2022-08-22T20:02:16,694 Created temporary directory: /tmp/pip-ephem-wheel-cache-r11s3n4v 2022-08-22T20:02:16,699 Created temporary directory: /tmp/pip-build-tracker-xrtgbi8j 2022-08-22T20:02:16,700 Initialized build tracking at /tmp/pip-build-tracker-xrtgbi8j 2022-08-22T20:02:16,701 Created build tracker: /tmp/pip-build-tracker-xrtgbi8j 2022-08-22T20:02:16,701 Entered build tracker: /tmp/pip-build-tracker-xrtgbi8j 2022-08-22T20:02:16,702 Created temporary directory: /tmp/pip-wheel-sqb7ir9c 2022-08-22T20:02:16,814 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-22T20:02:16,823 2 location(s) to search for versions of celltk2: 2022-08-22T20:02:16,823 * https://pypi.org/simple/celltk2/ 2022-08-22T20:02:16,823 * https://www.piwheels.org/simple/celltk2/ 2022-08-22T20:02:16,824 Fetching project page and analyzing links: https://pypi.org/simple/celltk2/ 2022-08-22T20:02:16,825 Getting page https://pypi.org/simple/celltk2/ 2022-08-22T20:02:16,829 Found index url https://pypi.org/simple 2022-08-22T20:02:17,064 Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/ed/83/9f4882e169f9e3a0e94cb3b113f9d45d7b2c22ae3448fa5906093366a3a1/celltk2-0.4.0a0-py3-none-any.whl#sha256=14f4c7b1341a365e9feab2850c96e13d2b1ea5d8d17a0f17e52077baa126b9fd (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8) 2022-08-22T20:02:17,065 Found link https://files.pythonhosted.org/packages/81/99/f32cd7145396be309d76b0159c57e5bf42424efa7c7309920823ce9d07fa/celltk2-0.4.0a0.tar.gz#sha256=74dc00488a8d8fc455b36f8fd84bdfe44600b9909dde8f6f3da0b21e82716222 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.0a0 2022-08-22T20:02:17,066 Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/96/ef/2fa5812a59f2c7c6f4acb9f3ed5c532dc6b323a51ac15c9365f0fbf5ff5f/celltk2-0.4.0-py3-none-any.whl#sha256=389b63524bfb3902401aef3812e02a8598ebf60b565adc714808642299e002a6 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8) 2022-08-22T20:02:17,067 Found link https://files.pythonhosted.org/packages/22/f4/c83a2ae22ab7676b54df22729ffb2f87896ad3350cceb6c21fcee1393af1/celltk2-0.4.0.tar.gz#sha256=1d18823e382d6c0cfb793feb2ed2275ac0dcf7ba793a105d5af907792dae6aed (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.0 2022-08-22T20:02:17,068 Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/e2/30/0b53d24c5b9ad695b0b7b0725be4de60dd67419bfddd5f6ce3a708b20f02/celltk2-0.4.1-py3-none-any.whl#sha256=15c64413b8007cfa60a531ebe2667db893f578676fd7ebfc51696089a4008b0e (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8) 2022-08-22T20:02:17,069 Found link https://files.pythonhosted.org/packages/78/c7/350c706f5ba707f2b59a1325ee39c108bc3811b971fdab623255ccaa052a/celltk2-0.4.1.tar.gz#sha256=c53797329df322c75af3dbdaf3d34dd6e879ee27a485fd4e45390f2790ed312c (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.1 2022-08-22T20:02:17,070 Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/2c/40/3bb1c0cad1d671567680ac52f4ae01fb685ff632e524e1cb5d4ff168e1a6/celltk2-0.4.2-py3-none-any.whl#sha256=7ae070ee4f640e61aa872749020d283c5cb176fd736424f1cf8cab4b028e77e1 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8) 2022-08-22T20:02:17,071 Found link https://files.pythonhosted.org/packages/e9/f9/04707142add1a66b233fa06478e81e649d8fac5dc0a01cb9ab8f0df8ba98/celltk2-0.4.2.tar.gz#sha256=440e29eb94cff30aa946c95b2d8deccdfdb880926754880cfb66cecb94597581 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.2 2022-08-22T20:02:17,072 Fetching project page and analyzing links: https://www.piwheels.org/simple/celltk2/ 2022-08-22T20:02:17,073 Getting page https://www.piwheels.org/simple/celltk2/ 2022-08-22T20:02:17,075 Found index url https://www.piwheels.org/simple 2022-08-22T20:02:17,289 Skipping link: No binaries permitted for celltk2: https://www.piwheels.org/simple/celltk2/celltk2-0.4.1-py3-none-any.whl#sha256=fa6b7fd862d4d4b473c7808dd0d80d8ac5096586ad0acfbe989d38f6b0ad0e66 (from https://www.piwheels.org/simple/celltk2/) (requires-python:>=3.8) 2022-08-22T20:02:17,290 Skipping link: No binaries permitted for celltk2: https://www.piwheels.org/simple/celltk2/celltk2-0.4.0-py3-none-any.whl#sha256=91b6c76a817162ea6e7f1a80f8a0079d51ac517258120c8e819a35ff3646dc4c (from https://www.piwheels.org/simple/celltk2/) (requires-python:>=3.8) 2022-08-22T20:02:17,290 Skipping link: No binaries permitted for celltk2: https://www.piwheels.org/simple/celltk2/celltk2-0.4.0a0-py3-none-any.whl#sha256=103ddfed3505ea4150aded5a67adb295d476eba6c0f924fcc85f91dd98bd53bf (from https://www.piwheels.org/simple/celltk2/) (requires-python:>=3.8) 2022-08-22T20:02:17,291 Skipping link: not a file: https://www.piwheels.org/simple/celltk2/ 2022-08-22T20:02:17,291 Skipping link: not a file: https://pypi.org/simple/celltk2/ 2022-08-22T20:02:17,337 Given no hashes to check 1 links for project 'celltk2': discarding no candidates 2022-08-22T20:02:17,379 Collecting celltk2==0.4.2 2022-08-22T20:02:17,383 Created temporary directory: /tmp/pip-unpack-odiis7fj 2022-08-22T20:02:18,445 Downloading celltk2-0.4.2.tar.gz (7.0 MB) 2022-08-22T20:02:20,966 Added celltk2==0.4.2 from https://files.pythonhosted.org/packages/e9/f9/04707142add1a66b233fa06478e81e649d8fac5dc0a01cb9ab8f0df8ba98/celltk2-0.4.2.tar.gz#sha256=440e29eb94cff30aa946c95b2d8deccdfdb880926754880cfb66cecb94597581 to build tracker '/tmp/pip-build-tracker-xrtgbi8j' 2022-08-22T20:02:20,975 Created temporary directory: /tmp/pip-build-env-qkspf8lh 2022-08-22T20:02:20,995 Created temporary directory: /tmp/pip-standalone-pip-1bvpf50q 2022-08-22T20:02:23,292 Installing build dependencies: started 2022-08-22T20:02:23,295 Running command pip subprocess to install build dependencies 2022-08-22T20:02:34,495 Using pip 22.1.2 from /tmp/pip-standalone-pip-1bvpf50q/__env_pip__.zip/pip (python 3.9) 2022-08-22T20:02:36,811 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-22T20:02:41,114 Collecting setuptools>=42 2022-08-22T20:02:41,385 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.2.0-py3-none-any.whl (1.2 MB) 2022-08-22T20:02:52,263 Installing collected packages: setuptools 2022-08-22T20:02:57,902 Successfully installed setuptools-65.2.0 2022-08-22T20:02:58,115 --- Logging error --- 2022-08-22T20:02:58,131 Traceback (most recent call last): 2022-08-22T20:02:58,132 File "/tmp/pip-standalone-pip-1bvpf50q/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-08-22T20:02:58,132 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-08-22T20:02:58,132 File "/tmp/pip-standalone-pip-1bvpf50q/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-08-22T20:02:58,133 extend(render(renderable, render_options)) 2022-08-22T20:02:58,133 File "/tmp/pip-standalone-pip-1bvpf50q/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-08-22T20:02:58,133 for render_output in iter_render: 2022-08-22T20:02:58,134 File "/tmp/pip-standalone-pip-1bvpf50q/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-08-22T20:02:58,134 for line in lines: 2022-08-22T20:02:58,134 File "/tmp/pip-standalone-pip-1bvpf50q/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-08-22T20:02:58,135 for segment in segments: 2022-08-22T20:02:58,135 File "/tmp/pip-standalone-pip-1bvpf50q/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-08-22T20:02:58,135 renderable = rich_cast(renderable) 2022-08-22T20:02:58,135 File "/tmp/pip-standalone-pip-1bvpf50q/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-08-22T20:02:58,136 renderable = cast_method() 2022-08-22T20:02:58,136 File "/tmp/pip-standalone-pip-1bvpf50q/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-08-22T20:02:58,136 pip_cmd = get_best_invocation_for_this_pip() 2022-08-22T20:02:58,137 File "/tmp/pip-standalone-pip-1bvpf50q/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip 2022-08-22T20:02:58,137 if found_executable and os.path.samefile( 2022-08-22T20:02:58,137 File "/usr/lib/python3.9/genericpath.py", line 101, in samefile 2022-08-22T20:02:58,138 s2 = os.stat(f2) 2022-08-22T20:02:58,138 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9' 2022-08-22T20:02:58,138 Call stack: 2022-08-22T20:02:58,142 File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main 2022-08-22T20:02:58,143 return _run_code(code, main_globals, None, 2022-08-22T20:02:58,143 File "/usr/lib/python3.9/runpy.py", line 87, in _run_code 2022-08-22T20:02:58,143 exec(code, run_globals) 2022-08-22T20:02:58,144 File "/tmp/pip-standalone-pip-1bvpf50q/__env_pip__.zip/pip/__main__.py", line 31, in 2022-08-22T20:02:58,144 sys.exit(_main()) 2022-08-22T20:02:58,144 File "/tmp/pip-standalone-pip-1bvpf50q/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-08-22T20:02:58,145 return command.main(cmd_args) 2022-08-22T20:02:58,145 File "/tmp/pip-standalone-pip-1bvpf50q/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-08-22T20:02:58,145 return self._main(args) 2022-08-22T20:02:58,145 File "/tmp/pip-standalone-pip-1bvpf50q/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-08-22T20:02:58,146 self.handle_pip_version_check(options) 2022-08-22T20:02:58,146 File "/tmp/pip-standalone-pip-1bvpf50q/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-08-22T20:02:58,146 pip_self_version_check(session, options) 2022-08-22T20:02:58,147 File "/tmp/pip-standalone-pip-1bvpf50q/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-08-22T20:02:58,147 logger.info("[present-rich] %s", upgrade_prompt) 2022-08-22T20:02:58,147 File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info 2022-08-22T20:02:58,148 self._log(INFO, msg, args, **kwargs) 2022-08-22T20:02:58,148 File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log 2022-08-22T20:02:58,148 self.handle(record) 2022-08-22T20:02:58,149 File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle 2022-08-22T20:02:58,149 self.callHandlers(record) 2022-08-22T20:02:58,149 File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers 2022-08-22T20:02:58,149 hdlr.handle(record) 2022-08-22T20:02:58,150 File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle 2022-08-22T20:02:58,150 self.emit(record) 2022-08-22T20:02:58,150 File "/tmp/pip-standalone-pip-1bvpf50q/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-08-22T20:02:58,151 self.handleError(record) 2022-08-22T20:02:58,151 Message: '[present-rich] %s' 2022-08-22T20:02:58,151 Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),) 2022-08-22T20:02:58,692 Installing build dependencies: finished with status 'done' 2022-08-22T20:02:58,719 Getting requirements to build wheel: started 2022-08-22T20:02:58,721 Running command Getting requirements to build wheel 2022-08-22T20:03:04,753 /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:102: _ExperimentalProjectMetadata: Support for project metadata in `pyproject.toml` is still experimental and may be removed (or change) in future releases. 2022-08-22T20:03:04,754 warnings.warn(msg, _ExperimentalProjectMetadata) 2022-08-22T20:03:05,066 /usr/local/lib/python3.9/dist-packages/setuptools/config/_apply_pyprojecttoml.py:101: _WouldIgnoreField: !! 2022-08-22T20:03:05,067 ########################################################################## 2022-08-22T20:03:05,068 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-08-22T20:03:05,068 ########################################################################## 2022-08-22T20:03:05,069 The following seems to be defined outside of `pyproject.toml`: 2022-08-22T20:03:05,070 `dependencies = ['setuptools>=41.2.0', 'tensorflow>=2.7.0,<2.9.0', 'numpy>=1.20,<1.23', 'scipy>=1.6.3', 'scikit_learn>=1.0.1', 'scikit_image>=0.19.1', 'matplotlib>=3.4.1', 'plotly>=5.6.0', 'pandas>=1.3.1', 'cvxopt~=1.2.7', 'gurobipy>=9.5.0', 'h5py>=3.6.0', 'imageio>=2.13.0', 'mahotas>=1.4.5,<1.4.13', 'napari>=0.4.12', 'PyYAML>=6.0', 'SimpleITK>=2.1.1', 'tifffile>=2021.11.2', 'btrack>=0.4.2', 'colorcet~=3.0.0', 'seaborn~=0.11.2']` 2022-08-22T20:03:05,070 According to the spec (see the link bellow), however, setuptools CANNOT 2022-08-22T20:03:05,070 consider this value unless 'dependencies' is listed as `dynamic`. 2022-08-22T20:03:05,071 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-08-22T20:03:05,072 For the time being, `setuptools` will still consider the given value (as a 2022-08-22T20:03:05,072 **transitional** measure), but please note that future releases of setuptools will 2022-08-22T20:03:05,072 follow strictly the standard. 2022-08-22T20:03:05,073 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-08-22T20:03:05,073 remove the `[project]` table from your file and rely entirely on other means of 2022-08-22T20:03:05,074 configuration. 2022-08-22T20:03:05,074 !! 2022-08-22T20:03:05,075 warnings.warn(msg, _WouldIgnoreField) 2022-08-22T20:03:06,730 running egg_info 2022-08-22T20:03:07,312 writing celltk2.egg-info/PKG-INFO 2022-08-22T20:03:07,933 writing dependency_links to celltk2.egg-info/dependency_links.txt 2022-08-22T20:03:10,705 writing requirements to celltk2.egg-info/requires.txt 2022-08-22T20:03:11,267 writing top-level names to celltk2.egg-info/top_level.txt 2022-08-22T20:03:11,902 package init file 'celltk/core/__init__.py' not found (or not a regular file) 2022-08-22T20:03:11,941 reading manifest file 'celltk2.egg-info/SOURCES.txt' 2022-08-22T20:03:11,948 adding license file 'LICENSE' 2022-08-22T20:03:11,957 writing manifest file 'celltk2.egg-info/SOURCES.txt' 2022-08-22T20:03:12,260 Getting requirements to build wheel: finished with status 'done' 2022-08-22T20:03:12,286 Created temporary directory: /tmp/pip-standalone-pip-tvhwxvpa 2022-08-22T20:03:14,498 Installing backend dependencies: started 2022-08-22T20:03:14,500 Running command pip subprocess to install backend dependencies 2022-08-22T20:03:25,860 Using pip 22.1.2 from /tmp/pip-standalone-pip-tvhwxvpa/__env_pip__.zip/pip (python 3.9) 2022-08-22T20:03:27,899 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-22T20:03:28,837 Collecting wheel 2022-08-22T20:03:28,875 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-08-22T20:03:38,995 Installing collected packages: wheel 2022-08-22T20:03:39,287 Creating /tmp/pip-build-env-qkspf8lh/normal/bin 2022-08-22T20:03:39,291 changing mode of /tmp/pip-build-env-qkspf8lh/normal/bin/wheel to 755 2022-08-22T20:03:39,317 Successfully installed wheel-0.37.1 2022-08-22T20:03:39,529 --- Logging error --- 2022-08-22T20:03:39,545 Traceback (most recent call last): 2022-08-22T20:03:39,545 File "/tmp/pip-standalone-pip-tvhwxvpa/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-08-22T20:03:39,546 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-08-22T20:03:39,546 File "/tmp/pip-standalone-pip-tvhwxvpa/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-08-22T20:03:39,546 extend(render(renderable, render_options)) 2022-08-22T20:03:39,547 File "/tmp/pip-standalone-pip-tvhwxvpa/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-08-22T20:03:39,547 for render_output in iter_render: 2022-08-22T20:03:39,547 File "/tmp/pip-standalone-pip-tvhwxvpa/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-08-22T20:03:39,548 for line in lines: 2022-08-22T20:03:39,548 File "/tmp/pip-standalone-pip-tvhwxvpa/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-08-22T20:03:39,548 for segment in segments: 2022-08-22T20:03:39,549 File "/tmp/pip-standalone-pip-tvhwxvpa/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-08-22T20:03:39,549 renderable = rich_cast(renderable) 2022-08-22T20:03:39,549 File "/tmp/pip-standalone-pip-tvhwxvpa/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-08-22T20:03:39,550 renderable = cast_method() 2022-08-22T20:03:39,550 File "/tmp/pip-standalone-pip-tvhwxvpa/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-08-22T20:03:39,550 pip_cmd = get_best_invocation_for_this_pip() 2022-08-22T20:03:39,551 File "/tmp/pip-standalone-pip-tvhwxvpa/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip 2022-08-22T20:03:39,551 if found_executable and os.path.samefile( 2022-08-22T20:03:39,551 File "/usr/lib/python3.9/genericpath.py", line 101, in samefile 2022-08-22T20:03:39,551 s2 = os.stat(f2) 2022-08-22T20:03:39,552 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9' 2022-08-22T20:03:39,552 Call stack: 2022-08-22T20:03:39,556 File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main 2022-08-22T20:03:39,557 return _run_code(code, main_globals, None, 2022-08-22T20:03:39,557 File "/usr/lib/python3.9/runpy.py", line 87, in _run_code 2022-08-22T20:03:39,557 exec(code, run_globals) 2022-08-22T20:03:39,558 File "/tmp/pip-standalone-pip-tvhwxvpa/__env_pip__.zip/pip/__main__.py", line 31, in 2022-08-22T20:03:39,558 sys.exit(_main()) 2022-08-22T20:03:39,558 File "/tmp/pip-standalone-pip-tvhwxvpa/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-08-22T20:03:39,559 return command.main(cmd_args) 2022-08-22T20:03:39,559 File "/tmp/pip-standalone-pip-tvhwxvpa/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-08-22T20:03:39,559 return self._main(args) 2022-08-22T20:03:39,562 File "/tmp/pip-standalone-pip-tvhwxvpa/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-08-22T20:03:39,563 self.handle_pip_version_check(options) 2022-08-22T20:03:39,563 File "/tmp/pip-standalone-pip-tvhwxvpa/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-08-22T20:03:39,563 pip_self_version_check(session, options) 2022-08-22T20:03:39,564 File "/tmp/pip-standalone-pip-tvhwxvpa/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-08-22T20:03:39,564 logger.info("[present-rich] %s", upgrade_prompt) 2022-08-22T20:03:39,564 File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info 2022-08-22T20:03:39,565 self._log(INFO, msg, args, **kwargs) 2022-08-22T20:03:39,565 File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log 2022-08-22T20:03:39,565 self.handle(record) 2022-08-22T20:03:39,566 File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle 2022-08-22T20:03:39,566 self.callHandlers(record) 2022-08-22T20:03:39,566 File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers 2022-08-22T20:03:39,566 hdlr.handle(record) 2022-08-22T20:03:39,567 File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle 2022-08-22T20:03:39,567 self.emit(record) 2022-08-22T20:03:39,567 File "/tmp/pip-standalone-pip-tvhwxvpa/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-08-22T20:03:39,568 self.handleError(record) 2022-08-22T20:03:39,568 Message: '[present-rich] %s' 2022-08-22T20:03:39,568 Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),) 2022-08-22T20:03:40,046 Installing backend dependencies: finished with status 'done' 2022-08-22T20:03:40,068 Created temporary directory: /tmp/pip-modern-metadata-la1xz5fl 2022-08-22T20:03:40,074 Preparing metadata (pyproject.toml): started 2022-08-22T20:03:40,076 Running command Preparing metadata (pyproject.toml) 2022-08-22T20:03:46,048 /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:102: _ExperimentalProjectMetadata: Support for project metadata in `pyproject.toml` is still experimental and may be removed (or change) in future releases. 2022-08-22T20:03:46,050 warnings.warn(msg, _ExperimentalProjectMetadata) 2022-08-22T20:03:46,371 /usr/local/lib/python3.9/dist-packages/setuptools/config/_apply_pyprojecttoml.py:101: _WouldIgnoreField: !! 2022-08-22T20:03:46,372 ########################################################################## 2022-08-22T20:03:46,373 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-08-22T20:03:46,373 ########################################################################## 2022-08-22T20:03:46,374 The following seems to be defined outside of `pyproject.toml`: 2022-08-22T20:03:46,374 `dependencies = ['setuptools>=41.2.0', 'tensorflow>=2.7.0,<2.9.0', 'numpy>=1.20,<1.23', 'scipy>=1.6.3', 'scikit_learn>=1.0.1', 'scikit_image>=0.19.1', 'matplotlib>=3.4.1', 'plotly>=5.6.0', 'pandas>=1.3.1', 'cvxopt~=1.2.7', 'gurobipy>=9.5.0', 'h5py>=3.6.0', 'imageio>=2.13.0', 'mahotas>=1.4.5,<1.4.13', 'napari>=0.4.12', 'PyYAML>=6.0', 'SimpleITK>=2.1.1', 'tifffile>=2021.11.2', 'btrack>=0.4.2', 'colorcet~=3.0.0', 'seaborn~=0.11.2']` 2022-08-22T20:03:46,375 According to the spec (see the link bellow), however, setuptools CANNOT 2022-08-22T20:03:46,375 consider this value unless 'dependencies' is listed as `dynamic`. 2022-08-22T20:03:46,376 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-08-22T20:03:46,376 For the time being, `setuptools` will still consider the given value (as a 2022-08-22T20:03:46,377 **transitional** measure), but please note that future releases of setuptools will 2022-08-22T20:03:46,377 follow strictly the standard. 2022-08-22T20:03:46,378 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-08-22T20:03:46,378 remove the `[project]` table from your file and rely entirely on other means of 2022-08-22T20:03:46,379 configuration. 2022-08-22T20:03:46,380 !! 2022-08-22T20:03:46,380 warnings.warn(msg, _WouldIgnoreField) 2022-08-22T20:03:48,040 running dist_info 2022-08-22T20:03:48,638 creating /tmp/pip-modern-metadata-la1xz5fl/celltk2.egg-info 2022-08-22T20:03:49,283 writing /tmp/pip-modern-metadata-la1xz5fl/celltk2.egg-info/PKG-INFO 2022-08-22T20:03:49,846 writing dependency_links to /tmp/pip-modern-metadata-la1xz5fl/celltk2.egg-info/dependency_links.txt 2022-08-22T20:03:52,651 writing requirements to /tmp/pip-modern-metadata-la1xz5fl/celltk2.egg-info/requires.txt 2022-08-22T20:03:53,213 writing top-level names to /tmp/pip-modern-metadata-la1xz5fl/celltk2.egg-info/top_level.txt 2022-08-22T20:03:53,215 writing manifest file '/tmp/pip-modern-metadata-la1xz5fl/celltk2.egg-info/SOURCES.txt' 2022-08-22T20:03:53,850 package init file 'celltk/core/__init__.py' not found (or not a regular file) 2022-08-22T20:03:53,900 reading manifest file '/tmp/pip-modern-metadata-la1xz5fl/celltk2.egg-info/SOURCES.txt' 2022-08-22T20:03:53,904 adding license file 'LICENSE' 2022-08-22T20:03:53,912 writing manifest file '/tmp/pip-modern-metadata-la1xz5fl/celltk2.egg-info/SOURCES.txt' 2022-08-22T20:03:53,914 creating '/tmp/pip-modern-metadata-la1xz5fl/celltk2-0.4.2.dist-info' 2022-08-22T20:03:54,105 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-08-22T20:03:54,424 Preparing metadata (pyproject.toml): finished with status 'done' 2022-08-22T20:03:54,439 Source in /tmp/pip-wheel-sqb7ir9c/celltk2_2a8ebd5435e64a188280b5bd490b6f00 has version 0.4.2, which satisfies requirement celltk2==0.4.2 from https://files.pythonhosted.org/packages/e9/f9/04707142add1a66b233fa06478e81e649d8fac5dc0a01cb9ab8f0df8ba98/celltk2-0.4.2.tar.gz#sha256=440e29eb94cff30aa946c95b2d8deccdfdb880926754880cfb66cecb94597581 2022-08-22T20:03:54,441 Removed celltk2==0.4.2 from https://files.pythonhosted.org/packages/e9/f9/04707142add1a66b233fa06478e81e649d8fac5dc0a01cb9ab8f0df8ba98/celltk2-0.4.2.tar.gz#sha256=440e29eb94cff30aa946c95b2d8deccdfdb880926754880cfb66cecb94597581 from build tracker '/tmp/pip-build-tracker-xrtgbi8j' 2022-08-22T20:03:54,454 Created temporary directory: /tmp/pip-unpack-10i7avdy 2022-08-22T20:03:54,456 Building wheels for collected packages: celltk2 2022-08-22T20:03:54,465 Created temporary directory: /tmp/pip-wheel-_zheup6s 2022-08-22T20:03:54,466 Destination directory: /tmp/pip-wheel-_zheup6s 2022-08-22T20:03:54,471 Building wheel for celltk2 (pyproject.toml): started 2022-08-22T20:03:54,473 Running command Building wheel for celltk2 (pyproject.toml) 2022-08-22T20:04:00,414 /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:102: _ExperimentalProjectMetadata: Support for project metadata in `pyproject.toml` is still experimental and may be removed (or change) in future releases. 2022-08-22T20:04:00,416 warnings.warn(msg, _ExperimentalProjectMetadata) 2022-08-22T20:04:00,726 /usr/local/lib/python3.9/dist-packages/setuptools/config/_apply_pyprojecttoml.py:101: _WouldIgnoreField: !! 2022-08-22T20:04:00,727 ########################################################################## 2022-08-22T20:04:00,727 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-08-22T20:04:00,728 ########################################################################## 2022-08-22T20:04:00,728 The following seems to be defined outside of `pyproject.toml`: 2022-08-22T20:04:00,729 `dependencies = ['setuptools>=41.2.0', 'tensorflow>=2.7.0,<2.9.0', 'numpy>=1.20,<1.23', 'scipy>=1.6.3', 'scikit_learn>=1.0.1', 'scikit_image>=0.19.1', 'matplotlib>=3.4.1', 'plotly>=5.6.0', 'pandas>=1.3.1', 'cvxopt~=1.2.7', 'gurobipy>=9.5.0', 'h5py>=3.6.0', 'imageio>=2.13.0', 'mahotas>=1.4.5,<1.4.13', 'napari>=0.4.12', 'PyYAML>=6.0', 'SimpleITK>=2.1.1', 'tifffile>=2021.11.2', 'btrack>=0.4.2', 'colorcet~=3.0.0', 'seaborn~=0.11.2']` 2022-08-22T20:04:00,730 According to the spec (see the link bellow), however, setuptools CANNOT 2022-08-22T20:04:00,730 consider this value unless 'dependencies' is listed as `dynamic`. 2022-08-22T20:04:00,731 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-08-22T20:04:00,731 For the time being, `setuptools` will still consider the given value (as a 2022-08-22T20:04:00,732 **transitional** measure), but please note that future releases of setuptools will 2022-08-22T20:04:00,732 follow strictly the standard. 2022-08-22T20:04:00,733 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-08-22T20:04:00,733 remove the `[project]` table from your file and rely entirely on other means of 2022-08-22T20:04:00,733 configuration. 2022-08-22T20:04:00,734 !! 2022-08-22T20:04:00,735 warnings.warn(msg, _WouldIgnoreField) 2022-08-22T20:04:01,875 running bdist_wheel 2022-08-22T20:04:02,551 running build 2022-08-22T20:04:02,552 running build_py 2022-08-22T20:04:03,139 creating build 2022-08-22T20:04:03,140 creating build/lib 2022-08-22T20:04:03,141 creating build/lib/celltk 2022-08-22T20:04:03,143 copying celltk/track.py -> build/lib/celltk 2022-08-22T20:04:03,149 copying celltk/extract.py -> build/lib/celltk 2022-08-22T20:04:03,153 copying celltk/segment.py -> build/lib/celltk 2022-08-22T20:04:03,159 copying celltk/evaluate.py -> build/lib/celltk 2022-08-22T20:04:03,162 copying celltk/__init__.py -> build/lib/celltk 2022-08-22T20:04:03,165 copying celltk/process.py -> build/lib/celltk 2022-08-22T20:04:03,172 creating build/lib/celltk/external 2022-08-22T20:04:03,173 creating build/lib/celltk/external/misic 2022-08-22T20:04:03,175 copying celltk/external/misic/__init__.py -> build/lib/celltk/external/misic 2022-08-22T20:04:03,178 copying celltk/external/misic/misic.py -> build/lib/celltk/external/misic 2022-08-22T20:04:03,181 copying celltk/external/misic/extras.py -> build/lib/celltk/external/misic 2022-08-22T20:04:03,184 copying celltk/external/misic/utils.py -> build/lib/celltk/external/misic 2022-08-22T20:04:03,191 creating build/lib/celltk/external/kit_sch_ge 2022-08-22T20:04:03,191 creating build/lib/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:03,193 copying celltk/external/kit_sch_ge/tracker/export.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:03,197 copying celltk/external/kit_sch_ge/tracker/graph.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:03,204 copying celltk/external/kit_sch_ge/tracker/tracking.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:03,210 copying celltk/external/kit_sch_ge/tracker/__init__.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:03,212 copying celltk/external/kit_sch_ge/tracker/postprocessing.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:03,218 copying celltk/external/kit_sch_ge/tracker/extract_data.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:03,221 copying celltk/external/kit_sch_ge/tracker/flow.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:03,224 copying celltk/external/kit_sch_ge/tracker/split_objects.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:03,228 copying celltk/external/kit_sch_ge/tracker/utils.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:03,233 copying celltk/external/kit_sch_ge/run_tracking.py -> build/lib/celltk/external/kit_sch_ge 2022-08-22T20:04:03,236 copying celltk/external/kit_sch_ge/config.py -> build/lib/celltk/external/kit_sch_ge 2022-08-22T20:04:03,239 copying celltk/external/kit_sch_ge/create_synth_segm_data.py -> build/lib/celltk/external/kit_sch_ge 2022-08-22T20:04:03,244 copying celltk/external/kit_sch_ge/__init__.py -> build/lib/celltk/external/kit_sch_ge 2022-08-22T20:04:03,247 copying celltk/external/kit_sch_ge/setup.py -> build/lib/celltk/external/kit_sch_ge 2022-08-22T20:04:03,253 creating build/lib/celltk/utils 2022-08-22T20:04:03,254 copying celltk/utils/operation_utils.py -> build/lib/celltk/utils 2022-08-22T20:04:03,260 copying celltk/utils/process_utils.py -> build/lib/celltk/utils 2022-08-22T20:04:03,263 copying celltk/utils/_types.py -> build/lib/celltk/utils 2022-08-22T20:04:03,267 copying celltk/utils/filter_utils.py -> build/lib/celltk/utils 2022-08-22T20:04:03,270 copying celltk/utils/peak_utils.py -> build/lib/celltk/utils 2022-08-22T20:04:03,275 copying celltk/utils/bayes_utils.py -> build/lib/celltk/utils 2022-08-22T20:04:03,278 copying celltk/utils/plot_utils.py -> build/lib/celltk/utils 2022-08-22T20:04:03,287 copying celltk/utils/kit_sch_ge_utils.py -> build/lib/celltk/utils 2022-08-22T20:04:03,291 copying celltk/utils/slurm_utils.py -> build/lib/celltk/utils 2022-08-22T20:04:03,296 copying celltk/utils/estimator_utils.py -> build/lib/celltk/utils 2022-08-22T20:04:03,300 copying celltk/utils/__init__.py -> build/lib/celltk/utils 2022-08-22T20:04:03,302 copying celltk/utils/_fastkde.py -> build/lib/celltk/utils 2022-08-22T20:04:03,306 copying celltk/utils/cli_utils.py -> build/lib/celltk/utils 2022-08-22T20:04:03,310 copying celltk/utils/unet_model.py -> build/lib/celltk/utils 2022-08-22T20:04:03,314 copying celltk/utils/log_utils.py -> build/lib/celltk/utils 2022-08-22T20:04:03,318 copying celltk/utils/metric_utils.py -> build/lib/celltk/utils 2022-08-22T20:04:03,321 copying celltk/utils/file_utils.py -> build/lib/celltk/utils 2022-08-22T20:04:03,324 copying celltk/utils/utils.py -> build/lib/celltk/utils 2022-08-22T20:04:03,328 package init file 'celltk/core/__init__.py' not found (or not a regular file) 2022-08-22T20:04:03,330 creating build/lib/celltk/core 2022-08-22T20:04:03,332 copying celltk/core/operation.py -> build/lib/celltk/core 2022-08-22T20:04:03,338 copying celltk/core/pipeline.py -> build/lib/celltk/core 2022-08-22T20:04:03,344 copying celltk/core/orchestrator.py -> build/lib/celltk/core 2022-08-22T20:04:03,349 copying celltk/core/arrays.py -> build/lib/celltk/core 2022-08-22T20:04:03,355 running egg_info 2022-08-22T20:04:04,578 writing celltk2.egg-info/PKG-INFO 2022-08-22T20:04:05,132 writing dependency_links to celltk2.egg-info/dependency_links.txt 2022-08-22T20:04:07,895 writing requirements to celltk2.egg-info/requires.txt 2022-08-22T20:04:08,447 writing top-level names to celltk2.egg-info/top_level.txt 2022-08-22T20:04:08,500 reading manifest file 'celltk2.egg-info/SOURCES.txt' 2022-08-22T20:04:08,505 adding license file 'LICENSE' 2022-08-22T20:04:08,515 writing manifest file 'celltk2.egg-info/SOURCES.txt' 2022-08-22T20:04:08,521 copying celltk/external/misic/MiSiCv2.h5 -> build/lib/celltk/external/misic 2022-08-22T20:04:10,077 installing to build/bdist.linux-armv7l/wheel 2022-08-22T20:04:10,077 running install 2022-08-22T20:04:10,138 running install_lib 2022-08-22T20:04:10,729 creating build/bdist.linux-armv7l 2022-08-22T20:04:10,730 creating build/bdist.linux-armv7l/wheel 2022-08-22T20:04:10,734 creating build/bdist.linux-armv7l/wheel/celltk 2022-08-22T20:04:10,736 copying build/lib/celltk/track.py -> build/bdist.linux-armv7l/wheel/celltk 2022-08-22T20:04:10,744 creating build/bdist.linux-armv7l/wheel/celltk/external 2022-08-22T20:04:10,747 creating build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-08-22T20:04:10,750 copying build/lib/celltk/external/kit_sch_ge/run_tracking.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-08-22T20:04:10,754 copying build/lib/celltk/external/kit_sch_ge/config.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-08-22T20:04:10,758 copying build/lib/celltk/external/kit_sch_ge/create_synth_segm_data.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-08-22T20:04:10,763 copying build/lib/celltk/external/kit_sch_ge/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-08-22T20:04:10,768 creating build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:10,769 copying build/lib/celltk/external/kit_sch_ge/tracker/export.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:10,774 copying build/lib/celltk/external/kit_sch_ge/tracker/graph.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:10,780 copying build/lib/celltk/external/kit_sch_ge/tracker/tracking.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:10,785 copying build/lib/celltk/external/kit_sch_ge/tracker/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:10,788 copying build/lib/celltk/external/kit_sch_ge/tracker/postprocessing.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:10,793 copying build/lib/celltk/external/kit_sch_ge/tracker/extract_data.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:10,796 copying build/lib/celltk/external/kit_sch_ge/tracker/flow.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:10,800 copying build/lib/celltk/external/kit_sch_ge/tracker/split_objects.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:10,804 copying build/lib/celltk/external/kit_sch_ge/tracker/utils.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-08-22T20:04:10,807 copying build/lib/celltk/external/kit_sch_ge/setup.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-08-22T20:04:10,811 creating build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-08-22T20:04:10,813 copying build/lib/celltk/external/misic/MiSiCv2.h5 -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-08-22T20:04:11,129 copying build/lib/celltk/external/misic/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-08-22T20:04:11,132 copying build/lib/celltk/external/misic/misic.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-08-22T20:04:11,135 copying build/lib/celltk/external/misic/extras.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-08-22T20:04:11,138 copying build/lib/celltk/external/misic/utils.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-08-22T20:04:11,143 copying build/lib/celltk/extract.py -> build/bdist.linux-armv7l/wheel/celltk 2022-08-22T20:04:11,148 copying build/lib/celltk/segment.py -> build/bdist.linux-armv7l/wheel/celltk 2022-08-22T20:04:11,155 copying build/lib/celltk/evaluate.py -> build/bdist.linux-armv7l/wheel/celltk 2022-08-22T20:04:11,158 copying build/lib/celltk/__init__.py -> build/bdist.linux-armv7l/wheel/celltk 2022-08-22T20:04:11,163 creating build/bdist.linux-armv7l/wheel/celltk/core 2022-08-22T20:04:11,164 copying build/lib/celltk/core/operation.py -> build/bdist.linux-armv7l/wheel/celltk/core 2022-08-22T20:04:11,170 copying build/lib/celltk/core/pipeline.py -> build/bdist.linux-armv7l/wheel/celltk/core 2022-08-22T20:04:11,175 copying build/lib/celltk/core/orchestrator.py -> build/bdist.linux-armv7l/wheel/celltk/core 2022-08-22T20:04:11,181 copying build/lib/celltk/core/arrays.py -> build/bdist.linux-armv7l/wheel/celltk/core 2022-08-22T20:04:11,190 copying build/lib/celltk/process.py -> build/bdist.linux-armv7l/wheel/celltk 2022-08-22T20:04:11,197 creating build/bdist.linux-armv7l/wheel/celltk/utils 2022-08-22T20:04:11,198 copying build/lib/celltk/utils/operation_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-08-22T20:04:11,204 copying build/lib/celltk/utils/process_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-08-22T20:04:11,207 copying build/lib/celltk/utils/_types.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-08-22T20:04:11,211 copying build/lib/celltk/utils/filter_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-08-22T20:04:11,215 copying build/lib/celltk/utils/peak_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-08-22T20:04:11,220 copying build/lib/celltk/utils/bayes_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-08-22T20:04:11,223 copying build/lib/celltk/utils/plot_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-08-22T20:04:11,232 copying build/lib/celltk/utils/kit_sch_ge_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-08-22T20:04:11,236 copying build/lib/celltk/utils/slurm_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-08-22T20:04:11,241 copying build/lib/celltk/utils/estimator_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-08-22T20:04:11,245 copying build/lib/celltk/utils/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-08-22T20:04:11,248 copying build/lib/celltk/utils/_fastkde.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-08-22T20:04:11,252 copying build/lib/celltk/utils/cli_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-08-22T20:04:11,256 copying build/lib/celltk/utils/unet_model.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-08-22T20:04:11,261 copying build/lib/celltk/utils/log_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-08-22T20:04:11,265 copying build/lib/celltk/utils/metric_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-08-22T20:04:11,269 copying build/lib/celltk/utils/file_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-08-22T20:04:11,273 copying build/lib/celltk/utils/utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-08-22T20:04:11,277 running install_egg_info 2022-08-22T20:04:11,868 Copying celltk2.egg-info to build/bdist.linux-armv7l/wheel/celltk2-0.4.2-py3.9.egg-info 2022-08-22T20:04:11,890 running install_scripts 2022-08-22T20:04:11,990 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-08-22T20:04:12,001 creating build/bdist.linux-armv7l/wheel/celltk2-0.4.2.dist-info/WHEEL 2022-08-22T20:04:12,006 creating '/tmp/pip-wheel-_zheup6s/tmp4s1tys75/celltk2-0.4.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-08-22T20:04:12,011 adding 'celltk/__init__.py' 2022-08-22T20:04:12,015 adding 'celltk/evaluate.py' 2022-08-22T20:04:12,021 adding 'celltk/extract.py' 2022-08-22T20:04:12,030 adding 'celltk/process.py' 2022-08-22T20:04:12,043 adding 'celltk/segment.py' 2022-08-22T20:04:12,051 adding 'celltk/track.py' 2022-08-22T20:04:12,071 adding 'celltk/core/arrays.py' 2022-08-22T20:04:12,086 adding 'celltk/core/operation.py' 2022-08-22T20:04:12,094 adding 'celltk/core/orchestrator.py' 2022-08-22T20:04:12,105 adding 'celltk/core/pipeline.py' 2022-08-22T20:04:12,110 adding 'celltk/external/kit_sch_ge/__init__.py' 2022-08-22T20:04:12,113 adding 'celltk/external/kit_sch_ge/config.py' 2022-08-22T20:04:12,121 adding 'celltk/external/kit_sch_ge/create_synth_segm_data.py' 2022-08-22T20:04:12,125 adding 'celltk/external/kit_sch_ge/run_tracking.py' 2022-08-22T20:04:12,128 adding 'celltk/external/kit_sch_ge/setup.py' 2022-08-22T20:04:12,132 adding 'celltk/external/kit_sch_ge/tracker/__init__.py' 2022-08-22T20:04:12,136 adding 'celltk/external/kit_sch_ge/tracker/export.py' 2022-08-22T20:04:12,140 adding 'celltk/external/kit_sch_ge/tracker/extract_data.py' 2022-08-22T20:04:12,143 adding 'celltk/external/kit_sch_ge/tracker/flow.py' 2022-08-22T20:04:12,155 adding 'celltk/external/kit_sch_ge/tracker/graph.py' 2022-08-22T20:04:12,166 adding 'celltk/external/kit_sch_ge/tracker/postprocessing.py' 2022-08-22T20:04:12,172 adding 'celltk/external/kit_sch_ge/tracker/split_objects.py' 2022-08-22T20:04:12,177 adding 'celltk/external/kit_sch_ge/tracker/tracking.py' 2022-08-22T20:04:12,180 adding 'celltk/external/kit_sch_ge/tracker/utils.py' 2022-08-22T20:04:14,910 adding 'celltk/external/misic/MiSiCv2.h5' 2022-08-22T20:04:15,061 adding 'celltk/external/misic/__init__.py' 2022-08-22T20:04:15,065 adding 'celltk/external/misic/extras.py' 2022-08-22T20:04:15,068 adding 'celltk/external/misic/misic.py' 2022-08-22T20:04:15,072 adding 'celltk/external/misic/utils.py' 2022-08-22T20:04:15,075 adding 'celltk/utils/__init__.py' 2022-08-22T20:04:15,078 adding 'celltk/utils/_fastkde.py' 2022-08-22T20:04:15,081 adding 'celltk/utils/_types.py' 2022-08-22T20:04:15,083 adding 'celltk/utils/bayes_utils.py' 2022-08-22T20:04:15,086 adding 'celltk/utils/cli_utils.py' 2022-08-22T20:04:15,089 adding 'celltk/utils/estimator_utils.py' 2022-08-22T20:04:15,092 adding 'celltk/utils/file_utils.py' 2022-08-22T20:04:15,095 adding 'celltk/utils/filter_utils.py' 2022-08-22T20:04:15,098 adding 'celltk/utils/kit_sch_ge_utils.py' 2022-08-22T20:04:15,101 adding 'celltk/utils/log_utils.py' 2022-08-22T20:04:15,103 adding 'celltk/utils/metric_utils.py' 2022-08-22T20:04:15,114 adding 'celltk/utils/operation_utils.py' 2022-08-22T20:04:15,120 adding 'celltk/utils/peak_utils.py' 2022-08-22T20:04:15,140 adding 'celltk/utils/plot_utils.py' 2022-08-22T20:04:15,145 adding 'celltk/utils/process_utils.py' 2022-08-22T20:04:15,153 adding 'celltk/utils/slurm_utils.py' 2022-08-22T20:04:15,161 adding 'celltk/utils/unet_model.py' 2022-08-22T20:04:15,166 adding 'celltk/utils/utils.py' 2022-08-22T20:04:15,171 adding 'celltk2-0.4.2.dist-info/LICENSE' 2022-08-22T20:04:15,173 adding 'celltk2-0.4.2.dist-info/METADATA' 2022-08-22T20:04:15,175 adding 'celltk2-0.4.2.dist-info/WHEEL' 2022-08-22T20:04:15,177 adding 'celltk2-0.4.2.dist-info/top_level.txt' 2022-08-22T20:04:15,179 adding 'celltk2-0.4.2.dist-info/RECORD' 2022-08-22T20:04:15,518 removing build/bdist.linux-armv7l/wheel 2022-08-22T20:04:15,922 Building wheel for celltk2 (pyproject.toml): finished with status 'done' 2022-08-22T20:04:16,284 Created wheel for celltk2: filename=celltk2-0.4.2-py3-none-any.whl size=6966226 sha256=c173997bd830fa0a97b9e2d2a20c3bc1f072e02a770565b72939c8926a307d8c 2022-08-22T20:04:16,286 Stored in directory: /tmp/pip-ephem-wheel-cache-r11s3n4v/wheels/49/8b/e4/aeb4caa1898b0e226ff6586627f1ba10f9096e4b24a745d4dc 2022-08-22T20:04:16,320 Successfully built celltk2 2022-08-22T20:04:16,803 Removed build tracker: '/tmp/pip-build-tracker-xrtgbi8j'