2022-08-24T15:24:44,600 Created temporary directory: /tmp/pip-ephem-wheel-cache-h9u3buiw
2022-08-24T15:24:44,605 Created temporary directory: /tmp/pip-build-tracker-o94oxdxy
2022-08-24T15:24:44,606 Initialized build tracking at /tmp/pip-build-tracker-o94oxdxy
2022-08-24T15:24:44,606 Created build tracker: /tmp/pip-build-tracker-o94oxdxy
2022-08-24T15:24:44,607 Entered build tracker: /tmp/pip-build-tracker-o94oxdxy
2022-08-24T15:24:44,608 Created temporary directory: /tmp/pip-wheel-vs8m16ne
2022-08-24T15:24:44,684 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-08-24T15:24:44,692 2 location(s) to search for versions of coppafish:
2022-08-24T15:24:44,692 * https://pypi.org/simple/coppafish/
2022-08-24T15:24:44,692 * https://www.piwheels.org/simple/coppafish/
2022-08-24T15:24:44,694 Fetching project page and analyzing links: https://pypi.org/simple/coppafish/
2022-08-24T15:24:44,695 Getting page https://pypi.org/simple/coppafish/
2022-08-24T15:24:44,698 Found index url https://pypi.org/simple
2022-08-24T15:24:44,823   Skipping link: No binaries permitted for coppafish: https://files.pythonhosted.org/packages/e9/73/6f328b727245a7251d65164be6ee4a76d7fd1adf87a968d7e21da367e795/coppafish-0.1.0-py3-none-any.whl#sha256=8dd52d97908f16a2f6a225945de7f97f8980b2cd01a9e3fe0adfed1e60568610 (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-24T15:24:44,825   Found link https://files.pythonhosted.org/packages/60/cf/5e979fb9e16482fdee00fcbfd16bcff74b90a1bcd6bbb7b5826e3a8df530/coppafish-0.1.0.tar.gz#sha256=27bdaebaf05e460d7d1fa165c57aeaaf5d6d3d5da4a3f3f440ae52b164f3da41 (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8), version: 0.1.0
2022-08-24T15:24:44,826   Skipping link: No binaries permitted for coppafish: https://files.pythonhosted.org/packages/fe/ba/c1f2893215fff630b6ac72f2c2b40c9c2bd872b68e1d61b3726fb5d311b3/coppafish-0.1.1-py3-none-any.whl#sha256=39ee446e654c947acb978e3b04045a77aeac95e218d670274fd7bc08ba8f5814 (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-24T15:24:44,827   Found link https://files.pythonhosted.org/packages/dc/be/b22d87837f76553d41be6e74dc30c3497709aebbd07d126f82c1a0de4812/coppafish-0.1.1.tar.gz#sha256=91806207a6be51fcde3bebfa715dbb34396eeccabe19f3b915119bd391a8ee10 (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8), version: 0.1.1
2022-08-24T15:24:44,828   Skipping link: No binaries permitted for coppafish: https://files.pythonhosted.org/packages/e1/46/89e58b37d74fee2680b5bc776d0559fa8fdf3caa83ec7f5874c2d80713db/coppafish-0.1.2-py3-none-any.whl#sha256=13265cb18b027ab750efc4fe916b4158140e747155bad07f296338d0df3d8b84 (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-24T15:24:44,829   Found link https://files.pythonhosted.org/packages/54/98/dd615cd49346eebd21228d40f7622c13f9f2d6bc1a9b3fc5099d84224a55/coppafish-0.1.2.tar.gz#sha256=676644625113060b0aa332eb73c1887da2ef71cb853e0c58e3219cf69dfb98cc (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8), version: 0.1.2
2022-08-24T15:24:44,830   Skipping link: No binaries permitted for coppafish: https://files.pythonhosted.org/packages/b0/7c/306b2f6a3f5f8bb17d4466f936423fc9ab67585ab477b056c653b70d4591/coppafish-0.1.3-py3-none-any.whl#sha256=dfff0aa689d6500e372646f36e1681103661ef650a72a3f0a6b9c380a24257bb (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-24T15:24:44,831   Found link https://files.pythonhosted.org/packages/a7/58/b11739cbb358beae6fa5070ce557d85e23906d56153bedfbbd65be0a826d/coppafish-0.1.3.tar.gz#sha256=c5c9da063c019771f6ea28d45e571952b92a8cbbb0f7dfd6f4c588a366f05188 (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8), version: 0.1.3
2022-08-24T15:24:44,832   Skipping link: No binaries permitted for coppafish: https://files.pythonhosted.org/packages/e8/f0/fb14f26d2df2bdf46a402aa0f80a5eed4addba1f0424b595c11e249a655c/coppafish-0.1.4-py3-none-any.whl#sha256=525fb3d8b5305cb48611e60dbd2eaab93edc8f7b7ca44e4fbeac7187ae8bc2db (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-24T15:24:44,833   Found link https://files.pythonhosted.org/packages/23/d7/53bd096212a1a4081bdf5158fc2a20eb650ede774f6d9c940f82461d5e3f/coppafish-0.1.4.tar.gz#sha256=3d66749c3947801439684e59cbac463278ff5c80f51a88f990cd56ec481d221f (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8), version: 0.1.4
2022-08-24T15:24:44,834   Skipping link: No binaries permitted for coppafish: https://files.pythonhosted.org/packages/a3/79/7ca664b2d878df40787aa10988979ea719639b2be069485721e576096301/coppafish-0.1.5-py3-none-any.whl#sha256=57bbedd11a649ce489506b0bfd09e21bf14787adf30f7535f8cfbcc6fb30592e (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-24T15:24:44,835   Found link https://files.pythonhosted.org/packages/d8/57/85cca3b34dbe43c9e39850bc115e1f54a6b4679a95cc4c97d53cf96fa476/coppafish-0.1.5.tar.gz#sha256=276ccb99911a9e34abf2316630fed94f130ca384c1ca464a8d483a1f33fd8d9c (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8), version: 0.1.5
2022-08-24T15:24:44,836   Skipping link: No binaries permitted for coppafish: https://files.pythonhosted.org/packages/49/2c/7c435e45cf61e828a70ace267e31c635d361d52a521f34766a240d46aba0/coppafish-0.1.6-py3-none-any.whl#sha256=8fca1cffa508f6eec654025744c76a6ce2ff07e3d5301256cc8d7a27135c2561 (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-24T15:24:44,837   Found link https://files.pythonhosted.org/packages/88/62/f5c4c3f80de3bcc03797121743ff90966afcdc3c39ab30da672665c420b7/coppafish-0.1.6.tar.gz#sha256=20439a7028705f6b2c1bd66445e4cb70a12f3768c967bbb386a3d90df5226dcb (from https://pypi.org/simple/coppafish/) (requires-python:>=3.8), version: 0.1.6
2022-08-24T15:24:44,838 Fetching project page and analyzing links: https://www.piwheels.org/simple/coppafish/
2022-08-24T15:24:44,839 Getting page https://www.piwheels.org/simple/coppafish/
2022-08-24T15:24:44,841 Found index url https://www.piwheels.org/simple
2022-08-24T15:24:45,060   Skipping link: No binaries permitted for coppafish: https://www.piwheels.org/simple/coppafish/coppafish-0.1.5-py3-none-any.whl#sha256=932503c8a5ecb01a0c1c0aaf9512a1a41e6ab739af244cc489d098b321faf139 (from https://www.piwheels.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-24T15:24:45,060   Skipping link: No binaries permitted for coppafish: https://www.piwheels.org/simple/coppafish/coppafish-0.1.4-py3-none-any.whl#sha256=acd1cdc77a23ab61d39193990c09cc7e1ac2432de22c03e4d034f5e254dd6596 (from https://www.piwheels.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-24T15:24:45,061   Skipping link: No binaries permitted for coppafish: https://www.piwheels.org/simple/coppafish/coppafish-0.1.3-py3-none-any.whl#sha256=b1c0091267eb1e026c2529c9762e9ba81785c39ed742fd0629b19fe7614c911c (from https://www.piwheels.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-24T15:24:45,061   Skipping link: No binaries permitted for coppafish: https://www.piwheels.org/simple/coppafish/coppafish-0.1.2-py3-none-any.whl#sha256=2c1910fe7a84014c01e97dda48072a4bfb3c81ee2ef888514f6e840a4fa72e80 (from https://www.piwheels.org/simple/coppafish/) (requires-python:>=3.8)
2022-08-24T15:24:45,062 Skipping link: not a file: https://www.piwheels.org/simple/coppafish/
2022-08-24T15:24:45,063 Skipping link: not a file: https://pypi.org/simple/coppafish/
2022-08-24T15:24:45,109 Given no hashes to check 1 links for project 'coppafish': discarding no candidates
2022-08-24T15:24:45,151 Collecting coppafish==0.1.6
2022-08-24T15:24:45,155   Created temporary directory: /tmp/pip-unpack-6727uxof
2022-08-24T15:24:45,524   Downloading coppafish-0.1.6.tar.gz (226 kB)
2022-08-24T15:24:46,236   Added coppafish==0.1.6 from https://files.pythonhosted.org/packages/88/62/f5c4c3f80de3bcc03797121743ff90966afcdc3c39ab30da672665c420b7/coppafish-0.1.6.tar.gz#sha256=20439a7028705f6b2c1bd66445e4cb70a12f3768c967bbb386a3d90df5226dcb to build tracker '/tmp/pip-build-tracker-o94oxdxy'
2022-08-24T15:24:46,240   Running setup.py (path:/tmp/pip-wheel-vs8m16ne/coppafish_2105e95937ca4f03acf72ba875c90a46/setup.py) egg_info for package coppafish
2022-08-24T15:24:46,241   Created temporary directory: /tmp/pip-pip-egg-info-zkgl2nqq
2022-08-24T15:24:46,242   Preparing metadata (setup.py): started
2022-08-24T15:24:46,244   Running command python setup.py egg_info
2022-08-24T15:24:53,793   running egg_info
2022-08-24T15:24:53,798   creating /tmp/pip-pip-egg-info-zkgl2nqq/coppafish.egg-info
2022-08-24T15:24:54,460   writing /tmp/pip-pip-egg-info-zkgl2nqq/coppafish.egg-info/PKG-INFO
2022-08-24T15:24:55,028   writing dependency_links to /tmp/pip-pip-egg-info-zkgl2nqq/coppafish.egg-info/dependency_links.txt
2022-08-24T15:24:57,856   writing requirements to /tmp/pip-pip-egg-info-zkgl2nqq/coppafish.egg-info/requires.txt
2022-08-24T15:24:58,424   writing top-level names to /tmp/pip-pip-egg-info-zkgl2nqq/coppafish.egg-info/top_level.txt
2022-08-24T15:24:58,427   writing manifest file '/tmp/pip-pip-egg-info-zkgl2nqq/coppafish.egg-info/SOURCES.txt'
2022-08-24T15:24:59,359   reading manifest file '/tmp/pip-pip-egg-info-zkgl2nqq/coppafish.egg-info/SOURCES.txt'
2022-08-24T15:24:59,362   adding license file 'LICENSE.md'
2022-08-24T15:24:59,376   writing manifest file '/tmp/pip-pip-egg-info-zkgl2nqq/coppafish.egg-info/SOURCES.txt'
2022-08-24T15:24:59,583   Preparing metadata (setup.py): finished with status 'done'
2022-08-24T15:24:59,594   Source in /tmp/pip-wheel-vs8m16ne/coppafish_2105e95937ca4f03acf72ba875c90a46 has version 0.1.6, which satisfies requirement coppafish==0.1.6 from https://files.pythonhosted.org/packages/88/62/f5c4c3f80de3bcc03797121743ff90966afcdc3c39ab30da672665c420b7/coppafish-0.1.6.tar.gz#sha256=20439a7028705f6b2c1bd66445e4cb70a12f3768c967bbb386a3d90df5226dcb
2022-08-24T15:24:59,596   Removed coppafish==0.1.6 from https://files.pythonhosted.org/packages/88/62/f5c4c3f80de3bcc03797121743ff90966afcdc3c39ab30da672665c420b7/coppafish-0.1.6.tar.gz#sha256=20439a7028705f6b2c1bd66445e4cb70a12f3768c967bbb386a3d90df5226dcb from build tracker '/tmp/pip-build-tracker-o94oxdxy'
2022-08-24T15:24:59,609 Created temporary directory: /tmp/pip-unpack-hc6tuy5d
2022-08-24T15:24:59,610 Building wheels for collected packages: coppafish
2022-08-24T15:24:59,620   Created temporary directory: /tmp/pip-wheel-ug62o2l9
2022-08-24T15:24:59,621   Building wheel for coppafish (setup.py): started
2022-08-24T15:24:59,623   Destination directory: /tmp/pip-wheel-ug62o2l9
2022-08-24T15:24:59,623   Running command python setup.py bdist_wheel
2022-08-24T15:25:06,571   running bdist_wheel
2022-08-24T15:25:07,973   running build
2022-08-24T15:25:07,974   running build_py
2022-08-24T15:25:08,628   creating build
2022-08-24T15:25:08,629   creating build/lib
2022-08-24T15:25:08,630   creating build/lib/coppafish
2022-08-24T15:25:08,633   copying coppafish/__main__.py -> build/lib/coppafish
2022-08-24T15:25:08,636   copying coppafish/__init__.py -> build/lib/coppafish
2022-08-24T15:25:08,640   copying coppafish/_version.py -> build/lib/coppafish
2022-08-24T15:25:08,645   creating build/lib/coppafish/pipeline
2022-08-24T15:25:08,647   copying coppafish/pipeline/find_spots.py -> build/lib/coppafish/pipeline
2022-08-24T15:25:08,652   copying coppafish/pipeline/register_initial.py -> build/lib/coppafish/pipeline
2022-08-24T15:25:08,656   copying coppafish/pipeline/call_reference_spots.py -> build/lib/coppafish/pipeline
2022-08-24T15:25:08,662   copying coppafish/pipeline/basic_info.py -> build/lib/coppafish/pipeline
2022-08-24T15:25:08,666   copying coppafish/pipeline/__init__.py -> build/lib/coppafish/pipeline
2022-08-24T15:25:08,669   copying coppafish/pipeline/omp.py -> build/lib/coppafish/pipeline
2022-08-24T15:25:08,675   copying coppafish/pipeline/get_reference_spots.py -> build/lib/coppafish/pipeline
2022-08-24T15:25:08,679   copying coppafish/pipeline/register.py -> build/lib/coppafish/pipeline
2022-08-24T15:25:08,683   copying coppafish/pipeline/stitch.py -> build/lib/coppafish/pipeline
2022-08-24T15:25:08,688   copying coppafish/pipeline/extract_run.py -> build/lib/coppafish/pipeline
2022-08-24T15:25:08,693   copying coppafish/pipeline/run.py -> build/lib/coppafish/pipeline
2022-08-24T15:25:08,699   creating build/lib/coppafish/extract
2022-08-24T15:25:08,701   copying coppafish/extract/base.py -> build/lib/coppafish/extract
2022-08-24T15:25:08,705   copying coppafish/extract/__init__.py -> build/lib/coppafish/extract
2022-08-24T15:25:08,708   copying coppafish/extract/deconvolution.py -> build/lib/coppafish/extract
2022-08-24T15:25:08,713   copying coppafish/extract/fstack.py -> build/lib/coppafish/extract
2022-08-24T15:25:08,719   copying coppafish/extract/scale.py -> build/lib/coppafish/extract
2022-08-24T15:25:08,725   creating build/lib/coppafish/stitch
2022-08-24T15:25:08,726   copying coppafish/stitch/starting_shifts.py -> build/lib/coppafish/stitch
2022-08-24T15:25:08,730   copying coppafish/stitch/check_shifts.py -> build/lib/coppafish/stitch
2022-08-24T15:25:08,734   copying coppafish/stitch/shift.py -> build/lib/coppafish/stitch
2022-08-24T15:25:08,740   copying coppafish/stitch/__init__.py -> build/lib/coppafish/stitch
2022-08-24T15:25:08,744   copying coppafish/stitch/tile_origin.py -> build/lib/coppafish/stitch
2022-08-24T15:25:08,749   creating build/lib/coppafish/call_spots
2022-08-24T15:25:08,751   copying coppafish/call_spots/background.py -> build/lib/coppafish/call_spots
2022-08-24T15:25:08,755   copying coppafish/call_spots/base.py -> build/lib/coppafish/call_spots
2022-08-24T15:25:08,759   copying coppafish/call_spots/qual_check_optimised.py -> build/lib/coppafish/call_spots
2022-08-24T15:25:08,769   copying coppafish/call_spots/dot_product_optimised.py -> build/lib/coppafish/call_spots
2022-08-24T15:25:08,772   copying coppafish/call_spots/__init__.py -> build/lib/coppafish/call_spots
2022-08-24T15:25:08,776   copying coppafish/call_spots/background_optimised.py -> build/lib/coppafish/call_spots
2022-08-24T15:25:08,779   copying coppafish/call_spots/dot_product.py -> build/lib/coppafish/call_spots
2022-08-24T15:25:08,783   copying coppafish/call_spots/bleed_matrix.py -> build/lib/coppafish/call_spots
2022-08-24T15:25:08,789   copying coppafish/call_spots/qual_check.py -> build/lib/coppafish/call_spots
2022-08-24T15:25:08,794   creating build/lib/coppafish/plot
2022-08-24T15:25:08,795   copying coppafish/plot/raw.py -> build/lib/coppafish/plot
2022-08-24T15:25:08,800   copying coppafish/plot/__init__.py -> build/lib/coppafish/plot
2022-08-24T15:25:08,804   creating build/lib/coppafish/find_spots
2022-08-24T15:25:08,806   copying coppafish/find_spots/check_spots.py -> build/lib/coppafish/find_spots
2022-08-24T15:25:08,810   copying coppafish/find_spots/base.py -> build/lib/coppafish/find_spots
2022-08-24T15:25:08,814   copying coppafish/find_spots/detect.py -> build/lib/coppafish/find_spots
2022-08-24T15:25:08,818   copying coppafish/find_spots/__init__.py -> build/lib/coppafish/find_spots
2022-08-24T15:25:08,821   copying coppafish/find_spots/detect_optimised.py -> build/lib/coppafish/find_spots
2022-08-24T15:25:08,827   creating build/lib/coppafish/setup
2022-08-24T15:25:08,828   copying coppafish/setup/__init__.py -> build/lib/coppafish/setup
2022-08-24T15:25:08,831   copying coppafish/setup/file_names.py -> build/lib/coppafish/setup
2022-08-24T15:25:08,836   copying coppafish/setup/notebook.py -> build/lib/coppafish/setup
2022-08-24T15:25:08,843   copying coppafish/setup/tile_details.py -> build/lib/coppafish/setup
2022-08-24T15:25:08,846   copying coppafish/setup/config.py -> build/lib/coppafish/setup
2022-08-24T15:25:08,854   creating build/lib/coppafish/omp
2022-08-24T15:25:08,855   copying coppafish/omp/spots.py -> build/lib/coppafish/omp
2022-08-24T15:25:08,861   copying coppafish/omp/base.py -> build/lib/coppafish/omp
2022-08-24T15:25:08,864   copying coppafish/omp/__init__.py -> build/lib/coppafish/omp
2022-08-24T15:25:08,868   copying coppafish/omp/coefs.py -> build/lib/coppafish/omp
2022-08-24T15:25:08,873   copying coppafish/omp/coefs_optimised.py -> build/lib/coppafish/omp
2022-08-24T15:25:08,880   creating build/lib/coppafish/spot_colors
2022-08-24T15:25:08,882   copying coppafish/spot_colors/base.py -> build/lib/coppafish/spot_colors
2022-08-24T15:25:08,887   copying coppafish/spot_colors/base_optimised.py -> build/lib/coppafish/spot_colors
2022-08-24T15:25:08,891   copying coppafish/spot_colors/__init__.py -> build/lib/coppafish/spot_colors
2022-08-24T15:25:08,895   creating build/lib/coppafish/register
2022-08-24T15:25:08,897   copying coppafish/register/base.py -> build/lib/coppafish/register
2022-08-24T15:25:08,903   copying coppafish/register/__init__.py -> build/lib/coppafish/register
2022-08-24T15:25:08,906   copying coppafish/register/check_transforms.py -> build/lib/coppafish/register
2022-08-24T15:25:08,912   creating build/lib/coppafish/utils
2022-08-24T15:25:08,914   copying coppafish/utils/nd2.py -> build/lib/coppafish/utils
2022-08-24T15:25:08,918   copying coppafish/utils/base.py -> build/lib/coppafish/utils
2022-08-24T15:25:08,922   copying coppafish/utils/spot_images.py -> build/lib/coppafish/utils
2022-08-24T15:25:08,926   copying coppafish/utils/strel.py -> build/lib/coppafish/utils
2022-08-24T15:25:08,930   copying coppafish/utils/raw.py -> build/lib/coppafish/utils
2022-08-24T15:25:08,934   copying coppafish/utils/pciseq.py -> build/lib/coppafish/utils
2022-08-24T15:25:08,938   copying coppafish/utils/errors.py -> build/lib/coppafish/utils
2022-08-24T15:25:08,942   copying coppafish/utils/warnings.py -> build/lib/coppafish/utils
2022-08-24T15:25:08,945   copying coppafish/utils/__init__.py -> build/lib/coppafish/utils
2022-08-24T15:25:08,948   copying coppafish/utils/matlab.py -> build/lib/coppafish/utils
2022-08-24T15:25:08,952   copying coppafish/utils/npy.py -> build/lib/coppafish/utils
2022-08-24T15:25:08,958   creating build/lib/coppafish/plot/results_viewer
2022-08-24T15:25:08,960   copying coppafish/plot/results_viewer/base.py -> build/lib/coppafish/plot/results_viewer
2022-08-24T15:25:08,966   copying coppafish/plot/results_viewer/__init__.py -> build/lib/coppafish/plot/results_viewer
2022-08-24T15:25:08,969   copying coppafish/plot/results_viewer/legend.py -> build/lib/coppafish/plot/results_viewer
2022-08-24T15:25:08,974   creating build/lib/coppafish/plot/extract
2022-08-24T15:25:08,976   copying coppafish/plot/extract/viewer.py -> build/lib/coppafish/plot/extract
2022-08-24T15:25:08,981   copying coppafish/plot/extract/__init__.py -> build/lib/coppafish/plot/extract
2022-08-24T15:25:08,984   copying coppafish/plot/extract/diagnostics.py -> build/lib/coppafish/plot/extract
2022-08-24T15:25:08,990   creating build/lib/coppafish/plot/stitch
2022-08-24T15:25:08,991   copying coppafish/plot/stitch/shift.py -> build/lib/coppafish/plot/stitch
2022-08-24T15:25:08,996   copying coppafish/plot/stitch/__init__.py -> build/lib/coppafish/plot/stitch
2022-08-24T15:25:08,999   copying coppafish/plot/stitch/diagnostics.py -> build/lib/coppafish/plot/stitch
2022-08-24T15:25:09,004   copying coppafish/plot/stitch/point_clouds.py -> build/lib/coppafish/plot/stitch
2022-08-24T15:25:09,012   creating build/lib/coppafish/plot/call_spots
2022-08-24T15:25:09,014   copying coppafish/plot/call_spots/spot_colors.py -> build/lib/coppafish/plot/call_spots
2022-08-24T15:25:09,020   copying coppafish/plot/call_spots/background.py -> build/lib/coppafish/plot/call_spots
2022-08-24T15:25:09,024   copying coppafish/plot/call_spots/weight.py -> build/lib/coppafish/plot/call_spots
2022-08-24T15:25:09,029   copying coppafish/plot/call_spots/score_calc.py -> build/lib/coppafish/plot/call_spots
2022-08-24T15:25:09,032   copying coppafish/plot/call_spots/__init__.py -> build/lib/coppafish/plot/call_spots
2022-08-24T15:25:09,036   copying coppafish/plot/call_spots/dot_product.py -> build/lib/coppafish/plot/call_spots
2022-08-24T15:25:09,041   copying coppafish/plot/call_spots/bleed_matrix.py -> build/lib/coppafish/plot/call_spots
2022-08-24T15:25:09,046   copying coppafish/plot/call_spots/scaled_k_means.py -> build/lib/coppafish/plot/call_spots
2022-08-24T15:25:09,050   copying coppafish/plot/call_spots/gene_counts.py -> build/lib/coppafish/plot/call_spots
2022-08-24T15:25:09,056   creating build/lib/coppafish/plot/find_spots
2022-08-24T15:25:09,058   copying coppafish/plot/find_spots/n_spots.py -> build/lib/coppafish/plot/find_spots
2022-08-24T15:25:09,062   copying coppafish/plot/find_spots/viewer.py -> build/lib/coppafish/plot/find_spots
2022-08-24T15:25:09,066   copying coppafish/plot/find_spots/__init__.py -> build/lib/coppafish/plot/find_spots
2022-08-24T15:25:09,071   creating build/lib/coppafish/plot/omp
2022-08-24T15:25:09,072   copying coppafish/plot/omp/track_fit.py -> build/lib/coppafish/plot/omp
2022-08-24T15:25:09,076   copying coppafish/plot/omp/__init__.py -> build/lib/coppafish/plot/omp
2022-08-24T15:25:09,080   copying coppafish/plot/omp/score_shape.py -> build/lib/coppafish/plot/omp
2022-08-24T15:25:09,085   copying coppafish/plot/omp/coefs.py -> build/lib/coppafish/plot/omp
2022-08-24T15:25:09,090   copying coppafish/plot/omp/score_hist.py -> build/lib/coppafish/plot/omp
2022-08-24T15:25:09,096   creating build/lib/coppafish/plot/register
2022-08-24T15:25:09,098   copying coppafish/plot/register/icp.py -> build/lib/coppafish/plot/register
2022-08-24T15:25:09,103   copying coppafish/plot/register/shift.py -> build/lib/coppafish/plot/register
2022-08-24T15:25:09,106   copying coppafish/plot/register/__init__.py -> build/lib/coppafish/plot/register
2022-08-24T15:25:09,110   copying coppafish/plot/register/diagnostics.py -> build/lib/coppafish/plot/register
2022-08-24T15:25:09,115   creating build/lib/coppafish/utils/morphology
2022-08-24T15:25:09,117   copying coppafish/utils/morphology/base.py -> build/lib/coppafish/utils/morphology
2022-08-24T15:25:09,122   copying coppafish/utils/morphology/filter_optimised.py -> build/lib/coppafish/utils/morphology
2022-08-24T15:25:09,126   copying coppafish/utils/morphology/__init__.py -> build/lib/coppafish/utils/morphology
2022-08-24T15:25:09,129   copying coppafish/utils/morphology/filter.py -> build/lib/coppafish/utils/morphology
2022-08-24T15:25:09,139   copying coppafish/setup/settings.default.ini -> build/lib/coppafish/setup
2022-08-24T15:25:09,146   copying coppafish/setup/notebook_comments.json -> build/lib/coppafish/setup
2022-08-24T15:25:09,152   copying coppafish/setup/dye_camera_laser_raw_intensity.csv -> build/lib/coppafish/setup
2022-08-24T15:25:09,157   copying coppafish/plot/results_viewer/cell_color.csv -> build/lib/coppafish/plot/results_viewer
2022-08-24T15:25:09,161   copying coppafish/plot/results_viewer/cellClassColors.json -> build/lib/coppafish/plot/results_viewer
2022-08-24T15:25:09,165   copying coppafish/plot/results_viewer/gene_color.csv -> build/lib/coppafish/plot/results_viewer
2022-08-24T15:25:09,898   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-08-24T15:25:09,898     warnings.warn(
2022-08-24T15:25:10,554   installing to build/bdist.linux-armv7l/wheel
2022-08-24T15:25:10,555   running install
2022-08-24T15:25:10,616   running install_lib
2022-08-24T15:25:11,274   creating build/bdist.linux-armv7l
2022-08-24T15:25:11,275   creating build/bdist.linux-armv7l/wheel
2022-08-24T15:25:11,278   creating build/bdist.linux-armv7l/wheel/coppafish
2022-08-24T15:25:11,281   creating build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-24T15:25:11,283   copying build/lib/coppafish/pipeline/find_spots.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-24T15:25:11,288   copying build/lib/coppafish/pipeline/register_initial.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-24T15:25:11,292   copying build/lib/coppafish/pipeline/call_reference_spots.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-24T15:25:11,297   copying build/lib/coppafish/pipeline/basic_info.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-24T15:25:11,301   copying build/lib/coppafish/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-24T15:25:11,305   copying build/lib/coppafish/pipeline/omp.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-24T15:25:11,310   copying build/lib/coppafish/pipeline/get_reference_spots.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-24T15:25:11,314   copying build/lib/coppafish/pipeline/register.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-24T15:25:11,318   copying build/lib/coppafish/pipeline/stitch.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-24T15:25:11,323   copying build/lib/coppafish/pipeline/extract_run.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-24T15:25:11,327   copying build/lib/coppafish/pipeline/run.py -> build/bdist.linux-armv7l/wheel/coppafish/pipeline
2022-08-24T15:25:11,333   creating build/bdist.linux-armv7l/wheel/coppafish/extract
2022-08-24T15:25:11,334   copying build/lib/coppafish/extract/base.py -> build/bdist.linux-armv7l/wheel/coppafish/extract
2022-08-24T15:25:11,339   copying build/lib/coppafish/extract/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/extract
2022-08-24T15:25:11,342   copying build/lib/coppafish/extract/deconvolution.py -> build/bdist.linux-armv7l/wheel/coppafish/extract
2022-08-24T15:25:11,347   copying build/lib/coppafish/extract/fstack.py -> build/bdist.linux-armv7l/wheel/coppafish/extract
2022-08-24T15:25:11,351   copying build/lib/coppafish/extract/scale.py -> build/bdist.linux-armv7l/wheel/coppafish/extract
2022-08-24T15:25:11,355   copying build/lib/coppafish/__main__.py -> build/bdist.linux-armv7l/wheel/coppafish
2022-08-24T15:25:11,359   creating build/bdist.linux-armv7l/wheel/coppafish/stitch
2022-08-24T15:25:11,361   copying build/lib/coppafish/stitch/starting_shifts.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch
2022-08-24T15:25:11,365   copying build/lib/coppafish/stitch/check_shifts.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch
2022-08-24T15:25:11,369   copying build/lib/coppafish/stitch/shift.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch
2022-08-24T15:25:11,374   copying build/lib/coppafish/stitch/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch
2022-08-24T15:25:11,377   copying build/lib/coppafish/stitch/tile_origin.py -> build/bdist.linux-armv7l/wheel/coppafish/stitch
2022-08-24T15:25:11,382   creating build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-24T15:25:11,383   copying build/lib/coppafish/call_spots/background.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-24T15:25:11,388   copying build/lib/coppafish/call_spots/base.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-24T15:25:11,392   copying build/lib/coppafish/call_spots/qual_check_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-24T15:25:11,395   copying build/lib/coppafish/call_spots/dot_product_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-24T15:25:11,399   copying build/lib/coppafish/call_spots/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-24T15:25:11,403   copying build/lib/coppafish/call_spots/background_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-24T15:25:11,406   copying build/lib/coppafish/call_spots/dot_product.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-24T15:25:11,410   copying build/lib/coppafish/call_spots/bleed_matrix.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-24T15:25:11,415   copying build/lib/coppafish/call_spots/qual_check.py -> build/bdist.linux-armv7l/wheel/coppafish/call_spots
2022-08-24T15:25:11,419   copying build/lib/coppafish/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish
2022-08-24T15:25:11,423   creating build/bdist.linux-armv7l/wheel/coppafish/plot
2022-08-24T15:25:11,426   creating build/bdist.linux-armv7l/wheel/coppafish/plot/results_viewer
2022-08-24T15:25:11,428   copying build/lib/coppafish/plot/results_viewer/base.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/results_viewer
2022-08-24T15:25:11,434   copying build/lib/coppafish/plot/results_viewer/gene_color.csv -> build/bdist.linux-armv7l/wheel/coppafish/plot/results_viewer
2022-08-24T15:25:11,437   copying build/lib/coppafish/plot/results_viewer/cell_color.csv -> build/bdist.linux-armv7l/wheel/coppafish/plot/results_viewer
2022-08-24T15:25:11,440   copying build/lib/coppafish/plot/results_viewer/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/results_viewer
2022-08-24T15:25:11,443   copying build/lib/coppafish/plot/results_viewer/cellClassColors.json -> build/bdist.linux-armv7l/wheel/coppafish/plot/results_viewer
2022-08-24T15:25:11,447   copying build/lib/coppafish/plot/results_viewer/legend.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/results_viewer
2022-08-24T15:25:11,453   creating build/bdist.linux-armv7l/wheel/coppafish/plot/extract
2022-08-24T15:25:11,454   copying build/lib/coppafish/plot/extract/viewer.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/extract
2022-08-24T15:25:11,459   copying build/lib/coppafish/plot/extract/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/extract
2022-08-24T15:25:11,464   copying build/lib/coppafish/plot/extract/diagnostics.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/extract
2022-08-24T15:25:11,469   copying build/lib/coppafish/plot/raw.py -> build/bdist.linux-armv7l/wheel/coppafish/plot
2022-08-24T15:25:11,477   creating build/bdist.linux-armv7l/wheel/coppafish/plot/stitch
2022-08-24T15:25:11,479   copying build/lib/coppafish/plot/stitch/shift.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/stitch
2022-08-24T15:25:11,485   copying build/lib/coppafish/plot/stitch/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/stitch
2022-08-24T15:25:11,488   copying build/lib/coppafish/plot/stitch/diagnostics.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/stitch
2022-08-24T15:25:11,493   copying build/lib/coppafish/plot/stitch/point_clouds.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/stitch
2022-08-24T15:25:11,499   creating build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-24T15:25:11,500   copying build/lib/coppafish/plot/call_spots/spot_colors.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-24T15:25:11,506   copying build/lib/coppafish/plot/call_spots/background.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-24T15:25:11,511   copying build/lib/coppafish/plot/call_spots/weight.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-24T15:25:11,516   copying build/lib/coppafish/plot/call_spots/score_calc.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-24T15:25:11,520   copying build/lib/coppafish/plot/call_spots/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-24T15:25:11,523   copying build/lib/coppafish/plot/call_spots/dot_product.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-24T15:25:11,528   copying build/lib/coppafish/plot/call_spots/bleed_matrix.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-24T15:25:11,533   copying build/lib/coppafish/plot/call_spots/scaled_k_means.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-24T15:25:11,537   copying build/lib/coppafish/plot/call_spots/gene_counts.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/call_spots
2022-08-24T15:25:11,542   copying build/lib/coppafish/plot/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot
2022-08-24T15:25:11,547   creating build/bdist.linux-armv7l/wheel/coppafish/plot/find_spots
2022-08-24T15:25:11,549   copying build/lib/coppafish/plot/find_spots/n_spots.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/find_spots
2022-08-24T15:25:11,553   copying build/lib/coppafish/plot/find_spots/viewer.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/find_spots
2022-08-24T15:25:11,558   copying build/lib/coppafish/plot/find_spots/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/find_spots
2022-08-24T15:25:11,563   creating build/bdist.linux-armv7l/wheel/coppafish/plot/omp
2022-08-24T15:25:11,564   copying build/lib/coppafish/plot/omp/track_fit.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/omp
2022-08-24T15:25:11,569   copying build/lib/coppafish/plot/omp/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/omp
2022-08-24T15:25:11,572   copying build/lib/coppafish/plot/omp/score_shape.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/omp
2022-08-24T15:25:11,577   copying build/lib/coppafish/plot/omp/coefs.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/omp
2022-08-24T15:25:11,582   copying build/lib/coppafish/plot/omp/score_hist.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/omp
2022-08-24T15:25:11,588   creating build/bdist.linux-armv7l/wheel/coppafish/plot/register
2022-08-24T15:25:11,589   copying build/lib/coppafish/plot/register/icp.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/register
2022-08-24T15:25:11,595   copying build/lib/coppafish/plot/register/shift.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/register
2022-08-24T15:25:11,599   copying build/lib/coppafish/plot/register/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/register
2022-08-24T15:25:11,603   copying build/lib/coppafish/plot/register/diagnostics.py -> build/bdist.linux-armv7l/wheel/coppafish/plot/register
2022-08-24T15:25:11,608   creating build/bdist.linux-armv7l/wheel/coppafish/find_spots
2022-08-24T15:25:11,610   copying build/lib/coppafish/find_spots/check_spots.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots
2022-08-24T15:25:11,614   copying build/lib/coppafish/find_spots/base.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots
2022-08-24T15:25:11,619   copying build/lib/coppafish/find_spots/detect.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots
2022-08-24T15:25:11,623   copying build/lib/coppafish/find_spots/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots
2022-08-24T15:25:11,627   copying build/lib/coppafish/find_spots/detect_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/find_spots
2022-08-24T15:25:11,633   creating build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-24T15:25:11,634   copying build/lib/coppafish/setup/notebook_comments.json -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-24T15:25:11,640   copying build/lib/coppafish/setup/dye_camera_laser_raw_intensity.csv -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-24T15:25:11,645   copying build/lib/coppafish/setup/settings.default.ini -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-24T15:25:11,651   copying build/lib/coppafish/setup/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-24T15:25:11,654   copying build/lib/coppafish/setup/file_names.py -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-24T15:25:11,658   copying build/lib/coppafish/setup/notebook.py -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-24T15:25:11,663   copying build/lib/coppafish/setup/tile_details.py -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-24T15:25:11,667   copying build/lib/coppafish/setup/config.py -> build/bdist.linux-armv7l/wheel/coppafish/setup
2022-08-24T15:25:11,673   creating build/bdist.linux-armv7l/wheel/coppafish/omp
2022-08-24T15:25:11,675   copying build/lib/coppafish/omp/spots.py -> build/bdist.linux-armv7l/wheel/coppafish/omp
2022-08-24T15:25:11,680   copying build/lib/coppafish/omp/base.py -> build/bdist.linux-armv7l/wheel/coppafish/omp
2022-08-24T15:25:11,683   copying build/lib/coppafish/omp/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/omp
2022-08-24T15:25:11,687   copying build/lib/coppafish/omp/coefs.py -> build/bdist.linux-armv7l/wheel/coppafish/omp
2022-08-24T15:25:11,692   copying build/lib/coppafish/omp/coefs_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/omp
2022-08-24T15:25:11,699   creating build/bdist.linux-armv7l/wheel/coppafish/spot_colors
2022-08-24T15:25:11,700   copying build/lib/coppafish/spot_colors/base.py -> build/bdist.linux-armv7l/wheel/coppafish/spot_colors
2022-08-24T15:25:11,705   copying build/lib/coppafish/spot_colors/base_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/spot_colors
2022-08-24T15:25:11,709   copying build/lib/coppafish/spot_colors/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/spot_colors
2022-08-24T15:25:11,712   copying build/lib/coppafish/_version.py -> build/bdist.linux-armv7l/wheel/coppafish
2022-08-24T15:25:11,717   creating build/bdist.linux-armv7l/wheel/coppafish/register
2022-08-24T15:25:11,718   copying build/lib/coppafish/register/base.py -> build/bdist.linux-armv7l/wheel/coppafish/register
2022-08-24T15:25:11,724   copying build/lib/coppafish/register/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/register
2022-08-24T15:25:11,727   copying build/lib/coppafish/register/check_transforms.py -> build/bdist.linux-armv7l/wheel/coppafish/register
2022-08-24T15:25:11,733   creating build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-24T15:25:11,734   copying build/lib/coppafish/utils/nd2.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-24T15:25:11,739   copying build/lib/coppafish/utils/base.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-24T15:25:11,742   copying build/lib/coppafish/utils/spot_images.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-24T15:25:11,746   copying build/lib/coppafish/utils/strel.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-24T15:25:11,751   copying build/lib/coppafish/utils/raw.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-24T15:25:11,755   copying build/lib/coppafish/utils/pciseq.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-24T15:25:11,759   copying build/lib/coppafish/utils/errors.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-24T15:25:11,763   copying build/lib/coppafish/utils/warnings.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-24T15:25:11,766   copying build/lib/coppafish/utils/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-24T15:25:11,770   copying build/lib/coppafish/utils/matlab.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-24T15:25:11,774   copying build/lib/coppafish/utils/npy.py -> build/bdist.linux-armv7l/wheel/coppafish/utils
2022-08-24T15:25:11,780   creating build/bdist.linux-armv7l/wheel/coppafish/utils/morphology
2022-08-24T15:25:11,781   copying build/lib/coppafish/utils/morphology/base.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/morphology
2022-08-24T15:25:11,786   copying build/lib/coppafish/utils/morphology/filter_optimised.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/morphology
2022-08-24T15:25:11,790   copying build/lib/coppafish/utils/morphology/__init__.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/morphology
2022-08-24T15:25:11,793   copying build/lib/coppafish/utils/morphology/filter.py -> build/bdist.linux-armv7l/wheel/coppafish/utils/morphology
2022-08-24T15:25:11,796   running install_egg_info
2022-08-24T15:25:13,144   running egg_info
2022-08-24T15:25:13,797   writing coppafish.egg-info/PKG-INFO
2022-08-24T15:25:14,357   writing dependency_links to coppafish.egg-info/dependency_links.txt
2022-08-24T15:25:17,136   writing requirements to coppafish.egg-info/requires.txt
2022-08-24T15:25:17,693   writing top-level names to coppafish.egg-info/top_level.txt
2022-08-24T15:25:17,834   reading manifest file 'coppafish.egg-info/SOURCES.txt'
2022-08-24T15:25:17,844   adding license file 'LICENSE.md'
2022-08-24T15:25:17,861   writing manifest file 'coppafish.egg-info/SOURCES.txt'
2022-08-24T15:25:17,865   Copying coppafish.egg-info to build/bdist.linux-armv7l/wheel/coppafish-0.1.6-py3.9.egg-info
2022-08-24T15:25:17,887   running install_scripts
2022-08-24T15:25:18,102   adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*")
2022-08-24T15:25:18,112   creating build/bdist.linux-armv7l/wheel/coppafish-0.1.6.dist-info/WHEEL
2022-08-24T15:25:18,117   creating '/tmp/pip-wheel-ug62o2l9/coppafish-0.1.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-08-24T15:25:18,123   adding 'coppafish/__init__.py'
2022-08-24T15:25:18,126   adding 'coppafish/__main__.py'
2022-08-24T15:25:18,129   adding 'coppafish/_version.py'
2022-08-24T15:25:18,133   adding 'coppafish/call_spots/__init__.py'
2022-08-24T15:25:18,138   adding 'coppafish/call_spots/background.py'
2022-08-24T15:25:18,141   adding 'coppafish/call_spots/background_optimised.py'
2022-08-24T15:25:18,147   adding 'coppafish/call_spots/base.py'
2022-08-24T15:25:18,153   adding 'coppafish/call_spots/bleed_matrix.py'
2022-08-24T15:25:18,156   adding 'coppafish/call_spots/dot_product.py'
2022-08-24T15:25:18,160   adding 'coppafish/call_spots/dot_product_optimised.py'
2022-08-24T15:25:18,163   adding 'coppafish/call_spots/qual_check.py'
2022-08-24T15:25:18,166   adding 'coppafish/call_spots/qual_check_optimised.py'
2022-08-24T15:25:18,174   adding 'coppafish/extract/__init__.py'
2022-08-24T15:25:18,178   adding 'coppafish/extract/base.py'
2022-08-24T15:25:18,182   adding 'coppafish/extract/deconvolution.py'
2022-08-24T15:25:18,187   adding 'coppafish/extract/fstack.py'
2022-08-24T15:25:18,192   adding 'coppafish/extract/scale.py'
2022-08-24T15:25:18,196   adding 'coppafish/find_spots/__init__.py'
2022-08-24T15:25:18,200   adding 'coppafish/find_spots/base.py'
2022-08-24T15:25:18,203   adding 'coppafish/find_spots/check_spots.py'
2022-08-24T15:25:18,207   adding 'coppafish/find_spots/detect.py'
2022-08-24T15:25:18,211   adding 'coppafish/find_spots/detect_optimised.py'
2022-08-24T15:25:18,215   adding 'coppafish/omp/__init__.py'
2022-08-24T15:25:18,218   adding 'coppafish/omp/base.py'
2022-08-24T15:25:18,225   adding 'coppafish/omp/coefs.py'
2022-08-24T15:25:18,233   adding 'coppafish/omp/coefs_optimised.py'
2022-08-24T15:25:18,241   adding 'coppafish/omp/spots.py'
2022-08-24T15:25:18,245   adding 'coppafish/pipeline/__init__.py'
2022-08-24T15:25:18,250   adding 'coppafish/pipeline/basic_info.py'
2022-08-24T15:25:18,256   adding 'coppafish/pipeline/call_reference_spots.py'
2022-08-24T15:25:18,262   adding 'coppafish/pipeline/extract_run.py'
2022-08-24T15:25:18,266   adding 'coppafish/pipeline/find_spots.py'
2022-08-24T15:25:18,270   adding 'coppafish/pipeline/get_reference_spots.py'
2022-08-24T15:25:18,276   adding 'coppafish/pipeline/omp.py'
2022-08-24T15:25:18,280   adding 'coppafish/pipeline/register.py'
2022-08-24T15:25:18,284   adding 'coppafish/pipeline/register_initial.py'
2022-08-24T15:25:18,289   adding 'coppafish/pipeline/run.py'
2022-08-24T15:25:18,294   adding 'coppafish/pipeline/stitch.py'
2022-08-24T15:25:18,298   adding 'coppafish/plot/__init__.py'
2022-08-24T15:25:18,302   adding 'coppafish/plot/raw.py'
2022-08-24T15:25:18,306   adding 'coppafish/plot/call_spots/__init__.py'
2022-08-24T15:25:18,311   adding 'coppafish/plot/call_spots/background.py'
2022-08-24T15:25:18,315   adding 'coppafish/plot/call_spots/bleed_matrix.py'
2022-08-24T15:25:18,321   adding 'coppafish/plot/call_spots/dot_product.py'
2022-08-24T15:25:18,327   adding 'coppafish/plot/call_spots/gene_counts.py'
2022-08-24T15:25:18,331   adding 'coppafish/plot/call_spots/scaled_k_means.py'
2022-08-24T15:25:18,335   adding 'coppafish/plot/call_spots/score_calc.py'
2022-08-24T15:25:18,341   adding 'coppafish/plot/call_spots/spot_colors.py'
2022-08-24T15:25:18,347   adding 'coppafish/plot/call_spots/weight.py'
2022-08-24T15:25:18,351   adding 'coppafish/plot/extract/__init__.py'
2022-08-24T15:25:18,355   adding 'coppafish/plot/extract/diagnostics.py'
2022-08-24T15:25:18,361   adding 'coppafish/plot/extract/viewer.py'
2022-08-24T15:25:18,365   adding 'coppafish/plot/find_spots/__init__.py'
2022-08-24T15:25:18,368   adding 'coppafish/plot/find_spots/n_spots.py'
2022-08-24T15:25:18,374   adding 'coppafish/plot/find_spots/viewer.py'
2022-08-24T15:25:18,379   adding 'coppafish/plot/omp/__init__.py'
2022-08-24T15:25:18,384   adding 'coppafish/plot/omp/coefs.py'
2022-08-24T15:25:18,390   adding 'coppafish/plot/omp/score_hist.py'
2022-08-24T15:25:18,396   adding 'coppafish/plot/omp/score_shape.py'
2022-08-24T15:25:18,399   adding 'coppafish/plot/omp/track_fit.py'
2022-08-24T15:25:18,403   adding 'coppafish/plot/register/__init__.py'
2022-08-24T15:25:18,408   adding 'coppafish/plot/register/diagnostics.py'
2022-08-24T15:25:18,414   adding 'coppafish/plot/register/icp.py'
2022-08-24T15:25:18,419   adding 'coppafish/plot/register/shift.py'
2022-08-24T15:25:18,423   adding 'coppafish/plot/results_viewer/__init__.py'
2022-08-24T15:25:18,431   adding 'coppafish/plot/results_viewer/base.py'
2022-08-24T15:25:18,435   adding 'coppafish/plot/results_viewer/cellClassColors.json'
2022-08-24T15:25:18,439   adding 'coppafish/plot/results_viewer/cell_color.csv'
2022-08-24T15:25:18,442   adding 'coppafish/plot/results_viewer/gene_color.csv'
2022-08-24T15:25:18,446   adding 'coppafish/plot/results_viewer/legend.py'
2022-08-24T15:25:18,450   adding 'coppafish/plot/stitch/__init__.py'
2022-08-24T15:25:18,454   adding 'coppafish/plot/stitch/diagnostics.py'
2022-08-24T15:25:18,461   adding 'coppafish/plot/stitch/point_clouds.py'
2022-08-24T15:25:18,467   adding 'coppafish/plot/stitch/shift.py'
2022-08-24T15:25:18,471   adding 'coppafish/register/__init__.py'
2022-08-24T15:25:18,477   adding 'coppafish/register/base.py'
2022-08-24T15:25:18,481   adding 'coppafish/register/check_transforms.py'
2022-08-24T15:25:18,484   adding 'coppafish/setup/__init__.py'
2022-08-24T15:25:18,489   adding 'coppafish/setup/config.py'
2022-08-24T15:25:18,495   adding 'coppafish/setup/dye_camera_laser_raw_intensity.csv'
2022-08-24T15:25:18,498   adding 'coppafish/setup/file_names.py'
2022-08-24T15:25:18,511   adding 'coppafish/setup/notebook.py'
2022-08-24T15:25:18,522   adding 'coppafish/setup/notebook_comments.json'
2022-08-24T15:25:18,535   adding 'coppafish/setup/settings.default.ini'
2022-08-24T15:25:18,539   adding 'coppafish/setup/tile_details.py'
2022-08-24T15:25:18,542   adding 'coppafish/spot_colors/__init__.py'
2022-08-24T15:25:18,546   adding 'coppafish/spot_colors/base.py'
2022-08-24T15:25:18,550   adding 'coppafish/spot_colors/base_optimised.py'
2022-08-24T15:25:18,554   adding 'coppafish/stitch/__init__.py'
2022-08-24T15:25:18,557   adding 'coppafish/stitch/check_shifts.py'
2022-08-24T15:25:18,565   adding 'coppafish/stitch/shift.py'
2022-08-24T15:25:18,568   adding 'coppafish/stitch/starting_shifts.py'
2022-08-24T15:25:18,571   adding 'coppafish/stitch/tile_origin.py'
2022-08-24T15:25:18,575   adding 'coppafish/utils/__init__.py'
2022-08-24T15:25:18,577   adding 'coppafish/utils/base.py'
2022-08-24T15:25:18,581   adding 'coppafish/utils/errors.py'
2022-08-24T15:25:18,585   adding 'coppafish/utils/matlab.py'
2022-08-24T15:25:18,588   adding 'coppafish/utils/nd2.py'
2022-08-24T15:25:18,593   adding 'coppafish/utils/npy.py'
2022-08-24T15:25:18,596   adding 'coppafish/utils/pciseq.py'
2022-08-24T15:25:18,600   adding 'coppafish/utils/raw.py'
2022-08-24T15:25:18,603   adding 'coppafish/utils/spot_images.py'
2022-08-24T15:25:18,608   adding 'coppafish/utils/strel.py'
2022-08-24T15:25:18,610   adding 'coppafish/utils/warnings.py'
2022-08-24T15:25:18,615   adding 'coppafish/utils/morphology/__init__.py'
2022-08-24T15:25:18,620   adding 'coppafish/utils/morphology/base.py'
2022-08-24T15:25:18,623   adding 'coppafish/utils/morphology/filter.py'
2022-08-24T15:25:18,626   adding 'coppafish/utils/morphology/filter_optimised.py'
2022-08-24T15:25:18,631   adding 'coppafish-0.1.6.dist-info/LICENSE.md'
2022-08-24T15:25:18,634   adding 'coppafish-0.1.6.dist-info/METADATA'
2022-08-24T15:25:18,635   adding 'coppafish-0.1.6.dist-info/WHEEL'
2022-08-24T15:25:18,638   adding 'coppafish-0.1.6.dist-info/top_level.txt'
2022-08-24T15:25:18,642   adding 'coppafish-0.1.6.dist-info/RECORD'
2022-08-24T15:25:18,667   removing build/bdist.linux-armv7l/wheel
2022-08-24T15:25:18,996   Building wheel for coppafish (setup.py): finished with status 'done'
2022-08-24T15:25:19,011   Created wheel for coppafish: filename=coppafish-0.1.6-py3-none-any.whl size=281167 sha256=2620c73c0797ed98998dc00bf565780a1002ca6a28d14f07330cac10227c877d
2022-08-24T15:25:19,013   Stored in directory: /tmp/pip-ephem-wheel-cache-h9u3buiw/wheels/43/00/bb/5cdcf1a36740694d0d614fcfa6fcb403142ee04d0e22884b41
2022-08-24T15:25:19,045 Successfully built coppafish
2022-08-24T15:25:19,073 Removed build tracker: '/tmp/pip-build-tracker-o94oxdxy'