2022-08-30T08:55:03,034 Created temporary directory: /tmp/pip-ephem-wheel-cache-599pxpby
2022-08-30T08:55:03,040 Created temporary directory: /tmp/pip-build-tracker-c0anff9y
2022-08-30T08:55:03,040 Initialized build tracking at /tmp/pip-build-tracker-c0anff9y
2022-08-30T08:55:03,041 Created build tracker: /tmp/pip-build-tracker-c0anff9y
2022-08-30T08:55:03,041 Entered build tracker: /tmp/pip-build-tracker-c0anff9y
2022-08-30T08:55:03,042 Created temporary directory: /tmp/pip-wheel-kfdpce08
2022-08-30T08:55:03,116 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-08-30T08:55:03,124 2 location(s) to search for versions of pybiotk:
2022-08-30T08:55:03,124 * https://pypi.org/simple/pybiotk/
2022-08-30T08:55:03,124 * https://www.piwheels.org/simple/pybiotk/
2022-08-30T08:55:03,125 Fetching project page and analyzing links: https://pypi.org/simple/pybiotk/
2022-08-30T08:55:03,126 Getting page https://pypi.org/simple/pybiotk/
2022-08-30T08:55:03,130 Found index url https://pypi.org/simple
2022-08-30T08:55:03,250   Found link https://files.pythonhosted.org/packages/36/39/63bca353f534b61d1b4d184594aa908e15c1ed647e1e722bfcf9ee064dbc/pybiotk-1.0.3.tar.gz#sha256=d1084859e25ae3e660f8ebdc6b9e46343b087390472951edcdfe01ebc6893e2f (from https://pypi.org/simple/pybiotk/), version: 1.0.3
2022-08-30T08:55:03,251   Found link https://files.pythonhosted.org/packages/c2/63/fd2b3ca946c51dc23242f873ba230b22d55298bd2eb2df0fe06a648e6849/pybiotk-1.0.4.tar.gz#sha256=54adb083dc66b5545559eedca9edf8df2723583bc40e366cd60ed93ad9248bef (from https://pypi.org/simple/pybiotk/), version: 1.0.4
2022-08-30T08:55:03,252   Found link https://files.pythonhosted.org/packages/67/96/a92ce5cf084e83cb215b8d8e9656d5bcfe22ae834956bd208e796b50da16/pybiotk-1.0.6.tar.gz#sha256=2c2a12e93a4ad036ebd76bf6a0fb6e0564638d18407117935a5f5b82af0617e1 (from https://pypi.org/simple/pybiotk/), version: 1.0.6
2022-08-30T08:55:03,253   Found link https://files.pythonhosted.org/packages/be/b5/ff3128b3a5181f7169f2fb8072ae82e4589c45e3c08c3964fc77b897a8cf/pybiotk-1.0.7.tar.gz#sha256=8dac3c1cc0aae2aa4d72d33c5006bd57e75d3fb95f69e267a3faa01c5022c471 (from https://pypi.org/simple/pybiotk/), version: 1.0.7
2022-08-30T08:55:03,253 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybiotk/
2022-08-30T08:55:03,254 Getting page https://www.piwheels.org/simple/pybiotk/
2022-08-30T08:55:03,256 Found index url https://www.piwheels.org/simple
2022-08-30T08:55:03,467   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.7-cp37-cp37m-linux_armv7l.whl#sha256=b3374922018f96941d783f8fbd1419523636af0939729833084abfcbc2857815 (from https://www.piwheels.org/simple/pybiotk/)
2022-08-30T08:55:03,467   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.7-cp37-cp37m-linux_armv6l.whl#sha256=b3374922018f96941d783f8fbd1419523636af0939729833084abfcbc2857815 (from https://www.piwheels.org/simple/pybiotk/)
2022-08-30T08:55:03,468   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=3ca3fc7f0e19a74789369a1ab6ee666b4658db1d6547739760037140b35b7e3e (from https://www.piwheels.org/simple/pybiotk/)
2022-08-30T08:55:03,469   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=3ca3fc7f0e19a74789369a1ab6ee666b4658db1d6547739760037140b35b7e3e (from https://www.piwheels.org/simple/pybiotk/)
2022-08-30T08:55:03,469   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp37-cp37m-linux_armv7l.whl#sha256=c2c24578a8c96d074c91314ee034316b005ad82fe94da2f2135b6cca4237b374 (from https://www.piwheels.org/simple/pybiotk/)
2022-08-30T08:55:03,470   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp37-cp37m-linux_armv6l.whl#sha256=c2c24578a8c96d074c91314ee034316b005ad82fe94da2f2135b6cca4237b374 (from https://www.piwheels.org/simple/pybiotk/)
2022-08-30T08:55:03,470   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp39-cp39-linux_armv7l.whl#sha256=50c81a26e08771be990869c49acd65b172ef531d807be2ef54cc44de12463f76 (from https://www.piwheels.org/simple/pybiotk/)
2022-08-30T08:55:03,471   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp39-cp39-linux_armv6l.whl#sha256=50c81a26e08771be990869c49acd65b172ef531d807be2ef54cc44de12463f76 (from https://www.piwheels.org/simple/pybiotk/)
2022-08-30T08:55:03,471   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp37-cp37m-linux_armv7l.whl#sha256=1e5895fe1aa6a3e6127f180defd7a420edf6f8b5f4f1b689995f9758b7286846 (from https://www.piwheels.org/simple/pybiotk/)
2022-08-30T08:55:03,472   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp37-cp37m-linux_armv6l.whl#sha256=1e5895fe1aa6a3e6127f180defd7a420edf6f8b5f4f1b689995f9758b7286846 (from https://www.piwheels.org/simple/pybiotk/)
2022-08-30T08:55:03,472   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=3d07a856b5dfd6012a973e73b174a6b8d70ae723b22a5396f9e1323a3396a327 (from https://www.piwheels.org/simple/pybiotk/)
2022-08-30T08:55:03,473   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=3d07a856b5dfd6012a973e73b174a6b8d70ae723b22a5396f9e1323a3396a327 (from https://www.piwheels.org/simple/pybiotk/)
2022-08-30T08:55:03,473   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=68c34ca6656477c1de6691804d909876e1f42817256079672904805fc0971aca (from https://www.piwheels.org/simple/pybiotk/)
2022-08-30T08:55:03,474   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=68c34ca6656477c1de6691804d909876e1f42817256079672904805fc0971aca (from https://www.piwheels.org/simple/pybiotk/)
2022-08-30T08:55:03,474 Skipping link: not a file: https://www.piwheels.org/simple/pybiotk/
2022-08-30T08:55:03,475 Skipping link: not a file: https://pypi.org/simple/pybiotk/
2022-08-30T08:55:03,523 Given no hashes to check 1 links for project 'pybiotk': discarding no candidates
2022-08-30T08:55:03,568 Collecting pybiotk==1.0.7
2022-08-30T08:55:03,572   Created temporary directory: /tmp/pip-unpack-a50njl6f
2022-08-30T08:55:03,673   Downloading pybiotk-1.0.7.tar.gz (90 kB)
2022-08-30T08:55:04,203   Added pybiotk==1.0.7 from https://files.pythonhosted.org/packages/be/b5/ff3128b3a5181f7169f2fb8072ae82e4589c45e3c08c3964fc77b897a8cf/pybiotk-1.0.7.tar.gz#sha256=8dac3c1cc0aae2aa4d72d33c5006bd57e75d3fb95f69e267a3faa01c5022c471 to build tracker '/tmp/pip-build-tracker-c0anff9y'
2022-08-30T08:55:04,219   Created temporary directory: /tmp/pip-build-env-3mubwdg5
2022-08-30T08:55:04,240   Created temporary directory: /tmp/pip-standalone-pip-6rg876i9
2022-08-30T08:55:06,650   Installing build dependencies: started
2022-08-30T08:55:06,652   Running command pip subprocess to install build dependencies
2022-08-30T08:55:18,100   Using pip 22.1.2 from /tmp/pip-standalone-pip-6rg876i9/__env_pip__.zip/pip (python 3.9)
2022-08-30T08:55:19,913   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-08-30T08:55:23,992   Collecting setuptools>=46.1.0
2022-08-30T08:55:24,269     Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.3.0-py3-none-any.whl (1.2 MB)
2022-08-30T08:55:25,271   Collecting setuptools_scm[toml]>=5
2022-08-30T08:55:25,340     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.0.5-py3-none-any.whl (42 kB)
2022-08-30T08:55:25,884   Collecting wheel
2022-08-30T08:55:25,919     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-08-30T08:55:29,589   Collecting Cython>=0.29.30
2022-08-30T08:55:30,676     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB)
2022-08-30T08:55:31,559   Collecting packaging>=20.0
2022-08-30T08:55:31,593     Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB)
2022-08-30T08:55:31,881   Collecting tomli>=1.0.0
2022-08-30T08:55:31,929     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2022-08-30T08:55:32,229   Collecting typing-extensions
2022-08-30T08:55:32,292     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.3.0-py3-none-any.whl (25 kB)
2022-08-30T08:55:33,989   Collecting pyparsing!=3.0.5,>=2.0.2
2022-08-30T08:55:34,034     Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.9-py3-none-any.whl (98 kB)
2022-08-30T08:55:41,353   Installing collected packages: wheel, typing-extensions, tomli, setuptools, pyparsing, Cython, packaging, setuptools_scm
2022-08-30T08:55:41,652     Creating /tmp/pip-build-env-3mubwdg5/overlay/bin
2022-08-30T08:55:41,656     changing mode of /tmp/pip-build-env-3mubwdg5/overlay/bin/wheel to 755
2022-08-30T08:55:54,275     changing mode of /tmp/pip-build-env-3mubwdg5/overlay/bin/cygdb to 755
2022-08-30T08:55:54,279     changing mode of /tmp/pip-build-env-3mubwdg5/overlay/bin/cython to 755
2022-08-30T08:55:54,284     changing mode of /tmp/pip-build-env-3mubwdg5/overlay/bin/cythonize to 755
2022-08-30T08:55:54,989   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2022-08-30T08:55:54,989   sphinx 5.0.0 requires importlib-metadata>=4.4; python_version < "3.10", but you have importlib-metadata 4.0.1 which is incompatible.
2022-08-30T08:55:54,992   Successfully installed Cython-0.29.32 packaging-21.3 pyparsing-3.0.9 setuptools-65.3.0 setuptools_scm-7.0.5 tomli-2.0.1 typing-extensions-4.3.0 wheel-0.37.1
2022-08-30T08:55:55,194   --- Logging error ---
2022-08-30T08:55:55,211   Traceback (most recent call last):
2022-08-30T08:55:55,212     File "/tmp/pip-standalone-pip-6rg876i9/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit
2022-08-30T08:55:55,212       self.console.print(renderable, overflow="ignore", crop=False, style=style)
2022-08-30T08:55:55,213     File "/tmp/pip-standalone-pip-6rg876i9/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print
2022-08-30T08:55:55,213       extend(render(renderable, render_options))
2022-08-30T08:55:55,214     File "/tmp/pip-standalone-pip-6rg876i9/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render
2022-08-30T08:55:55,214       for render_output in iter_render:
2022-08-30T08:55:55,214     File "/tmp/pip-standalone-pip-6rg876i9/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__
2022-08-30T08:55:55,215       for line in lines:
2022-08-30T08:55:55,215     File "/tmp/pip-standalone-pip-6rg876i9/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines
2022-08-30T08:55:55,215       for segment in segments:
2022-08-30T08:55:55,216     File "/tmp/pip-standalone-pip-6rg876i9/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render
2022-08-30T08:55:55,216       renderable = rich_cast(renderable)
2022-08-30T08:55:55,217     File "/tmp/pip-standalone-pip-6rg876i9/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast
2022-08-30T08:55:55,217       renderable = cast_method()
2022-08-30T08:55:55,218     File "/tmp/pip-standalone-pip-6rg876i9/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__
2022-08-30T08:55:55,218       pip_cmd = get_best_invocation_for_this_pip()
2022-08-30T08:55:55,218     File "/tmp/pip-standalone-pip-6rg876i9/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip
2022-08-30T08:55:55,219       if found_executable and os.path.samefile(
2022-08-30T08:55:55,219     File "/usr/lib/python3.9/genericpath.py", line 101, in samefile
2022-08-30T08:55:55,219       s2 = os.stat(f2)
2022-08-30T08:55:55,219   FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9'
2022-08-30T08:55:55,220   Call stack:
2022-08-30T08:55:55,227     File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main
2022-08-30T08:55:55,228       return _run_code(code, main_globals, None,
2022-08-30T08:55:55,228     File "/usr/lib/python3.9/runpy.py", line 87, in _run_code
2022-08-30T08:55:55,228       exec(code, run_globals)
2022-08-30T08:55:55,229     File "/tmp/pip-standalone-pip-6rg876i9/__env_pip__.zip/pip/__main__.py", line 31, in <module>
2022-08-30T08:55:55,229       sys.exit(_main())
2022-08-30T08:55:55,229     File "/tmp/pip-standalone-pip-6rg876i9/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main
2022-08-30T08:55:55,230       return command.main(cmd_args)
2022-08-30T08:55:55,230     File "/tmp/pip-standalone-pip-6rg876i9/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main
2022-08-30T08:55:55,230       return self._main(args)
2022-08-30T08:55:55,230     File "/tmp/pip-standalone-pip-6rg876i9/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main
2022-08-30T08:55:55,231       self.handle_pip_version_check(options)
2022-08-30T08:55:55,231     File "/tmp/pip-standalone-pip-6rg876i9/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check
2022-08-30T08:55:55,231       pip_self_version_check(session, options)
2022-08-30T08:55:55,232     File "/tmp/pip-standalone-pip-6rg876i9/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check
2022-08-30T08:55:55,232       logger.info("[present-rich] %s", upgrade_prompt)
2022-08-30T08:55:55,232     File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info
2022-08-30T08:55:55,233       self._log(INFO, msg, args, **kwargs)
2022-08-30T08:55:55,233     File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log
2022-08-30T08:55:55,233       self.handle(record)
2022-08-30T08:55:55,233     File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle
2022-08-30T08:55:55,234       self.callHandlers(record)
2022-08-30T08:55:55,234     File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers
2022-08-30T08:55:55,234       hdlr.handle(record)
2022-08-30T08:55:55,235     File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle
2022-08-30T08:55:55,235       self.emit(record)
2022-08-30T08:55:55,235     File "/tmp/pip-standalone-pip-6rg876i9/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit
2022-08-30T08:55:55,235       self.handleError(record)
2022-08-30T08:55:55,236   Message: '[present-rich] %s'
2022-08-30T08:55:55,236   Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),)
2022-08-30T08:55:55,884   Installing build dependencies: finished with status 'done'
2022-08-30T08:55:55,911   Getting requirements to build wheel: started
2022-08-30T08:55:55,913   Running command Getting requirements to build wheel
2022-08-30T08:56:02,562   Compiling src/bx/bitset.pyx because it changed.
2022-08-30T08:56:02,564   Compiling src/bx/cluster.pyx because it changed.
2022-08-30T08:56:02,564   Compiling src/bx/intersection.pyx because it changed.
2022-08-30T08:56:02,565   [1/3] Cythonizing src/bx/bitset.pyx
2022-08-30T08:56:02,565   [2/3] Cythonizing src/bx/cluster.pyx
2022-08-30T08:56:02,565   [3/3] Cythonizing src/bx/intersection.pyx
2022-08-30T08:56:06,673   running egg_info
2022-08-30T08:56:07,280   writing src/pybiotk.egg-info/PKG-INFO
2022-08-30T08:56:07,850   writing dependency_links to src/pybiotk.egg-info/dependency_links.txt
2022-08-30T08:56:09,553   writing entry points to src/pybiotk.egg-info/entry_points.txt
2022-08-30T08:56:10,692   writing requirements to src/pybiotk.egg-info/requires.txt
2022-08-30T08:56:11,260   writing top-level names to src/pybiotk.egg-info/top_level.txt
2022-08-30T08:56:12,709   listing git files failed - pretending there aren't any
2022-08-30T08:56:12,733   reading manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-08-30T08:56:12,750   adding license file 'LICENSE.txt'
2022-08-30T08:56:12,767   writing manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-08-30T08:56:13,131   Getting requirements to build wheel: finished with status 'done'
2022-08-30T08:56:13,160   Created temporary directory: /tmp/pip-modern-metadata-sto75jq8
2022-08-30T08:56:13,165   Preparing metadata (pyproject.toml): started
2022-08-30T08:56:13,167   Running command Preparing metadata (pyproject.toml)
2022-08-30T08:56:20,263   running dist_info
2022-08-30T08:56:20,888   creating /tmp/pip-modern-metadata-sto75jq8/pybiotk.egg-info
2022-08-30T08:56:21,484   writing /tmp/pip-modern-metadata-sto75jq8/pybiotk.egg-info/PKG-INFO
2022-08-30T08:56:22,048   writing dependency_links to /tmp/pip-modern-metadata-sto75jq8/pybiotk.egg-info/dependency_links.txt
2022-08-30T08:56:23,726   writing entry points to /tmp/pip-modern-metadata-sto75jq8/pybiotk.egg-info/entry_points.txt
2022-08-30T08:56:24,846   writing requirements to /tmp/pip-modern-metadata-sto75jq8/pybiotk.egg-info/requires.txt
2022-08-30T08:56:25,404   writing top-level names to /tmp/pip-modern-metadata-sto75jq8/pybiotk.egg-info/top_level.txt
2022-08-30T08:56:25,407   writing manifest file '/tmp/pip-modern-metadata-sto75jq8/pybiotk.egg-info/SOURCES.txt'
2022-08-30T08:56:26,830   listing git files failed - pretending there aren't any
2022-08-30T08:56:26,851   reading manifest file '/tmp/pip-modern-metadata-sto75jq8/pybiotk.egg-info/SOURCES.txt'
2022-08-30T08:56:26,856   adding license file 'LICENSE.txt'
2022-08-30T08:56:26,868   writing manifest file '/tmp/pip-modern-metadata-sto75jq8/pybiotk.egg-info/SOURCES.txt'
2022-08-30T08:56:26,872   creating '/tmp/pip-modern-metadata-sto75jq8/pybiotk-1.0.7.dist-info'
2022-08-30T08:56:27,108   adding license file "LICENSE.txt" (matched pattern "LICENSE.txt")
2022-08-30T08:56:27,448   Preparing metadata (pyproject.toml): finished with status 'done'
2022-08-30T08:56:27,463   Source in /tmp/pip-wheel-kfdpce08/pybiotk_fb4058305b324912bfed096cbbdd6539 has version 1.0.7, which satisfies requirement pybiotk==1.0.7 from https://files.pythonhosted.org/packages/be/b5/ff3128b3a5181f7169f2fb8072ae82e4589c45e3c08c3964fc77b897a8cf/pybiotk-1.0.7.tar.gz#sha256=8dac3c1cc0aae2aa4d72d33c5006bd57e75d3fb95f69e267a3faa01c5022c471
2022-08-30T08:56:27,465   Removed pybiotk==1.0.7 from https://files.pythonhosted.org/packages/be/b5/ff3128b3a5181f7169f2fb8072ae82e4589c45e3c08c3964fc77b897a8cf/pybiotk-1.0.7.tar.gz#sha256=8dac3c1cc0aae2aa4d72d33c5006bd57e75d3fb95f69e267a3faa01c5022c471 from build tracker '/tmp/pip-build-tracker-c0anff9y'
2022-08-30T08:56:27,475 Created temporary directory: /tmp/pip-unpack-fquvx474
2022-08-30T08:56:27,476 Building wheels for collected packages: pybiotk
2022-08-30T08:56:27,486   Created temporary directory: /tmp/pip-wheel-5chx570c
2022-08-30T08:56:27,486   Destination directory: /tmp/pip-wheel-5chx570c
2022-08-30T08:56:27,491   Building wheel for pybiotk (pyproject.toml): started
2022-08-30T08:56:27,493   Running command Building wheel for pybiotk (pyproject.toml)
2022-08-30T08:56:34,050   running bdist_wheel
2022-08-30T08:56:34,743   running build
2022-08-30T08:56:34,743   running build_py
2022-08-30T08:56:35,335   creating build/lib.linux-armv7l-cpython-39
2022-08-30T08:56:35,335   creating build/lib.linux-armv7l-cpython-39/stream
2022-08-30T08:56:35,337   copying src/stream/pipe.py -> build/lib.linux-armv7l-cpython-39/stream
2022-08-30T08:56:35,342   copying src/stream/stream.py -> build/lib.linux-armv7l-cpython-39/stream
2022-08-30T08:56:35,346   copying src/stream/__init__.py -> build/lib.linux-armv7l-cpython-39/stream
2022-08-30T08:56:35,350   creating build/lib.linux-armv7l-cpython-39/pybiotk
2022-08-30T08:56:35,352   copying src/pybiotk/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk
2022-08-30T08:56:35,355   creating build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-08-30T08:56:35,357   copying src/pybiotk/data/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-08-30T08:56:35,361   creating build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-08-30T08:56:35,363   copying src/pybiotk/io/bw.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-08-30T08:56:35,367   copying src/pybiotk/io/gtf.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-08-30T08:56:35,372   copying src/pybiotk/io/fasta.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-08-30T08:56:35,376   copying src/pybiotk/io/bam.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-08-30T08:56:35,381   copying src/pybiotk/io/bed.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-08-30T08:56:35,384   copying src/pybiotk/io/fastq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-08-30T08:56:35,390   copying src/pybiotk/io/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-08-30T08:56:35,395   creating build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-08-30T08:56:35,396   copying src/pybiotk/convert/gtf2bed.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-08-30T08:56:35,401   copying src/pybiotk/convert/bampe_order_by_name.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-08-30T08:56:35,404   copying src/pybiotk/convert/fq2fasta.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-08-30T08:56:35,408   copying src/pybiotk/convert/bed2bedgraph.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-08-30T08:56:35,411   copying src/pybiotk/convert/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-08-30T08:56:35,413   copying src/pybiotk/convert/bam2fastx.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-08-30T08:56:35,418   creating build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-08-30T08:56:35,419   copying src/pybiotk/annodb/transcript.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-08-30T08:56:35,424   copying src/pybiotk/annodb/merged_transcript.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-08-30T08:56:35,427   copying src/pybiotk/annodb/anno.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-08-30T08:56:35,431   copying src/pybiotk/annodb/gene.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-08-30T08:56:35,435   copying src/pybiotk/annodb/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-08-30T08:56:35,440   creating build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-08-30T08:56:35,442   copying src/pybiotk/intervals/merge_intervals.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-08-30T08:56:35,445   copying src/pybiotk/intervals/grange.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-08-30T08:56:35,449   copying src/pybiotk/intervals/merge_bed3.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-08-30T08:56:35,453   copying src/pybiotk/intervals/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-08-30T08:56:35,459   creating build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,460   copying src/pybiotk/utils/merge_row.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,465   copying src/pybiotk/utils/gtf_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,468   copying src/pybiotk/utils/reference_count.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,471   copying src/pybiotk/utils/fragment_size.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,475   copying src/pybiotk/utils/fastq_join.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,479   copying src/pybiotk/utils/seq_random.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,482   copying src/pybiotk/utils/fasta_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,485   copying src/pybiotk/utils/fastq_uniq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,488   copying src/pybiotk/utils/pyanno.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,492   copying src/pybiotk/utils/summary_log.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,496   copying src/pybiotk/utils/rmats_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,500   copying src/pybiotk/utils/utils.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,503   copying src/pybiotk/utils/bam_random.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,507   copying src/pybiotk/utils/reverse_fastx.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,510   copying src/pybiotk/utils/fastx_rename.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,513   copying src/pybiotk/utils/merge_subseq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,516   copying src/pybiotk/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,519   copying src/pybiotk/utils/read_tables.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,522   copying src/pybiotk/utils/normalize.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,525   copying src/pybiotk/utils/subseq_analysis.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-08-30T08:56:35,528   running egg_info
2022-08-30T08:56:36,731   writing src/pybiotk.egg-info/PKG-INFO
2022-08-30T08:56:37,298   writing dependency_links to src/pybiotk.egg-info/dependency_links.txt
2022-08-30T08:56:38,972   writing entry points to src/pybiotk.egg-info/entry_points.txt
2022-08-30T08:56:40,094   writing requirements to src/pybiotk.egg-info/requires.txt
2022-08-30T08:56:40,650   writing top-level names to src/pybiotk.egg-info/top_level.txt
2022-08-30T08:56:40,786   listing git files failed - pretending there aren't any
2022-08-30T08:56:40,808   reading manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-08-30T08:56:40,825   adding license file 'LICENSE.txt'
2022-08-30T08:56:40,841   writing manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-08-30T08:56:40,851   copying src/pybiotk/data/hg38.chrom.sizes -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-08-30T08:56:40,856   copying src/pybiotk/data/mm10.chrom.sizes -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-08-30T08:56:40,872   running build_ext
2022-08-30T08:56:40,884   building 'pybiotk.bx.bitset' extension
2022-08-30T08:56:40,885   creating build/temp.linux-armv7l-cpython-39
2022-08-30T08:56:40,886   creating build/temp.linux-armv7l-cpython-39/build
2022-08-30T08:56:40,887   creating build/temp.linux-armv7l-cpython-39/build/src
2022-08-30T08:56:40,888   creating build/temp.linux-armv7l-cpython-39/build/src/bx
2022-08-30T08:56:40,890   creating build/temp.linux-armv7l-cpython-39/src
2022-08-30T08:56:40,890   creating build/temp.linux-armv7l-cpython-39/src/bx
2022-08-30T08:56:40,892   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c build/src/bx/bitset.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/bitset.o
2022-08-30T08:56:54,009   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/binBits.c -o build/temp.linux-armv7l-cpython-39/src/bx/binBits.o
2022-08-30T08:56:54,945   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/bits.c -o build/temp.linux-armv7l-cpython-39/src/bx/bits.o
2022-08-30T08:56:55,889   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/common.c -o build/temp.linux-armv7l-cpython-39/src/bx/common.o
2022-08-30T08:56:56,331   creating build/lib.linux-armv7l-cpython-39/pybiotk/bx
2022-08-30T08:56:56,332   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/bitset.o build/temp.linux-armv7l-cpython-39/src/bx/binBits.o build/temp.linux-armv7l-cpython-39/src/bx/bits.o build/temp.linux-armv7l-cpython-39/src/bx/common.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so
2022-08-30T08:56:56,655   building 'pybiotk.bx.cluster' extension
2022-08-30T08:56:56,656   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c build/src/bx/cluster.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/cluster.o
2022-08-30T08:57:01,492   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/cluster.c -o build/temp.linux-armv7l-cpython-39/src/bx/cluster.o
2022-08-30T08:57:02,731   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/cluster.o build/temp.linux-armv7l-cpython-39/src/bx/cluster.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so
2022-08-30T08:57:02,984   building 'pybiotk.bx.intersection' extension
2022-08-30T08:57:02,986   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c build/src/bx/intersection.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/intersection.o
2022-08-30T08:57:24,210   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/intersection.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so
2022-08-30T08:57:24,518   running build_scripts
2022-08-30T08:57:24,520   creating build/scripts-3.9
2022-08-30T08:57:24,524   copying rscripts/plot_bar.R -> build/scripts-3.9
2022-08-30T08:57:24,530   copying rscripts/diff_expr_edgeR.R -> build/scripts-3.9
2022-08-30T08:57:24,535   copying rscripts/plot_summary.R -> build/scripts-3.9
2022-08-30T08:57:24,542   copying rscripts/plot_corr.R -> build/scripts-3.9
2022-08-30T08:57:24,547   copying rscripts/plot_FRiPs.R -> build/scripts-3.9
2022-08-30T08:57:24,552   copying rscripts/diff_expr_DESeq2.R -> build/scripts-3.9
2022-08-30T08:57:24,558   copying rscripts/plot_venn.R -> build/scripts-3.9
2022-08-30T08:57:24,562   copying rscripts/plot_rep_cor.R -> build/scripts-3.9
2022-08-30T08:57:24,566   copying rscripts/plot_hist.R -> build/scripts-3.9
2022-08-30T08:57:24,571   copying rscripts/peak_anno.R -> build/scripts-3.9
2022-08-30T08:57:24,576   copying rscripts/plot_deeptools_fragmentsize.R -> build/scripts-3.9
2022-08-30T08:57:24,580   copying rscripts/diff_expr_plot.R -> build/scripts-3.9
2022-08-30T08:57:24,586   copying rscripts/plot_peak_width.R -> build/scripts-3.9
2022-08-30T08:57:24,590   copying scripts/merge_subseq.sh -> build/scripts-3.9
2022-08-30T08:57:24,595   copying scripts/fasta_u2t.sh -> build/scripts-3.9
2022-08-30T08:57:24,599   copying scripts/get_chrom_length.sh -> build/scripts-3.9
2022-08-30T08:57:24,603   copying scripts/fasta_len.sh -> build/scripts-3.9
2022-08-30T08:57:24,608   copying scripts/remove_duplicates.sh -> build/scripts-3.9
2022-08-30T08:57:24,612   copying scripts/fastq_len.sh -> build/scripts-3.9
2022-08-30T08:57:24,617   copying scripts/gtfparser.sh -> build/scripts-3.9
2022-08-30T08:57:25,829   installing to build/bdist.linux-armv7l/wheel
2022-08-30T08:57:25,829   running install
2022-08-30T08:57:25,891   running install_lib
2022-08-30T08:57:26,490   creating build/bdist.linux-armv7l
2022-08-30T08:57:26,491   creating build/bdist.linux-armv7l/wheel
2022-08-30T08:57:26,494   creating build/bdist.linux-armv7l/wheel/stream
2022-08-30T08:57:26,496   copying build/lib.linux-armv7l-cpython-39/stream/pipe.py -> build/bdist.linux-armv7l/wheel/stream
2022-08-30T08:57:26,501   copying build/lib.linux-armv7l-cpython-39/stream/stream.py -> build/bdist.linux-armv7l/wheel/stream
2022-08-30T08:57:26,506   copying build/lib.linux-armv7l-cpython-39/stream/__init__.py -> build/bdist.linux-armv7l/wheel/stream
2022-08-30T08:57:26,511   creating build/bdist.linux-armv7l/wheel/pybiotk
2022-08-30T08:57:26,513   creating build/bdist.linux-armv7l/wheel/pybiotk/data
2022-08-30T08:57:26,515   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/pybiotk/data
2022-08-30T08:57:26,520   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/mm10.chrom.sizes -> build/bdist.linux-armv7l/wheel/pybiotk/data
2022-08-30T08:57:26,524   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/data
2022-08-30T08:57:26,528   creating build/bdist.linux-armv7l/wheel/pybiotk/io
2022-08-30T08:57:26,530   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bw.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-08-30T08:57:26,535   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/gtf.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-08-30T08:57:26,540   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/fasta.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-08-30T08:57:26,544   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bam.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-08-30T08:57:26,549   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bed.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-08-30T08:57:26,553   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/fastq.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-08-30T08:57:26,557   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-08-30T08:57:26,562   creating build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-08-30T08:57:26,563   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-08-30T08:57:26,589   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-08-30T08:57:26,602   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-08-30T08:57:26,640   copying build/lib.linux-armv7l-cpython-39/pybiotk/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk
2022-08-30T08:57:26,643   creating build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-08-30T08:57:26,645   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/gtf2bed.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-08-30T08:57:26,649   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bampe_order_by_name.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-08-30T08:57:26,652   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/fq2fasta.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-08-30T08:57:26,656   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bed2bedgraph.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-08-30T08:57:26,659   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-08-30T08:57:26,662   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bam2fastx.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-08-30T08:57:26,667   creating build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-08-30T08:57:26,668   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/transcript.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-08-30T08:57:26,672   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/merged_transcript.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-08-30T08:57:26,677   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/anno.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-08-30T08:57:26,680   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/gene.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-08-30T08:57:26,684   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-08-30T08:57:26,689   creating build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-08-30T08:57:26,690   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/merge_intervals.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-08-30T08:57:26,694   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/grange.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-08-30T08:57:26,698   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/merge_bed3.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-08-30T08:57:26,701   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-08-30T08:57:26,706   creating build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,708   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/merge_row.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,712   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/gtf_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,715   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/reference_count.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,719   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fragment_size.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,723   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastq_join.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,727   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/seq_random.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,730   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fasta_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,733   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastq_uniq.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,737   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/pyanno.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,741   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/summary_log.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,745   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/rmats_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,749   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/utils.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,753   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/bam_random.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,760   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/reverse_fastx.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,764   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastx_rename.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,767   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/merge_subseq.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,771   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,774   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/read_tables.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,777   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/normalize.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,781   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/subseq_analysis.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-08-30T08:57:26,784   running install_egg_info
2022-08-30T08:57:27,380   Copying src/pybiotk.egg-info to build/bdist.linux-armv7l/wheel/pybiotk-1.0.7-py3.9.egg-info
2022-08-30T08:57:27,414   running install_scripts
2022-08-30T08:57:27,470   creating build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data
2022-08-30T08:57:27,471   creating build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,473   copying build/scripts-3.9/plot_bar.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,477   copying build/scripts-3.9/diff_expr_edgeR.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,482   copying build/scripts-3.9/merge_subseq.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,485   copying build/scripts-3.9/fasta_u2t.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,489   copying build/scripts-3.9/plot_summary.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,493   copying build/scripts-3.9/plot_corr.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,497   copying build/scripts-3.9/plot_FRiPs.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,500   copying build/scripts-3.9/diff_expr_DESeq2.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,504   copying build/scripts-3.9/plot_venn.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,508   copying build/scripts-3.9/plot_rep_cor.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,511   copying build/scripts-3.9/plot_hist.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,515   copying build/scripts-3.9/peak_anno.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,519   copying build/scripts-3.9/get_chrom_length.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,522   copying build/scripts-3.9/fasta_len.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,525   copying build/scripts-3.9/remove_duplicates.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,529   copying build/scripts-3.9/plot_deeptools_fragmentsize.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,532   copying build/scripts-3.9/diff_expr_plot.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,536   copying build/scripts-3.9/plot_peak_width.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,540   copying build/scripts-3.9/fastq_len.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,543   copying build/scripts-3.9/gtfparser.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts
2022-08-30T08:57:27,545   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/plot_bar.R to 755
2022-08-30T08:57:27,546   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/diff_expr_edgeR.R to 755
2022-08-30T08:57:27,546   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/merge_subseq.sh to 755
2022-08-30T08:57:27,547   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/fasta_u2t.sh to 755
2022-08-30T08:57:27,547   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/plot_summary.R to 755
2022-08-30T08:57:27,548   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/plot_corr.R to 755
2022-08-30T08:57:27,548   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/plot_FRiPs.R to 755
2022-08-30T08:57:27,549   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/diff_expr_DESeq2.R to 755
2022-08-30T08:57:27,549   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/plot_venn.R to 755
2022-08-30T08:57:27,550   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/plot_rep_cor.R to 755
2022-08-30T08:57:27,550   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/plot_hist.R to 755
2022-08-30T08:57:27,551   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/peak_anno.R to 755
2022-08-30T08:57:27,551   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/get_chrom_length.sh to 755
2022-08-30T08:57:27,552   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/fasta_len.sh to 755
2022-08-30T08:57:27,552   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/remove_duplicates.sh to 755
2022-08-30T08:57:27,553   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/plot_deeptools_fragmentsize.R to 755
2022-08-30T08:57:27,553   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/diff_expr_plot.R to 755
2022-08-30T08:57:27,554   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/plot_peak_width.R to 755
2022-08-30T08:57:27,554   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/fastq_len.sh to 755
2022-08-30T08:57:27,554   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.data/scripts/gtfparser.sh to 755
2022-08-30T08:57:27,659   adding license file "LICENSE.txt" (matched pattern "LICENSE.txt")
2022-08-30T08:57:27,709   creating build/bdist.linux-armv7l/wheel/pybiotk-1.0.7.dist-info/WHEEL
2022-08-30T08:57:27,715   creating '/tmp/pip-wheel-5chx570c/tmprucrte_x/pybiotk-1.0.7-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-08-30T08:57:27,719   adding 'pybiotk/__init__.py'
2022-08-30T08:57:27,722   adding 'pybiotk/annodb/__init__.py'
2022-08-30T08:57:27,725   adding 'pybiotk/annodb/anno.py'
2022-08-30T08:57:27,729   adding 'pybiotk/annodb/gene.py'
2022-08-30T08:57:27,732   adding 'pybiotk/annodb/merged_transcript.py'
2022-08-30T08:57:27,736   adding 'pybiotk/annodb/transcript.py'
2022-08-30T08:57:27,966   adding 'pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so'
2022-08-30T08:57:28,059   adding 'pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so'
2022-08-30T08:57:28,383   adding 'pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so'
2022-08-30T08:57:28,400   adding 'pybiotk/convert/__init__.py'
2022-08-30T08:57:28,402   adding 'pybiotk/convert/bam2fastx.py'
2022-08-30T08:57:28,405   adding 'pybiotk/convert/bampe_order_by_name.py'
2022-08-30T08:57:28,407   adding 'pybiotk/convert/bed2bedgraph.py'
2022-08-30T08:57:28,410   adding 'pybiotk/convert/fq2fasta.py'
2022-08-30T08:57:28,413   adding 'pybiotk/convert/gtf2bed.py'
2022-08-30T08:57:28,416   adding 'pybiotk/data/__init__.py'
2022-08-30T08:57:28,422   adding 'pybiotk/data/hg38.chrom.sizes'
2022-08-30T08:57:28,425   adding 'pybiotk/data/mm10.chrom.sizes'
2022-08-30T08:57:28,428   adding 'pybiotk/intervals/__init__.py'
2022-08-30T08:57:28,431   adding 'pybiotk/intervals/grange.py'
2022-08-30T08:57:28,434   adding 'pybiotk/intervals/merge_bed3.py'
2022-08-30T08:57:28,436   adding 'pybiotk/intervals/merge_intervals.py'
2022-08-30T08:57:28,440   adding 'pybiotk/io/__init__.py'
2022-08-30T08:57:28,443   adding 'pybiotk/io/bam.py'
2022-08-30T08:57:28,447   adding 'pybiotk/io/bed.py'
2022-08-30T08:57:28,450   adding 'pybiotk/io/bw.py'
2022-08-30T08:57:28,453   adding 'pybiotk/io/fasta.py'
2022-08-30T08:57:28,456   adding 'pybiotk/io/fastq.py'
2022-08-30T08:57:28,460   adding 'pybiotk/io/gtf.py'
2022-08-30T08:57:28,464   adding 'pybiotk/utils/__init__.py'
2022-08-30T08:57:28,467   adding 'pybiotk/utils/bam_random.py'
2022-08-30T08:57:28,469   adding 'pybiotk/utils/fasta_filter.py'
2022-08-30T08:57:28,472   adding 'pybiotk/utils/fastq_join.py'
2022-08-30T08:57:28,475   adding 'pybiotk/utils/fastq_uniq.py'
2022-08-30T08:57:28,478   adding 'pybiotk/utils/fastx_rename.py'
2022-08-30T08:57:28,481   adding 'pybiotk/utils/fragment_size.py'
2022-08-30T08:57:28,484   adding 'pybiotk/utils/gtf_filter.py'
2022-08-30T08:57:28,487   adding 'pybiotk/utils/merge_row.py'
2022-08-30T08:57:28,489   adding 'pybiotk/utils/merge_subseq.py'
2022-08-30T08:57:28,492   adding 'pybiotk/utils/normalize.py'
2022-08-30T08:57:28,496   adding 'pybiotk/utils/pyanno.py'
2022-08-30T08:57:28,499   adding 'pybiotk/utils/read_tables.py'
2022-08-30T08:57:28,502   adding 'pybiotk/utils/reference_count.py'
2022-08-30T08:57:28,504   adding 'pybiotk/utils/reverse_fastx.py'
2022-08-30T08:57:28,507   adding 'pybiotk/utils/rmats_filter.py'
2022-08-30T08:57:28,510   adding 'pybiotk/utils/seq_random.py'
2022-08-30T08:57:28,512   adding 'pybiotk/utils/subseq_analysis.py'
2022-08-30T08:57:28,516   adding 'pybiotk/utils/summary_log.py'
2022-08-30T08:57:28,520   adding 'pybiotk/utils/utils.py'
2022-08-30T08:57:28,525   adding 'pybiotk-1.0.7.data/scripts/diff_expr_DESeq2.R'
2022-08-30T08:57:28,529   adding 'pybiotk-1.0.7.data/scripts/diff_expr_edgeR.R'
2022-08-30T08:57:28,532   adding 'pybiotk-1.0.7.data/scripts/diff_expr_plot.R'
2022-08-30T08:57:28,535   adding 'pybiotk-1.0.7.data/scripts/fasta_len.sh'
2022-08-30T08:57:28,537   adding 'pybiotk-1.0.7.data/scripts/fasta_u2t.sh'
2022-08-30T08:57:28,540   adding 'pybiotk-1.0.7.data/scripts/fastq_len.sh'
2022-08-30T08:57:28,542   adding 'pybiotk-1.0.7.data/scripts/get_chrom_length.sh'
2022-08-30T08:57:28,544   adding 'pybiotk-1.0.7.data/scripts/gtfparser.sh'
2022-08-30T08:57:28,547   adding 'pybiotk-1.0.7.data/scripts/merge_subseq.sh'
2022-08-30T08:57:28,550   adding 'pybiotk-1.0.7.data/scripts/peak_anno.R'
2022-08-30T08:57:28,552   adding 'pybiotk-1.0.7.data/scripts/plot_FRiPs.R'
2022-08-30T08:57:28,555   adding 'pybiotk-1.0.7.data/scripts/plot_bar.R'
2022-08-30T08:57:28,558   adding 'pybiotk-1.0.7.data/scripts/plot_corr.R'
2022-08-30T08:57:28,561   adding 'pybiotk-1.0.7.data/scripts/plot_deeptools_fragmentsize.R'
2022-08-30T08:57:28,563   adding 'pybiotk-1.0.7.data/scripts/plot_hist.R'
2022-08-30T08:57:28,566   adding 'pybiotk-1.0.7.data/scripts/plot_peak_width.R'
2022-08-30T08:57:28,569   adding 'pybiotk-1.0.7.data/scripts/plot_rep_cor.R'
2022-08-30T08:57:28,572   adding 'pybiotk-1.0.7.data/scripts/plot_summary.R'
2022-08-30T08:57:28,575   adding 'pybiotk-1.0.7.data/scripts/plot_venn.R'
2022-08-30T08:57:28,577   adding 'pybiotk-1.0.7.data/scripts/remove_duplicates.sh'
2022-08-30T08:57:28,584   adding 'stream/__init__.py'
2022-08-30T08:57:28,588   adding 'stream/pipe.py'
2022-08-30T08:57:28,591   adding 'stream/stream.py'
2022-08-30T08:57:28,594   adding 'pybiotk-1.0.7.dist-info/LICENSE.txt'
2022-08-30T08:57:28,596   adding 'pybiotk-1.0.7.dist-info/METADATA'
2022-08-30T08:57:28,598   adding 'pybiotk-1.0.7.dist-info/WHEEL'
2022-08-30T08:57:28,601   adding 'pybiotk-1.0.7.dist-info/entry_points.txt'
2022-08-30T08:57:28,602   adding 'pybiotk-1.0.7.dist-info/top_level.txt'
2022-08-30T08:57:28,606   adding 'pybiotk-1.0.7.dist-info/RECORD'
2022-08-30T08:57:28,639   removing build/bdist.linux-armv7l/wheel
2022-08-30T08:57:29,042   Building wheel for pybiotk (pyproject.toml): finished with status 'done'
2022-08-30T08:57:29,083   Created wheel for pybiotk: filename=pybiotk-1.0.7-cp39-cp39-linux_armv7l.whl size=554054 sha256=58efd8944f51edd73913001082ed31919eaa2a61cd84bab7f9b3d6dc4bb5147c
2022-08-30T08:57:29,085   Stored in directory: /tmp/pip-ephem-wheel-cache-599pxpby/wheels/02/ed/45/42c3059a5152e205370ef463094840012e612e3e39afe17513
2022-08-30T08:57:29,114 Successfully built pybiotk
2022-08-30T08:57:29,159 Removed build tracker: '/tmp/pip-build-tracker-c0anff9y'