2022-08-22T18:13:43,161 Created temporary directory: /tmp/pip-ephem-wheel-cache-urz98jou
2022-08-22T18:13:43,167 Created temporary directory: /tmp/pip-build-tracker-s8up2krb
2022-08-22T18:13:43,168 Initialized build tracking at /tmp/pip-build-tracker-s8up2krb
2022-08-22T18:13:43,168 Created build tracker: /tmp/pip-build-tracker-s8up2krb
2022-08-22T18:13:43,168 Entered build tracker: /tmp/pip-build-tracker-s8up2krb
2022-08-22T18:13:43,170 Created temporary directory: /tmp/pip-wheel-r6s9ah8l
2022-08-22T18:13:43,245 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-08-22T18:13:43,253 2 location(s) to search for versions of coppafish:
2022-08-22T18:13:43,253 * https://pypi.org/simple/coppafish/
2022-08-22T18:13:43,253 * https://www.piwheels.org/simple/coppafish/
2022-08-22T18:13:43,254 Fetching project page and analyzing links: https://pypi.org/simple/coppafish/
2022-08-22T18:13:43,255 Getting page https://pypi.org/simple/coppafish/
2022-08-22T18:13:43,259 Found index url https://pypi.org/simple
2022-08-22T18:13:43,390   Skipping link: No binaries permitted for coppafish: https://files.pythonhosted.org/packages/e9/73/6f328b727245a7251d65164be6ee4a76d7fd1adf87a968d7e21da367e795/coppafish-0.1.0-py3-none-any.whl#sha256=8dd52d97908f16a2f6a225945de7f97f8980b2cd01a9e3fe0adfed1e60568610 (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-22T18:13:43,392   Found link https://files.pythonhosted.org/packages/60/cf/5e979fb9e16482fdee00fcbfd16bcff74b90a1bcd6bbb7b5826e3a8df530/coppafish-0.1.0.tar.gz#sha256=27bdaebaf05e460d7d1fa165c57aeaaf5d6d3d5da4a3f3f440ae52b164f3da41 (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8), version: 0.1.0
2022-08-22T18:13:43,393   Skipping link: No binaries permitted for coppafish: https://files.pythonhosted.org/packages/fe/ba/c1f2893215fff630b6ac72f2c2b40c9c2bd872b68e1d61b3726fb5d311b3/coppafish-0.1.1-py3-none-any.whl#sha256=39ee446e654c947acb978e3b04045a77aeac95e218d670274fd7bc08ba8f5814 (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-22T18:13:43,394   Found link https://files.pythonhosted.org/packages/dc/be/b22d87837f76553d41be6e74dc30c3497709aebbd07d126f82c1a0de4812/coppafish-0.1.1.tar.gz#sha256=91806207a6be51fcde3bebfa715dbb34396eeccabe19f3b915119bd391a8ee10 (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8), version: 0.1.1
2022-08-22T18:13:43,395   Skipping link: No binaries permitted for coppafish: https://files.pythonhosted.org/packages/e1/46/89e58b37d74fee2680b5bc776d0559fa8fdf3caa83ec7f5874c2d80713db/coppafish-0.1.2-py3-none-any.whl#sha256=13265cb18b027ab750efc4fe916b4158140e747155bad07f296338d0df3d8b84 (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-22T18:13:43,396   Found link https://files.pythonhosted.org/packages/54/98/dd615cd49346eebd21228d40f7622c13f9f2d6bc1a9b3fc5099d84224a55/coppafish-0.1.2.tar.gz#sha256=676644625113060b0aa332eb73c1887da2ef71cb853e0c58e3219cf69dfb98cc (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8), version: 0.1.2
2022-08-22T18:13:43,397   Skipping link: No binaries permitted for coppafish: https://files.pythonhosted.org/packages/b0/7c/306b2f6a3f5f8bb17d4466f936423fc9ab67585ab477b056c653b70d4591/coppafish-0.1.3-py3-none-any.whl#sha256=dfff0aa689d6500e372646f36e1681103661ef650a72a3f0a6b9c380a24257bb (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-22T18:13:43,398   Found link https://files.pythonhosted.org/packages/a7/58/b11739cbb358beae6fa5070ce557d85e23906d56153bedfbbd65be0a826d/coppafish-0.1.3.tar.gz#sha256=c5c9da063c019771f6ea28d45e571952b92a8cbbb0f7dfd6f4c588a366f05188 (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8), version: 0.1.3
2022-08-22T18:13:43,399 Fetching project page and analyzing links: https://www.piwheels.org/simple/coppafish/
2022-08-22T18:13:43,400 Getting page https://www.piwheels.org/simple/coppafish/
2022-08-22T18:13:43,402 Found index url https://www.piwheels.org/simple
2022-08-22T18:13:43,673   Skipping link: No binaries permitted for coppafish: https://www.piwheels.org/simple/coppafish/coppafish-0.1.2-py3-none-any.whl#sha256=2c1910fe7a84014c01e97dda48072a4bfb3c81ee2ef888514f6e840a4fa72e80 (from https://www.piwheels.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-22T18:13:43,674 Skipping link: not a file: https://www.piwheels.org/simple/coppafish/
2022-08-22T18:13:43,675 Skipping link: not a file: https://pypi.org/simple/coppafish/
2022-08-22T18:13:43,721 Given no hashes to check 1 links for project 'coppafish': discarding no candidates
2022-08-22T18:13:43,764 Collecting coppafish==0.1.3
2022-08-22T18:13:43,768   Created temporary directory: /tmp/pip-unpack-56tkg4am
2022-08-22T18:13:44,503   Downloading coppafish-0.1.3.tar.gz (252 kB)
2022-08-22T18:13:45,334   Added coppafish==0.1.3 from https://files.pythonhosted.org/packages/a7/58/b11739cbb358beae6fa5070ce557d85e23906d56153bedfbbd65be0a826d/coppafish-0.1.3.tar.gz#sha256=c5c9da063c019771f6ea28d45e571952b92a8cbbb0f7dfd6f4c588a366f05188 to build tracker '/tmp/pip-build-tracker-s8up2krb'
2022-08-22T18:13:45,337   Running setup.py (path:/tmp/pip-wheel-r6s9ah8l/coppafish_2e905ce7b22c4ba89536fa1f169f8310/setup.py) egg_info for package coppafish
2022-08-22T18:13:45,339   Created temporary directory: /tmp/pip-pip-egg-info-cbmwtam6
2022-08-22T18:13:45,339   Preparing metadata (setup.py): started
2022-08-22T18:13:45,341   Running command python setup.py egg_info
2022-08-22T18:13:52,841   running egg_info
2022-08-22T18:13:52,845   creating /tmp/pip-pip-egg-info-cbmwtam6/coppafish.egg-info
2022-08-22T18:13:53,504   writing /tmp/pip-pip-egg-info-cbmwtam6/coppafish.egg-info/PKG-INFO
2022-08-22T18:13:54,065   writing dependency_links to /tmp/pip-pip-egg-info-cbmwtam6/coppafish.egg-info/dependency_links.txt
2022-08-22T18:13:56,859   writing requirements to /tmp/pip-pip-egg-info-cbmwtam6/coppafish.egg-info/requires.txt
2022-08-22T18:13:57,419   writing top-level names to /tmp/pip-pip-egg-info-cbmwtam6/coppafish.egg-info/top_level.txt
2022-08-22T18:13:57,421   writing manifest file '/tmp/pip-pip-egg-info-cbmwtam6/coppafish.egg-info/SOURCES.txt'
2022-08-22T18:13:58,367   reading manifest file '/tmp/pip-pip-egg-info-cbmwtam6/coppafish.egg-info/SOURCES.txt'
2022-08-22T18:13:58,370   adding license file 'LICENSE.md'
2022-08-22T18:13:58,386   writing manifest file '/tmp/pip-pip-egg-info-cbmwtam6/coppafish.egg-info/SOURCES.txt'
2022-08-22T18:13:58,592   Preparing metadata (setup.py): finished with status 'done'
2022-08-22T18:13:58,603   Source in /tmp/pip-wheel-r6s9ah8l/coppafish_2e905ce7b22c4ba89536fa1f169f8310 has version 0.1.3, which satisfies requirement coppafish==0.1.3 from https://files.pythonhosted.org/packages/a7/58/b11739cbb358beae6fa5070ce557d85e23906d56153bedfbbd65be0a826d/coppafish-0.1.3.tar.gz#sha256=c5c9da063c019771f6ea28d45e571952b92a8cbbb0f7dfd6f4c588a366f05188
2022-08-22T18:13:58,605   Removed coppafish==0.1.3 from https://files.pythonhosted.org/packages/a7/58/b11739cbb358beae6fa5070ce557d85e23906d56153bedfbbd65be0a826d/coppafish-0.1.3.tar.gz#sha256=c5c9da063c019771f6ea28d45e571952b92a8cbbb0f7dfd6f4c588a366f05188 from build tracker '/tmp/pip-build-tracker-s8up2krb'
2022-08-22T18:13:58,618 Created temporary directory: /tmp/pip-unpack-2a8aekeq
2022-08-22T18:13:58,620 Building wheels for collected packages: coppafish
2022-08-22T18:13:58,630   Created temporary directory: /tmp/pip-wheel-xzujn8v6
2022-08-22T18:13:58,631   Building wheel for coppafish (setup.py): started
2022-08-22T18:13:58,633   Destination directory: /tmp/pip-wheel-xzujn8v6
2022-08-22T18:13:58,633   Running command python setup.py bdist_wheel
2022-08-22T18:14:05,590   running bdist_wheel
2022-08-22T18:14:06,984   running build
2022-08-22T18:14:06,985   running build_py
2022-08-22T18:14:07,645   creating build
2022-08-22T18:14:07,645   creating build/lib
2022-08-22T18:14:07,646   creating build/lib/coppafish
2022-08-22T18:14:07,649   copying coppafish/__main__.py -> build/lib/coppafish
2022-08-22T18:14:07,653   copying coppafish/__init__.py -> build/lib/coppafish
2022-08-22T18:14:07,656   copying coppafish/_version.py -> build/lib/coppafish
2022-08-22T18:14:07,661   creating build/lib/coppafish/pipeline
2022-08-22T18:14:07,663   copying coppafish/pipeline/find_spots.py -> build/lib/coppafish/pipeline
2022-08-22T18:14:07,668   copying coppafish/pipeline/register_initial.py -> build/lib/coppafish/pipeline
2022-08-22T18:14:07,673   copying coppafish/pipeline/call_reference_spots.py -> build/lib/coppafish/pipeline
2022-08-22T18:14:07,678   copying coppafish/pipeline/basic_info.py -> build/lib/coppafish/pipeline
2022-08-22T18:14:07,682   copying coppafish/pipeline/__init__.py -> build/lib/coppafish/pipeline
2022-08-22T18:14:07,686   copying coppafish/pipeline/omp.py -> build/lib/coppafish/pipeline
2022-08-22T18:14:07,691   copying coppafish/pipeline/get_reference_spots.py -> build/lib/coppafish/pipeline
2022-08-22T18:14:07,695   copying coppafish/pipeline/register.py -> build/lib/coppafish/pipeline
2022-08-22T18:14:07,699   copying coppafish/pipeline/stitch.py -> build/lib/coppafish/pipeline
2022-08-22T18:14:07,704   copying coppafish/pipeline/extract_run.py -> build/lib/coppafish/pipeline
2022-08-22T18:14:07,709   copying coppafish/pipeline/run.py -> build/lib/coppafish/pipeline
2022-08-22T18:14:07,714   creating build/lib/coppafish/extract
2022-08-22T18:14:07,716   copying coppafish/extract/base.py -> build/lib/coppafish/extract
2022-08-22T18:14:07,720   copying coppafish/extract/__init__.py -> build/lib/coppafish/extract
2022-08-22T18:14:07,724   copying coppafish/extract/deconvolution.py -> build/lib/coppafish/extract
2022-08-22T18:14:07,728   copying coppafish/extract/fstack.py -> build/lib/coppafish/extract
2022-08-22T18:14:07,732   copying coppafish/extract/scale.py -> build/lib/coppafish/extract
2022-08-22T18:14:07,738   creating build/lib/coppafish/stitch
2022-08-22T18:14:07,740   copying coppafish/stitch/starting_shifts.py -> build/lib/coppafish/stitch
2022-08-22T18:14:07,744   copying coppafish/stitch/check_shifts.py -> build/lib/coppafish/stitch
2022-08-22T18:14:07,748   copying coppafish/stitch/shift.py -> build/lib/coppafish/stitch
2022-08-22T18:14:07,753   copying coppafish/stitch/__init__.py -> build/lib/coppafish/stitch
2022-08-22T18:14:07,757   copying coppafish/stitch/tile_origin.py -> build/lib/coppafish/stitch
2022-08-22T18:14:07,762   creating build/lib/coppafish/call_spots
2022-08-22T18:14:07,764   copying coppafish/call_spots/background.py -> build/lib/coppafish/call_spots
2022-08-22T18:14:07,768   copying coppafish/call_spots/base.py -> build/lib/coppafish/call_spots
2022-08-22T18:14:07,773   copying coppafish/call_spots/qual_check_optimised.py -> build/lib/coppafish/call_spots
2022-08-22T18:14:07,776   copying coppafish/call_spots/dot_product_optimised.py -> build/lib/coppafish/call_spots
2022-08-22T18:14:07,779   copying coppafish/call_spots/__init__.py -> build/lib/coppafish/call_spots
2022-08-22T18:14:07,783   copying coppafish/call_spots/background_optimised.py -> build/lib/coppafish/call_spots
2022-08-22T18:14:07,786   copying coppafish/call_spots/dot_product.py -> build/lib/coppafish/call_spots
2022-08-22T18:14:07,790   copying coppafish/call_spots/bleed_matrix.py -> build/lib/coppafish/call_spots
2022-08-22T18:14:07,795   copying coppafish/call_spots/qual_check.py -> build/lib/coppafish/call_spots
2022-08-22T18:14:07,800   creating build/lib/coppafish/plot
2022-08-22T18:14:07,802   copying coppafish/plot/raw.py -> build/lib/coppafish/plot
2022-08-22T18:14:07,806   copying coppafish/plot/__init__.py -> build/lib/coppafish/plot
2022-08-22T18:14:07,811   creating build/lib/coppafish/find_spots
2022-08-22T18:14:07,813   copying coppafish/find_spots/check_spots.py -> build/lib/coppafish/find_spots
2022-08-22T18:14:07,817   copying coppafish/find_spots/base.py -> build/lib/coppafish/find_spots
2022-08-22T18:14:07,822   copying coppafish/find_spots/detect.py -> build/lib/coppafish/find_spots
2022-08-22T18:14:07,825   copying coppafish/find_spots/__init__.py -> build/lib/coppafish/find_spots
2022-08-22T18:14:07,829   copying coppafish/find_spots/detect_optimised.py -> build/lib/coppafish/find_spots
2022-08-22T18:14:07,834   creating build/lib/coppafish/setup
2022-08-22T18:14:07,836   copying coppafish/setup/__init__.py -> build/lib/coppafish/setup
2022-08-22T18:14:07,840   copying coppafish/setup/file_names.py -> build/lib/coppafish/setup
2022-08-22T18:14:07,844   copying coppafish/setup/notebook.py -> build/lib/coppafish/setup
2022-08-22T18:14:07,850   copying coppafish/setup/tile_details.py -> build/lib/coppafish/setup
2022-08-22T18:14:07,854   copying coppafish/setup/config.py -> build/lib/coppafish/setup
2022-08-22T18:14:07,861   creating build/lib/coppafish/omp
2022-08-22T18:14:07,862   copying coppafish/omp/spots.py -> build/lib/coppafish/omp
2022-08-22T18:14:07,868   copying coppafish/omp/base.py -> build/lib/coppafish/omp
2022-08-22T18:14:07,871   copying coppafish/omp/__init__.py -> build/lib/coppafish/omp
2022-08-22T18:14:07,875   copying coppafish/omp/coefs.py -> build/lib/coppafish/omp
2022-08-22T18:14:07,880   copying coppafish/omp/coefs_optimised.py -> build/lib/coppafish/omp
2022-08-22T18:14:07,887   creating build/lib/coppafish/spot_colors
2022-08-22T18:14:07,889   copying coppafish/spot_colors/base.py -> build/lib/coppafish/spot_colors
2022-08-22T18:14:07,894   copying coppafish/spot_colors/base_optimised.py -> build/lib/coppafish/spot_colors
2022-08-22T18:14:07,898   copying coppafish/spot_colors/__init__.py -> build/lib/coppafish/spot_colors
2022-08-22T18:14:07,903   creating build/lib/coppafish/register
2022-08-22T18:14:07,905   copying coppafish/register/base.py -> build/lib/coppafish/register
2022-08-22T18:14:07,911   copying coppafish/register/__init__.py -> build/lib/coppafish/register
2022-08-22T18:14:07,914   copying coppafish/register/check_transforms.py -> build/lib/coppafish/register
2022-08-22T18:14:07,921   creating build/lib/coppafish/utils
2022-08-22T18:14:07,923   copying coppafish/utils/nd2.py -> build/lib/coppafish/utils
2022-08-22T18:14:07,928   copying coppafish/utils/base.py -> build/lib/coppafish/utils
2022-08-22T18:14:07,931   copying coppafish/utils/spot_images.py -> build/lib/coppafish/utils
2022-08-22T18:14:07,935   copying coppafish/utils/strel.py -> build/lib/coppafish/utils
2022-08-22T18:14:07,940   copying coppafish/utils/raw.py -> build/lib/coppafish/utils
2022-08-22T18:14:07,944   copying coppafish/utils/pciseq.py -> build/lib/coppafish/utils
2022-08-22T18:14:07,948   copying coppafish/utils/errors.py -> build/lib/coppafish/utils
2022-08-22T18:14:07,952   copying coppafish/utils/warnings.py -> build/lib/coppafish/utils
2022-08-22T18:14:07,955   copying coppafish/utils/__init__.py -> build/lib/coppafish/utils
2022-08-22T18:14:07,959   copying coppafish/utils/matlab.py -> build/lib/coppafish/utils
2022-08-22T18:14:07,963   copying coppafish/utils/npy.py -> build/lib/coppafish/utils
2022-08-22T18:14:07,969   creating build/lib/coppafish/extract/test
2022-08-22T18:14:07,971   copying coppafish/extract/test/test_fstack.py -> build/lib/coppafish/extract/test
2022-08-22T18:14:07,975   copying coppafish/extract/test/test_strip_hack.py -> build/lib/coppafish/extract/test
2022-08-22T18:14:07,978   copying coppafish/extract/test/__init__.py -> build/lib/coppafish/extract/test
2022-08-22T18:14:07,983   creating build/lib/coppafish/stitch/test
2022-08-22T18:14:07,985   copying coppafish/stitch/test/test_tile_origin.py -> build/lib/coppafish/stitch/test
2022-08-22T18:14:07,989   copying coppafish/stitch/test/__init__.py -> build/lib/coppafish/stitch/test
2022-08-22T18:14:07,992   copying coppafish/stitch/test/test_shift.py -> build/lib/coppafish/stitch/test
2022-08-22T18:14:07,998   creating build/lib/coppafish/call_spots/test
2022-08-22T18:14:08,000   copying coppafish/call_spots/test/test_bleed_matrix.py -> build/lib/coppafish/call_spots/test
2022-08-22T18:14:08,004   copying coppafish/call_spots/test/__init__.py -> build/lib/coppafish/call_spots/test
2022-08-22T18:14:08,008   copying coppafish/call_spots/test/test_optimised.py -> build/lib/coppafish/call_spots/test
2022-08-22T18:14:08,012   copying coppafish/call_spots/test/test_base.py -> build/lib/coppafish/call_spots/test
2022-08-22T18:14:08,018   creating build/lib/coppafish/plot/results_viewer
2022-08-22T18:14:08,020   copying coppafish/plot/results_viewer/base.py -> build/lib/coppafish/plot/results_viewer
2022-08-22T18:14:08,025   copying coppafish/plot/results_viewer/__init__.py -> build/lib/coppafish/plot/results_viewer
2022-08-22T18:14:08,029   creating build/lib/coppafish/plot/extract
2022-08-22T18:14:08,031   copying coppafish/plot/extract/viewer.py -> build/lib/coppafish/plot/extract
2022-08-22T18:14:08,036   copying coppafish/plot/extract/__init__.py -> build/lib/coppafish/plot/extract
2022-08-22T18:14:08,040   copying coppafish/plot/extract/diagnostics.py -> build/lib/coppafish/plot/extract
2022-08-22T18:14:08,045   creating build/lib/coppafish/plot/stitch
2022-08-22T18:14:08,047   copying coppafish/plot/stitch/shift.py -> build/lib/coppafish/plot/stitch
2022-08-22T18:14:08,052   copying coppafish/plot/stitch/__init__.py -> build/lib/coppafish/plot/stitch
2022-08-22T18:14:08,056   copying coppafish/plot/stitch/diagnostics.py -> build/lib/coppafish/plot/stitch
2022-08-22T18:14:08,061   copying coppafish/plot/stitch/point_clouds.py -> build/lib/coppafish/plot/stitch
2022-08-22T18:14:08,068   creating build/lib/coppafish/plot/call_spots
2022-08-22T18:14:08,069   copying coppafish/plot/call_spots/spot_colors.py -> build/lib/coppafish/plot/call_spots
2022-08-22T18:14:08,075   copying coppafish/plot/call_spots/background.py -> build/lib/coppafish/plot/call_spots
2022-08-22T18:14:08,080   copying coppafish/plot/call_spots/weight.py -> build/lib/coppafish/plot/call_spots
2022-08-22T18:14:08,084   copying coppafish/plot/call_spots/score_calc.py -> build/lib/coppafish/plot/call_spots
2022-08-22T18:14:08,088   copying coppafish/plot/call_spots/__init__.py -> build/lib/coppafish/plot/call_spots
2022-08-22T18:14:08,091   copying coppafish/plot/call_spots/dot_product.py -> build/lib/coppafish/plot/call_spots
2022-08-22T18:14:08,097   copying coppafish/plot/call_spots/bleed_matrix.py -> build/lib/coppafish/plot/call_spots
2022-08-22T18:14:08,101   copying coppafish/plot/call_spots/scaled_k_means.py -> build/lib/coppafish/plot/call_spots
2022-08-22T18:14:08,105   copying coppafish/plot/call_spots/gene_counts.py -> build/lib/coppafish/plot/call_spots
2022-08-22T18:14:08,111   creating build/lib/coppafish/plot/find_spots
2022-08-22T18:14:08,113   copying coppafish/plot/find_spots/n_spots.py -> build/lib/coppafish/plot/find_spots
2022-08-22T18:14:08,117   copying coppafish/plot/find_spots/viewer.py -> build/lib/coppafish/plot/find_spots
2022-08-22T18:14:08,123   copying coppafish/plot/find_spots/__init__.py -> build/lib/coppafish/plot/find_spots
2022-08-22T18:14:08,129   creating build/lib/coppafish/plot/omp
2022-08-22T18:14:08,131   copying coppafish/plot/omp/track_fit.py -> build/lib/coppafish/plot/omp
2022-08-22T18:14:08,136   copying coppafish/plot/omp/__init__.py -> build/lib/coppafish/plot/omp
2022-08-22T18:14:08,140   copying coppafish/plot/omp/score_shape.py -> build/lib/coppafish/plot/omp
2022-08-22T18:14:08,145   copying coppafish/plot/omp/coefs.py -> build/lib/coppafish/plot/omp
2022-08-22T18:14:08,152   copying coppafish/plot/omp/score_hist.py -> build/lib/coppafish/plot/omp
2022-08-22T18:14:08,159   creating build/lib/coppafish/plot/register
2022-08-22T18:14:08,161   copying coppafish/plot/register/icp.py -> build/lib/coppafish/plot/register
2022-08-22T18:14:08,168   copying coppafish/plot/register/shift.py -> build/lib/coppafish/plot/register
2022-08-22T18:14:08,172   copying coppafish/plot/register/__init__.py -> build/lib/coppafish/plot/register
2022-08-22T18:14:08,176   copying coppafish/plot/register/diagnostics.py -> build/lib/coppafish/plot/register
2022-08-22T18:14:08,183   creating build/lib/coppafish/find_spots/test
2022-08-22T18:14:08,184   copying coppafish/find_spots/test/__init__.py -> build/lib/coppafish/find_spots/test
2022-08-22T18:14:08,188   copying coppafish/find_spots/test/test_neighbour.py -> build/lib/coppafish/find_spots/test
2022-08-22T18:14:08,192   copying coppafish/find_spots/test/test_optimised.py -> build/lib/coppafish/find_spots/test
2022-08-22T18:14:08,196   copying coppafish/find_spots/test/test_base.py -> build/lib/coppafish/find_spots/test
2022-08-22T18:14:08,200   copying coppafish/find_spots/test/random_spot.py -> build/lib/coppafish/find_spots/test
2022-08-22T18:14:08,204   creating build/lib/coppafish/setup/test
2022-08-22T18:14:08,206   copying coppafish/setup/test/test_notebook.py -> build/lib/coppafish/setup/test
2022-08-22T18:14:08,210   copying coppafish/setup/test/__init__.py -> build/lib/coppafish/setup/test
2022-08-22T18:14:08,214   copying coppafish/setup/test/test_tilepos.py -> build/lib/coppafish/setup/test
2022-08-22T18:14:08,217   copying coppafish/setup/test/test_config.py -> build/lib/coppafish/setup/test
2022-08-22T18:14:08,222   creating build/lib/coppafish/omp/test
2022-08-22T18:14:08,224   copying coppafish/omp/test/test_all.py -> build/lib/coppafish/omp/test
2022-08-22T18:14:08,228   copying coppafish/omp/test/__init__.py -> build/lib/coppafish/omp/test
2022-08-22T18:14:08,231   copying coppafish/omp/test/test_optimised.py -> build/lib/coppafish/omp/test
2022-08-22T18:14:08,237   creating build/lib/coppafish/spot_colors/test
2022-08-22T18:14:08,239   copying coppafish/spot_colors/test/test_spot_colors.py -> build/lib/coppafish/spot_colors/test
2022-08-22T18:14:08,243   copying coppafish/spot_colors/test/__init__.py -> build/lib/coppafish/spot_colors/test
2022-08-22T18:14:08,246   copying coppafish/spot_colors/test/data_initialise.py -> build/lib/coppafish/spot_colors/test
2022-08-22T18:14:08,252   creating build/lib/coppafish/register/test
2022-08-22T18:14:08,253   copying coppafish/register/test/__init__.py -> build/lib/coppafish/register/test
2022-08-22T18:14:08,256   copying coppafish/register/test/test_base.py -> build/lib/coppafish/register/test
2022-08-22T18:14:08,262   creating build/lib/coppafish/utils/morphology
2022-08-22T18:14:08,264   copying coppafish/utils/morphology/base.py -> build/lib/coppafish/utils/morphology
2022-08-22T18:14:08,268   copying coppafish/utils/morphology/filter_optimised.py -> build/lib/coppafish/utils/morphology
2022-08-22T18:14:08,272   copying coppafish/utils/morphology/__init__.py -> build/lib/coppafish/utils/morphology
2022-08-22T18:14:08,275   copying coppafish/utils/morphology/filter.py -> build/lib/coppafish/utils/morphology
2022-08-22T18:14:08,281   creating build/lib/coppafish/utils/test
2022-08-22T18:14:08,282   copying coppafish/utils/test/__init__.py -> build/lib/coppafish/utils/test
2022-08-22T18:14:08,286   copying coppafish/utils/test/test_optimised.py -> build/lib/coppafish/utils/test
2022-08-22T18:14:08,289   copying coppafish/utils/test/test_npy.py -> build/lib/coppafish/utils/test
2022-08-22T18:14:08,293   copying coppafish/utils/test/test_morphology.py -> build/lib/coppafish/utils/test
2022-08-22T18:14:08,303   copying coppafish/setup/settings.default.ini -> build/lib/coppafish/setup
2022-08-22T18:14:08,310   copying coppafish/setup/notebook_comments.json -> build/lib/coppafish/setup
2022-08-22T18:14:08,317   copying coppafish/setup/dye_camera_laser_raw_intensity.csv -> build/lib/coppafish/setup
2022-08-22T18:14:09,065   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-08-22T18:14:09,065     warnings.warn(
2022-08-22T18:14:09,727   installing to build/bdist.linux-armv7l/wheel
2022-08-22T18:14:09,727   running install
2022-08-22T18:14:09,791   running install_lib
2022-08-22T18:14:10,455   creating build/bdist.linux-armv7l
2022-08-22T18:14:10,456   creating build/bdist.linux-armv7l/wheel
2022-08-22T18:14:10,459   creating build/bdist.linux-armv7l/wheel/coppafish
2022-08-22T18:14:10,462   creating build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:14:10,463   copying build/lib/coppafish/pipeline/find_spots.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:14:10,468   copying build/lib/coppafish/pipeline/register_initial.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:14:10,472   copying build/lib/coppafish/pipeline/call_reference_spots.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:14:10,477   copying build/lib/coppafish/pipeline/basic_info.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:14:10,481   copying build/lib/coppafish/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:14:10,484   copying build/lib/coppafish/pipeline/omp.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:14:10,489   copying build/lib/coppafish/pipeline/get_reference_spots.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:14:10,493   copying build/lib/coppafish/pipeline/register.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:14:10,497   copying build/lib/coppafish/pipeline/stitch.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:14:10,502   copying build/lib/coppafish/pipeline/extract_run.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:14:10,506   copying build/lib/coppafish/pipeline/run.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-22T18:14:10,512   creating build/bdist.linux-armv7l/wheel/coppafish/extract
2022-08-22T18:14:10,513   copying build/lib/coppafish/extract/base.py -> build/bdist.linux-armv7l/wheel/coppafish/extract
2022-08-22T18:14:10,518   copying build/lib/coppafish/extract/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/extract
2022-08-22T18:14:10,521   copying build/lib/coppafish/extract/deconvolution.py -> build/bdist.linux-armv7l/wheel/coppafish/extract
2022-08-22T18:14:10,525   copying build/lib/coppafish/extract/fstack.py -> build/bdist.linux-armv7l/wheel/coppafish/extract
2022-08-22T18:14:10,530   copying build/lib/coppafish/extract/scale.py -> build/bdist.linux-armv7l/wheel/coppafish/extract
2022-08-22T18:14:10,534   creating build/bdist.linux-armv7l/wheel/coppafish/extract/test
2022-08-22T18:14:10,536   copying build/lib/coppafish/extract/test/test_fstack.py -> build/bdist.linux-armv7l/wheel/coppafish/extract/test
2022-08-22T18:14:10,539   copying build/lib/coppafish/extract/test/test_strip_hack.py -> build/bdist.linux-armv7l/wheel/coppafish/extract/test
2022-08-22T18:14:10,543   copying build/lib/coppafish/extract/test/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/extract/test
2022-08-22T18:14:10,546   copying build/lib/coppafish/__main__.py -> build/bdist.linux-armv7l/wheel/coppafish
2022-08-22T18:14:10,550   creating build/bdist.linux-armv7l/wheel/coppafish/stitch
2022-08-22T18:14:10,551   copying build/lib/coppafish/stitch/starting_shifts.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch
2022-08-22T18:14:10,555   copying build/lib/coppafish/stitch/check_shifts.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch
2022-08-22T18:14:10,559   copying build/lib/coppafish/stitch/shift.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch
2022-08-22T18:14:10,564   copying build/lib/coppafish/stitch/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch
2022-08-22T18:14:10,567   copying build/lib/coppafish/stitch/tile_origin.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch
2022-08-22T18:14:10,571   creating build/bdist.linux-armv7l/wheel/coppafish/stitch/test
2022-08-22T18:14:10,573   copying build/lib/coppafish/stitch/test/test_tile_origin.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch/test
2022-08-22T18:14:10,576   copying build/lib/coppafish/stitch/test/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch/test
2022-08-22T18:14:10,580   copying build/lib/coppafish/stitch/test/test_shift.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch/test
2022-08-22T18:14:10,585   creating build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:14:10,586   copying build/lib/coppafish/call_spots/background.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:14:10,590   copying build/lib/coppafish/call_spots/base.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:14:10,594   copying build/lib/coppafish/call_spots/qual_check_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:14:10,598   copying build/lib/coppafish/call_spots/dot_product_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:14:10,601   copying build/lib/coppafish/call_spots/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:14:10,605   copying build/lib/coppafish/call_spots/background_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:14:10,608   copying build/lib/coppafish/call_spots/dot_product.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:14:10,612   copying build/lib/coppafish/call_spots/bleed_matrix.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:14:10,617   copying build/lib/coppafish/call_spots/qual_check.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-22T18:14:10,622   creating build/bdist.linux-armv7l/wheel/coppafish/call_spots/test
2022-08-22T18:14:10,623   copying build/lib/coppafish/call_spots/test/test_bleed_matrix.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots/test
2022-08-22T18:14:10,627   copying build/lib/coppafish/call_spots/test/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots/test
2022-08-22T18:14:10,630   copying build/lib/coppafish/call_spots/test/test_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots/test
2022-08-22T18:14:10,634   copying build/lib/coppafish/call_spots/test/test_base.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots/test
2022-08-22T18:14:10,638   copying build/lib/coppafish/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish
2022-08-22T18:14:10,642   creating build/bdist.linux-armv7l/wheel/coppafish/plot
2022-08-22T18:14:10,645   creating build/bdist.linux-armv7l/wheel/coppafish/plot/results_viewer
2022-08-22T18:14:10,646   copying build/lib/coppafish/plot/results_viewer/base.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/results_viewer
2022-08-22T18:14:10,653   copying build/lib/coppafish/plot/results_viewer/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/results_viewer
2022-08-22T18:14:10,657   creating build/bdist.linux-armv7l/wheel/coppafish/plot/extract
2022-08-22T18:14:10,658   copying build/lib/coppafish/plot/extract/viewer.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/extract
2022-08-22T18:14:10,663   copying build/lib/coppafish/plot/extract/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/extract
2022-08-22T18:14:10,667   copying build/lib/coppafish/plot/extract/diagnostics.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/extract
2022-08-22T18:14:10,671   copying build/lib/coppafish/plot/raw.py -> build/bdist.linux-armv7l/wheel/coppafish/plot
2022-08-22T18:14:10,676   creating build/bdist.linux-armv7l/wheel/coppafish/plot/stitch
2022-08-22T18:14:10,678   copying build/lib/coppafish/plot/stitch/shift.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/stitch
2022-08-22T18:14:10,683   copying build/lib/coppafish/plot/stitch/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/stitch
2022-08-22T18:14:10,686   copying build/lib/coppafish/plot/stitch/diagnostics.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/stitch
2022-08-22T18:14:10,691   copying build/lib/coppafish/plot/stitch/point_clouds.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/stitch
2022-08-22T18:14:10,697   creating build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:14:10,698   copying build/lib/coppafish/plot/call_spots/spot_colors.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:14:10,704   copying build/lib/coppafish/plot/call_spots/background.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:14:10,709   copying build/lib/coppafish/plot/call_spots/weight.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:14:10,714   copying build/lib/coppafish/plot/call_spots/score_calc.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:14:10,718   copying build/lib/coppafish/plot/call_spots/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:14:10,721   copying build/lib/coppafish/plot/call_spots/dot_product.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:14:10,726   copying build/lib/coppafish/plot/call_spots/bleed_matrix.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:14:10,730   copying build/lib/coppafish/plot/call_spots/scaled_k_means.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:14:10,734   copying build/lib/coppafish/plot/call_spots/gene_counts.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-22T18:14:10,739   copying build/lib/coppafish/plot/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot
2022-08-22T18:14:10,743   creating build/bdist.linux-armv7l/wheel/coppafish/plot/find_spots
2022-08-22T18:14:10,745   copying build/lib/coppafish/plot/find_spots/n_spots.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/find_spots
2022-08-22T18:14:10,749   copying build/lib/coppafish/plot/find_spots/viewer.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/find_spots
2022-08-22T18:14:10,754   copying build/lib/coppafish/plot/find_spots/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/find_spots
2022-08-22T18:14:10,758   creating build/bdist.linux-armv7l/wheel/coppafish/plot/omp
2022-08-22T18:14:10,760   copying build/lib/coppafish/plot/omp/track_fit.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/omp
2022-08-22T18:14:10,764   copying build/lib/coppafish/plot/omp/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/omp
2022-08-22T18:14:10,768   copying build/lib/coppafish/plot/omp/score_shape.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/omp
2022-08-22T18:14:10,772   copying build/lib/coppafish/plot/omp/coefs.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/omp
2022-08-22T18:14:10,777   copying build/lib/coppafish/plot/omp/score_hist.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/omp
2022-08-22T18:14:10,783   creating build/bdist.linux-armv7l/wheel/coppafish/plot/register
2022-08-22T18:14:10,785   copying build/lib/coppafish/plot/register/icp.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/register
2022-08-22T18:14:10,790   copying build/lib/coppafish/plot/register/shift.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/register
2022-08-22T18:14:10,795   copying build/lib/coppafish/plot/register/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/register
2022-08-22T18:14:10,798   copying build/lib/coppafish/plot/register/diagnostics.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/register
2022-08-22T18:14:10,804   creating build/bdist.linux-armv7l/wheel/coppafish/find_spots
2022-08-22T18:14:10,805   copying build/lib/coppafish/find_spots/check_spots.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots
2022-08-22T18:14:10,810   copying build/lib/coppafish/find_spots/base.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots
2022-08-22T18:14:10,814   copying build/lib/coppafish/find_spots/detect.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots
2022-08-22T18:14:10,818   copying build/lib/coppafish/find_spots/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots
2022-08-22T18:14:10,822   copying build/lib/coppafish/find_spots/detect_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots
2022-08-22T18:14:10,827   creating build/bdist.linux-armv7l/wheel/coppafish/find_spots/test
2022-08-22T18:14:10,828   copying build/lib/coppafish/find_spots/test/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots/test
2022-08-22T18:14:10,832   copying build/lib/coppafish/find_spots/test/test_neighbour.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots/test
2022-08-22T18:14:10,836   copying build/lib/coppafish/find_spots/test/test_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots/test
2022-08-22T18:14:10,840   copying build/lib/coppafish/find_spots/test/test_base.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots/test
2022-08-22T18:14:10,844   copying build/lib/coppafish/find_spots/test/random_spot.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots/test
2022-08-22T18:14:10,848   creating build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-22T18:14:10,850   copying build/lib/coppafish/setup/notebook_comments.json -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-22T18:14:10,856   copying build/lib/coppafish/setup/dye_camera_laser_raw_intensity.csv -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-22T18:14:10,862   copying build/lib/coppafish/setup/settings.default.ini -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-22T18:14:10,872   copying build/lib/coppafish/setup/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-22T18:14:10,876   copying build/lib/coppafish/setup/file_names.py -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-22T18:14:10,880   copying build/lib/coppafish/setup/notebook.py -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-22T18:14:10,888   copying build/lib/coppafish/setup/tile_details.py -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-22T18:14:10,893   copying build/lib/coppafish/setup/config.py -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-22T18:14:10,901   creating build/bdist.linux-armv7l/wheel/coppafish/setup/test
2022-08-22T18:14:10,903   copying build/lib/coppafish/setup/test/test_notebook.py -> build/bdist.linux-armv7l/wheel/coppafish/setup/test
2022-08-22T18:14:10,910   copying build/lib/coppafish/setup/test/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/setup/test
2022-08-22T18:14:10,915   copying build/lib/coppafish/setup/test/test_tilepos.py -> build/bdist.linux-armv7l/wheel/coppafish/setup/test
2022-08-22T18:14:10,918   copying build/lib/coppafish/setup/test/test_config.py -> build/bdist.linux-armv7l/wheel/coppafish/setup/test
2022-08-22T18:14:10,923   creating build/bdist.linux-armv7l/wheel/coppafish/omp
2022-08-22T18:14:10,925   copying build/lib/coppafish/omp/spots.py -> build/bdist.linux-armv7l/wheel/coppafish/omp
2022-08-22T18:14:10,930   copying build/lib/coppafish/omp/base.py -> build/bdist.linux-armv7l/wheel/coppafish/omp
2022-08-22T18:14:10,933   copying build/lib/coppafish/omp/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/omp
2022-08-22T18:14:10,936   copying build/lib/coppafish/omp/coefs.py -> build/bdist.linux-armv7l/wheel/coppafish/omp
2022-08-22T18:14:10,942   copying build/lib/coppafish/omp/coefs_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/omp
2022-08-22T18:14:10,949   creating build/bdist.linux-armv7l/wheel/coppafish/omp/test
2022-08-22T18:14:10,950   copying build/lib/coppafish/omp/test/test_all.py -> build/bdist.linux-armv7l/wheel/coppafish/omp/test
2022-08-22T18:14:10,954   copying build/lib/coppafish/omp/test/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/omp/test
2022-08-22T18:14:10,958   copying build/lib/coppafish/omp/test/test_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/omp/test
2022-08-22T18:14:10,963   creating build/bdist.linux-armv7l/wheel/coppafish/spot_colors
2022-08-22T18:14:10,965   copying build/lib/coppafish/spot_colors/base.py -> build/bdist.linux-armv7l/wheel/coppafish/spot_colors
2022-08-22T18:14:10,969   copying build/lib/coppafish/spot_colors/base_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/spot_colors
2022-08-22T18:14:10,974   copying build/lib/coppafish/spot_colors/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/spot_colors
2022-08-22T18:14:10,978   creating build/bdist.linux-armv7l/wheel/coppafish/spot_colors/test
2022-08-22T18:14:10,979   copying build/lib/coppafish/spot_colors/test/test_spot_colors.py -> build/bdist.linux-armv7l/wheel/coppafish/spot_colors/test
2022-08-22T18:14:10,984   copying build/lib/coppafish/spot_colors/test/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/spot_colors/test
2022-08-22T18:14:10,987   copying build/lib/coppafish/spot_colors/test/data_initialise.py -> build/bdist.linux-armv7l/wheel/coppafish/spot_colors/test
2022-08-22T18:14:10,991   copying build/lib/coppafish/_version.py -> build/bdist.linux-armv7l/wheel/coppafish
2022-08-22T18:14:10,995   creating build/bdist.linux-armv7l/wheel/coppafish/register
2022-08-22T18:14:10,997   copying build/lib/coppafish/register/base.py -> build/bdist.linux-armv7l/wheel/coppafish/register
2022-08-22T18:14:11,002   copying build/lib/coppafish/register/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/register
2022-08-22T18:14:11,006   copying build/lib/coppafish/register/check_transforms.py -> build/bdist.linux-armv7l/wheel/coppafish/register
2022-08-22T18:14:11,011   creating build/bdist.linux-armv7l/wheel/coppafish/register/test
2022-08-22T18:14:11,012   copying build/lib/coppafish/register/test/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/register/test
2022-08-22T18:14:11,015   copying build/lib/coppafish/register/test/test_base.py -> build/bdist.linux-armv7l/wheel/coppafish/register/test
2022-08-22T18:14:11,022   creating build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:14:11,023   copying build/lib/coppafish/utils/nd2.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:14:11,028   copying build/lib/coppafish/utils/base.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:14:11,031   copying build/lib/coppafish/utils/spot_images.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:14:11,035   copying build/lib/coppafish/utils/strel.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:14:11,039   copying build/lib/coppafish/utils/raw.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:14:11,043   copying build/lib/coppafish/utils/pciseq.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:14:11,046   copying build/lib/coppafish/utils/errors.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:14:11,051   copying build/lib/coppafish/utils/warnings.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:14:11,054   copying build/lib/coppafish/utils/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:14:11,057   copying build/lib/coppafish/utils/matlab.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:14:11,061   copying build/lib/coppafish/utils/npy.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-22T18:14:11,067   creating build/bdist.linux-armv7l/wheel/coppafish/utils/morphology
2022-08-22T18:14:11,068   copying build/lib/coppafish/utils/morphology/base.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/morphology
2022-08-22T18:14:11,072   copying build/lib/coppafish/utils/morphology/filter_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/morphology
2022-08-22T18:14:11,076   copying build/lib/coppafish/utils/morphology/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/morphology
2022-08-22T18:14:11,080   copying build/lib/coppafish/utils/morphology/filter.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/morphology
2022-08-22T18:14:11,084   creating build/bdist.linux-armv7l/wheel/coppafish/utils/test
2022-08-22T18:14:11,086   copying build/lib/coppafish/utils/test/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/test
2022-08-22T18:14:11,089   copying build/lib/coppafish/utils/test/test_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/test
2022-08-22T18:14:11,093   copying build/lib/coppafish/utils/test/test_npy.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/test
2022-08-22T18:14:11,097   copying build/lib/coppafish/utils/test/test_morphology.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/test
2022-08-22T18:14:11,101   running install_egg_info
2022-08-22T18:14:12,461   running egg_info
2022-08-22T18:14:13,120   writing coppafish.egg-info/PKG-INFO
2022-08-22T18:14:13,687   writing dependency_links to coppafish.egg-info/dependency_links.txt
2022-08-22T18:14:16,513   writing requirements to coppafish.egg-info/requires.txt
2022-08-22T18:14:17,079   writing top-level names to coppafish.egg-info/top_level.txt
2022-08-22T18:14:17,227   reading manifest file 'coppafish.egg-info/SOURCES.txt'
2022-08-22T18:14:17,238   adding license file 'LICENSE.md'
2022-08-22T18:14:17,258   writing manifest file 'coppafish.egg-info/SOURCES.txt'
2022-08-22T18:14:17,262   Copying coppafish.egg-info to build/bdist.linux-armv7l/wheel/coppafish-0.1.3-py3.9.egg-info
2022-08-22T18:14:17,283   running install_scripts
2022-08-22T18:14:17,496   adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*")
2022-08-22T18:14:17,504   creating build/bdist.linux-armv7l/wheel/coppafish-0.1.3.dist-info/WHEEL
2022-08-22T18:14:17,509   creating '/tmp/pip-wheel-xzujn8v6/coppafish-0.1.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-08-22T18:14:17,514   adding 'coppafish/__init__.py'
2022-08-22T18:14:17,517   adding 'coppafish/__main__.py'
2022-08-22T18:14:17,519   adding 'coppafish/_version.py'
2022-08-22T18:14:17,522   adding 'coppafish/call_spots/__init__.py'
2022-08-22T18:14:17,525   adding 'coppafish/call_spots/background.py'
2022-08-22T18:14:17,528   adding 'coppafish/call_spots/background_optimised.py'
2022-08-22T18:14:17,533   adding 'coppafish/call_spots/base.py'
2022-08-22T18:14:17,539   adding 'coppafish/call_spots/bleed_matrix.py'
2022-08-22T18:14:17,542   adding 'coppafish/call_spots/dot_product.py'
2022-08-22T18:14:17,544   adding 'coppafish/call_spots/dot_product_optimised.py'
2022-08-22T18:14:17,547   adding 'coppafish/call_spots/qual_check.py'
2022-08-22T18:14:17,550   adding 'coppafish/call_spots/qual_check_optimised.py'
2022-08-22T18:14:17,553   adding 'coppafish/call_spots/test/__init__.py'
2022-08-22T18:14:17,556   adding 'coppafish/call_spots/test/test_base.py'
2022-08-22T18:14:17,560   adding 'coppafish/call_spots/test/test_bleed_matrix.py'
2022-08-22T18:14:17,563   adding 'coppafish/call_spots/test/test_optimised.py'
2022-08-22T18:14:17,567   adding 'coppafish/extract/__init__.py'
2022-08-22T18:14:17,570   adding 'coppafish/extract/base.py'
2022-08-22T18:14:17,574   adding 'coppafish/extract/deconvolution.py'
2022-08-22T18:14:17,578   adding 'coppafish/extract/fstack.py'
2022-08-22T18:14:17,582   adding 'coppafish/extract/scale.py'
2022-08-22T18:14:17,586   adding 'coppafish/extract/test/__init__.py'
2022-08-22T18:14:17,588   adding 'coppafish/extract/test/test_fstack.py'
2022-08-22T18:14:17,591   adding 'coppafish/extract/test/test_strip_hack.py'
2022-08-22T18:14:17,594   adding 'coppafish/find_spots/__init__.py'
2022-08-22T18:14:17,597   adding 'coppafish/find_spots/base.py'
2022-08-22T18:14:17,601   adding 'coppafish/find_spots/check_spots.py'
2022-08-22T18:14:17,603   adding 'coppafish/find_spots/detect.py'
2022-08-22T18:14:17,607   adding 'coppafish/find_spots/detect_optimised.py'
2022-08-22T18:14:17,610   adding 'coppafish/find_spots/test/__init__.py'
2022-08-22T18:14:17,613   adding 'coppafish/find_spots/test/random_spot.py'
2022-08-22T18:14:17,615   adding 'coppafish/find_spots/test/test_base.py'
2022-08-22T18:14:17,619   adding 'coppafish/find_spots/test/test_neighbour.py'
2022-08-22T18:14:17,622   adding 'coppafish/find_spots/test/test_optimised.py'
2022-08-22T18:14:17,625   adding 'coppafish/omp/__init__.py'
2022-08-22T18:14:17,627   adding 'coppafish/omp/base.py'
2022-08-22T18:14:17,634   adding 'coppafish/omp/coefs.py'
2022-08-22T18:14:17,641   adding 'coppafish/omp/coefs_optimised.py'
2022-08-22T18:14:17,648   adding 'coppafish/omp/spots.py'
2022-08-22T18:14:17,652   adding 'coppafish/omp/test/__init__.py'
2022-08-22T18:14:17,656   adding 'coppafish/omp/test/test_all.py'
2022-08-22T18:14:17,660   adding 'coppafish/omp/test/test_optimised.py'
2022-08-22T18:14:17,664   adding 'coppafish/pipeline/__init__.py'
2022-08-22T18:14:17,668   adding 'coppafish/pipeline/basic_info.py'
2022-08-22T18:14:17,673   adding 'coppafish/pipeline/call_reference_spots.py'
2022-08-22T18:14:17,680   adding 'coppafish/pipeline/extract_run.py'
2022-08-22T18:14:17,683   adding 'coppafish/pipeline/find_spots.py'
2022-08-22T18:14:17,686   adding 'coppafish/pipeline/get_reference_spots.py'
2022-08-22T18:14:17,692   adding 'coppafish/pipeline/omp.py'
2022-08-22T18:14:17,696   adding 'coppafish/pipeline/register.py'
2022-08-22T18:14:17,699   adding 'coppafish/pipeline/register_initial.py'
2022-08-22T18:14:17,703   adding 'coppafish/pipeline/run.py'
2022-08-22T18:14:17,707   adding 'coppafish/pipeline/stitch.py'
2022-08-22T18:14:17,711   adding 'coppafish/plot/__init__.py'
2022-08-22T18:14:17,714   adding 'coppafish/plot/raw.py'
2022-08-22T18:14:17,718   adding 'coppafish/plot/call_spots/__init__.py'
2022-08-22T18:14:17,722   adding 'coppafish/plot/call_spots/background.py'
2022-08-22T18:14:17,725   adding 'coppafish/plot/call_spots/bleed_matrix.py'
2022-08-22T18:14:17,731   adding 'coppafish/plot/call_spots/dot_product.py'
2022-08-22T18:14:17,736   adding 'coppafish/plot/call_spots/gene_counts.py'
2022-08-22T18:14:17,740   adding 'coppafish/plot/call_spots/scaled_k_means.py'
2022-08-22T18:14:17,743   adding 'coppafish/plot/call_spots/score_calc.py'
2022-08-22T18:14:17,749   adding 'coppafish/plot/call_spots/spot_colors.py'
2022-08-22T18:14:17,754   adding 'coppafish/plot/call_spots/weight.py'
2022-08-22T18:14:17,758   adding 'coppafish/plot/extract/__init__.py'
2022-08-22T18:14:17,761   adding 'coppafish/plot/extract/diagnostics.py'
2022-08-22T18:14:17,766   adding 'coppafish/plot/extract/viewer.py'
2022-08-22T18:14:17,769   adding 'coppafish/plot/find_spots/__init__.py'
2022-08-22T18:14:17,772   adding 'coppafish/plot/find_spots/n_spots.py'
2022-08-22T18:14:17,777   adding 'coppafish/plot/find_spots/viewer.py'
2022-08-22T18:14:17,781   adding 'coppafish/plot/omp/__init__.py'
2022-08-22T18:14:17,786   adding 'coppafish/plot/omp/coefs.py'
2022-08-22T18:14:17,791   adding 'coppafish/plot/omp/score_hist.py'
2022-08-22T18:14:17,795   adding 'coppafish/plot/omp/score_shape.py'
2022-08-22T18:14:17,799   adding 'coppafish/plot/omp/track_fit.py'
2022-08-22T18:14:17,802   adding 'coppafish/plot/register/__init__.py'
2022-08-22T18:14:17,806   adding 'coppafish/plot/register/diagnostics.py'
2022-08-22T18:14:17,811   adding 'coppafish/plot/register/icp.py'
2022-08-22T18:14:17,815   adding 'coppafish/plot/register/shift.py'
2022-08-22T18:14:17,818   adding 'coppafish/plot/results_viewer/__init__.py'
2022-08-22T18:14:17,826   adding 'coppafish/plot/results_viewer/base.py'
2022-08-22T18:14:17,829   adding 'coppafish/plot/stitch/__init__.py'
2022-08-22T18:14:17,833   adding 'coppafish/plot/stitch/diagnostics.py'
2022-08-22T18:14:17,839   adding 'coppafish/plot/stitch/point_clouds.py'
2022-08-22T18:14:17,844   adding 'coppafish/plot/stitch/shift.py'
2022-08-22T18:14:17,847   adding 'coppafish/register/__init__.py'
2022-08-22T18:14:17,854   adding 'coppafish/register/base.py'
2022-08-22T18:14:17,858   adding 'coppafish/register/check_transforms.py'
2022-08-22T18:14:17,861   adding 'coppafish/register/test/__init__.py'
2022-08-22T18:14:17,865   adding 'coppafish/register/test/test_base.py'
2022-08-22T18:14:17,868   adding 'coppafish/setup/__init__.py'
2022-08-22T18:14:17,873   adding 'coppafish/setup/config.py'
2022-08-22T18:14:17,878   adding 'coppafish/setup/dye_camera_laser_raw_intensity.csv'
2022-08-22T18:14:17,882   adding 'coppafish/setup/file_names.py'
2022-08-22T18:14:17,896   adding 'coppafish/setup/notebook.py'
2022-08-22T18:14:17,907   adding 'coppafish/setup/notebook_comments.json'
2022-08-22T18:14:17,921   adding 'coppafish/setup/settings.default.ini'
2022-08-22T18:14:17,924   adding 'coppafish/setup/tile_details.py'
2022-08-22T18:14:17,928   adding 'coppafish/setup/test/__init__.py'
2022-08-22T18:14:17,931   adding 'coppafish/setup/test/test_config.py'
2022-08-22T18:14:17,934   adding 'coppafish/setup/test/test_notebook.py'
2022-08-22T18:14:17,937   adding 'coppafish/setup/test/test_tilepos.py'
2022-08-22T18:14:17,940   adding 'coppafish/spot_colors/__init__.py'
2022-08-22T18:14:17,944   adding 'coppafish/spot_colors/base.py'
2022-08-22T18:14:17,949   adding 'coppafish/spot_colors/base_optimised.py'
2022-08-22T18:14:17,952   adding 'coppafish/spot_colors/test/__init__.py'
2022-08-22T18:14:17,955   adding 'coppafish/spot_colors/test/data_initialise.py'
2022-08-22T18:14:17,958   adding 'coppafish/spot_colors/test/test_spot_colors.py'
2022-08-22T18:14:17,962   adding 'coppafish/stitch/__init__.py'
2022-08-22T18:14:17,964   adding 'coppafish/stitch/check_shifts.py'
2022-08-22T18:14:17,973   adding 'coppafish/stitch/shift.py'
2022-08-22T18:14:17,976   adding 'coppafish/stitch/starting_shifts.py'
2022-08-22T18:14:17,979   adding 'coppafish/stitch/tile_origin.py'
2022-08-22T18:14:17,982   adding 'coppafish/stitch/test/__init__.py'
2022-08-22T18:14:17,986   adding 'coppafish/stitch/test/test_shift.py'
2022-08-22T18:14:17,989   adding 'coppafish/stitch/test/test_tile_origin.py'
2022-08-22T18:14:17,992   adding 'coppafish/utils/__init__.py'
2022-08-22T18:14:17,995   adding 'coppafish/utils/base.py'
2022-08-22T18:14:17,998   adding 'coppafish/utils/errors.py'
2022-08-22T18:14:18,002   adding 'coppafish/utils/matlab.py'
2022-08-22T18:14:18,005   adding 'coppafish/utils/nd2.py'
2022-08-22T18:14:18,010   adding 'coppafish/utils/npy.py'
2022-08-22T18:14:18,013   adding 'coppafish/utils/pciseq.py'
2022-08-22T18:14:18,016   adding 'coppafish/utils/raw.py'
2022-08-22T18:14:18,020   adding 'coppafish/utils/spot_images.py'
2022-08-22T18:14:18,024   adding 'coppafish/utils/strel.py'
2022-08-22T18:14:18,026   adding 'coppafish/utils/warnings.py'
2022-08-22T18:14:18,030   adding 'coppafish/utils/morphology/__init__.py'
2022-08-22T18:14:18,033   adding 'coppafish/utils/morphology/base.py'
2022-08-22T18:14:18,036   adding 'coppafish/utils/morphology/filter.py'
2022-08-22T18:14:18,039   adding 'coppafish/utils/morphology/filter_optimised.py'
2022-08-22T18:14:18,043   adding 'coppafish/utils/test/__init__.py'
2022-08-22T18:14:18,046   adding 'coppafish/utils/test/test_morphology.py'
2022-08-22T18:14:18,050   adding 'coppafish/utils/test/test_npy.py'
2022-08-22T18:14:18,053   adding 'coppafish/utils/test/test_optimised.py'
2022-08-22T18:14:18,057   adding 'coppafish-0.1.3.dist-info/LICENSE.md'
2022-08-22T18:14:18,059   adding 'coppafish-0.1.3.dist-info/METADATA'
2022-08-22T18:14:18,061   adding 'coppafish-0.1.3.dist-info/WHEEL'
2022-08-22T18:14:18,063   adding 'coppafish-0.1.3.dist-info/top_level.txt'
2022-08-22T18:14:18,069   adding 'coppafish-0.1.3.dist-info/RECORD'
2022-08-22T18:14:18,086   removing build/bdist.linux-armv7l/wheel
2022-08-22T18:14:18,431   Building wheel for coppafish (setup.py): finished with status 'done'
2022-08-22T18:14:18,448   Created wheel for coppafish: filename=coppafish-0.1.3-py3-none-any.whl size=316944 sha256=b1c0091267eb1e026c2529c9762e9ba81785c39ed742fd0629b19fe7614c911c
2022-08-22T18:14:18,450   Stored in directory: /tmp/pip-ephem-wheel-cache-urz98jou/wheels/7b/81/52/a21f2193c79213a4df2d110ccc91e9ed7c9cff0066e879b50c
2022-08-22T18:14:18,484 Successfully built coppafish
2022-08-22T18:14:18,512 Removed build tracker: '/tmp/pip-build-tracker-s8up2krb'