2022-08-22T23:16:09,493 Created temporary directory: /tmp/pip-ephem-wheel-cache-d7bfrf5v 2022-08-22T23:16:09,499 Created temporary directory: /tmp/pip-build-tracker-s69850cz 2022-08-22T23:16:09,499 Initialized build tracking at /tmp/pip-build-tracker-s69850cz 2022-08-22T23:16:09,500 Created build tracker: /tmp/pip-build-tracker-s69850cz 2022-08-22T23:16:09,501 Entered build tracker: /tmp/pip-build-tracker-s69850cz 2022-08-22T23:16:09,502 Created temporary directory: /tmp/pip-wheel-ffsh4ze1 2022-08-22T23:16:09,579 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-22T23:16:09,589 2 location(s) to search for versions of genomad: 2022-08-22T23:16:09,589 * https://pypi.org/simple/genomad/ 2022-08-22T23:16:09,589 * https://www.piwheels.org/simple/genomad/ 2022-08-22T23:16:09,590 Fetching project page and analyzing links: https://pypi.org/simple/genomad/ 2022-08-22T23:16:09,592 Getting page https://pypi.org/simple/genomad/ 2022-08-22T23:16:09,596 Found index url https://pypi.org/simple 2022-08-22T23:16:09,713 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/54/1b/cbb97dbbdbabc76d9135d3e8b0e9458499e429625e3362c2b8ac17ba74ed/genomad-1.0.0-py3-none-any.whl#sha256=51cc8d52121f138021e5d4de5ed0308aa390c18a2b9e5a1808e4b70a4739711d (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2022-08-22T23:16:09,715 Found link https://files.pythonhosted.org/packages/f7/e4/7939674f62a558422c443484e0b1db9eb54e54d458be0ccd9b37e36da587/genomad-1.0.0.tar.gz#sha256=dd86bedc6fcb702a841bf4f1995b5a34723fd0bd7798dff611f178407fcd25c6 (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.0.0 2022-08-22T23:16:09,716 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/5c/d7/0ad5dd718d60403a066f29db3e1492d935e8bce4b6c01c2f9d2be3961749/genomad-1.1.0-py3-none-any.whl#sha256=93407df921d9b9ab231ca6cfded8d556d4a6e6a4ea64f0431fb14bdce2c5f9a9 (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2022-08-22T23:16:09,717 Found link https://files.pythonhosted.org/packages/28/0c/fea3dcf100673638845672c5afbb8f67771672edaf41384e84fc4ba4caaa/genomad-1.1.0.tar.gz#sha256=776e5ecbe610a82833c33e9968411e3fc736fc38bf1c007e316de886254e6b6b (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.1.0 2022-08-22T23:16:09,718 Fetching project page and analyzing links: https://www.piwheels.org/simple/genomad/ 2022-08-22T23:16:09,719 Getting page https://www.piwheels.org/simple/genomad/ 2022-08-22T23:16:09,721 Found index url https://www.piwheels.org/simple 2022-08-22T23:16:09,928 Skipping link: No binaries permitted for genomad: https://www.piwheels.org/simple/genomad/genomad-1.0.0-py3-none-any.whl#sha256=be25fbe13f848d8ce8cedb9529fbf2856146251f933ac010b1649d0a56737116 (from https://www.piwheels.org/simple/genomad/) (requires-python:>=3.8) 2022-08-22T23:16:09,929 Skipping link: not a file: https://www.piwheels.org/simple/genomad/ 2022-08-22T23:16:09,930 Skipping link: not a file: https://pypi.org/simple/genomad/ 2022-08-22T23:16:09,974 Given no hashes to check 1 links for project 'genomad': discarding no candidates 2022-08-22T23:16:10,016 Collecting genomad==1.1.0 2022-08-22T23:16:10,021 Created temporary directory: /tmp/pip-unpack-bq2q_6e_ 2022-08-22T23:16:11,952 Downloading genomad-1.1.0.tar.gz (26.6 MB) 2022-08-22T23:16:21,446 Added genomad==1.1.0 from https://files.pythonhosted.org/packages/28/0c/fea3dcf100673638845672c5afbb8f67771672edaf41384e84fc4ba4caaa/genomad-1.1.0.tar.gz#sha256=776e5ecbe610a82833c33e9968411e3fc736fc38bf1c007e316de886254e6b6b to build tracker '/tmp/pip-build-tracker-s69850cz' 2022-08-22T23:16:21,456 Created temporary directory: /tmp/pip-build-env-k49ox2ni 2022-08-22T23:16:21,477 Created temporary directory: /tmp/pip-standalone-pip-hgkndfbx 2022-08-22T23:16:24,090 Installing build dependencies: started 2022-08-22T23:16:24,092 Running command pip subprocess to install build dependencies 2022-08-22T23:16:35,463 Using pip 22.1.2 from /tmp/pip-standalone-pip-hgkndfbx/__env_pip__.zip/pip (python 3.9) 2022-08-22T23:16:37,166 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-22T23:16:37,853 Collecting flit_core<4,>=3.2 2022-08-22T23:16:37,891 Using cached https://www.piwheels.org/simple/flit-core/flit_core-3.7.1-py3-none-any.whl (60 kB) 2022-08-22T23:16:44,767 Installing collected packages: flit_core 2022-08-22T23:16:45,448 Successfully installed flit_core-3.7.1 2022-08-22T23:16:45,653 --- Logging error --- 2022-08-22T23:16:45,669 Traceback (most recent call last): 2022-08-22T23:16:45,670 File "/tmp/pip-standalone-pip-hgkndfbx/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-08-22T23:16:45,670 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-08-22T23:16:45,670 File "/tmp/pip-standalone-pip-hgkndfbx/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-08-22T23:16:45,671 extend(render(renderable, render_options)) 2022-08-22T23:16:45,671 File "/tmp/pip-standalone-pip-hgkndfbx/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-08-22T23:16:45,672 for render_output in iter_render: 2022-08-22T23:16:45,672 File "/tmp/pip-standalone-pip-hgkndfbx/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-08-22T23:16:45,672 for line in lines: 2022-08-22T23:16:45,673 File "/tmp/pip-standalone-pip-hgkndfbx/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-08-22T23:16:45,673 for segment in segments: 2022-08-22T23:16:45,673 File "/tmp/pip-standalone-pip-hgkndfbx/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-08-22T23:16:45,673 renderable = rich_cast(renderable) 2022-08-22T23:16:45,674 File "/tmp/pip-standalone-pip-hgkndfbx/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-08-22T23:16:45,674 renderable = cast_method() 2022-08-22T23:16:45,674 File "/tmp/pip-standalone-pip-hgkndfbx/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-08-22T23:16:45,675 pip_cmd = get_best_invocation_for_this_pip() 2022-08-22T23:16:45,675 File "/tmp/pip-standalone-pip-hgkndfbx/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip 2022-08-22T23:16:45,676 if found_executable and os.path.samefile( 2022-08-22T23:16:45,676 File "/usr/lib/python3.9/genericpath.py", line 101, in samefile 2022-08-22T23:16:45,676 s2 = os.stat(f2) 2022-08-22T23:16:45,677 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9' 2022-08-22T23:16:45,677 Call stack: 2022-08-22T23:16:45,681 File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main 2022-08-22T23:16:45,681 return _run_code(code, main_globals, None, 2022-08-22T23:16:45,682 File "/usr/lib/python3.9/runpy.py", line 87, in _run_code 2022-08-22T23:16:45,682 exec(code, run_globals) 2022-08-22T23:16:45,682 File "/tmp/pip-standalone-pip-hgkndfbx/__env_pip__.zip/pip/__main__.py", line 31, in 2022-08-22T23:16:45,683 sys.exit(_main()) 2022-08-22T23:16:45,683 File "/tmp/pip-standalone-pip-hgkndfbx/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-08-22T23:16:45,683 return command.main(cmd_args) 2022-08-22T23:16:45,683 File "/tmp/pip-standalone-pip-hgkndfbx/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-08-22T23:16:45,684 return self._main(args) 2022-08-22T23:16:45,684 File "/tmp/pip-standalone-pip-hgkndfbx/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-08-22T23:16:45,685 self.handle_pip_version_check(options) 2022-08-22T23:16:45,685 File "/tmp/pip-standalone-pip-hgkndfbx/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-08-22T23:16:45,685 pip_self_version_check(session, options) 2022-08-22T23:16:45,685 File "/tmp/pip-standalone-pip-hgkndfbx/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-08-22T23:16:45,686 logger.info("[present-rich] %s", upgrade_prompt) 2022-08-22T23:16:45,686 File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info 2022-08-22T23:16:45,686 self._log(INFO, msg, args, **kwargs) 2022-08-22T23:16:45,687 File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log 2022-08-22T23:16:45,687 self.handle(record) 2022-08-22T23:16:45,687 File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle 2022-08-22T23:16:45,687 self.callHandlers(record) 2022-08-22T23:16:45,688 File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers 2022-08-22T23:16:45,688 hdlr.handle(record) 2022-08-22T23:16:45,688 File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle 2022-08-22T23:16:45,689 self.emit(record) 2022-08-22T23:16:45,689 File "/tmp/pip-standalone-pip-hgkndfbx/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-08-22T23:16:45,689 self.handleError(record) 2022-08-22T23:16:45,689 Message: '[present-rich] %s' 2022-08-22T23:16:45,690 Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),) 2022-08-22T23:16:46,131 Installing build dependencies: finished with status 'done' 2022-08-22T23:16:46,159 Getting requirements to build wheel: started 2022-08-22T23:16:46,161 Running command Getting requirements to build wheel 2022-08-22T23:16:46,857 Getting requirements to build wheel: finished with status 'done' 2022-08-22T23:16:46,868 Created temporary directory: /tmp/pip-modern-metadata-ert6qe1s 2022-08-22T23:16:46,874 Preparing metadata (pyproject.toml): started 2022-08-22T23:16:46,876 Running command Preparing metadata (pyproject.toml) 2022-08-22T23:16:47,604 Preparing metadata (pyproject.toml): finished with status 'done' 2022-08-22T23:16:47,622 Source in /tmp/pip-wheel-ffsh4ze1/genomad_966605c4903040fb995d9a63447d7391 has version 1.1.0, which satisfies requirement genomad==1.1.0 from https://files.pythonhosted.org/packages/28/0c/fea3dcf100673638845672c5afbb8f67771672edaf41384e84fc4ba4caaa/genomad-1.1.0.tar.gz#sha256=776e5ecbe610a82833c33e9968411e3fc736fc38bf1c007e316de886254e6b6b 2022-08-22T23:16:47,624 Removed genomad==1.1.0 from https://files.pythonhosted.org/packages/28/0c/fea3dcf100673638845672c5afbb8f67771672edaf41384e84fc4ba4caaa/genomad-1.1.0.tar.gz#sha256=776e5ecbe610a82833c33e9968411e3fc736fc38bf1c007e316de886254e6b6b from build tracker '/tmp/pip-build-tracker-s69850cz' 2022-08-22T23:16:47,639 Created temporary directory: /tmp/pip-unpack-nifbtmxb 2022-08-22T23:16:47,640 Building wheels for collected packages: genomad 2022-08-22T23:16:47,650 Created temporary directory: /tmp/pip-wheel-8ajds2r_ 2022-08-22T23:16:47,650 Destination directory: /tmp/pip-wheel-8ajds2r_ 2022-08-22T23:16:47,655 Building wheel for genomad (pyproject.toml): started 2022-08-22T23:16:47,657 Running command Building wheel for genomad (pyproject.toml) 2022-08-22T23:17:16,981 Building wheel for genomad (pyproject.toml): finished with status 'done' 2022-08-22T23:17:19,960 Created wheel for genomad: filename=genomad-1.1.0-py3-none-any.whl size=53214867 sha256=39882ba44cdd06bd9133608e92353ad9b62bea1d03923f9adb60fc8732c1feb5 2022-08-22T23:17:19,962 Stored in directory: /tmp/pip-ephem-wheel-cache-d7bfrf5v/wheels/09/95/22/07fc6517a4f5aef70279786aec9c40bd24d26bef6530963e16 2022-08-22T23:17:20,055 Successfully built genomad 2022-08-22T23:17:23,224 Removed build tracker: '/tmp/pip-build-tracker-s69850cz'