2022-08-30T21:10:04,012 Created temporary directory: /tmp/pip-ephem-wheel-cache-7dl6xacq
2022-08-30T21:10:04,017 Created temporary directory: /tmp/pip-build-tracker-1we33zwo
2022-08-30T21:10:04,018 Initialized build tracking at /tmp/pip-build-tracker-1we33zwo
2022-08-30T21:10:04,018 Created build tracker: /tmp/pip-build-tracker-1we33zwo
2022-08-30T21:10:04,019 Entered build tracker: /tmp/pip-build-tracker-1we33zwo
2022-08-30T21:10:04,020 Created temporary directory: /tmp/pip-wheel-6i0ugav5
2022-08-30T21:10:04,093 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-08-30T21:10:04,101 2 location(s) to search for versions of mdanalysis:
2022-08-30T21:10:04,101 * https://pypi.org/simple/mdanalysis/
2022-08-30T21:10:04,101 * https://www.piwheels.org/simple/mdanalysis/
2022-08-30T21:10:04,103 Fetching project page and analyzing links: https://pypi.org/simple/mdanalysis/
2022-08-30T21:10:04,104 Getting page https://pypi.org/simple/mdanalysis/
2022-08-30T21:10:04,107 Found index url https://pypi.org/simple
2022-08-30T21:10:04,256   Found link https://files.pythonhosted.org/packages/97/94/fd5a74e25fba58cfb514dc39ef4717baa392057503d6c38897f886b2c0c6/MDAnalysis-0.7.6.tar.gz#sha256=4225660533926ce808ae425f22edc643db296274ac3b95d9feae4eec0b38ff24 (from https://pypi.org/simple/mdanalysis/), version: 0.7.6
2022-08-30T21:10:04,257   Found link https://files.pythonhosted.org/packages/9d/32/36e44fd1b946331bd72c7cc8806dd2b37f597a49ac7ccfe2a64ad91e59f7/MDAnalysis-0.8.0rc2.tar.gz#sha256=5e14ea8593b80d93a75e4445965f79fb245a7b581ebc8389b9360b9145e88f32 (from https://pypi.org/simple/mdanalysis/), version: 0.8.0rc2
2022-08-30T21:10:04,258   Found link https://files.pythonhosted.org/packages/d9/c4/27ff9dcd35aeef52f41f01a6eff0328eda8a5fa6dfa8097daa9ff70dcdf8/MDAnalysis-0.8.0rc4.tar.gz#sha256=881af3c86c796995d3c48f803227ff9ae7c3f0b8f5b86e382ea0e24feda222c6 (from https://pypi.org/simple/mdanalysis/), version: 0.8.0rc4
2022-08-30T21:10:04,259   Found link https://files.pythonhosted.org/packages/35/04/425a87220983514ef06f87cd98f54db0a84eed5bec9dfd4b27b6799ae99e/MDAnalysis-0.8.0.tar.gz#sha256=8ef4eb5e71c749bdf9ee5c8d5f0d93200f0999c3306c31812bf1a164a60e728f (from https://pypi.org/simple/mdanalysis/), version: 0.8.0
2022-08-30T21:10:04,259   Found link https://files.pythonhosted.org/packages/7d/39/0afea6f9c2cb10259479800c3b8496c59ecdab8019d5c0cf868729db4c91/MDAnalysis-0.8.1rc1.tar.gz#sha256=8026cc164a14044d57eab6976af0629c522d41cb412233b4d0c0d42d54c90664 (from https://pypi.org/simple/mdanalysis/), version: 0.8.1rc1
2022-08-30T21:10:04,260   Found link https://files.pythonhosted.org/packages/9b/45/5cfc731f70af562c860d5b79329980b8b380dd8e283847c950c1f7af8d4c/MDAnalysis-0.8.1.tar.gz#sha256=115c640433ef64b8e85abdc13b2d8754ce328fc7b597707c921ad1f8f8e6e364 (from https://pypi.org/simple/mdanalysis/), version: 0.8.1
2022-08-30T21:10:04,261   Found link https://files.pythonhosted.org/packages/b5/f0/a3d1acd3fedafd4b56f3cc8f880acb7f7f0f1c68c46121b4c180975435bb/MDAnalysis-0.9.0-dev.tar.gz#sha256=bff57b3363da5b2b8000a2ac7af6a942704f8f76d26fdef68b402f6869e40dbd (from https://pypi.org/simple/mdanalysis/), version: 0.9.0-dev
2022-08-30T21:10:04,261   Found link https://files.pythonhosted.org/packages/3b/1a/3bd08be00e453a29b6bcbb3320bb91619539eef69ab5ddef46e4b477b34d/MDAnalysis-0.9.0.tar.gz#sha256=0a02b28f1cdbecd45f02a916f196b92289b0979451288bec8589b1694b81952b (from https://pypi.org/simple/mdanalysis/), version: 0.9.0
2022-08-30T21:10:04,262   Found link https://files.pythonhosted.org/packages/e5/28/dcafeb58175edede7e4393d5ccfeafc77c3ca8eac6dd2f14d3919e9d4c0c/MDAnalysis-0.9.1.tar.gz#sha256=c0cc40fc6d8326d227f02af5315b768cf20ed3348af8104d488b6327368b944b (from https://pypi.org/simple/mdanalysis/), version: 0.9.1
2022-08-30T21:10:04,263   Found link https://files.pythonhosted.org/packages/4e/59/72545bc442ee0f6a45cafbd3b0e99add0aca51cbbbe3a882cc930f993306/MDAnalysis-0.9.2.tar.gz#sha256=2632e77bd30f6a088d59b599bb16269bf5c6ad02559e45fb630a08190c611800 (from https://pypi.org/simple/mdanalysis/), version: 0.9.2
2022-08-30T21:10:04,263   Found link https://files.pythonhosted.org/packages/82/db/8d468530d1a4834031166fcd9fb754a13e3fd5cc65ee09970ec57c9948cb/MDAnalysis-0.10.0.tar.gz#sha256=f0d1b79c75208ad40621aa8f9d999edb5129362d27c942fea11e4f14c9f4af72 (from https://pypi.org/simple/mdanalysis/), version: 0.10.0
2022-08-30T21:10:04,264   Found link https://files.pythonhosted.org/packages/18/80/e6a5502a43f2ce2c432e08a9b404febc46fd403fb5e4b13ddc429f676fd7/MDAnalysis-0.11.0.tar.gz#sha256=4ceff8a3d8bfc32b42d6500d04a3f0c75e186d6811505b78eea3dacb5c368bb0 (from https://pypi.org/simple/mdanalysis/), version: 0.11.0
2022-08-30T21:10:04,265   Found link https://files.pythonhosted.org/packages/66/77/d666034a559dc75a0cc485345f3058b45b8b067a858adb009b6fae0bcefc/MDAnalysis-0.12.1.tar.gz#sha256=a7d0f28cbc2fa566af664057360c0d7466aba719342fdfccfe8c46380466a4b5 (from https://pypi.org/simple/mdanalysis/), version: 0.12.1
2022-08-30T21:10:04,266   Found link https://files.pythonhosted.org/packages/78/33/704a708797267b35bfe27cc40e83eedabad62c7bb143babbc728ee285082/MDAnalysis-0.13.0.tar.gz#sha256=bdf5a15842bd4e4635fcb60297978252c55c5828c9b7003d810c9e19a4fffbe6 (from https://pypi.org/simple/mdanalysis/), version: 0.13.0
2022-08-30T21:10:04,266   Found link https://files.pythonhosted.org/packages/11/4c/1b683b1448f14e73f8a45981e27689ca694d5f1106e0453145f8619ffc0c/MDAnalysis-0.14.0.tar.gz#sha256=3006cc0479b63e31ce6681f4db1f4e94f786aef2ec431670bc10f715c6dfec05 (from https://pypi.org/simple/mdanalysis/), version: 0.14.0
2022-08-30T21:10:04,267   Found link https://files.pythonhosted.org/packages/9f/56/a4cae14e45aa893a3578905a97e17a325d663e424736366adbc134e72dce/MDAnalysis-0.15.0.tar.gz#sha256=9088786048b47339cba1f8a586977bbb3bb04ae1bcd0462b59e45bda37e25533 (from https://pypi.org/simple/mdanalysis/), version: 0.15.0
2022-08-30T21:10:04,268   Found link https://files.pythonhosted.org/packages/55/bb/32c3dbd8e92b661a98839a50bd3185d29949afe4618fc1a846e42bad0ebf/MDAnalysis-0.16.0.tar.gz#sha256=c4824fa1fddd336daa39371436187ebb023366885fb250c2827ed7fce2546bd4 (from https://pypi.org/simple/mdanalysis/), version: 0.16.0
2022-08-30T21:10:04,269   Found link https://files.pythonhosted.org/packages/5f/68/7e7ce717700411e25821100a3bc3d31866ef7abee7e282736f9e0635fef7/MDAnalysis-0.16.1.tar.gz#sha256=3dc8f5d639ab3a0d152cbd7259ae9372ec8a9bac0f8cb7d3b80ce5adc1e3ee57 (from https://pypi.org/simple/mdanalysis/), version: 0.16.1
2022-08-30T21:10:04,269   Found link https://files.pythonhosted.org/packages/ae/d5/07c38db64a6bd9bcec03caea8e07137bb2e571ce2bd145f9804727dfc2a5/MDAnalysis-0.16.2.tar.gz#sha256=407d9a9ff1ab8a5e47973714d06fabff220f8d08a28792dee93e88e70e995b0a (from https://pypi.org/simple/mdanalysis/), version: 0.16.2
2022-08-30T21:10:04,270   Found link https://files.pythonhosted.org/packages/91/e0/b12ee57016dffcf8da1f5651745ab981a09bc9e51519b6fa752a1a9a6d0f/MDAnalysis-0.17.0.tar.gz#sha256=9bd61760334698cc7b8a57ad26456451e926e9c9e66722594ad8816561348cde (from https://pypi.org/simple/mdanalysis/), version: 0.17.0
2022-08-30T21:10:04,271   Found link https://files.pythonhosted.org/packages/17/44/e9aff78fc88f6b8ac56b7626f3c83ed3c53f723b3f756d4c211ebd5add74/MDAnalysis-0.18.0.tar.gz#sha256=a08acea1755112411e7db55e3f282e164b47a59e15794b38744cce6c596f252a (from https://pypi.org/simple/mdanalysis/), version: 0.18.0
2022-08-30T21:10:04,271   Found link https://files.pythonhosted.org/packages/6e/30/a2b4339369e252bf22dc8d1e732870bf88c33a73e4f5e73788c1a65b25a3/MDAnalysis-0.19.0.tar.gz#sha256=248e3b37fc6150e31c609cc18a3927c32aee37b76d29cbfedf635e7e1aa982cf (from https://pypi.org/simple/mdanalysis/), version: 0.19.0
2022-08-30T21:10:04,272   Found link https://files.pythonhosted.org/packages/1c/24/b03a9bf48a1703b1ec31c34585aab123ca73e7778155ac3d5301a564fde6/MDAnalysis-0.19.1.tar.gz#sha256=ff1d694f8598c0833ec340de6a6adb3b5e62b92d0fa94ee6401718ba972db3cc (from https://pypi.org/simple/mdanalysis/), version: 0.19.1
2022-08-30T21:10:04,273   Found link https://files.pythonhosted.org/packages/be/72/6c2f9fcd842c9a50315ac93c4079b3f70735c6125fe903d04fb68a6e616a/MDAnalysis-0.19.2.tar.gz#sha256=c5395bbafa5efca2e1aee4715d26129844140c47cb8301da0293106cb969de7d (from https://pypi.org/simple/mdanalysis/), version: 0.19.2
2022-08-30T21:10:04,273   Found link https://files.pythonhosted.org/packages/b8/49/a0470dda3837aa4c42a7d2e69a4aaa1646ce2aeffe686f6887666f265b43/MDAnalysis-0.20.0.tar.gz#sha256=03938fc6c25bc16af7a2f5030118e6fb3d95b47a40ac70e887ba08048d87b33f (from https://pypi.org/simple/mdanalysis/), version: 0.20.0
2022-08-30T21:10:04,274   Found link https://files.pythonhosted.org/packages/83/4b/97c2df212f1eee47144648aa0e0da1a9022eab74d3fc1fbaf2767734de3d/MDAnalysis-0.20.1.tar.gz#sha256=d04b71b193b9716d2597ffb9938b93f43487fa535da1bb5c1f2baccf356d7df9 (from https://pypi.org/simple/mdanalysis/), version: 0.20.1
2022-08-30T21:10:04,275   Found link https://files.pythonhosted.org/packages/c9/ae/11905971cc6cdb436bff040270f58fb3fc54ef77aea2ce2dfc269129f74e/MDAnalysis-1.0.0.tar.gz#sha256=f45a024aca45e390ff1c45ca90beb2180b78881be377e2a1aa9cd6c109bcfa81 (from https://pypi.org/simple/mdanalysis/), version: 1.0.0
2022-08-30T21:10:04,277   Link requires a different Python (3.9.2 not in: '>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9'): https://files.pythonhosted.org/packages/9e/19/1d32ded1891605facf6faf6e0de4ff6bd33db3f7983d84cfc10074363990/MDAnalysis-1.0.1.tar.gz#sha256=dc2cf34391b5eb1733fca1ab14e0de2e381d2d595c95923403f42cb2e39c9dad (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2022-08-30T21:10:04,278   Skipping link: 1.0.1 Requires-Python >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9: https://files.pythonhosted.org/packages/9e/19/1d32ded1891605facf6faf6e0de4ff6bd33db3f7983d84cfc10074363990/MDAnalysis-1.0.1.tar.gz#sha256=dc2cf34391b5eb1733fca1ab14e0de2e381d2d595c95923403f42cb2e39c9dad (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2022-08-30T21:10:04,280   Link requires a different Python (3.9.2 not in: '>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9'): https://files.pythonhosted.org/packages/0f/5a/3f34615abbe7c7758847636167d0caad7bb428c3950da64e7a3003b2c6fc/MDAnalysis-1.1.0.tar.gz#sha256=17cafb982e4380d62c6e2ba951c7717e9393b4c7b6200b6632763100ea2b0839 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2022-08-30T21:10:04,280   Skipping link: 1.1.0 Requires-Python >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9: https://files.pythonhosted.org/packages/0f/5a/3f34615abbe7c7758847636167d0caad7bb428c3950da64e7a3003b2c6fc/MDAnalysis-1.1.0.tar.gz#sha256=17cafb982e4380d62c6e2ba951c7717e9393b4c7b6200b6632763100ea2b0839 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2022-08-30T21:10:04,282   Link requires a different Python (3.9.2 not in: '>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9'): https://files.pythonhosted.org/packages/43/64/5fc4d327f242130f983b9a1ded4a406191385370dbc55a7be99f8ead126d/MDAnalysis-1.1.1.tar.gz#sha256=edfd5a8ac6cbaa8d02f505ac3e68d5a1866644a2d392a8f20e279c43e0886253 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2022-08-30T21:10:04,283   Skipping link: 1.1.1 Requires-Python >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9: https://files.pythonhosted.org/packages/43/64/5fc4d327f242130f983b9a1ded4a406191385370dbc55a7be99f8ead126d/MDAnalysis-1.1.1.tar.gz#sha256=edfd5a8ac6cbaa8d02f505ac3e68d5a1866644a2d392a8f20e279c43e0886253 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2022-08-30T21:10:04,283   Found link https://files.pythonhosted.org/packages/55/d1/9e302a51bdf6b3d0b7045c20b42203ad8ad20bf2103e8c19db2da868c6e7/MDAnalysis-2.0.0b0.tar.gz#sha256=09e0b855bddca9c386d3d674e3baf684ebcbb1668348844372232dc2b9a4ea4e (from https://pypi.org/simple/mdanalysis/), version: 2.0.0b0
2022-08-30T21:10:04,285   Found link https://files.pythonhosted.org/packages/bf/a2/5371b04ff9009b7c33e2e211bd622f961d30ccc47cb45b579f314572dfee/MDAnalysis-2.0.0.tar.gz#sha256=aa3079d1a82305eba58cf567fac8fc231940184ed88f9a4451be8433f4a06d3e (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.6), version: 2.0.0
2022-08-30T21:10:04,286   Found link https://files.pythonhosted.org/packages/fd/5a/ff83875f292645f916cc3df339ce45b9f23a06183da51638efb6c593d2e6/MDAnalysis-2.1.0.tar.gz#sha256=6f94715e031a818220bc927f5535bf139dd659aab66cb248775c2d14c7ab6822 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.7), version: 2.1.0
2022-08-30T21:10:04,287   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/da/e6/70ff5c7854cde5b6506cfd017f1b8271cb58f1d23f0d2e92b2119a5a2ab8/MDAnalysis-2.2.0-cp310-cp310-macosx_10_9_x86_64.whl#sha256=4bbcafba36b69c45fedd30ce7a2d1e1281c2fecd9885244680f035b1e1b22d22 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,288   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/dd/91/227cddc28727e6d5ba1671f46657c9affe449d4259f9e598af74d1e878ae/MDAnalysis-2.2.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=53ad2c9b61fb4108ad5608c2f2858c821b60d467d2df8752e12b7aed6f1a53dc (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,288   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8d/1d/e7355508ddd8254f4d67cae78675b48cf1fb0d91480b1ef6f836afb8d7fa/MDAnalysis-2.2.0-cp310-cp310-win_amd64.whl#sha256=ab6425af23ddf4299e0539fde098dc27baa79c11c88519d90135fb5547c107b5 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,289   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bb/d7/e97e9ddf0dbc048765a02f2d16d09f62814ff12ab26d78ca00ee5ca5e21f/MDAnalysis-2.2.0-cp38-cp38-macosx_10_9_x86_64.whl#sha256=cd43dc679ad2c41a9b7d4b0674ce9a319408e66106c1b2e60158f03dacd689f0 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,289   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f3/07/a888f3fe052fb83ef68491a4f9e818bcf37e499492a206a3bd8e74f713bc/MDAnalysis-2.2.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=ea58882acd14d1310b0a499d48256e2dbdaca5f160b56ddeebc1e81b9fbc4c18 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,290   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bc/c2/e8ba8d35609854287ec30cdb80a79e8de33f1cd88fd05efd40bdb705b142/MDAnalysis-2.2.0-cp38-cp38-win_amd64.whl#sha256=581ce428639f04a1d46a651be4c33139912714ed57c293b004de9e2fffe7d98b (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,290   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/17/0f/c96e22c0487dc4758d6cb895c0707c12e359b9e48d5022f7316df42f8c84/MDAnalysis-2.2.0-cp39-cp39-macosx_10_9_x86_64.whl#sha256=e1131feec575805932f36443d48375029faef60b60ba0680a86e43b3cdfa5ecb (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,291   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/50/d9/af23d161bc9c50678f955d802b8cb1ab624e715ed7d86e8e14f86e4b8f80/MDAnalysis-2.2.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=65039b454f310055f7bc2412fd49a5d25535f81ce87a7bdb0f91dfa7872d4bf9 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,291   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/83/5c/464d58a27ce0e2b0f010b1c65d0b4149256a7c470f5076beee1928e5e9a9/MDAnalysis-2.2.0-cp39-cp39-win_amd64.whl#sha256=0d067a4fee8efe602b95809c21b69de1509da15dfee9e5de714fa139ce1a9157 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,293   Found link https://files.pythonhosted.org/packages/5b/73/a077ff42d0cd88c5d3d6320fb156811cf67b28b5ea09a3c800e31af84b9b/MDAnalysis-2.2.0.tar.gz#sha256=bf9c9b7a03404e65aad66215d4c2ff8834ab747551eeaee059ff3e599a99d322 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.2.0
2022-08-30T21:10:04,293   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8b/2f/b256ebf5f841f7db75f882fcd40a4260fe5b0f58a005ec80b5b6a06d00eb/MDAnalysis-2.3.0-cp310-cp310-macosx_10_9_x86_64.whl#sha256=1d69837deeab63c789ecb1d4f31e13a6169f2f120506a6164ba03654c40a4214 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,294   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bd/3f/a2671e82dd0cce8ba6989ab7a2ca7b41caf030c060826e51f755db342ba7/MDAnalysis-2.3.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=ff37ef26e43f83fe6a5265bc43d6f097cea7ef9611dba7f3cead54788e27bfe4 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,294   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/49/ee/ec90cb066842d53783b8ee5b64ff6e53516072c248e175959d0a8fc7bf22/MDAnalysis-2.3.0-cp310-cp310-win_amd64.whl#sha256=e894c483deae6decb1c0a028c5bf03775ecd78637ad646aa3cf6638cceb1bec3 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,295   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/34/53/4b049681653aff30fa7f071a2aef6a842efe5c1f17d5852c0650517779c9/MDAnalysis-2.3.0-cp38-cp38-macosx_10_9_x86_64.whl#sha256=b5b1577f475fe5cb30edb720b17f3badd58d74b7d2ab163907a11dc35e937126 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,295   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/92/13/6e132a997503ecc40413196317a6bd8698ba503a7fc0af766af94b441da7/MDAnalysis-2.3.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=85f95b677e64fb5edcb4c5d2be60fd2fe4f6d4476a2454549d2e31d5589eb6a3 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,296   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/87/89/cf077bb830fecea88bafb1496dce463292195e957560f50853010ff30337/MDAnalysis-2.3.0-cp38-cp38-win_amd64.whl#sha256=c2780da75422a394d20487c397b49173eb6d6164446179ae7a991f9fa89a0343 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,296   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f1/13/f2f10cb68c696fe39700c6efc44ac3d4e3e0700dcf53e38057f4a659183b/MDAnalysis-2.3.0-cp39-cp39-macosx_10_9_x86_64.whl#sha256=efebe374da4ae6f4e03cf5d21c7dcb547de7fe28a42bca6c79790b0f699f83dd (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,297   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/df/01/07823d486611f6ab2a71b6a378554e95b4e804eb59f00f196db0f54a014d/MDAnalysis-2.3.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=91ffb12439eada3f9f0f6a8a5fe5e2761dc9faecae6634386a72fa2832c54929 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,298   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f3/12/1ca45a5c081c74219a3de9d0886a164cbcd22205f628eb7c9dd6cf2b83e8/MDAnalysis-2.3.0-cp39-cp39-win_amd64.whl#sha256=4c478a5b0297d746741c6ba7de65f8d2b290eec05998b3bf15684b3d0d51b481 (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,299   Found link https://files.pythonhosted.org/packages/30/c2/f2508b8e57e164eacb29af064eb633861515fdb26b641fb13da24dd56c13/MDAnalysis-2.3.0.tar.gz#sha256=29579433c4ea87048278dc1d4019b52e6a19504162659447be7c79fbdbf508ff (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.3.0
2022-08-30T21:10:04,300 Fetching project page and analyzing links: https://www.piwheels.org/simple/mdanalysis/
2022-08-30T21:10:04,300 Getting page https://www.piwheels.org/simple/mdanalysis/
2022-08-30T21:10:04,303 Found index url https://www.piwheels.org/simple
2022-08-30T21:10:04,587   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.2.0-cp39-cp39-linux_armv7l.whl#sha256=4d852c41177612532ba7f7ec2627465cdaa02e4f2d480c72586209ed68e9827f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,588   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.2.0-cp39-cp39-linux_armv6l.whl#sha256=4d852c41177612532ba7f7ec2627465cdaa02e4f2d480c72586209ed68e9827f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2022-08-30T21:10:04,588   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp39-cp39-linux_armv7l.whl#sha256=d9556ba8add30ef268b271c12910975221cca955af752f664094b594c5290f82 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2022-08-30T21:10:04,589   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp39-cp39-linux_armv6l.whl#sha256=d9556ba8add30ef268b271c12910975221cca955af752f664094b594c5290f82 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2022-08-30T21:10:04,589   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp37-cp37m-linux_armv7l.whl#sha256=15211cf0c7bf4819d9c48762d3c10d7541b273818dfe16cade585528469acb6e (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2022-08-30T21:10:04,590   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp37-cp37m-linux_armv6l.whl#sha256=15211cf0c7bf4819d9c48762d3c10d7541b273818dfe16cade585528469acb6e (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2022-08-30T21:10:04,590   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=565f74ce6e9dd72729736ca534c18c243dfa384a984c24dd759f1a263cd3c98c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2022-08-30T21:10:04,591   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=565f74ce6e9dd72729736ca534c18c243dfa384a984c24dd759f1a263cd3c98c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2022-08-30T21:10:04,591   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=87407fa5dde4f05cd7b764dacc7ed05d672fdc5965332ce5d91d62d081ccbfc7 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2022-08-30T21:10:04,592   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=87407fa5dde4f05cd7b764dacc7ed05d672fdc5965332ce5d91d62d081ccbfc7 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2022-08-30T21:10:04,592   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp39-cp39-linux_armv7l.whl#sha256=6faa74b3b1a64cdd53a1313f3ecf13a260e99df077e63a45b273edd2b5afc680 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,593   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp39-cp39-linux_armv6l.whl#sha256=6faa74b3b1a64cdd53a1313f3ecf13a260e99df077e63a45b273edd2b5afc680 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,593   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp37-cp37m-linux_armv7l.whl#sha256=331239f905d05b614d662e8a60615f80c2611d8f6ea8f3e256a0cbcefdf53191 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,594   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp37-cp37m-linux_armv6l.whl#sha256=331239f905d05b614d662e8a60615f80c2611d8f6ea8f3e256a0cbcefdf53191 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,594   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=636760cd892a8524f5912fafc58d29ffcce61acbd8730c7c69a3e922a164476f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2022-08-30T21:10:04,595   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=636760cd892a8524f5912fafc58d29ffcce61acbd8730c7c69a3e922a164476f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2022-08-30T21:10:04,595   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.0-cp37-cp37m-linux_armv7l.whl#sha256=9693d11a44eeb74415f6614dca0791bfe7f0cf24552a0ed3d17c133ff5b361ef (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2022-08-30T21:10:04,596   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.0-cp37-cp37m-linux_armv6l.whl#sha256=9693d11a44eeb74415f6614dca0791bfe7f0cf24552a0ed3d17c133ff5b361ef (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2022-08-30T21:10:04,596   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=1214ca3490e50243b48350c6c6a2c89b77cce8f1cd72f6d2549860b3db1ad84c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2022-08-30T21:10:04,597   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=1214ca3490e50243b48350c6c6a2c89b77cce8f1cd72f6d2549860b3db1ad84c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2022-08-30T21:10:04,598   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=e43dbbd4ecd06fb475d80e5dae571708415e1287e6dd2c669c98095e13ea2ae8 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,598   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=e43dbbd4ecd06fb475d80e5dae571708415e1287e6dd2c669c98095e13ea2ae8 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,599   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=1368159b6134befa021a6536dcc02e047dc27b4c4672ae7f3b2f8e1559b43f8e (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,599   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=1368159b6134befa021a6536dcc02e047dc27b4c4672ae7f3b2f8e1559b43f8e (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,600   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp35-cp35m-linux_armv6l.whl#sha256=b669220c967a8cc746ae35c931d22da666f540595d1e9a9c3bb620effa9205b3 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,600   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp35-cp35m-linux_armv7l.whl#sha256=b669220c967a8cc746ae35c931d22da666f540595d1e9a9c3bb620effa9205b3 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,601   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp34-cp34m-linux_armv7l.whl#sha256=73adf04061df9ef3a9987e05113ccef5654aba2f3d2a3fe680ad590a76b2cd4c (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,601   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp34-cp34m-linux_armv6l.whl#sha256=73adf04061df9ef3a9987e05113ccef5654aba2f3d2a3fe680ad590a76b2cd4c (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,602   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp39-cp39-linux_armv7l.whl#sha256=89f6feff5fc44ebffd65aa746c268db44a975620306dfebc09a8e7b8e9d5e4da (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,602   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp39-cp39-linux_armv6l.whl#sha256=89f6feff5fc44ebffd65aa746c268db44a975620306dfebc09a8e7b8e9d5e4da (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,603   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp35-cp35m-linux_armv7l.whl#sha256=dafe9f34f8fc19527a5e2ebbe3080bfa1e89a5ceb160e8a52bf3ca2a9dce6442 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,603   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp35-cp35m-linux_armv6l.whl#sha256=dafe9f34f8fc19527a5e2ebbe3080bfa1e89a5ceb160e8a52bf3ca2a9dce6442 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,604   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp37-cp37m-linux_armv6l.whl#sha256=51964d1254a62b7b673ddfa8ce4eb6616d3b13f1ea26702fc5ba1ea0a2d30696 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,604   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp37-cp37m-linux_armv7l.whl#sha256=51964d1254a62b7b673ddfa8ce4eb6616d3b13f1ea26702fc5ba1ea0a2d30696 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,604   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp39-cp39-linux_armv7l.whl#sha256=71f4f4953090bbbbafab4e8e5f1af9286acd1dbe6863f95771e62ca51d6772be (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,605   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp39-cp39-linux_armv6l.whl#sha256=71f4f4953090bbbbafab4e8e5f1af9286acd1dbe6863f95771e62ca51d6772be (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,605   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp37-cp37m-linux_armv7l.whl#sha256=9b6fa10f5b5f2473db79f5704fbfc697f53d7c356f152ba8d80c761e63acbed7 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,606   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp37-cp37m-linux_armv6l.whl#sha256=9b6fa10f5b5f2473db79f5704fbfc697f53d7c356f152ba8d80c761e63acbed7 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,606   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp35-cp35m-linux_armv6l.whl#sha256=0f4e4569bec6b9d3d93de52938352429f2e85e568b7f35bd3a69f0a111ded689 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,607   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp35-cp35m-linux_armv7l.whl#sha256=0f4e4569bec6b9d3d93de52938352429f2e85e568b7f35bd3a69f0a111ded689 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,607   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp35-cp35m-linux_armv6l.whl#sha256=eb34e69945631c173f5b4ad0378dcf44bf0760fc8f90c68501d757ed9b6203f3 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,608   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp35-cp35m-linux_armv7l.whl#sha256=eb34e69945631c173f5b4ad0378dcf44bf0760fc8f90c68501d757ed9b6203f3 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,608   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp37-cp37m-linux_armv7l.whl#sha256=10a68d03d53e547d0cd2b7be40ec9af8591482bb43aeb5aad582f8a4926205b1 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,609   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp37-cp37m-linux_armv6l.whl#sha256=10a68d03d53e547d0cd2b7be40ec9af8591482bb43aeb5aad582f8a4926205b1 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,609   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp35-cp35m-linux_armv7l.whl#sha256=813d426b8a410f1c2297d31517407d5684acd025090423a79196237743514a41 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,610   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp35-cp35m-linux_armv6l.whl#sha256=813d426b8a410f1c2297d31517407d5684acd025090423a79196237743514a41 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,610   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp34-cp34m-linux_armv6l.whl#sha256=20c2668ada02b91f1fde53c86ba8f14bcf3690458546f09a9fe1694ce814ad54 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,611   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp34-cp34m-linux_armv7l.whl#sha256=20c2668ada02b91f1fde53c86ba8f14bcf3690458546f09a9fe1694ce814ad54 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,611   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp37-cp37m-linux_armv6l.whl#sha256=82dd02ba237b4261c0f0d1f180ee08cda6cd1c25871e12db138518ab9f8ca8a6 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,612   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp37-cp37m-linux_armv7l.whl#sha256=82dd02ba237b4261c0f0d1f180ee08cda6cd1c25871e12db138518ab9f8ca8a6 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,612   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp34-cp34m-linux_armv7l.whl#sha256=2182ab1095b6fb7758816fb8041d325e39216149dd9cc19f98b2394392a14f1b (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,613   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp34-cp34m-linux_armv6l.whl#sha256=2182ab1095b6fb7758816fb8041d325e39216149dd9cc19f98b2394392a14f1b (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,613   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp35-cp35m-linux_armv6l.whl#sha256=426923348f9332d0762be3c94068ab6f54e143815453ae85d2a749e77e4226f7 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,614   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp35-cp35m-linux_armv7l.whl#sha256=426923348f9332d0762be3c94068ab6f54e143815453ae85d2a749e77e4226f7 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,614   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp37-cp37m-linux_armv7l.whl#sha256=12656c0ac065200b557f80654ef49efaf3e7605ed9abdb94875f64143616f41d (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,615   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp37-cp37m-linux_armv6l.whl#sha256=12656c0ac065200b557f80654ef49efaf3e7605ed9abdb94875f64143616f41d (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,615   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp34-cp34m-linux_armv7l.whl#sha256=9ed92944cd4b3322d05b9a4bb840fe590ed3be07609a93ffb09fe1f760ac363d (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,616   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp34-cp34m-linux_armv6l.whl#sha256=9ed92944cd4b3322d05b9a4bb840fe590ed3be07609a93ffb09fe1f760ac363d (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,616   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp35-cp35m-linux_armv7l.whl#sha256=66b3e7f35c28b424a6ad19307554c223ebc24916dddb557dbd08762989c32119 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,617   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp35-cp35m-linux_armv6l.whl#sha256=66b3e7f35c28b424a6ad19307554c223ebc24916dddb557dbd08762989c32119 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,617   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp37-cp37m-linux_armv6l.whl#sha256=07e291f5c3ee08d16b280c629411107ae1984f33458036e3418429e5f1a33092 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,618   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp37-cp37m-linux_armv7l.whl#sha256=07e291f5c3ee08d16b280c629411107ae1984f33458036e3418429e5f1a33092 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,618   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp37-cp37m-linux_armv7l.whl#sha256=bff2b2b18becae8ee1095f65c6e0d35f33fbc31544d3a12e9ab41bcdb6a775ce (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,619   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp37-cp37m-linux_armv6l.whl#sha256=bff2b2b18becae8ee1095f65c6e0d35f33fbc31544d3a12e9ab41bcdb6a775ce (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,619   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp34-cp34m-linux_armv6l.whl#sha256=ca0488c00e0be959cac05340ae1deb148c2769996e5abb346ad3a7487c2193d1 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,620   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp34-cp34m-linux_armv7l.whl#sha256=ca0488c00e0be959cac05340ae1deb148c2769996e5abb346ad3a7487c2193d1 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,620   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp35-cp35m-linux_armv6l.whl#sha256=58492c63068e648dfb1879b19f1fa55e6e3b9589ee9141eda53c4aed5a915136 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,621   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp35-cp35m-linux_armv7l.whl#sha256=58492c63068e648dfb1879b19f1fa55e6e3b9589ee9141eda53c4aed5a915136 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,621   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp35-cp35m-linux_armv6l.whl#sha256=28e395835220893e8a10d101072b742e6401a4376ddfacc41e30572d8aa6ed65 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,622   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp35-cp35m-linux_armv7l.whl#sha256=28e395835220893e8a10d101072b742e6401a4376ddfacc41e30572d8aa6ed65 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,622   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp34-cp34m-linux_armv6l.whl#sha256=e959b452e988fe4a9b8459143d6a64eef168bc3b9355a04b20ba20c4bb1bf601 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,623   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp34-cp34m-linux_armv7l.whl#sha256=e959b452e988fe4a9b8459143d6a64eef168bc3b9355a04b20ba20c4bb1bf601 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,623   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp34-cp34m-linux_armv6l.whl#sha256=985988f3d88079fe20f14ddee546fbb7b13e2a70dbeb4ac10c0f38f45afa7261 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,624   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp34-cp34m-linux_armv7l.whl#sha256=985988f3d88079fe20f14ddee546fbb7b13e2a70dbeb4ac10c0f38f45afa7261 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,624   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp35-cp35m-linux_armv7l.whl#sha256=933bf37f65e3ae59c832a6798365a3da99432510fcfc802e2d6eaa48db3a7261 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,625   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp35-cp35m-linux_armv6l.whl#sha256=933bf37f65e3ae59c832a6798365a3da99432510fcfc802e2d6eaa48db3a7261 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,625   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp34-cp34m-linux_armv6l.whl#sha256=34198e0f9e509df1779c2255812cee0f720dc8e989c7d4b7196337f75f1ef51b (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,626   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp34-cp34m-linux_armv7l.whl#sha256=34198e0f9e509df1779c2255812cee0f720dc8e989c7d4b7196337f75f1ef51b (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,626   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp35-cp35m-linux_armv7l.whl#sha256=032867bf17eecd5fd249607198ad5c191fac901f2856d5a485ffc53a8eb687d4 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,627   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp35-cp35m-linux_armv6l.whl#sha256=032867bf17eecd5fd249607198ad5c191fac901f2856d5a485ffc53a8eb687d4 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,627   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp35-cp35m-linux_armv7l.whl#sha256=04685acd7ab3d9f580c6dccdc18dfa33d89ea596521eede98bef2ec3f8f58af7 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,628   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp35-cp35m-linux_armv6l.whl#sha256=04685acd7ab3d9f580c6dccdc18dfa33d89ea596521eede98bef2ec3f8f58af7 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,628   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp34-cp34m-linux_armv6l.whl#sha256=30c2bb9cf26e969dbdc8978bd4710e9e8a42ee42ed7c9ad506c63a0855448307 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,629   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp34-cp34m-linux_armv7l.whl#sha256=30c2bb9cf26e969dbdc8978bd4710e9e8a42ee42ed7c9ad506c63a0855448307 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,629   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp34-cp34m-linux_armv6l.whl#sha256=527918d821e76043cda119ee29aa26b835f8f85251d560d47616e9147b5a1539 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,630   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp34-cp34m-linux_armv7l.whl#sha256=527918d821e76043cda119ee29aa26b835f8f85251d560d47616e9147b5a1539 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,630   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp35-cp35m-linux_armv6l.whl#sha256=b9d6e5734efb33b9383183904d491de8ef28aeeac7bbfdd617d48084126af113 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,631   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp35-cp35m-linux_armv7l.whl#sha256=b9d6e5734efb33b9383183904d491de8ef28aeeac7bbfdd617d48084126af113 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,631   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp39-cp39-linux_armv7l.whl#sha256=ef25ee9269f3b7f8ab95f1c3c563c39740fd2b7801df49d6be7e702c7db7f8fc (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,631   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp39-cp39-linux_armv6l.whl#sha256=ef25ee9269f3b7f8ab95f1c3c563c39740fd2b7801df49d6be7e702c7db7f8fc (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,632   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp35-cp35m-linux_armv7l.whl#sha256=46ca86446af4c56b5805a1cb36dd77ac64d009abb5500878ea4fa26320c7ba43 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,632   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp35-cp35m-linux_armv6l.whl#sha256=46ca86446af4c56b5805a1cb36dd77ac64d009abb5500878ea4fa26320c7ba43 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,633   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp34-cp34m-linux_armv6l.whl#sha256=89151b95fc0cd948f7a2d1d660b8c2453a612a752a2a2d7d8fb6d169ff2782d4 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,633   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp34-cp34m-linux_armv7l.whl#sha256=89151b95fc0cd948f7a2d1d660b8c2453a612a752a2a2d7d8fb6d169ff2782d4 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,634   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp37-cp37m-linux_armv7l.whl#sha256=a073eda71f157be82bd9b81ac12793e63834dde1ac9b63ca704668a88b025c1e (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,634   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp37-cp37m-linux_armv6l.whl#sha256=a073eda71f157be82bd9b81ac12793e63834dde1ac9b63ca704668a88b025c1e (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,635   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp35-cp35m-linux_armv7l.whl#sha256=47de147e5ee68a99b75107632aaa1e3bf84b4fa1f5bd7a456c1537266d437fbb (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,635   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp35-cp35m-linux_armv6l.whl#sha256=47de147e5ee68a99b75107632aaa1e3bf84b4fa1f5bd7a456c1537266d437fbb (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,636   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp34-cp34m-linux_armv6l.whl#sha256=a0ddeb70a574aee9a5c491f2da635dc26e5e5b2b4cac7d8abbbffb3c1b4c7a8a (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,636   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp34-cp34m-linux_armv7l.whl#sha256=a0ddeb70a574aee9a5c491f2da635dc26e5e5b2b4cac7d8abbbffb3c1b4c7a8a (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,637   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp35-cp35m-linux_armv6l.whl#sha256=28a9bbed8fd84f6ebdf4efb48ef9e2435715169ef7a558ad7f11a33232e83815 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,637   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp35-cp35m-linux_armv7l.whl#sha256=28a9bbed8fd84f6ebdf4efb48ef9e2435715169ef7a558ad7f11a33232e83815 (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,638   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp34-cp34m-linux_armv6l.whl#sha256=6d813f8dee5bde52fe344b851079bfaab34030f253869d7098ee33929566e36a (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,638   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp34-cp34m-linux_armv7l.whl#sha256=6d813f8dee5bde52fe344b851079bfaab34030f253869d7098ee33929566e36a (from https://www.piwheels.org/simple/mdanalysis/)
2022-08-30T21:10:04,639 Skipping link: not a file: https://www.piwheels.org/simple/mdanalysis/
2022-08-30T21:10:04,639 Skipping link: not a file: https://pypi.org/simple/mdanalysis/
2022-08-30T21:10:04,694 Given no hashes to check 1 links for project 'mdanalysis': discarding no candidates
2022-08-30T21:10:04,735 Collecting mdanalysis==2.3.0
2022-08-30T21:10:04,740   Created temporary directory: /tmp/pip-unpack-2_lgjazi
2022-08-30T21:10:05,321   Downloading MDAnalysis-2.3.0.tar.gz (3.7 MB)
2022-08-30T21:10:09,329   Added mdanalysis==2.3.0 from https://files.pythonhosted.org/packages/30/c2/f2508b8e57e164eacb29af064eb633861515fdb26b641fb13da24dd56c13/MDAnalysis-2.3.0.tar.gz#sha256=29579433c4ea87048278dc1d4019b52e6a19504162659447be7c79fbdbf508ff to build tracker '/tmp/pip-build-tracker-1we33zwo'
2022-08-30T21:10:09,408   Created temporary directory: /tmp/pip-build-env-dnktttp2
2022-08-30T21:10:09,430   Created temporary directory: /tmp/pip-standalone-pip-s_d3zseo
2022-08-30T21:10:11,732   Installing build dependencies: started
2022-08-30T21:10:11,735   Running command pip subprocess to install build dependencies
2022-08-30T21:10:22,923   Using pip 22.1.2 from /tmp/pip-standalone-pip-s_d3zseo/__env_pip__.zip/pip (python 3.9)
2022-08-30T21:10:24,668   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-08-30T21:10:24,672   Ignoring numpy: markers 'python_version == "3.8" and (platform_machine != "arm64" or platform_system != "Darwin")' don't match your environment
2022-08-30T21:10:24,675   Ignoring numpy: markers 'python_version == "3.8" and platform_machine == "arm64" and platform_system == "Darwin"' don't match your environment
2022-08-30T21:10:24,678   Ignoring numpy: markers 'python_version == "3.9" and platform_machine == "arm64" and platform_system == "Darwin"' don't match your environment
2022-08-30T21:10:24,680   Ignoring numpy: markers 'python_version == "3.10" and platform_python_implementation != "PyPy"' don't match your environment
2022-08-30T21:10:28,712   Collecting Cython>=0.28
2022-08-30T21:10:29,784     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB)
2022-08-30T21:10:30,647   Collecting packaging
2022-08-30T21:10:30,688     Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB)
2022-08-30T21:10:34,432   Collecting numpy==1.20.0
2022-08-30T21:10:36,707     Using cached https://www.piwheels.org/simple/numpy/numpy-1.20.0-cp39-cp39-linux_armv7l.whl (11.6 MB)
2022-08-30T21:10:41,519   Collecting setuptools
2022-08-30T21:10:41,796     Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.3.0-py3-none-any.whl (1.2 MB)
2022-08-30T21:10:42,465   Collecting wheel
2022-08-30T21:10:42,500     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-08-30T21:10:43,205   Collecting pyparsing!=3.0.5,>=2.0.2
2022-08-30T21:10:43,244     Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.9-py3-none-any.whl (98 kB)
2022-08-30T21:10:51,532   Installing collected packages: wheel, setuptools, pyparsing, numpy, Cython, packaging
2022-08-30T21:10:51,828     Creating /tmp/pip-build-env-dnktttp2/overlay/bin
2022-08-30T21:10:51,833     changing mode of /tmp/pip-build-env-dnktttp2/overlay/bin/wheel to 755
2022-08-30T21:11:14,176     changing mode of /tmp/pip-build-env-dnktttp2/overlay/bin/f2py to 755
2022-08-30T21:11:14,180     changing mode of /tmp/pip-build-env-dnktttp2/overlay/bin/f2py3 to 755
2022-08-30T21:11:14,185     changing mode of /tmp/pip-build-env-dnktttp2/overlay/bin/f2py3.9 to 755
2022-08-30T21:11:20,490     changing mode of /tmp/pip-build-env-dnktttp2/overlay/bin/cygdb to 755
2022-08-30T21:11:20,494     changing mode of /tmp/pip-build-env-dnktttp2/overlay/bin/cython to 755
2022-08-30T21:11:20,499     changing mode of /tmp/pip-build-env-dnktttp2/overlay/bin/cythonize to 755
2022-08-30T21:11:20,824   Successfully installed Cython-0.29.32 numpy-1.20.0 packaging-21.3 pyparsing-3.0.9 setuptools-65.3.0 wheel-0.37.1
2022-08-30T21:11:21,037   --- Logging error ---
2022-08-30T21:11:21,055   Traceback (most recent call last):
2022-08-30T21:11:21,056     File "/tmp/pip-standalone-pip-s_d3zseo/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit
2022-08-30T21:11:21,056       self.console.print(renderable, overflow="ignore", crop=False, style=style)
2022-08-30T21:11:21,057     File "/tmp/pip-standalone-pip-s_d3zseo/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print
2022-08-30T21:11:21,057       extend(render(renderable, render_options))
2022-08-30T21:11:21,058     File "/tmp/pip-standalone-pip-s_d3zseo/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render
2022-08-30T21:11:21,058       for render_output in iter_render:
2022-08-30T21:11:21,058     File "/tmp/pip-standalone-pip-s_d3zseo/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__
2022-08-30T21:11:21,059       for line in lines:
2022-08-30T21:11:21,059     File "/tmp/pip-standalone-pip-s_d3zseo/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines
2022-08-30T21:11:21,059       for segment in segments:
2022-08-30T21:11:21,060     File "/tmp/pip-standalone-pip-s_d3zseo/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render
2022-08-30T21:11:21,060       renderable = rich_cast(renderable)
2022-08-30T21:11:21,060     File "/tmp/pip-standalone-pip-s_d3zseo/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast
2022-08-30T21:11:21,061       renderable = cast_method()
2022-08-30T21:11:21,061     File "/tmp/pip-standalone-pip-s_d3zseo/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__
2022-08-30T21:11:21,061       pip_cmd = get_best_invocation_for_this_pip()
2022-08-30T21:11:21,062     File "/tmp/pip-standalone-pip-s_d3zseo/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip
2022-08-30T21:11:21,062       if found_executable and os.path.samefile(
2022-08-30T21:11:21,062     File "/usr/lib/python3.9/genericpath.py", line 101, in samefile
2022-08-30T21:11:21,063       s2 = os.stat(f2)
2022-08-30T21:11:21,063   FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9'
2022-08-30T21:11:21,064   Call stack:
2022-08-30T21:11:21,067     File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main
2022-08-30T21:11:21,068       return _run_code(code, main_globals, None,
2022-08-30T21:11:21,068     File "/usr/lib/python3.9/runpy.py", line 87, in _run_code
2022-08-30T21:11:21,069       exec(code, run_globals)
2022-08-30T21:11:21,069     File "/tmp/pip-standalone-pip-s_d3zseo/__env_pip__.zip/pip/__main__.py", line 31, in <module>
2022-08-30T21:11:21,069       sys.exit(_main())
2022-08-30T21:11:21,070     File "/tmp/pip-standalone-pip-s_d3zseo/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main
2022-08-30T21:11:21,070       return command.main(cmd_args)
2022-08-30T21:11:21,070     File "/tmp/pip-standalone-pip-s_d3zseo/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main
2022-08-30T21:11:21,070       return self._main(args)
2022-08-30T21:11:21,071     File "/tmp/pip-standalone-pip-s_d3zseo/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main
2022-08-30T21:11:21,071       self.handle_pip_version_check(options)
2022-08-30T21:11:21,072     File "/tmp/pip-standalone-pip-s_d3zseo/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check
2022-08-30T21:11:21,072       pip_self_version_check(session, options)
2022-08-30T21:11:21,072     File "/tmp/pip-standalone-pip-s_d3zseo/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check
2022-08-30T21:11:21,073       logger.info("[present-rich] %s", upgrade_prompt)
2022-08-30T21:11:21,073     File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info
2022-08-30T21:11:21,073       self._log(INFO, msg, args, **kwargs)
2022-08-30T21:11:21,073     File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log
2022-08-30T21:11:21,074       self.handle(record)
2022-08-30T21:11:21,074     File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle
2022-08-30T21:11:21,074       self.callHandlers(record)
2022-08-30T21:11:21,075     File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers
2022-08-30T21:11:21,075       hdlr.handle(record)
2022-08-30T21:11:21,075     File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle
2022-08-30T21:11:21,075       self.emit(record)
2022-08-30T21:11:21,076     File "/tmp/pip-standalone-pip-s_d3zseo/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit
2022-08-30T21:11:21,076       self.handleError(record)
2022-08-30T21:11:21,076   Message: '[present-rich] %s'
2022-08-30T21:11:21,077   Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),)
2022-08-30T21:11:21,774   Installing build dependencies: finished with status 'done'
2022-08-30T21:11:21,827   Getting requirements to build wheel: started
2022-08-30T21:11:21,829   Running command Getting requirements to build wheel
2022-08-30T21:11:27,507   Attempting to autodetect OpenMP support... Compiler supports OpenMP
2022-08-30T21:11:27,509   Will attempt to use Cython.
2022-08-30T21:11:27,985   Getting requirements to build wheel: finished with status 'done'
2022-08-30T21:11:28,019   Created temporary directory: /tmp/pip-modern-metadata-_octp12f
2022-08-30T21:11:28,024   Preparing metadata (pyproject.toml): started
2022-08-30T21:11:28,026   Running command Preparing metadata (pyproject.toml)
2022-08-30T21:11:32,966   Attempting to autodetect OpenMP support... Compiler supports OpenMP
2022-08-30T21:11:32,968   Will attempt to use Cython.
2022-08-30T21:11:39,538   running dist_info
2022-08-30T21:11:40,151   creating /tmp/pip-modern-metadata-_octp12f/MDAnalysis.egg-info
2022-08-30T21:11:40,736   writing /tmp/pip-modern-metadata-_octp12f/MDAnalysis.egg-info/PKG-INFO
2022-08-30T21:11:41,292   writing dependency_links to /tmp/pip-modern-metadata-_octp12f/MDAnalysis.egg-info/dependency_links.txt
2022-08-30T21:11:44,057   writing requirements to /tmp/pip-modern-metadata-_octp12f/MDAnalysis.egg-info/requires.txt
2022-08-30T21:11:44,612   writing top-level names to /tmp/pip-modern-metadata-_octp12f/MDAnalysis.egg-info/top_level.txt
2022-08-30T21:11:44,615   writing manifest file '/tmp/pip-modern-metadata-_octp12f/MDAnalysis.egg-info/SOURCES.txt'
2022-08-30T21:11:45,962   reading manifest file '/tmp/pip-modern-metadata-_octp12f/MDAnalysis.egg-info/SOURCES.txt'
2022-08-30T21:11:45,966   reading manifest template 'MANIFEST.in'
2022-08-30T21:11:46,334   warning: no previously-included files matching 'doc/html/html' found anywhere in distribution
2022-08-30T21:11:46,338   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2022-08-30T21:11:46,342   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2022-08-30T21:11:46,345   warning: no previously-included files matching '*.pyd' found anywhere in distribution
2022-08-30T21:11:46,350   warning: no previously-included files matching '*~' found anywhere in distribution
2022-08-30T21:11:46,353   warning: no previously-included files matching '.git' found anywhere in distribution
2022-08-30T21:11:46,354   adding license file 'LICENSE'
2022-08-30T21:11:46,354   adding license file 'AUTHORS'
2022-08-30T21:11:46,395   writing manifest file '/tmp/pip-modern-metadata-_octp12f/MDAnalysis.egg-info/SOURCES.txt'
2022-08-30T21:11:46,400   creating '/tmp/pip-modern-metadata-_octp12f/MDAnalysis-2.3.0.dist-info'
2022-08-30T21:11:46,653   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-08-30T21:11:46,656   adding license file "AUTHORS" (matched pattern "AUTHORS*")
2022-08-30T21:11:47,026   Preparing metadata (pyproject.toml): finished with status 'done'
2022-08-30T21:11:47,042   Source in /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18 has version 2.3.0, which satisfies requirement mdanalysis==2.3.0 from https://files.pythonhosted.org/packages/30/c2/f2508b8e57e164eacb29af064eb633861515fdb26b641fb13da24dd56c13/MDAnalysis-2.3.0.tar.gz#sha256=29579433c4ea87048278dc1d4019b52e6a19504162659447be7c79fbdbf508ff
2022-08-30T21:11:47,044   Removed mdanalysis==2.3.0 from https://files.pythonhosted.org/packages/30/c2/f2508b8e57e164eacb29af064eb633861515fdb26b641fb13da24dd56c13/MDAnalysis-2.3.0.tar.gz#sha256=29579433c4ea87048278dc1d4019b52e6a19504162659447be7c79fbdbf508ff from build tracker '/tmp/pip-build-tracker-1we33zwo'
2022-08-30T21:11:47,059 Created temporary directory: /tmp/pip-unpack-16yfhejy
2022-08-30T21:11:47,060 Building wheels for collected packages: mdanalysis
2022-08-30T21:11:47,070   Created temporary directory: /tmp/pip-wheel-5nckrf9y
2022-08-30T21:11:47,070   Destination directory: /tmp/pip-wheel-5nckrf9y
2022-08-30T21:11:47,075   Building wheel for mdanalysis (pyproject.toml): started
2022-08-30T21:11:47,077   Running command Building wheel for mdanalysis (pyproject.toml)
2022-08-30T21:11:51,992   Attempting to autodetect OpenMP support... Compiler supports OpenMP
2022-08-30T21:11:51,993   Will attempt to use Cython.
2022-08-30T21:11:58,100   running bdist_wheel
2022-08-30T21:11:58,782   running build
2022-08-30T21:11:58,782   running build_py
2022-08-30T21:11:59,375   creating build
2022-08-30T21:11:59,375   creating build/lib.linux-armv7l-cpython-39
2022-08-30T21:11:59,376   creating build/lib.linux-armv7l-cpython-39/MDAnalysis
2022-08-30T21:11:59,379   copying MDAnalysis/due.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis
2022-08-30T21:11:59,382   copying MDAnalysis/units.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis
2022-08-30T21:11:59,387   copying MDAnalysis/authors.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis
2022-08-30T21:11:59,390   copying MDAnalysis/version.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis
2022-08-30T21:11:59,394   copying MDAnalysis/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis
2022-08-30T21:11:59,398   copying MDAnalysis/exceptions.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis
2022-08-30T21:11:59,403   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization
2022-08-30T21:11:59,404   copying MDAnalysis/visualization/streamlines.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization
2022-08-30T21:11:59,413   copying MDAnalysis/visualization/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization
2022-08-30T21:11:59,416   copying MDAnalysis/visualization/streamlines_3D.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization
2022-08-30T21:11:59,424   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2022-08-30T21:11:59,425   copying MDAnalysis/lib/distances.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2022-08-30T21:11:59,433   copying MDAnalysis/lib/pkdtree.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2022-08-30T21:11:59,437   copying MDAnalysis/lib/transformations.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2022-08-30T21:11:59,446   copying MDAnalysis/lib/mdamath.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2022-08-30T21:11:59,451   copying MDAnalysis/lib/util.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2022-08-30T21:11:59,460   copying MDAnalysis/lib/NeighborSearch.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2022-08-30T21:11:59,464   copying MDAnalysis/lib/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2022-08-30T21:11:59,467   copying MDAnalysis/lib/log.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2022-08-30T21:11:59,472   copying MDAnalysis/lib/correlations.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2022-08-30T21:11:59,476   copying MDAnalysis/lib/picklable_file_io.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2022-08-30T21:11:59,483   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations
2022-08-30T21:11:59,485   copying MDAnalysis/transformations/rotate.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations
2022-08-30T21:11:59,489   copying MDAnalysis/transformations/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations
2022-08-30T21:11:59,493   copying MDAnalysis/transformations/translate.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations
2022-08-30T21:11:59,497   copying MDAnalysis/transformations/boxdimensions.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations
2022-08-30T21:11:59,500   copying MDAnalysis/transformations/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations
2022-08-30T21:11:59,504   copying MDAnalysis/transformations/fit.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations
2022-08-30T21:11:59,509   copying MDAnalysis/transformations/positionaveraging.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations
2022-08-30T21:11:59,513   copying MDAnalysis/transformations/wrap.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations
2022-08-30T21:11:59,519   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2022-08-30T21:11:59,520   copying MDAnalysis/core/topologyobjects.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2022-08-30T21:11:59,526   copying MDAnalysis/core/groups.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2022-08-30T21:11:59,541   copying MDAnalysis/core/topologyattrs.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2022-08-30T21:11:59,549   copying MDAnalysis/core/_get_readers.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2022-08-30T21:11:59,553   copying MDAnalysis/core/accessors.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2022-08-30T21:11:59,557   copying MDAnalysis/core/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2022-08-30T21:11:59,560   copying MDAnalysis/core/universe.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2022-08-30T21:11:59,567   copying MDAnalysis/core/selection.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2022-08-30T21:11:59,575   copying MDAnalysis/core/topology.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2022-08-30T21:11:59,583   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,584   copying MDAnalysis/analysis/gnm.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,589   copying MDAnalysis/analysis/dihedrals.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,594   copying MDAnalysis/analysis/distances.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,598   copying MDAnalysis/analysis/rms.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,605   copying MDAnalysis/analysis/helix_analysis.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,609   copying MDAnalysis/analysis/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,614   copying MDAnalysis/analysis/align.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,621   copying MDAnalysis/analysis/density.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,627   copying MDAnalysis/analysis/diffusionmap.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,631   copying MDAnalysis/analysis/bat.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,636   copying MDAnalysis/analysis/psa.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,645   copying MDAnalysis/analysis/contacts.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,649   copying MDAnalysis/analysis/pca.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,655   copying MDAnalysis/analysis/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,658   copying MDAnalysis/analysis/nuclinfo.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,664   copying MDAnalysis/analysis/nucleicacids.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,668   copying MDAnalysis/analysis/msd.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,673   copying MDAnalysis/analysis/dielectric.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,677   copying MDAnalysis/analysis/polymer.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,682   copying MDAnalysis/analysis/leaflet.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,686   copying MDAnalysis/analysis/lineardensity.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,690   copying MDAnalysis/analysis/waterdynamics.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,696   copying MDAnalysis/analysis/rdf.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:11:59,703   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/converters
2022-08-30T21:11:59,705   copying MDAnalysis/converters/ParmEd.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters
2022-08-30T21:11:59,710   copying MDAnalysis/converters/RDKitParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters
2022-08-30T21:11:59,715   copying MDAnalysis/converters/ParmEdParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters
2022-08-30T21:11:59,720   copying MDAnalysis/converters/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters
2022-08-30T21:11:59,724   copying MDAnalysis/converters/OpenMM.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters
2022-08-30T21:11:59,729   copying MDAnalysis/converters/OpenMMParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters
2022-08-30T21:11:59,734   copying MDAnalysis/converters/RDKit.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters
2022-08-30T21:11:59,743   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/selections
2022-08-30T21:11:59,745   copying MDAnalysis/selections/jmol.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections
2022-08-30T21:11:59,749   copying MDAnalysis/selections/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections
2022-08-30T21:11:59,754   copying MDAnalysis/selections/vmd.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections
2022-08-30T21:11:59,759   copying MDAnalysis/selections/gromacs.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections
2022-08-30T21:11:59,763   copying MDAnalysis/selections/pymol.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections
2022-08-30T21:11:59,767   copying MDAnalysis/selections/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections
2022-08-30T21:11:59,771   copying MDAnalysis/selections/charmm.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections
2022-08-30T21:11:59,776   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary
2022-08-30T21:11:59,779   copying MDAnalysis/auxiliary/core.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary
2022-08-30T21:11:59,783   copying MDAnalysis/auxiliary/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary
2022-08-30T21:11:59,789   copying MDAnalysis/auxiliary/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary
2022-08-30T21:11:59,794   copying MDAnalysis/auxiliary/XVG.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary
2022-08-30T21:11:59,803   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,804   copying MDAnalysis/coordinates/CRD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,810   copying MDAnalysis/coordinates/memory.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,816   copying MDAnalysis/coordinates/TXYZ.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,821   copying MDAnalysis/coordinates/ParmEd.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,824   copying MDAnalysis/coordinates/PDBQT.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,829   copying MDAnalysis/coordinates/H5MD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,837   copying MDAnalysis/coordinates/core.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,842   copying MDAnalysis/coordinates/MOL2.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,847   copying MDAnalysis/coordinates/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,856   copying MDAnalysis/coordinates/GRO.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,862   copying MDAnalysis/coordinates/NAMDBIN.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,867   copying MDAnalysis/coordinates/chain.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,873   copying MDAnalysis/coordinates/INPCRD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,877   copying MDAnalysis/coordinates/DMS.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,882   copying MDAnalysis/coordinates/FHIAIMS.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,886   copying MDAnalysis/coordinates/PQR.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,891   copying MDAnalysis/coordinates/PDB.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,897   copying MDAnalysis/coordinates/GMS.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,902   copying MDAnalysis/coordinates/GSD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,906   copying MDAnalysis/coordinates/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,913   copying MDAnalysis/coordinates/MMTF.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,916   copying MDAnalysis/coordinates/TRZ.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,922   copying MDAnalysis/coordinates/DLPoly.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,926   copying MDAnalysis/coordinates/TRR.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,931   copying MDAnalysis/coordinates/DCD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,936   copying MDAnalysis/coordinates/null.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,940   copying MDAnalysis/coordinates/XDR.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,945   copying MDAnalysis/coordinates/XTC.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,949   copying MDAnalysis/coordinates/LAMMPS.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,955   copying MDAnalysis/coordinates/XYZ.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,960   copying MDAnalysis/coordinates/chemfiles.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,966   copying MDAnalysis/coordinates/TRJ.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:11:59,976   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:11:59,978   copying MDAnalysis/topology/HoomdXMLParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:11:59,982   copying MDAnalysis/topology/ITPParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:11:59,988   copying MDAnalysis/topology/PQRParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:11:59,992   copying MDAnalysis/topology/core.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:11:59,995   copying MDAnalysis/topology/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:11:59,999   copying MDAnalysis/topology/TPRParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,004   copying MDAnalysis/topology/TXYZParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,007   copying MDAnalysis/topology/PDBParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,012   copying MDAnalysis/topology/CRDParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,017   copying MDAnalysis/topology/ParmEdParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,020   copying MDAnalysis/topology/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,026   copying MDAnalysis/topology/guessers.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,031   copying MDAnalysis/topology/GMSParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,034   copying MDAnalysis/topology/TOPParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,040   copying MDAnalysis/topology/tables.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,044   copying MDAnalysis/topology/PSFParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,049   copying MDAnalysis/topology/PDBQTParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,053   copying MDAnalysis/topology/MinimalParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,057   copying MDAnalysis/topology/ExtendedPDBParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,060   copying MDAnalysis/topology/FHIAIMSParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,064   copying MDAnalysis/topology/XYZParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,067   copying MDAnalysis/topology/GROParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,072   copying MDAnalysis/topology/MOL2Parser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,076   copying MDAnalysis/topology/DLPolyParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,081   copying MDAnalysis/topology/MMTFParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,085   copying MDAnalysis/topology/LAMMPSParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,091   copying MDAnalysis/topology/DMSParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,096   copying MDAnalysis/topology/GSDParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology
2022-08-30T21:12:00,101   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/tests
2022-08-30T21:12:00,103   copying MDAnalysis/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/tests
2022-08-30T21:12:00,108   copying MDAnalysis/tests/datafiles.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/tests
2022-08-30T21:12:00,113   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats
2022-08-30T21:12:00,115   copying MDAnalysis/lib/formats/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats
2022-08-30T21:12:00,121   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy
2022-08-30T21:12:00,123   copying MDAnalysis/analysis/legacy/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy
2022-08-30T21:12:00,128   copying MDAnalysis/analysis/legacy/x3dna.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy
2022-08-30T21:12:00,136   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data
2022-08-30T21:12:00,139   copying MDAnalysis/analysis/data/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data
2022-08-30T21:12:00,142   copying MDAnalysis/analysis/data/filenames.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data
2022-08-30T21:12:00,149   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds
2022-08-30T21:12:00,151   copying MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds
2022-08-30T21:12:00,155   copying MDAnalysis/analysis/hbonds/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds
2022-08-30T21:12:00,161   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore
2022-08-30T21:12:00,164   copying MDAnalysis/analysis/encore/covariance.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore
2022-08-30T21:12:00,169   copying MDAnalysis/analysis/encore/similarity.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore
2022-08-30T21:12:00,178   copying MDAnalysis/analysis/encore/confdistmatrix.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore
2022-08-30T21:12:00,185   copying MDAnalysis/analysis/encore/bootstrap.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore
2022-08-30T21:12:00,189   copying MDAnalysis/analysis/encore/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore
2022-08-30T21:12:00,193   copying MDAnalysis/analysis/encore/utils.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore
2022-08-30T21:12:00,200   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2
2022-08-30T21:12:00,202   copying MDAnalysis/analysis/hole2/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2
2022-08-30T21:12:00,208   copying MDAnalysis/analysis/hole2/hole.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2
2022-08-30T21:12:00,216   copying MDAnalysis/analysis/hole2/templates.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2
2022-08-30T21:12:00,221   copying MDAnalysis/analysis/hole2/utils.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2
2022-08-30T21:12:00,228   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds
2022-08-30T21:12:00,231   copying MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds
2022-08-30T21:12:00,238   copying MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds
2022-08-30T21:12:00,243   copying MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds
2022-08-30T21:12:00,252   copying MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds
2022-08-30T21:12:00,257   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering
2022-08-30T21:12:00,259   copying MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering
2022-08-30T21:12:00,264   copying MDAnalysis/analysis/encore/clustering/cluster.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering
2022-08-30T21:12:00,268   copying MDAnalysis/analysis/encore/clustering/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering
2022-08-30T21:12:00,271   copying MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering
2022-08-30T21:12:00,277   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction
2022-08-30T21:12:00,279   copying MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction
2022-08-30T21:12:00,283   copying MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction
2022-08-30T21:12:00,287   copying MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction
2022-08-30T21:12:00,293   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr
2022-08-30T21:12:00,294   copying MDAnalysis/topology/tpr/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr
2022-08-30T21:12:00,298   copying MDAnalysis/topology/tpr/obj.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr
2022-08-30T21:12:00,303   copying MDAnalysis/topology/tpr/utils.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr
2022-08-30T21:12:00,309   copying MDAnalysis/topology/tpr/setting.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr
2022-08-30T21:12:00,319   copying MDAnalysis/analysis/data/rama_ref_data.npy -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data
2022-08-30T21:12:00,326   copying MDAnalysis/analysis/data/janin_ref_data.npy -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data
2022-08-30T21:12:00,369   running build_ext
2022-08-30T21:12:00,373   building 'MDAnalysis.lib.formats.libdcd' extension
2022-08-30T21:12:00,375   creating build/temp.linux-armv7l-cpython-39
2022-08-30T21:12:00,375   creating build/temp.linux-armv7l-cpython-39/MDAnalysis
2022-08-30T21:12:00,376   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib
2022-08-30T21:12:00,378   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats
2022-08-30T21:12:00,380   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include -I/usr/include/python3.9 -c MDAnalysis/lib/formats/libdcd.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros
2022-08-30T21:12:00,450   cc1: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:12:01,209   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2022-08-30T21:12:01,210                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-08-30T21:12:01,210                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-08-30T21:12:01,210                    from MDAnalysis/lib/formats/libdcd.c:779:
2022-08-30T21:12:01,211   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-08-30T21:12:01,211      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-08-30T21:12:01,211         |  ^~~~~~~
2022-08-30T21:12:01,367   In file included from MDAnalysis/lib/formats/libdcd.c:791:
2022-08-30T21:12:01,367   MDAnalysis/lib/formats/include/readdcd.h: In function ‘read_dcdstep’:
2022-08-30T21:12:01,368   MDAnalysis/lib/formats/include/readdcd.h:562:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-08-30T21:12:01,368     562 |       if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT;
2022-08-30T21:12:01,369         |                     ^~
2022-08-30T21:12:01,376   MDAnalysis/lib/formats/include/readdcd.h: In function ‘write_dcdheader’:
2022-08-30T21:12:01,377   MDAnalysis/lib/formats/include/readdcd.h:698:14: warning: unused variable ‘tmbuf’ [-Wunused-variable]
2022-08-30T21:12:01,377     698 |   struct tm *tmbuf;
2022-08-30T21:12:01,378         |              ^~~~~
2022-08-30T21:12:01,378   MDAnalysis/lib/formats/include/readdcd.h:697:10: warning: unused variable ‘cur_time’ [-Wunused-variable]
2022-08-30T21:12:01,379     697 |   time_t cur_time;
2022-08-30T21:12:01,379         |          ^~~~~~~~
2022-08-30T21:12:05,872   In file included from MDAnalysis/lib/formats/include/readdcd.h:25,
2022-08-30T21:12:05,873                    from MDAnalysis/lib/formats/libdcd.c:791:
2022-08-30T21:12:05,873   At top level:
2022-08-30T21:12:05,877   MDAnalysis/lib/formats/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2022-08-30T21:12:05,878      96 | static void swap2_aligned(void *v, long ndata) {
2022-08-30T21:12:05,878         |             ^~~~~~~~~~~~~
2022-08-30T21:12:05,879   MDAnalysis/lib/formats/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2022-08-30T21:12:05,879      32 | static void swap2_unaligned(void *v, long ndata) {
2022-08-30T21:12:05,879         |             ^~~~~~~~~~~~~~~
2022-08-30T21:12:05,880   In file included from MDAnalysis/lib/formats/libdcd.c:790:
2022-08-30T21:12:05,880   MDAnalysis/lib/formats/include/fastio.h:453:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2022-08-30T21:12:05,880     453 | static int fio_write_str(fio_fd fd, const char *str) {
2022-08-30T21:12:05,881         |            ^~~~~~~~~~~~~
2022-08-30T21:12:05,881   MDAnalysis/lib/formats/include/fastio.h:449:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2022-08-30T21:12:05,881     449 | static int fio_read_int32(fio_fd fd, int *i) {
2022-08-30T21:12:05,881         |            ^~~~~~~~~~~~~~
2022-08-30T21:13:23,138   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.cpython-39-arm-linux-gnueabihf.so
2022-08-30T21:13:23,644   building 'MDAnalysis.lib.c_distances' extension
2022-08-30T21:13:23,647   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/c_distances.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros
2022-08-30T21:13:23,722   cc1: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:13:24,480   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2022-08-30T21:13:24,481                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-08-30T21:13:24,481                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-08-30T21:13:24,482                    from MDAnalysis/lib/c_distances.c:781:
2022-08-30T21:13:24,482   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-08-30T21:13:24,482      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-08-30T21:13:24,482         |  ^~~~~~~
2022-08-30T21:14:35,685   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.cpython-39-arm-linux-gnueabihf.so
2022-08-30T21:14:36,172   building 'MDAnalysis.lib.c_distances_openmp' extension
2022-08-30T21:14:36,174   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DPARALLEL -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/c_distances_openmp.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.o -fopenmp -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros
2022-08-30T21:14:36,241   cc1: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:14:36,974   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2022-08-30T21:14:36,974                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-08-30T21:14:36,974                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-08-30T21:14:36,975                    from MDAnalysis/lib/c_distances_openmp.c:792:
2022-08-30T21:14:36,975   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-08-30T21:14:36,975      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-08-30T21:14:36,976         |  ^~~~~~~
2022-08-30T21:14:50,584   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.o -L/usr/lib -lm -lgomp -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.cpython-39-arm-linux-gnueabihf.so -fopenmp
2022-08-30T21:14:50,917   building 'MDAnalysis.lib.qcprot' extension
2022-08-30T21:14:50,920   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/qcprot.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros
2022-08-30T21:14:50,981   cc1: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:14:51,679   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2022-08-30T21:14:51,680                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-08-30T21:14:51,680                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-08-30T21:14:51,681                    from MDAnalysis/lib/qcprot.c:775:
2022-08-30T21:14:51,681   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-08-30T21:14:51,681      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-08-30T21:14:51,681         |  ^~~~~~~
2022-08-30T21:14:51,816   MDAnalysis/lib/qcprot.c: In function ‘__pyx_pf_10MDAnalysis_3lib_6qcprot_InnerProduct’:
2022-08-30T21:14:51,819   MDAnalysis/lib/qcprot.c:2385:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-08-30T21:14:51,819    2385 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2022-08-30T21:14:51,820         |                                   ^
2022-08-30T21:14:51,829   MDAnalysis/lib/qcprot.c:2593:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-08-30T21:14:51,829    2593 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2022-08-30T21:14:51,830         |                                   ^
2022-08-30T21:15:05,590   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.cpython-39-arm-linux-gnueabihf.so
2022-08-30T21:15:05,878   building 'MDAnalysis.lib._transformations' extension
2022-08-30T21:15:05,880   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/src
2022-08-30T21:15:05,881   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations
2022-08-30T21:15:05,884   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/src/transformations/transformations.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations/transformations.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros
2022-08-30T21:15:05,941   cc1: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:15:06,641   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2022-08-30T21:15:06,641                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-08-30T21:15:06,642                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-08-30T21:15:06,642                    from MDAnalysis/lib/src/transformations/transformations.c:73:
2022-08-30T21:15:06,642   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-08-30T21:15:06,642      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-08-30T21:15:06,643         |  ^~~~~~~
2022-08-30T21:15:06,793   MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_superimposition_matrix’:
2022-08-30T21:15:06,794   MDAnalysis/lib/src/transformations/transformations.c:1845: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2022-08-30T21:15:06,795    1845 |                 #pragma vector always
2022-08-30T21:15:06,795         |
2022-08-30T21:15:06,801   MDAnalysis/lib/src/transformations/transformations.c:1962: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2022-08-30T21:15:06,802    1962 |                     #pragma vector always
2022-08-30T21:15:06,802         |
2022-08-30T21:15:06,804   MDAnalysis/lib/src/transformations/transformations.c:1986: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2022-08-30T21:15:06,805    1986 |                     #pragma vector always
2022-08-30T21:15:06,805         |
2022-08-30T21:15:06,814   MDAnalysis/lib/src/transformations/transformations.c: In function ‘axis2tuple’:
2022-08-30T21:15:06,817   MDAnalysis/lib/src/transformations/transformations.c:2122:5: warning: ‘PyUnicode_GetSize’ is deprecated [-Wdeprecated-declarations]
2022-08-30T21:15:06,817    2122 |     if (PyUnicode_Check(axes) && (PyUnicode_GetSize(axes) == 4)) {
2022-08-30T21:15:06,818         |     ^~
2022-08-30T21:15:06,819   In file included from /usr/include/python3.9/Python.h:97,
2022-08-30T21:15:06,820                    from MDAnalysis/lib/src/transformations/transformations.c:68:
2022-08-30T21:15:06,820   /usr/include/python3.9/unicodeobject.h:177:43: note: declared here
2022-08-30T21:15:06,820     177 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_ssize_t) PyUnicode_GetSize(
2022-08-30T21:15:06,820         |                                           ^~~~~~~~~~~~~~~~~
2022-08-30T21:15:06,907   MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_vector_norm’:
2022-08-30T21:15:06,908   MDAnalysis/lib/src/transformations/transformations.c:3427: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2022-08-30T21:15:06,909    3427 |             #pragma vector always
2022-08-30T21:15:06,909         |
2022-08-30T21:15:06,916   MDAnalysis/lib/src/transformations/transformations.c:3508: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2022-08-30T21:15:06,916    3508 |                 #pragma vector always
2022-08-30T21:15:06,916         |
2022-08-30T21:15:06,929   MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_unit_vector’:
2022-08-30T21:15:06,931   MDAnalysis/lib/src/transformations/transformations.c:3610: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2022-08-30T21:15:06,931    3610 |             #pragma vector always
2022-08-30T21:15:06,932         |
2022-08-30T21:15:06,933   MDAnalysis/lib/src/transformations/transformations.c:3615: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2022-08-30T21:15:06,934    3615 |             #pragma vector always
2022-08-30T21:15:06,934         |
2022-08-30T21:15:06,943   MDAnalysis/lib/src/transformations/transformations.c:3679: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2022-08-30T21:15:06,944    3679 |                 #pragma vector always
2022-08-30T21:15:06,944         |
2022-08-30T21:15:06,946   MDAnalysis/lib/src/transformations/transformations.c:3684: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2022-08-30T21:15:06,946    3684 |                 #pragma vector always
2022-08-30T21:15:06,947         |
2022-08-30T21:15:07,110   At top level:
2022-08-30T21:15:07,111   MDAnalysis/lib/src/transformations/transformations.c:910:1: warning: ‘PyConverter_DoubleVector4Copy’ defined but not used [-Wunused-function]
2022-08-30T21:15:07,112     910 | PyConverter_DoubleVector4Copy(
2022-08-30T21:15:07,112         | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:15:07,112   MDAnalysis/lib/src/transformations/transformations.c:804:1: warning: ‘PyConverter_DoubleArrayOrNone’ defined but not used [-Wunused-function]
2022-08-30T21:15:07,113     804 | PyConverter_DoubleArrayOrNone(
2022-08-30T21:15:07,113         | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:15:07,113   MDAnalysis/lib/src/transformations/transformations.c:774:1: warning: ‘PyConverter_DoubleArray’ defined but not used [-Wunused-function]
2022-08-30T21:15:07,114     774 | PyConverter_DoubleArray(
2022-08-30T21:15:07,114         | ^~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:15:20,826   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations/transformations.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_transformations.cpython-39-arm-linux-gnueabihf.so
2022-08-30T21:15:21,109   building 'MDAnalysis.lib.formats.libmdaxdr' extension
2022-08-30T21:15:21,112   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src
2022-08-30T21:15:21,115   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/libmdaxdr.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros
2022-08-30T21:15:21,184   cc1: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:15:21,890   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2022-08-30T21:15:21,891                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-08-30T21:15:21,891                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-08-30T21:15:21,892                    from MDAnalysis/lib/formats/libmdaxdr.c:802:
2022-08-30T21:15:21,892   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-08-30T21:15:21,893      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-08-30T21:15:21,893         |  ^~~~~~~
2022-08-30T21:15:21,976   In file included from MDAnalysis/lib/formats/libmdaxdr.c:811:
2022-08-30T21:15:21,976   MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-08-30T21:15:21,977       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-08-30T21:15:21,977         |
2022-08-30T21:15:21,980   In file included from MDAnalysis/lib/formats/libmdaxdr.c:812:
2022-08-30T21:15:21,981   MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2022-08-30T21:15:21,981       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-08-30T21:15:21,981         |
2022-08-30T21:15:21,982   In file included from MDAnalysis/lib/formats/include/xdrfile_xtc.h:43,
2022-08-30T21:15:21,982                    from MDAnalysis/lib/formats/libmdaxdr.c:812:
2022-08-30T21:15:21,983   MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-08-30T21:15:21,983       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-08-30T21:15:21,983         |
2022-08-30T21:15:21,984   In file included from MDAnalysis/lib/formats/libmdaxdr.c:813:
2022-08-30T21:15:21,984   MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2022-08-30T21:15:21,985       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-08-30T21:15:21,985         |
2022-08-30T21:16:34,828   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/trr_seek.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/trr_seek.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros
2022-08-30T21:16:34,891   cc1: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:16:35,025   In file included from MDAnalysis/lib/formats/src/trr_seek.c:30:
2022-08-30T21:16:35,025   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-08-30T21:16:35,026       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-08-30T21:16:35,026         |
2022-08-30T21:16:35,038   In file included from MDAnalysis/lib/formats/src/trr_seek.c:31:
2022-08-30T21:16:35,038   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2022-08-30T21:16:35,039       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-08-30T21:16:35,039         |
2022-08-30T21:16:35,039   In file included from /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include/xdrfile_trr.h:42,
2022-08-30T21:16:35,040                    from MDAnalysis/lib/formats/src/trr_seek.c:31:
2022-08-30T21:16:35,040   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-08-30T21:16:35,040       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-08-30T21:16:35,041         |
2022-08-30T21:16:35,045   MDAnalysis/lib/formats/src/trr_seek.c: In function ‘read_trr_n_frames’:
2022-08-30T21:16:35,046   MDAnalysis/lib/formats/src/trr_seek.c:39:27: warning: unused variable ‘totalframebytes’ [-Wunused-variable]
2022-08-30T21:16:35,046      39 |   int result, framebytes, totalframebytes;
2022-08-30T21:16:35,047         |                           ^~~~~~~~~~~~~~~
2022-08-30T21:16:35,047   MDAnalysis/lib/formats/src/trr_seek.c:38:15: warning: unused variable ‘lambda’ [-Wunused-variable]
2022-08-30T21:16:35,048      38 |   float time, lambda;
2022-08-30T21:16:35,048         |               ^~~~~~
2022-08-30T21:16:35,048   MDAnalysis/lib/formats/src/trr_seek.c:38:9: warning: unused variable ‘time’ [-Wunused-variable]
2022-08-30T21:16:35,048      38 |   float time, lambda;
2022-08-30T21:16:35,049         |         ^~~~
2022-08-30T21:16:35,308   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xdrfile.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros
2022-08-30T21:16:35,366   cc1: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:16:35,601   In file included from MDAnalysis/lib/formats/src/xdrfile.c:62:
2022-08-30T21:16:35,601   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-08-30T21:16:35,602       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-08-30T21:16:35,602         |
2022-08-30T21:16:35,624   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘sizeofint’:
2022-08-30T21:16:35,625   MDAnalysis/lib/formats/src/xdrfile.c:501:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-08-30T21:16:35,625     501 |     while (size >= num && num_of_bits < 32)
2022-08-30T21:16:35,626         |                 ^~
2022-08-30T21:16:35,628   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘sizeofints’:
2022-08-30T21:16:35,629   MDAnalysis/lib/formats/src/xdrfile.c:547:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-08-30T21:16:35,629     547 |     while (bytes[num_of_bytes] >= num)
2022-08-30T21:16:35,629         |                                ^~
2022-08-30T21:16:35,632   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘encodeints’:
2022-08-30T21:16:35,633   MDAnalysis/lib/formats/src/xdrfile.c:656:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-08-30T21:16:35,634     656 |     if (num_of_bits >= num_of_bytes * 8)
2022-08-30T21:16:35,634         |                     ^~
2022-08-30T21:16:35,635   MDAnalysis/lib/formats/src/xdrfile.c:658:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-08-30T21:16:35,635     658 |   for (i = 0; i < num_of_bytes; i++)
2022-08-30T21:16:35,636         |                 ^
2022-08-30T21:16:35,637   MDAnalysis/lib/formats/src/xdrfile.c:666:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-08-30T21:16:35,637     666 |   for (i = 0; i < num_of_bytes-1; i++)
2022-08-30T21:16:35,638         |                 ^
2022-08-30T21:16:35,639   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘decodebits’:
2022-08-30T21:16:35,640   MDAnalysis/lib/formats/src/xdrfile.c:706:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-08-30T21:16:35,641     706 |   if (lastbits < num_of_bits)
2022-08-30T21:16:35,641         |                ^
2022-08-30T21:16:35,645   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_decompress_coord_float’:
2022-08-30T21:16:35,646   MDAnalysis/lib/formats/src/xdrfile.c:816:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-08-30T21:16:35,647     816 |  if(size3>xfp->buf1size)
2022-08-30T21:16:35,647         |          ^
2022-08-30T21:16:35,651   MDAnalysis/lib/formats/src/xdrfile.c:868:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-08-30T21:16:35,651     868 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-08-30T21:16:35,651         |                   ^
2022-08-30T21:16:35,652   MDAnalysis/lib/formats/src/xdrfile.c:868:37: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2022-08-30T21:16:35,652     868 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-08-30T21:16:35,652         |                                     ^~~
2022-08-30T21:16:35,657   MDAnalysis/lib/formats/src/xdrfile.c:794:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2022-08-30T21:16:35,658     794 |  int smallnum, smaller, larger, i, is_smaller, run;
2022-08-30T21:16:35,658         |                         ^~~~~~
2022-08-30T21:16:35,658   MDAnalysis/lib/formats/src/xdrfile.c:791:16: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2022-08-30T21:16:35,659     791 |  int smallidx, minidx, maxidx;
2022-08-30T21:16:35,659         |                ^~~~~~
2022-08-30T21:16:35,659   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2022-08-30T21:16:35,660   MDAnalysis/lib/formats/src/xdrfile.c:1012:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-08-30T21:16:35,661    1012 |  if(size3>xfp->buf1size)
2022-08-30T21:16:35,661         |          ^
2022-08-30T21:16:35,670   MDAnalysis/lib/formats/src/xdrfile.c:1135:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-08-30T21:16:35,671    1135 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2022-08-30T21:16:35,671         |                  ^
2022-08-30T21:16:35,672   MDAnalysis/lib/formats/src/xdrfile.c:1141:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-08-30T21:16:35,672    1141 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-08-30T21:16:35,672         |                   ^
2022-08-30T21:16:35,673   MDAnalysis/lib/formats/src/xdrfile.c:1141:37: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2022-08-30T21:16:35,673    1141 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-08-30T21:16:35,674         |                                     ^~~
2022-08-30T21:16:35,680   MDAnalysis/lib/formats/src/xdrfile.c:1273:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-08-30T21:16:35,681    1273 |  if(tmp==(unsigned int)buf2[0])
2022-08-30T21:16:35,681         |        ^~
2022-08-30T21:16:35,681   MDAnalysis/lib/formats/src/xdrfile.c:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2022-08-30T21:16:35,682    1001 |  int errval=1;
2022-08-30T21:16:35,682         |      ^~~~~~
2022-08-30T21:16:35,684   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_decompress_coord_double’:
2022-08-30T21:16:35,685   MDAnalysis/lib/formats/src/xdrfile.c:1313:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-08-30T21:16:35,685    1313 |  if(size3>xfp->buf1size)
2022-08-30T21:16:35,686         |          ^
2022-08-30T21:16:35,689   MDAnalysis/lib/formats/src/xdrfile.c:1368:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-08-30T21:16:35,690    1368 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-08-30T21:16:35,690         |                   ^
2022-08-30T21:16:35,691   MDAnalysis/lib/formats/src/xdrfile.c:1368:37: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2022-08-30T21:16:35,691    1368 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-08-30T21:16:35,691         |                                     ^~~
2022-08-30T21:16:35,697   MDAnalysis/lib/formats/src/xdrfile.c:1290:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2022-08-30T21:16:35,698    1290 |  int smallnum, smaller, larger, i, is_smaller, run;
2022-08-30T21:16:35,698         |                         ^~~~~~
2022-08-30T21:16:35,699   MDAnalysis/lib/formats/src/xdrfile.c:1287:16: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2022-08-30T21:16:35,699    1287 |  int smallidx, minidx, maxidx;
2022-08-30T21:16:35,699         |                ^~~~~~
2022-08-30T21:16:35,701   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2022-08-30T21:16:35,702   MDAnalysis/lib/formats/src/xdrfile.c:1504:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-08-30T21:16:35,702    1504 |  if(size3>xfp->buf1size) {
2022-08-30T21:16:35,703         |          ^
2022-08-30T21:16:35,717   MDAnalysis/lib/formats/src/xdrfile.c:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-08-30T21:16:35,718    1619 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2022-08-30T21:16:35,718         |                  ^
2022-08-30T21:16:35,719   MDAnalysis/lib/formats/src/xdrfile.c:1624:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-08-30T21:16:35,719    1624 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-08-30T21:16:35,720         |                   ^
2022-08-30T21:16:35,721   MDAnalysis/lib/formats/src/xdrfile.c:1624:37: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2022-08-30T21:16:35,721    1624 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-08-30T21:16:35,722         |                                     ^~~
2022-08-30T21:16:35,729   MDAnalysis/lib/formats/src/xdrfile.c:1734:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-08-30T21:16:35,729    1734 |  if(tmp==(unsigned int)buf2[0])
2022-08-30T21:16:35,730         |        ^~
2022-08-30T21:16:35,731   MDAnalysis/lib/formats/src/xdrfile.c:1494:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2022-08-30T21:16:35,731    1494 |  int errval=1;
2022-08-30T21:16:35,732         |      ^~~~~~
2022-08-30T21:16:35,764   MDAnalysis/lib/formats/src/xdrfile.c: At top level:
2022-08-30T21:16:35,766   MDAnalysis/lib/formats/src/xdrfile.c:2535:3: warning: initialization of ‘unsigned int (*)(XDR *)’ from incompatible pointer type ‘int64_t (*)(XDR *)’ {aka ‘long long int (*)(XDR *)’} [-Wincompatible-pointer-types]
2022-08-30T21:16:35,767    2535 |   xdrstdio_getpos,  /* get offset in the stream */
2022-08-30T21:16:35,767         |   ^~~~~~~~~~~~~~~
2022-08-30T21:16:35,768   MDAnalysis/lib/formats/src/xdrfile.c:2535:3: note: (near initialization for ‘xdrstdio_ops.x_getpostn’)
2022-08-30T21:16:35,769   MDAnalysis/lib/formats/src/xdrfile.c:2536:3: warning: initialization of ‘int (*)(XDR *, unsigned int)’ from incompatible pointer type ‘int (*)(XDR *, int64_t,  int)’ {aka ‘int (*)(XDR *, long long int,  int)’} [-Wincompatible-pointer-types]
2022-08-30T21:16:35,770    2536 |   xdrstdio_setpos,  /* set offset in the stream */
2022-08-30T21:16:35,770         |   ^~~~~~~~~~~~~~~
2022-08-30T21:16:35,770   MDAnalysis/lib/formats/src/xdrfile.c:2536:3: note: (near initialization for ‘xdrstdio_ops.x_setpostn’)
2022-08-30T21:16:39,721   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_write_string’:
2022-08-30T21:16:39,724   MDAnalysis/lib/formats/src/xdrfile.c:2361:5: warning: ‘size’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-08-30T21:16:39,724    2361 |  if (size > maxsize)
2022-08-30T21:16:39,725         |     ^
2022-08-30T21:16:39,727   MDAnalysis/lib/formats/src/xdrfile.c:2335:15: note: ‘size’ was declared here
2022-08-30T21:16:39,727    2335 |  unsigned int size;
2022-08-30T21:16:39,728         |               ^~~~
2022-08-30T21:16:40,777   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2022-08-30T21:16:40,778   MDAnalysis/lib/formats/src/xdrfile.c:1157:21: warning: ‘prevcoord[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-08-30T21:16:40,778    1157 |    abs(thiscoord[2] - prevcoord[2]) < larger) {
2022-08-30T21:16:40,779         |        ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2022-08-30T21:16:40,779   MDAnalysis/lib/formats/src/xdrfile.c:1156:21: warning: ‘prevcoord[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-08-30T21:16:40,780    1156 |    abs(thiscoord[1] - prevcoord[1]) < larger &&
2022-08-30T21:16:40,780         |        ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2022-08-30T21:16:40,781   MDAnalysis/lib/formats/src/xdrfile.c:1155:21: warning: ‘prevcoord[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-08-30T21:16:40,781    1155 |    abs(thiscoord[0] - prevcoord[0]) < larger &&
2022-08-30T21:16:40,781         |        ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2022-08-30T21:16:42,601   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2022-08-30T21:16:42,603   MDAnalysis/lib/formats/src/xdrfile.c:1639:21: warning: ‘prevcoord[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-08-30T21:16:42,604    1639 |    abs(thiscoord[2] - prevcoord[2]) < larger) {
2022-08-30T21:16:42,604         |        ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2022-08-30T21:16:42,605   MDAnalysis/lib/formats/src/xdrfile.c:1638:21: warning: ‘prevcoord[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-08-30T21:16:42,606    1638 |    abs(thiscoord[1] - prevcoord[1]) < larger &&
2022-08-30T21:16:42,606         |        ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2022-08-30T21:16:42,608   MDAnalysis/lib/formats/src/xdrfile.c:1637:21: warning: ‘prevcoord[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-08-30T21:16:42,608    1637 |    abs(thiscoord[0] - prevcoord[0]) < larger &&
2022-08-30T21:16:42,609         |        ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2022-08-30T21:16:45,322   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_trr.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros
2022-08-30T21:16:45,378   cc1: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:16:45,499   In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:38:
2022-08-30T21:16:45,500   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-08-30T21:16:45,500       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-08-30T21:16:45,500         |
2022-08-30T21:16:45,509   In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:39:
2022-08-30T21:16:45,510   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2022-08-30T21:16:45,510       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-08-30T21:16:45,510         |
2022-08-30T21:16:45,511   In file included from /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include/xdrfile_trr.h:42,
2022-08-30T21:16:45,511                    from MDAnalysis/lib/formats/src/xdrfile_trr.c:39:
2022-08-30T21:16:45,511   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-08-30T21:16:45,512       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-08-30T21:16:45,512         |
2022-08-30T21:16:45,514   MDAnalysis/lib/formats/src/xdrfile_trr.c: In function ‘do_trnheader’:
2022-08-30T21:16:45,514   MDAnalysis/lib/formats/src/xdrfile_trr.c:78:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-08-30T21:16:45,515      78 |     if (slen != strlen(version) + 1)
2022-08-30T21:16:45,515         |              ^~
2022-08-30T21:16:45,516   MDAnalysis/lib/formats/src/xdrfile_trr.c:86:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-08-30T21:16:45,516      86 |     if (xdrfile_write_string(version, xd) != (strlen(version) + 1))
2022-08-30T21:16:45,516         |                                           ^~
2022-08-30T21:16:45,552   MDAnalysis/lib/formats/src/xdrfile_trr.c: In function ‘write_trr’:
2022-08-30T21:16:45,553   MDAnalysis/lib/formats/src/xdrfile_trr.c:408:10: warning: ‘plcholder’ is used uninitialized in this function [-Wuninitialized]
2022-08-30T21:16:45,553     408 |   return do_trn(xd, 0, &step, &t, &lambda, box, &natoms, x, v, f, plcholder);
2022-08-30T21:16:45,554         |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:16:48,122   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xdrfile_xtc.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_xtc.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros
2022-08-30T21:16:48,179   cc1: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:16:48,239   In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:30:
2022-08-30T21:16:48,240   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-08-30T21:16:48,240       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-08-30T21:16:48,240         |
2022-08-30T21:16:48,268   In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:31:
2022-08-30T21:16:48,269   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2022-08-30T21:16:48,269       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-08-30T21:16:48,270         |
2022-08-30T21:16:48,270   In file included from /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include/xdrfile_xtc.h:43,
2022-08-30T21:16:48,270                    from MDAnalysis/lib/formats/src/xdrfile_xtc.c:31:
2022-08-30T21:16:48,271   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-08-30T21:16:48,271       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-08-30T21:16:48,271         |
2022-08-30T21:16:48,567   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xtc_seek.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xtc_seek.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros
2022-08-30T21:16:48,625   cc1: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:16:48,683   In file included from MDAnalysis/lib/formats/src/xtc_seek.c:25:
2022-08-30T21:16:48,683   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-08-30T21:16:48,683       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-08-30T21:16:48,684         |
2022-08-30T21:16:48,711   In file included from MDAnalysis/lib/formats/src/xtc_seek.c:26:
2022-08-30T21:16:48,711   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2022-08-30T21:16:48,712       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-08-30T21:16:48,712         |
2022-08-30T21:16:48,712   In file included from /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include/xdrfile_xtc.h:43,
2022-08-30T21:16:48,713                    from MDAnalysis/lib/formats/src/xtc_seek.c:26:
2022-08-30T21:16:48,713   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-08-30T21:16:48,713       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-08-30T21:16:48,714         |
2022-08-30T21:16:49,099   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/trr_seek.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xtc_seek.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.cpython-39-arm-linux-gnueabihf.so
2022-08-30T21:16:49,642   building 'MDAnalysis.lib.formats.cython_util' extension
2022-08-30T21:16:49,644   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/formats/cython_util.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.o -std=c99 -ffast-math -O3 -funroll-loops -fsigned-zeros
2022-08-30T21:16:49,710   cc1: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:16:50,434   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2022-08-30T21:16:50,435                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-08-30T21:16:50,435                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-08-30T21:16:50,436                    from MDAnalysis/lib/formats/cython_util.c:775:
2022-08-30T21:16:50,436   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-08-30T21:16:50,436      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-08-30T21:16:50,437         |  ^~~~~~~
2022-08-30T21:17:30,056   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.cpython-39-arm-linux-gnueabihf.so
2022-08-30T21:17:30,421   building 'MDAnalysis.analysis.encore.cutils' extension
2022-08-30T21:17:30,424   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis
2022-08-30T21:17:30,425   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore
2022-08-30T21:17:30,428   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/cutils.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3
2022-08-30T21:17:30,487   cc1: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:17:31,185   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2022-08-30T21:17:31,186                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-08-30T21:17:31,186                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-08-30T21:17:31,187                    from MDAnalysis/analysis/encore/cutils.c:775:
2022-08-30T21:17:31,187   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-08-30T21:17:31,187      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-08-30T21:17:31,188         |  ^~~~~~~
2022-08-30T21:17:37,335   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.cpython-39-arm-linux-gnueabihf.so
2022-08-30T21:17:37,590   building 'MDAnalysis.analysis.encore.clustering.affinityprop' extension
2022-08-30T21:17:37,592   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering
2022-08-30T21:17:37,595   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src
2022-08-30T21:17:37,597   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/clustering/affinityprop.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3
2022-08-30T21:17:37,661   cc1: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:17:38,379   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2022-08-30T21:17:38,380                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-08-30T21:17:38,380                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-08-30T21:17:38,380                    from MDAnalysis/analysis/encore/clustering/affinityprop.c:781:
2022-08-30T21:17:38,380   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-08-30T21:17:38,381      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-08-30T21:17:38,381         |  ^~~~~~~
2022-08-30T21:18:02,177   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/clustering/src/ap.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src/ap.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3
2022-08-30T21:18:02,226   cc1: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:18:04,622   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src/ap.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-39-arm-linux-gnueabihf.so
2022-08-30T21:18:04,936   building 'MDAnalysis.analysis.encore.dimensionality_reduction.stochasticproxembed' extension
2022-08-30T21:18:04,938   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction
2022-08-30T21:18:04,940   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src
2022-08-30T21:18:04,942   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3
2022-08-30T21:18:04,999   cc1: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:18:06,634   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -std=c99 -ffast-math -funroll-loops -fsigned-zeros -O3
2022-08-30T21:18:06,689   cc1: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:18:07,389   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2022-08-30T21:18:07,390                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-08-30T21:18:07,390                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-08-30T21:18:07,391                    from MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c:781:
2022-08-30T21:18:07,391   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-08-30T21:18:07,391      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-08-30T21:18:07,392         |  ^~~~~~~
2022-08-30T21:18:17,595   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-39-arm-linux-gnueabihf.so
2022-08-30T21:18:17,890   building 'MDAnalysis.lib._cutil' extension
2022-08-30T21:18:17,893   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/_cutil.cpp -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.o -ffast-math -O3 -funroll-loops -fsigned-zeros -std=c++11
2022-08-30T21:18:17,964   cc1plus: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:18:18,524   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2022-08-30T21:18:18,525                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-08-30T21:18:18,525                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-08-30T21:18:18,526                    from MDAnalysis/lib/_cutil.cpp:795:
2022-08-30T21:18:18,526   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-08-30T21:18:18,526      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-08-30T21:18:18,526         |  ^~~~~~~
2022-08-30T21:18:25,243   In file included from MDAnalysis/lib/_cutil.cpp:824:
2022-08-30T21:18:25,244   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:822:13: warning: ‘void _calc_dihedral_triclinic(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:18:25,244     822 | static void _calc_dihedral_triclinic(coordinate* atom1, coordinate* atom2,
2022-08-30T21:18:25,245         |             ^~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:18:25,245   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:786:13: warning: ‘void _calc_dihedral_ortho(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:18:25,246     786 | static void _calc_dihedral_ortho(coordinate* atom1, coordinate* atom2,
2022-08-30T21:18:25,246         |             ^~~~~~~~~~~~~~~~~~~~
2022-08-30T21:18:25,246   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:759:13: warning: ‘void _calc_dihedral(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:18:25,247     759 | static void _calc_dihedral(coordinate* atom1, coordinate* atom2,
2022-08-30T21:18:25,247         |             ^~~~~~~~~~~~~~
2022-08-30T21:18:25,248   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:684:13: warning: ‘void _calc_angle_triclinic(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:18:25,248     684 | static void _calc_angle_triclinic(coordinate* atom1, coordinate* atom2,
2022-08-30T21:18:25,248         |             ^~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:18:25,249   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:642:13: warning: ‘void _calc_angle_ortho(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:18:25,249     642 | static void _calc_angle_ortho(coordinate* atom1, coordinate* atom2,
2022-08-30T21:18:25,249         |             ^~~~~~~~~~~~~~~~~
2022-08-30T21:18:25,250   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:613:13: warning: ‘void _calc_angle(float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:18:25,250     613 | static void _calc_angle(coordinate* atom1, coordinate* atom2,
2022-08-30T21:18:25,250         |             ^~~~~~~~~~~
2022-08-30T21:18:25,251   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:591:13: warning: ‘void _calc_bond_distance_triclinic(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:18:25,251     591 | static void _calc_bond_distance_triclinic(coordinate* atom1, coordinate* atom2,
2022-08-30T21:18:25,252         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:18:25,252   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:568:13: warning: ‘void _calc_bond_distance_ortho(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:18:25,252     568 | static void _calc_bond_distance_ortho(coordinate* atom1, coordinate* atom2,
2022-08-30T21:18:25,253         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:18:25,253   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:552:13: warning: ‘void _calc_bond_distance(float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:18:25,254     552 | static void _calc_bond_distance(coordinate* atom1, coordinate* atom2,
2022-08-30T21:18:25,254         |             ^~~~~~~~~~~~~~~~~~~
2022-08-30T21:18:25,254   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:500:13: warning: ‘void _calc_self_distance_array_triclinic(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:18:25,255     500 | static void _calc_self_distance_array_triclinic(coordinate* ref, uint64_t numref,
2022-08-30T21:18:25,255         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:18:25,255   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:467:13: warning: ‘void _calc_self_distance_array_ortho(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:18:25,256     467 | static void _calc_self_distance_array_ortho(coordinate* ref, uint64_t numref,
2022-08-30T21:18:25,256         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:18:25,256   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:443:13: warning: ‘void _calc_self_distance_array(float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:18:25,257     443 | static void _calc_self_distance_array(coordinate* ref, uint64_t numref,
2022-08-30T21:18:25,257         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:18:25,257   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:419:13: warning: ‘void _calc_distance_array_triclinic(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:18:25,258     419 | static void _calc_distance_array_triclinic(coordinate* ref, uint64_t numref,
2022-08-30T21:18:25,258         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:18:25,258   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:394:13: warning: ‘void _calc_distance_array_ortho(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:18:25,259     394 | static void _calc_distance_array_ortho(coordinate* ref, uint64_t numref, coordinate* conf,
2022-08-30T21:18:25,259         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:18:25,259   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:376:13: warning: ‘void _calc_distance_array(float (*)[3], uint64_t, float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:18:25,260     376 | static void _calc_distance_array(coordinate* ref, uint64_t numref, coordinate* conf,
2022-08-30T21:18:25,260         |             ^~~~~~~~~~~~~~~~~~~~
2022-08-30T21:18:25,260   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:111:13: warning: ‘void _ortho_pbc(float (*)[3], uint64_t, float*)’ defined but not used [-Wunused-function]
2022-08-30T21:18:25,261     111 | static void _ortho_pbc(coordinate* coords, uint64_t numcoords, float* box)
2022-08-30T21:18:25,261         |             ^~~~~~~~~~
2022-08-30T21:19:26,315   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.cpython-39-arm-linux-gnueabihf.so
2022-08-30T21:19:27,135   building 'MDAnalysis.lib._augment' extension
2022-08-30T21:19:27,135   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/_augment.cpp -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.o -ffast-math -O3 -funroll-loops -fsigned-zeros -std=c++11
2022-08-30T21:19:27,208   cc1plus: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:19:27,771   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2022-08-30T21:19:27,772                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-08-30T21:19:27,772                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-08-30T21:19:27,773                    from MDAnalysis/lib/_augment.cpp:790:
2022-08-30T21:19:27,773   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-08-30T21:19:27,774      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-08-30T21:19:27,774         |  ^~~~~~~
2022-08-30T21:20:26,471   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.cpython-39-arm-linux-gnueabihf.so
2022-08-30T21:20:27,197   building 'MDAnalysis.lib.nsgrid' extension
2022-08-30T21:20:27,200   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/nsgrid.cpp -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.o -ffast-math -O3 -funroll-loops -fsigned-zeros -std=c++11
2022-08-30T21:20:27,276   cc1plus: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:20:33,012   In file included from MDAnalysis/lib/nsgrid.cpp:791:
2022-08-30T21:20:33,012   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:822:13: warning: ‘void _calc_dihedral_triclinic(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:20:33,013     822 | static void _calc_dihedral_triclinic(coordinate* atom1, coordinate* atom2,
2022-08-30T21:20:33,013         |             ^~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:20:33,013   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:786:13: warning: ‘void _calc_dihedral_ortho(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:20:33,014     786 | static void _calc_dihedral_ortho(coordinate* atom1, coordinate* atom2,
2022-08-30T21:20:33,014         |             ^~~~~~~~~~~~~~~~~~~~
2022-08-30T21:20:33,015   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:759:13: warning: ‘void _calc_dihedral(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:20:33,015     759 | static void _calc_dihedral(coordinate* atom1, coordinate* atom2,
2022-08-30T21:20:33,015         |             ^~~~~~~~~~~~~~
2022-08-30T21:20:33,016   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:684:13: warning: ‘void _calc_angle_triclinic(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:20:33,016     684 | static void _calc_angle_triclinic(coordinate* atom1, coordinate* atom2,
2022-08-30T21:20:33,017         |             ^~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:20:33,017   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:642:13: warning: ‘void _calc_angle_ortho(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:20:33,017     642 | static void _calc_angle_ortho(coordinate* atom1, coordinate* atom2,
2022-08-30T21:20:33,018         |             ^~~~~~~~~~~~~~~~~
2022-08-30T21:20:33,018   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:613:13: warning: ‘void _calc_angle(float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:20:33,018     613 | static void _calc_angle(coordinate* atom1, coordinate* atom2,
2022-08-30T21:20:33,019         |             ^~~~~~~~~~~
2022-08-30T21:20:33,019   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:591:13: warning: ‘void _calc_bond_distance_triclinic(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:20:33,019     591 | static void _calc_bond_distance_triclinic(coordinate* atom1, coordinate* atom2,
2022-08-30T21:20:33,020         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:20:33,020   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:568:13: warning: ‘void _calc_bond_distance_ortho(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:20:33,020     568 | static void _calc_bond_distance_ortho(coordinate* atom1, coordinate* atom2,
2022-08-30T21:20:33,021         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:20:33,021   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:552:13: warning: ‘void _calc_bond_distance(float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:20:33,021     552 | static void _calc_bond_distance(coordinate* atom1, coordinate* atom2,
2022-08-30T21:20:33,022         |             ^~~~~~~~~~~~~~~~~~~
2022-08-30T21:20:33,022   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:500:13: warning: ‘void _calc_self_distance_array_triclinic(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:20:33,022     500 | static void _calc_self_distance_array_triclinic(coordinate* ref, uint64_t numref,
2022-08-30T21:20:33,023         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:20:33,023   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:467:13: warning: ‘void _calc_self_distance_array_ortho(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:20:33,023     467 | static void _calc_self_distance_array_ortho(coordinate* ref, uint64_t numref,
2022-08-30T21:20:33,024         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:20:33,024   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:443:13: warning: ‘void _calc_self_distance_array(float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:20:33,024     443 | static void _calc_self_distance_array(coordinate* ref, uint64_t numref,
2022-08-30T21:20:33,024         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:20:33,025   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:419:13: warning: ‘void _calc_distance_array_triclinic(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:20:33,025     419 | static void _calc_distance_array_triclinic(coordinate* ref, uint64_t numref,
2022-08-30T21:20:33,025         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:20:33,026   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:394:13: warning: ‘void _calc_distance_array_ortho(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:20:33,026     394 | static void _calc_distance_array_ortho(coordinate* ref, uint64_t numref, coordinate* conf,
2022-08-30T21:20:33,026         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:20:33,027   /tmp/pip-wheel-6i0ugav5/mdanalysis_94bb2df260fb46cbb305dbd00bf36a18/MDAnalysis/lib/include/calc_distances.h:376:13: warning: ‘void _calc_distance_array(float (*)[3], uint64_t, float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2022-08-30T21:20:33,027     376 | static void _calc_distance_array(coordinate* ref, uint64_t numref, coordinate* conf,
2022-08-30T21:20:33,027         |             ^~~~~~~~~~~~~~~~~~~~
2022-08-30T21:21:25,682   In file included from /usr/include/c++/10/vector:72,
2022-08-30T21:21:25,683                    from MDAnalysis/lib/nsgrid.cpp:789:
2022-08-30T21:21:25,683   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2022-08-30T21:21:25,684   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2022-08-30T21:21:25,684     426 |       vector<_Tp, _Alloc>::
2022-08-30T21:21:25,684         |       ^~~~~~~~~~~~~~~~~~~
2022-08-30T21:21:25,770   In file included from /usr/include/c++/10/vector:67,
2022-08-30T21:21:25,771                    from MDAnalysis/lib/nsgrid.cpp:789:
2022-08-30T21:21:25,771   /usr/include/c++/10/bits/stl_vector.h: In function ‘void __pyx_f_10MDAnalysis_3lib_6nsgrid_9NSResults_add_neighbors(__pyx_obj_10MDAnalysis_3lib_6nsgrid_NSResults*, int, int, double)’:
2022-08-30T21:21:25,771   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2022-08-30T21:21:25,772    1198 |    _M_realloc_insert(end(), __x);
2022-08-30T21:21:25,772         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-08-30T21:21:25,859   In file included from /usr/include/c++/10/vector:72,
2022-08-30T21:21:25,860                    from MDAnalysis/lib/nsgrid.cpp:789:
2022-08-30T21:21:25,860   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2022-08-30T21:21:25,861   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2022-08-30T21:21:25,861     426 |       vector<_Tp, _Alloc>::
2022-08-30T21:21:25,861         |       ^~~~~~~~~~~~~~~~~~~
2022-08-30T21:21:26,447   /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* __pyx_f_10MDAnalysis_3lib_6nsgrid___pyx_unpickle_NSResults__set_state(__pyx_obj_10MDAnalysis_3lib_6nsgrid_NSResults*, PyObject*)’:
2022-08-30T21:21:26,447   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2022-08-30T21:21:26,448     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2022-08-30T21:21:26,448         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-08-30T21:21:33,935   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.cpython-39-arm-linux-gnueabihf.so
2022-08-30T21:21:34,735   building 'MDAnalysis.coordinates.timestep' extension
2022-08-30T21:21:34,736   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/coordinates
2022-08-30T21:21:34,738   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/coordinates/timestep.cpp -o build/temp.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.o -ffast-math -O3 -funroll-loops -fsigned-zeros -std=c++11
2022-08-30T21:21:34,810   cc1plus: warning: ‘-fassociative-math’ disabled; other options take precedence
2022-08-30T21:21:35,384   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2022-08-30T21:21:35,384                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-08-30T21:21:35,385                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-08-30T21:21:35,385                    from MDAnalysis/coordinates/timestep.cpp:791:
2022-08-30T21:21:35,385   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-08-30T21:21:35,386      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-08-30T21:21:35,386         |  ^~~~~~~
2022-08-30T21:22:17,895   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.cpython-39-arm-linux-gnueabihf.so
2022-08-30T21:22:19,606   installing to build/bdist.linux-armv7l/wheel
2022-08-30T21:22:19,606   running install
2022-08-30T21:22:19,671   running install_lib
2022-08-30T21:22:20,270   creating build/bdist.linux-armv7l
2022-08-30T21:22:20,272   creating build/bdist.linux-armv7l/wheel
2022-08-30T21:22:20,276   creating build/bdist.linux-armv7l/wheel/MDAnalysis
2022-08-30T21:22:20,279   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/due.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2022-08-30T21:22:20,285   creating build/bdist.linux-armv7l/wheel/MDAnalysis/visualization
2022-08-30T21:22:20,286   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization/streamlines.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/visualization
2022-08-30T21:22:20,292   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/visualization
2022-08-30T21:22:20,296   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization/streamlines_3D.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/visualization
2022-08-30T21:22:20,302   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/units.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2022-08-30T21:22:20,309   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2022-08-30T21:22:20,311   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/distances.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2022-08-30T21:22:20,320   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/pkdtree.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2022-08-30T21:22:20,324   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2022-08-30T21:22:20,402   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2022-08-30T21:22:20,486   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/transformations.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2022-08-30T21:22:20,493   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/mdamath.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2022-08-30T21:22:20,498   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/util.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2022-08-30T21:22:20,506   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/NeighborSearch.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2022-08-30T21:22:20,510   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2022-08-30T21:22:20,513   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/log.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2022-08-30T21:22:20,519   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2022-08-30T21:22:20,521   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2022-08-30T21:22:20,578   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2022-08-30T21:22:20,668   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2022-08-30T21:22:20,671   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2022-08-30T21:22:20,755   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/correlations.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2022-08-30T21:22:20,759   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2022-08-30T21:22:20,785   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2022-08-30T21:22:20,872   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/picklable_file_io.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2022-08-30T21:22:20,876   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2022-08-30T21:22:20,966   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2022-08-30T21:22:20,991   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_transformations.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2022-08-30T21:22:21,010   creating build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2022-08-30T21:22:21,011   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/rotate.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2022-08-30T21:22:21,016   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2022-08-30T21:22:21,020   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/translate.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2022-08-30T21:22:21,024   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/boxdimensions.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2022-08-30T21:22:21,027   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2022-08-30T21:22:21,031   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/fit.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2022-08-30T21:22:21,035   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/positionaveraging.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2022-08-30T21:22:21,039   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/wrap.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2022-08-30T21:22:21,044   creating build/bdist.linux-armv7l/wheel/MDAnalysis/core
2022-08-30T21:22:21,046   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/topologyobjects.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2022-08-30T21:22:21,052   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/groups.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2022-08-30T21:22:21,065   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/topologyattrs.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2022-08-30T21:22:21,075   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/_get_readers.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2022-08-30T21:22:21,079   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/accessors.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2022-08-30T21:22:21,083   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2022-08-30T21:22:21,086   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/universe.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2022-08-30T21:22:21,095   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/selection.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2022-08-30T21:22:21,103   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/topology.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2022-08-30T21:22:21,108   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/authors.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2022-08-30T21:22:21,112   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/version.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2022-08-30T21:22:21,117   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,119   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/gnm.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,124   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/dihedrals.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,129   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/distances.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,134   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy
2022-08-30T21:22:21,136   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy
2022-08-30T21:22:21,140   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy/x3dna.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy
2022-08-30T21:22:21,147   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2022-08-30T21:22:21,149   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data/rama_ref_data.npy -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2022-08-30T21:22:21,158   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data/janin_ref_data.npy -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2022-08-30T21:22:21,164   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2022-08-30T21:22:21,167   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data/filenames.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2022-08-30T21:22:21,171   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/rms.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,177   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/helix_analysis.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,182   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,187   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/align.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,195   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/density.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,202   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/diffusionmap.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,207   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/bat.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,213   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/psa.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,221   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/contacts.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,227   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds
2022-08-30T21:22:21,228   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds
2022-08-30T21:22:21,232   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds
2022-08-30T21:22:21,235   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/pca.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,241   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,244   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/nuclinfo.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,250   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/nucleicacids.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,253   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/msd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,258   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/dielectric.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,262   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/polymer.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,267   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2022-08-30T21:22:21,269   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/covariance.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2022-08-30T21:22:21,273   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/similarity.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2022-08-30T21:22:21,281   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/confdistmatrix.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2022-08-30T21:22:21,286   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2022-08-30T21:22:21,288   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2022-08-30T21:22:21,317   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2022-08-30T21:22:21,322   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/cluster.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2022-08-30T21:22:21,326   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2022-08-30T21:22:21,330   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2022-08-30T21:22:21,335   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2022-08-30T21:22:21,336   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2022-08-30T21:22:21,341   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2022-08-30T21:22:21,344   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2022-08-30T21:22:21,364   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2022-08-30T21:22:21,368   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/bootstrap.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2022-08-30T21:22:21,372   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2022-08-30T21:22:21,387   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2022-08-30T21:22:21,391   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/utils.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2022-08-30T21:22:21,396   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2022-08-30T21:22:21,398   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2022-08-30T21:22:21,403   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2/hole.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2022-08-30T21:22:21,409   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2/templates.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2022-08-30T21:22:21,413   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2/utils.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2022-08-30T21:22:21,419   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/leaflet.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,424   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2022-08-30T21:22:21,426   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2022-08-30T21:22:21,432   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2022-08-30T21:22:21,437   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2022-08-30T21:22:21,445   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2022-08-30T21:22:21,448   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/lineardensity.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,453   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/waterdynamics.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,460   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2022-08-30T21:22:21,465   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2022-08-30T21:22:21,470   creating build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2022-08-30T21:22:21,471   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/ParmEd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2022-08-30T21:22:21,476   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/RDKitParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2022-08-30T21:22:21,480   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2022-08-30T21:22:21,485   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2022-08-30T21:22:21,488   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/OpenMM.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2022-08-30T21:22:21,492   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/OpenMMParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2022-08-30T21:22:21,497   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/RDKit.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2022-08-30T21:22:21,504   creating build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2022-08-30T21:22:21,505   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/jmol.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2022-08-30T21:22:21,509   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2022-08-30T21:22:21,514   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/vmd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2022-08-30T21:22:21,518   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/gromacs.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2022-08-30T21:22:21,522   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/pymol.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2022-08-30T21:22:21,526   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2022-08-30T21:22:21,530   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/charmm.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2022-08-30T21:22:21,535   creating build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2022-08-30T21:22:21,538   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary/core.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2022-08-30T21:22:21,542   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2022-08-30T21:22:21,549   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2022-08-30T21:22:21,554   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary/XVG.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2022-08-30T21:22:21,561   creating build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,563   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/CRD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,569   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/memory.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,575   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TXYZ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,580   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/ParmEd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,584   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/PDBQT.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,589   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/H5MD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,599   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/core.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,604   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/MOL2.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,609   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,617   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/GRO.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,623   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/NAMDBIN.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,628   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/chain.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,634   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/INPCRD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,638   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/DMS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,643   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,705   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/FHIAIMS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,709   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/PQR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,714   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/PDB.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,722   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/GMS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,726   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/GSD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,731   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,737   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/MMTF.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,741   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TRZ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,746   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/DLPoly.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,751   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TRR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,755   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/DCD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,761   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/null.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,765   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/XDR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,770   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/XTC.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,774   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/LAMMPS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,780   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/XYZ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,786   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/chemfiles.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,791   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TRJ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2022-08-30T21:22:21,799   creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,801   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/HoomdXMLParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,805   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/ITPParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,811   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/PQRParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,815   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/core.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,820   creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2022-08-30T21:22:21,822   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2022-08-30T21:22:21,825   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr/obj.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2022-08-30T21:22:21,829   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr/utils.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2022-08-30T21:22:21,835   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr/setting.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2022-08-30T21:22:21,839   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,843   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/TPRParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,847   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/TXYZParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,851   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/PDBParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,856   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/CRDParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,860   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,863   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,868   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/guessers.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,872   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/GMSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,876   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/TOPParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,881   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tables.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,885   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/PSFParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,889   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/PDBQTParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,893   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/MinimalParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,896   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/ExtendedPDBParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,900   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/FHIAIMSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,903   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/XYZParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,907   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/GROParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,911   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/MOL2Parser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,916   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/DLPolyParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,920   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/MMTFParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,924   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/LAMMPSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,929   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/DMSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,933   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/GSDParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2022-08-30T21:22:21,938   creating build/bdist.linux-armv7l/wheel/MDAnalysis/tests
2022-08-30T21:22:21,939   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/tests/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/tests
2022-08-30T21:22:21,943   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/tests/datafiles.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/tests
2022-08-30T21:22:21,946   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/exceptions.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2022-08-30T21:22:21,949   running install_egg_info
2022-08-30T21:22:23,176   running egg_info
2022-08-30T21:22:23,766   writing MDAnalysis.egg-info/PKG-INFO
2022-08-30T21:22:24,326   writing dependency_links to MDAnalysis.egg-info/dependency_links.txt
2022-08-30T21:22:27,116   writing requirements to MDAnalysis.egg-info/requires.txt
2022-08-30T21:22:27,675   writing top-level names to MDAnalysis.egg-info/top_level.txt
2022-08-30T21:22:27,815   reading manifest file 'MDAnalysis.egg-info/SOURCES.txt'
2022-08-30T21:22:27,909   reading manifest template 'MANIFEST.in'
2022-08-30T21:22:28,467   warning: no previously-included files matching 'doc/html/html' found anywhere in distribution
2022-08-30T21:22:28,472   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2022-08-30T21:22:28,478   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2022-08-30T21:22:28,483   warning: no previously-included files matching '*.pyd' found anywhere in distribution
2022-08-30T21:22:28,489   warning: no previously-included files matching '*~' found anywhere in distribution
2022-08-30T21:22:28,493   warning: no previously-included files matching '.git' found anywhere in distribution
2022-08-30T21:22:28,493   adding license file 'LICENSE'
2022-08-30T21:22:28,494   adding license file 'AUTHORS'
2022-08-30T21:22:28,549   writing manifest file 'MDAnalysis.egg-info/SOURCES.txt'
2022-08-30T21:22:28,553   Copying MDAnalysis.egg-info to build/bdist.linux-armv7l/wheel/MDAnalysis-2.3.0-py3.9.egg-info
2022-08-30T21:22:28,580   running install_scripts
2022-08-30T21:22:28,773   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-08-30T21:22:28,775   adding license file "AUTHORS" (matched pattern "AUTHORS*")
2022-08-30T21:22:28,835   creating build/bdist.linux-armv7l/wheel/MDAnalysis-2.3.0.dist-info/WHEEL
2022-08-30T21:22:28,840   creating '/tmp/pip-wheel-5nckrf9y/tmp2vqazk6i/MDAnalysis-2.3.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-08-30T21:22:28,846   adding 'MDAnalysis/__init__.py'
2022-08-30T21:22:28,849   adding 'MDAnalysis/authors.py'
2022-08-30T21:22:28,852   adding 'MDAnalysis/due.py'
2022-08-30T21:22:28,854   adding 'MDAnalysis/exceptions.py'
2022-08-30T21:22:28,859   adding 'MDAnalysis/units.py'
2022-08-30T21:22:28,862   adding 'MDAnalysis/version.py'
2022-08-30T21:22:28,865   adding 'MDAnalysis/analysis/__init__.py'
2022-08-30T21:22:28,883   adding 'MDAnalysis/analysis/align.py'
2022-08-30T21:22:28,891   adding 'MDAnalysis/analysis/base.py'
2022-08-30T21:22:28,898   adding 'MDAnalysis/analysis/bat.py'
2022-08-30T21:22:28,905   adding 'MDAnalysis/analysis/contacts.py'
2022-08-30T21:22:28,917   adding 'MDAnalysis/analysis/density.py'
2022-08-30T21:22:28,921   adding 'MDAnalysis/analysis/dielectric.py'
2022-08-30T21:22:28,926   adding 'MDAnalysis/analysis/diffusionmap.py'
2022-08-30T21:22:28,933   adding 'MDAnalysis/analysis/dihedrals.py'
2022-08-30T21:22:28,937   adding 'MDAnalysis/analysis/distances.py'
2022-08-30T21:22:28,942   adding 'MDAnalysis/analysis/gnm.py'
2022-08-30T21:22:28,949   adding 'MDAnalysis/analysis/helix_analysis.py'
2022-08-30T21:22:28,954   adding 'MDAnalysis/analysis/leaflet.py'
2022-08-30T21:22:28,959   adding 'MDAnalysis/analysis/lineardensity.py'
2022-08-30T21:22:28,964   adding 'MDAnalysis/analysis/msd.py'
2022-08-30T21:22:28,968   adding 'MDAnalysis/analysis/nucleicacids.py'
2022-08-30T21:22:28,974   adding 'MDAnalysis/analysis/nuclinfo.py'
2022-08-30T21:22:28,983   adding 'MDAnalysis/analysis/pca.py'
2022-08-30T21:22:28,988   adding 'MDAnalysis/analysis/polymer.py'
2022-08-30T21:22:29,011   adding 'MDAnalysis/analysis/psa.py'
2022-08-30T21:22:29,019   adding 'MDAnalysis/analysis/rdf.py'
2022-08-30T21:22:29,030   adding 'MDAnalysis/analysis/rms.py'
2022-08-30T21:22:29,041   adding 'MDAnalysis/analysis/waterdynamics.py'
2022-08-30T21:22:29,045   adding 'MDAnalysis/analysis/data/__init__.py'
2022-08-30T21:22:29,048   adding 'MDAnalysis/analysis/data/filenames.py'
2022-08-30T21:22:29,056   adding 'MDAnalysis/analysis/data/janin_ref_data.npy'
2022-08-30T21:22:29,069   adding 'MDAnalysis/analysis/data/rama_ref_data.npy'
2022-08-30T21:22:29,074   adding 'MDAnalysis/analysis/encore/__init__.py'
2022-08-30T21:22:29,077   adding 'MDAnalysis/analysis/encore/bootstrap.py'
2022-08-30T21:22:29,082   adding 'MDAnalysis/analysis/encore/confdistmatrix.py'
2022-08-30T21:22:29,085   adding 'MDAnalysis/analysis/encore/covariance.py'
2022-08-30T21:22:29,172   adding 'MDAnalysis/analysis/encore/cutils.cpython-39-arm-linux-gnueabihf.so'
2022-08-30T21:22:29,191   adding 'MDAnalysis/analysis/encore/similarity.py'
2022-08-30T21:22:29,196   adding 'MDAnalysis/analysis/encore/utils.py'
2022-08-30T21:22:29,201   adding 'MDAnalysis/analysis/encore/clustering/ClusterCollection.py'
2022-08-30T21:22:29,206   adding 'MDAnalysis/analysis/encore/clustering/ClusteringMethod.py'
2022-08-30T21:22:29,208   adding 'MDAnalysis/analysis/encore/clustering/__init__.py'
2022-08-30T21:22:29,469   adding 'MDAnalysis/analysis/encore/clustering/affinityprop.cpython-39-arm-linux-gnueabihf.so'
2022-08-30T21:22:29,483   adding 'MDAnalysis/analysis/encore/clustering/cluster.py'
2022-08-30T21:22:29,487   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py'
2022-08-30T21:22:29,490   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py'
2022-08-30T21:22:29,494   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py'
2022-08-30T21:22:29,658   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-39-arm-linux-gnueabihf.so'
2022-08-30T21:22:29,668   adding 'MDAnalysis/analysis/hbonds/__init__.py'
2022-08-30T21:22:29,670   adding 'MDAnalysis/analysis/hbonds/hbond_autocorrel.py'
2022-08-30T21:22:29,675   adding 'MDAnalysis/analysis/hole2/__init__.py'
2022-08-30T21:22:29,689   adding 'MDAnalysis/analysis/hole2/hole.py'
2022-08-30T21:22:29,693   adding 'MDAnalysis/analysis/hole2/templates.py'
2022-08-30T21:22:29,699   adding 'MDAnalysis/analysis/hole2/utils.py'
2022-08-30T21:22:29,703   adding 'MDAnalysis/analysis/hydrogenbonds/__init__.py'
2022-08-30T21:22:29,712   adding 'MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py'
2022-08-30T21:22:29,719   adding 'MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py'
2022-08-30T21:22:29,742   adding 'MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py'
2022-08-30T21:22:29,747   adding 'MDAnalysis/analysis/legacy/__init__.py'
2022-08-30T21:22:29,756   adding 'MDAnalysis/analysis/legacy/x3dna.py'
2022-08-30T21:22:29,761   adding 'MDAnalysis/auxiliary/XVG.py'
2022-08-30T21:22:29,768   adding 'MDAnalysis/auxiliary/__init__.py'
2022-08-30T21:22:29,779   adding 'MDAnalysis/auxiliary/base.py'
2022-08-30T21:22:29,782   adding 'MDAnalysis/auxiliary/core.py'
2022-08-30T21:22:29,786   adding 'MDAnalysis/converters/OpenMM.py'
2022-08-30T21:22:29,790   adding 'MDAnalysis/converters/OpenMMParser.py'
2022-08-30T21:22:29,794   adding 'MDAnalysis/converters/ParmEd.py'
2022-08-30T21:22:29,798   adding 'MDAnalysis/converters/ParmEdParser.py'
2022-08-30T21:22:29,811   adding 'MDAnalysis/converters/RDKit.py'
2022-08-30T21:22:29,816   adding 'MDAnalysis/converters/RDKitParser.py'
2022-08-30T21:22:29,818   adding 'MDAnalysis/converters/__init__.py'
2022-08-30T21:22:29,823   adding 'MDAnalysis/coordinates/CRD.py'
2022-08-30T21:22:29,829   adding 'MDAnalysis/coordinates/DCD.py'
2022-08-30T21:22:29,833   adding 'MDAnalysis/coordinates/DLPoly.py'
2022-08-30T21:22:29,837   adding 'MDAnalysis/coordinates/DMS.py'
2022-08-30T21:22:29,841   adding 'MDAnalysis/coordinates/FHIAIMS.py'
2022-08-30T21:22:29,845   adding 'MDAnalysis/coordinates/GMS.py'
2022-08-30T21:22:29,851   adding 'MDAnalysis/coordinates/GRO.py'
2022-08-30T21:22:29,855   adding 'MDAnalysis/coordinates/GSD.py'
2022-08-30T21:22:29,873   adding 'MDAnalysis/coordinates/H5MD.py'
2022-08-30T21:22:29,877   adding 'MDAnalysis/coordinates/INPCRD.py'
2022-08-30T21:22:29,884   adding 'MDAnalysis/coordinates/LAMMPS.py'
2022-08-30T21:22:29,887   adding 'MDAnalysis/coordinates/MMTF.py'
2022-08-30T21:22:29,892   adding 'MDAnalysis/coordinates/MOL2.py'
2022-08-30T21:22:29,895   adding 'MDAnalysis/coordinates/NAMDBIN.py'
2022-08-30T21:22:29,912   adding 'MDAnalysis/coordinates/PDB.py'
2022-08-30T21:22:29,918   adding 'MDAnalysis/coordinates/PDBQT.py'
2022-08-30T21:22:29,923   adding 'MDAnalysis/coordinates/PQR.py'
2022-08-30T21:22:29,925   adding 'MDAnalysis/coordinates/ParmEd.py'
2022-08-30T21:22:29,940   adding 'MDAnalysis/coordinates/TRJ.py'
2022-08-30T21:22:29,944   adding 'MDAnalysis/coordinates/TRR.py'
2022-08-30T21:22:29,950   adding 'MDAnalysis/coordinates/TRZ.py'
2022-08-30T21:22:29,953   adding 'MDAnalysis/coordinates/TXYZ.py'
2022-08-30T21:22:29,958   adding 'MDAnalysis/coordinates/XDR.py'
2022-08-30T21:22:29,961   adding 'MDAnalysis/coordinates/XTC.py'
2022-08-30T21:22:29,967   adding 'MDAnalysis/coordinates/XYZ.py'
2022-08-30T21:22:29,977   adding 'MDAnalysis/coordinates/__init__.py'
2022-08-30T21:22:29,994   adding 'MDAnalysis/coordinates/base.py'
2022-08-30T21:22:30,003   adding 'MDAnalysis/coordinates/chain.py'
2022-08-30T21:22:30,010   adding 'MDAnalysis/coordinates/chemfiles.py'
2022-08-30T21:22:30,013   adding 'MDAnalysis/coordinates/core.py'
2022-08-30T21:22:30,020   adding 'MDAnalysis/coordinates/memory.py'
2022-08-30T21:22:30,023   adding 'MDAnalysis/coordinates/null.py'
2022-08-30T21:22:30,579   adding 'MDAnalysis/coordinates/timestep.cpython-39-arm-linux-gnueabihf.so'
2022-08-30T21:22:30,604   adding 'MDAnalysis/core/__init__.py'
2022-08-30T21:22:30,608   adding 'MDAnalysis/core/_get_readers.py'
2022-08-30T21:22:30,612   adding 'MDAnalysis/core/accessors.py'
2022-08-30T21:22:30,662   adding 'MDAnalysis/core/groups.py'
2022-08-30T21:22:30,681   adding 'MDAnalysis/core/selection.py'
2022-08-30T21:22:30,688   adding 'MDAnalysis/core/topology.py'
2022-08-30T21:22:30,711   adding 'MDAnalysis/core/topologyattrs.py'
2022-08-30T21:22:30,722   adding 'MDAnalysis/core/topologyobjects.py'
2022-08-30T21:22:30,741   adding 'MDAnalysis/core/universe.py'
2022-08-30T21:22:30,746   adding 'MDAnalysis/lib/NeighborSearch.py'
2022-08-30T21:22:30,749   adding 'MDAnalysis/lib/__init__.py'
2022-08-30T21:22:31,408   adding 'MDAnalysis/lib/_augment.cpython-39-arm-linux-gnueabihf.so'
2022-08-30T21:22:32,282   adding 'MDAnalysis/lib/_cutil.cpython-39-arm-linux-gnueabihf.so'
2022-08-30T21:22:32,452   adding 'MDAnalysis/lib/_transformations.cpython-39-arm-linux-gnueabihf.so'
2022-08-30T21:22:33,250   adding 'MDAnalysis/lib/c_distances.cpython-39-arm-linux-gnueabihf.so'
2022-08-30T21:22:33,431   adding 'MDAnalysis/lib/c_distances_openmp.cpython-39-arm-linux-gnueabihf.so'
2022-08-30T21:22:33,442   adding 'MDAnalysis/lib/correlations.py'
2022-08-30T21:22:33,456   adding 'MDAnalysis/lib/distances.py'
2022-08-30T21:22:33,462   adding 'MDAnalysis/lib/log.py'
2022-08-30T21:22:33,467   adding 'MDAnalysis/lib/mdamath.py'
2022-08-30T21:22:34,274   adding 'MDAnalysis/lib/nsgrid.cpython-39-arm-linux-gnueabihf.so'
2022-08-30T21:22:34,312   adding 'MDAnalysis/lib/picklable_file_io.py'
2022-08-30T21:22:34,317   adding 'MDAnalysis/lib/pkdtree.py'
2022-08-30T21:22:34,499   adding 'MDAnalysis/lib/qcprot.cpython-39-arm-linux-gnueabihf.so'
2022-08-30T21:22:34,523   adding 'MDAnalysis/lib/transformations.py'
2022-08-30T21:22:34,552   adding 'MDAnalysis/lib/util.py'
2022-08-30T21:22:34,557   adding 'MDAnalysis/lib/formats/__init__.py'
2022-08-30T21:22:35,056   adding 'MDAnalysis/lib/formats/cython_util.cpython-39-arm-linux-gnueabihf.so'
2022-08-30T21:22:36,054   adding 'MDAnalysis/lib/formats/libdcd.cpython-39-arm-linux-gnueabihf.so'
2022-08-30T21:22:37,085   adding 'MDAnalysis/lib/formats/libmdaxdr.cpython-39-arm-linux-gnueabihf.so'
2022-08-30T21:22:37,129   adding 'MDAnalysis/selections/__init__.py'
2022-08-30T21:22:37,134   adding 'MDAnalysis/selections/base.py'
2022-08-30T21:22:37,137   adding 'MDAnalysis/selections/charmm.py'
2022-08-30T21:22:37,140   adding 'MDAnalysis/selections/gromacs.py'
2022-08-30T21:22:37,142   adding 'MDAnalysis/selections/jmol.py'
2022-08-30T21:22:37,145   adding 'MDAnalysis/selections/pymol.py'
2022-08-30T21:22:37,148   adding 'MDAnalysis/selections/vmd.py'
2022-08-30T21:22:37,152   adding 'MDAnalysis/tests/__init__.py'
2022-08-30T21:22:37,155   adding 'MDAnalysis/tests/datafiles.py'
2022-08-30T21:22:37,159   adding 'MDAnalysis/topology/CRDParser.py'
2022-08-30T21:22:37,163   adding 'MDAnalysis/topology/DLPolyParser.py'
2022-08-30T21:22:37,166   adding 'MDAnalysis/topology/DMSParser.py'
2022-08-30T21:22:37,170   adding 'MDAnalysis/topology/ExtendedPDBParser.py'
2022-08-30T21:22:37,173   adding 'MDAnalysis/topology/FHIAIMSParser.py'
2022-08-30T21:22:37,176   adding 'MDAnalysis/topology/GMSParser.py'
2022-08-30T21:22:37,179   adding 'MDAnalysis/topology/GROParser.py'
2022-08-30T21:22:37,183   adding 'MDAnalysis/topology/GSDParser.py'
2022-08-30T21:22:37,186   adding 'MDAnalysis/topology/HoomdXMLParser.py'
2022-08-30T21:22:37,193   adding 'MDAnalysis/topology/ITPParser.py'
2022-08-30T21:22:37,200   adding 'MDAnalysis/topology/LAMMPSParser.py'
2022-08-30T21:22:37,205   adding 'MDAnalysis/topology/MMTFParser.py'
2022-08-30T21:22:37,209   adding 'MDAnalysis/topology/MOL2Parser.py'
2022-08-30T21:22:37,212   adding 'MDAnalysis/topology/MinimalParser.py'
2022-08-30T21:22:37,218   adding 'MDAnalysis/topology/PDBParser.py'
2022-08-30T21:22:37,222   adding 'MDAnalysis/topology/PDBQTParser.py'
2022-08-30T21:22:37,225   adding 'MDAnalysis/topology/PQRParser.py'
2022-08-30T21:22:37,230   adding 'MDAnalysis/topology/PSFParser.py'
2022-08-30T21:22:37,233   adding 'MDAnalysis/topology/ParmEdParser.py'
2022-08-30T21:22:37,240   adding 'MDAnalysis/topology/TOPParser.py'
2022-08-30T21:22:37,244   adding 'MDAnalysis/topology/TPRParser.py'
2022-08-30T21:22:37,248   adding 'MDAnalysis/topology/TXYZParser.py'
2022-08-30T21:22:37,251   adding 'MDAnalysis/topology/XYZParser.py'
2022-08-30T21:22:37,256   adding 'MDAnalysis/topology/__init__.py'
2022-08-30T21:22:37,260   adding 'MDAnalysis/topology/base.py'
2022-08-30T21:22:37,263   adding 'MDAnalysis/topology/core.py'
2022-08-30T21:22:37,269   adding 'MDAnalysis/topology/guessers.py'
2022-08-30T21:22:37,274   adding 'MDAnalysis/topology/tables.py'
2022-08-30T21:22:37,278   adding 'MDAnalysis/topology/tpr/__init__.py'
2022-08-30T21:22:37,281   adding 'MDAnalysis/topology/tpr/obj.py'
2022-08-30T21:22:37,285   adding 'MDAnalysis/topology/tpr/setting.py'
2022-08-30T21:22:37,294   adding 'MDAnalysis/topology/tpr/utils.py'
2022-08-30T21:22:37,299   adding 'MDAnalysis/transformations/__init__.py'
2022-08-30T21:22:37,302   adding 'MDAnalysis/transformations/base.py'
2022-08-30T21:22:37,305   adding 'MDAnalysis/transformations/boxdimensions.py'
2022-08-30T21:22:37,309   adding 'MDAnalysis/transformations/fit.py'
2022-08-30T21:22:37,313   adding 'MDAnalysis/transformations/positionaveraging.py'
2022-08-30T21:22:37,317   adding 'MDAnalysis/transformations/rotate.py'
2022-08-30T21:22:37,321   adding 'MDAnalysis/transformations/translate.py'
2022-08-30T21:22:37,324   adding 'MDAnalysis/transformations/wrap.py'
2022-08-30T21:22:37,327   adding 'MDAnalysis/visualization/__init__.py'
2022-08-30T21:22:37,333   adding 'MDAnalysis/visualization/streamlines.py'
2022-08-30T21:22:37,341   adding 'MDAnalysis/visualization/streamlines_3D.py'
2022-08-30T21:22:37,347   adding 'MDAnalysis-2.3.0.dist-info/AUTHORS'
2022-08-30T21:22:37,356   adding 'MDAnalysis-2.3.0.dist-info/LICENSE'
2022-08-30T21:22:37,359   adding 'MDAnalysis-2.3.0.dist-info/METADATA'
2022-08-30T21:22:37,360   adding 'MDAnalysis-2.3.0.dist-info/WHEEL'
2022-08-30T21:22:37,362   adding 'MDAnalysis-2.3.0.dist-info/top_level.txt'
2022-08-30T21:22:37,369   adding 'MDAnalysis-2.3.0.dist-info/RECORD'
2022-08-30T21:22:37,572   removing build/bdist.linux-armv7l/wheel
2022-08-30T21:22:38,103   Building wheel for mdanalysis (pyproject.toml): finished with status 'done'
2022-08-30T21:22:38,418   Created wheel for mdanalysis: filename=MDAnalysis-2.3.0-cp39-cp39-linux_armv7l.whl size=6298041 sha256=954b2d003fe675d5b27a743a9345ee42bd958991591afd1dee95b8aacf8314d0
2022-08-30T21:22:38,420   Stored in directory: /tmp/pip-ephem-wheel-cache-7dl6xacq/wheels/54/be/86/a664bf6988c629cbed92d1c82b597bcb97c0e7e5e40eac6739
2022-08-30T21:22:38,467 Successfully built mdanalysis
2022-08-30T21:22:38,886 Removed build tracker: '/tmp/pip-build-tracker-1we33zwo'