2022-08-22T18:08:17,055   adding 'coppafish/call_spots/__init__.py'
2022-08-22T18:08:17,058   adding 'coppafish/call_spots/background.py'
2022-08-22T18:08:17,061   adding 'coppafish/call_spots/background_optimised.py'
2022-08-22T18:08:17,067   adding 'coppafish/call_spots/base.py'
2022-08-22T18:08:17,074   adding 'coppafish/call_spots/bleed_matrix.py'
2022-08-22T18:08:17,077   adding 'coppafish/call_spots/dot_product.py'
2022-08-22T18:08:17,080   adding 'coppafish/call_spots/dot_product_optimised.py'
2022-08-22T18:08:17,082   adding 'coppafish/call_spots/qual_check.py'
2022-08-22T18:08:17,085   adding 'coppafish/call_spots/qual_check_optimised.py'
2022-08-22T18:08:17,089   adding 'coppafish/call_spots/test/__init__.py'
2022-08-22T18:08:17,092   adding 'coppafish/call_spots/test/test_base.py'
2022-08-22T18:08:17,095   adding 'coppafish/call_spots/test/test_bleed_matrix.py'
2022-08-22T18:08:17,099   adding 'coppafish/call_spots/test/test_optimised.py'
2022-08-22T18:08:17,102   adding 'coppafish/extract/__init__.py'
2022-08-22T18:08:17,106   adding 'coppafish/extract/base.py'
2022-08-22T18:08:17,111   adding 'coppafish/extract/deconvolution.py'
2022-08-22T18:08:17,115   adding 'coppafish/extract/fstack.py'
2022-08-22T18:08:17,120   adding 'coppafish/extract/scale.py'
2022-08-22T18:08:17,124   adding 'coppafish/extract/test/__init__.py'
2022-08-22T18:08:17,126   adding 'coppafish/extract/test/test_fstack.py'
2022-08-22T18:08:17,129   adding 'coppafish/extract/test/test_strip_hack.py'
2022-08-22T18:08:17,132   adding 'coppafish/find_spots/__init__.py'
2022-08-22T18:08:17,135   adding 'coppafish/find_spots/base.py'
2022-08-22T18:08:17,138   adding 'coppafish/find_spots/check_spots.py'
2022-08-22T18:08:17,141   adding 'coppafish/find_spots/detect.py'
2022-08-22T18:08:17,144   adding 'coppafish/find_spots/detect_optimised.py'
2022-08-22T18:08:17,148   adding 'coppafish/find_spots/test/__init__.py'
2022-08-22T18:08:17,151   adding 'coppafish/find_spots/test/random_spot.py'
2022-08-22T18:08:17,153   adding 'coppafish/find_spots/test/test_base.py'
2022-08-22T18:08:17,156   adding 'coppafish/find_spots/test/test_neighbour.py'
2022-08-22T18:08:17,159   adding 'coppafish/find_spots/test/test_optimised.py'
2022-08-22T18:08:17,163   adding 'coppafish/omp/__init__.py'
2022-08-22T18:08:17,165   adding 'coppafish/omp/base.py'
2022-08-22T18:08:17,172   adding 'coppafish/omp/coefs.py'
2022-08-22T18:08:17,179   adding 'coppafish/omp/coefs_optimised.py'
2022-08-22T18:08:17,185   adding 'coppafish/omp/spots.py'
2022-08-22T18:08:17,189   adding 'coppafish/omp/test/__init__.py'
2022-08-22T18:08:17,192   adding 'coppafish/omp/test/test_all.py'
2022-08-22T18:08:17,197   adding 'coppafish/omp/test/test_optimised.py'
2022-08-22T18:08:17,200   adding 'coppafish/pipeline/__init__.py'
2022-08-22T18:08:17,204   adding 'coppafish/pipeline/basic_info.py'
2022-08-22T18:08:17,210   adding 'coppafish/pipeline/call_reference_spots.py'
2022-08-22T18:08:17,215   adding 'coppafish/pipeline/extract_run.py'
2022-08-22T18:08:17,219   adding 'coppafish/pipeline/find_spots.py'
2022-08-22T18:08:17,222   adding 'coppafish/pipeline/get_reference_spots.py'
2022-08-22T18:08:17,228   adding 'coppafish/pipeline/omp.py'
2022-08-22T18:08:17,231   adding 'coppafish/pipeline/register.py'
2022-08-22T18:08:17,236   adding 'coppafish/pipeline/register_initial.py'
2022-08-22T18:08:17,240   adding 'coppafish/pipeline/run.py'
2022-08-22T18:08:17,244   adding 'coppafish/pipeline/stitch.py'
2022-08-22T18:08:17,248   adding 'coppafish/plot/__init__.py'
2022-08-22T18:08:17,251   adding 'coppafish/plot/raw.py'
2022-08-22T18:08:17,254   adding 'coppafish/plot/call_spots/__init__.py'
2022-08-22T18:08:17,259   adding 'coppafish/plot/call_spots/background.py'
2022-08-22T18:08:17,262   adding 'coppafish/plot/call_spots/bleed_matrix.py'
2022-08-22T18:08:17,268   adding 'coppafish/plot/call_spots/dot_product.py'
2022-08-22T18:08:17,273   adding 'coppafish/plot/call_spots/gene_counts.py'
2022-08-22T18:08:17,276   adding 'coppafish/plot/call_spots/scaled_k_means.py'
2022-08-22T18:08:17,279   adding 'coppafish/plot/call_spots/score_calc.py'
2022-08-22T18:08:17,285   adding 'coppafish/plot/call_spots/spot_colors.py'
2022-08-22T18:08:17,291   adding 'coppafish/plot/call_spots/weight.py'
2022-08-22T18:08:17,294   adding 'coppafish/plot/extract/__init__.py'
2022-08-22T18:08:17,298   adding 'coppafish/plot/extract/diagnostics.py'
2022-08-22T18:08:17,302   adding 'coppafish/plot/extract/viewer.py'
2022-08-22T18:08:17,306   adding 'coppafish/plot/find_spots/__init__.py'
2022-08-22T18:08:17,309   adding 'coppafish/plot/find_spots/n_spots.py'
2022-08-22T18:08:17,313   adding 'coppafish/plot/find_spots/viewer.py'
2022-08-22T18:08:17,317   adding 'coppafish/plot/omp/__init__.py'
2022-08-22T18:08:17,322   adding 'coppafish/plot/omp/coefs.py'
2022-08-22T18:08:17,328   adding 'coppafish/plot/omp/score_hist.py'
2022-08-22T18:08:17,332   adding 'coppafish/plot/omp/score_shape.py'
2022-08-22T18:08:17,335   adding 'coppafish/plot/omp/track_fit.py'
2022-08-22T18:08:17,339   adding 'coppafish/plot/register/__init__.py'
2022-08-22T18:08:17,342   adding 'coppafish/plot/register/diagnostics.py'
2022-08-22T18:08:17,348   adding 'coppafish/plot/register/icp.py'
2022-08-22T18:08:17,352   adding 'coppafish/plot/register/shift.py'
2022-08-22T18:08:17,355   adding 'coppafish/plot/results_viewer/__init__.py'
2022-08-22T18:08:17,363   adding 'coppafish/plot/results_viewer/base.py'
2022-08-22T18:08:17,367   adding 'coppafish/plot/stitch/__init__.py'
2022-08-22T18:08:17,370   adding 'coppafish/plot/stitch/diagnostics.py'
2022-08-22T18:08:17,376   adding 'coppafish/plot/stitch/point_clouds.py'
2022-08-22T18:08:17,381   adding 'coppafish/plot/stitch/shift.py'
2022-08-22T18:08:17,384   adding 'coppafish/register/__init__.py'
2022-08-22T18:08:17,391   adding 'coppafish/register/base.py'
2022-08-22T18:08:17,394   adding 'coppafish/register/check_transforms.py'
2022-08-22T18:08:17,398   adding 'coppafish/register/test/__init__.py'
2022-08-22T18:08:17,402   adding 'coppafish/register/test/test_base.py'
2022-08-22T18:08:17,405   adding 'coppafish/setup/__init__.py'
2022-08-22T18:08:17,410   adding 'coppafish/setup/config.py'
2022-08-22T18:08:17,415   adding 'coppafish/setup/dye_camera_laser_raw_intensity.csv'
2022-08-22T18:08:17,418   adding 'coppafish/setup/file_names.py'
2022-08-22T18:08:17,431   adding 'coppafish/setup/notebook.py'
2022-08-22T18:08:17,442   adding 'coppafish/setup/notebook_comments.json'
2022-08-22T18:08:17,455   adding 'coppafish/setup/settings.default.ini'
2022-08-22T18:08:17,459   adding 'coppafish/setup/tile_details.py'
2022-08-22T18:08:17,464   adding 'coppafish/setup/test/__init__.py'
2022-08-22T18:08:17,468   adding 'coppafish/setup/test/test_config.py'
2022-08-22T18:08:17,471   adding 'coppafish/setup/test/test_notebook.py'
2022-08-22T18:08:17,474   adding 'coppafish/setup/test/test_tilepos.py'
2022-08-22T18:08:17,477   adding 'coppafish/spot_colors/__init__.py'
2022-08-22T18:08:17,481   adding 'coppafish/spot_colors/base.py'
2022-08-22T18:08:17,486   adding 'coppafish/spot_colors/base_optimised.py'
2022-08-22T18:08:17,490   adding 'coppafish/spot_colors/test/__init__.py'
2022-08-22T18:08:17,493   adding 'coppafish/spot_colors/test/data_initialise.py'
2022-08-22T18:08:17,496   adding 'coppafish/spot_colors/test/test_spot_colors.py'
2022-08-22T18:08:17,500   adding 'coppafish/stitch/__init__.py'
2022-08-22T18:08:17,502   adding 'coppafish/stitch/check_shifts.py'
2022-08-22T18:08:17,511   adding 'coppafish/stitch/shift.py'
2022-08-22T18:08:17,514   adding 'coppafish/stitch/starting_shifts.py'
2022-08-22T18:08:17,517   adding 'coppafish/stitch/tile_origin.py'
2022-08-22T18:08:17,520   adding 'coppafish/stitch/test/__init__.py'
2022-08-22T18:08:17,524   adding 'coppafish/stitch/test/test_shift.py'
2022-08-22T18:08:17,526   adding 'coppafish/stitch/test/test_tile_origin.py'
2022-08-22T18:08:17,530   adding 'coppafish/utils/__init__.py'
2022-08-22T18:08:17,532   adding 'coppafish/utils/base.py'
2022-08-22T18:08:17,536   adding 'coppafish/utils/errors.py'
2022-08-22T18:08:17,540   adding 'coppafish/utils/matlab.py'
2022-08-22T18:08:17,543   adding 'coppafish/utils/nd2.py'
2022-08-22T18:08:17,548   adding 'coppafish/utils/npy.py'
2022-08-22T18:08:17,551   adding 'coppafish/utils/pciseq.py'
2022-08-22T18:08:17,554   adding 'coppafish/utils/raw.py'
2022-08-22T18:08:17,558   adding 'coppafish/utils/spot_images.py'
2022-08-22T18:08:17,562   adding 'coppafish/utils/strel.py'
2022-08-22T18:08:17,564   adding 'coppafish/utils/warnings.py'
2022-08-22T18:08:17,567   adding 'coppafish/utils/morphology/__init__.py'
2022-08-22T18:08:17,571   adding 'coppafish/utils/morphology/base.py'
2022-08-22T18:08:17,574   adding 'coppafish/utils/morphology/filter.py'
2022-08-22T18:08:17,577   adding 'coppafish/utils/morphology/filter_optimised.py'
2022-08-22T18:08:17,580   adding 'coppafish/utils/test/__init__.py'
2022-08-22T18:08:17,584   adding 'coppafish/utils/test/test_morphology.py'
2022-08-22T18:08:17,588   adding 'coppafish/utils/test/test_npy.py'
2022-08-22T18:08:17,591   adding 'coppafish/utils/test/test_optimised.py'
2022-08-22T18:08:17,595   adding 'coppafish-0.1.2.dist-info/LICENSE.md'
2022-08-22T18:08:17,597   adding 'coppafish-0.1.2.dist-info/METADATA'
2022-08-22T18:08:17,599   adding 'coppafish-0.1.2.dist-info/WHEEL'
2022-08-22T18:08:17,600   adding 'coppafish-0.1.2.dist-info/top_level.txt'
2022-08-22T18:08:17,606   adding 'coppafish-0.1.2.dist-info/RECORD'
2022-08-22T18:08:17,624   removing build/bdist.linux-armv7l/wheel
2022-08-22T18:08:17,966   Building wheel for coppafish (setup.py): finished with status 'done'
2022-08-22T18:08:17,983   Created wheel for coppafish: filename=coppafish-0.1.2-py3-none-any.whl size=316957 sha256=2c1910fe7a84014c01e97dda48072a4bfb3c81ee2ef888514f6e840a4fa72e80
2022-08-22T18:08:17,985   Stored in directory: /tmp/pip-ephem-wheel-cache-lkc9nmz1/wheels/6e/0a/86/a185edfd6f807f2cb225ca361af06457d9daffd87e02d9e551
2022-08-22T18:08:18,019 Successfully built coppafish
2022-08-22T18:08:18,050 Removed build tracker: '/tmp/pip-build-tracker-heqeuegs'