2022-08-31T15:52:17,316 Created temporary directory: /tmp/pip-ephem-wheel-cache-otmxalrb 2022-08-31T15:52:17,321 Created temporary directory: /tmp/pip-build-tracker-daj7y6f6 2022-08-31T15:52:17,322 Initialized build tracking at /tmp/pip-build-tracker-daj7y6f6 2022-08-31T15:52:17,322 Created build tracker: /tmp/pip-build-tracker-daj7y6f6 2022-08-31T15:52:17,323 Entered build tracker: /tmp/pip-build-tracker-daj7y6f6 2022-08-31T15:52:17,324 Created temporary directory: /tmp/pip-wheel-36j8f12c 2022-08-31T15:52:17,393 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-08-31T15:52:17,402 2 location(s) to search for versions of amp-atomistics: 2022-08-31T15:52:17,402 * https://pypi.org/simple/amp-atomistics/ 2022-08-31T15:52:17,402 * https://www.piwheels.org/simple/amp-atomistics/ 2022-08-31T15:52:17,403 Fetching project page and analyzing links: https://pypi.org/simple/amp-atomistics/ 2022-08-31T15:52:17,404 Getting page https://pypi.org/simple/amp-atomistics/ 2022-08-31T15:52:17,407 Found index url https://pypi.org/simple 2022-08-31T15:52:17,532 Found link https://files.pythonhosted.org/packages/25/21/b65e16734d8e726581f4d8c9c76ad900b61dfd45fe33f00418727b57326b/amp-atomistics-0.6.1.tar.gz#sha256=851d020de24f9e8ddec960f6859c8a42b1f7b7d9a5130d1483796f7ce9f503c8 (from https://pypi.org/simple/amp-atomistics/), version: 0.6.1 2022-08-31T15:52:17,532 Found link https://files.pythonhosted.org/packages/2a/2a/a6a82f32a94dee78a29360920f536536a089ab9a61ef526bce8bd14745e1/amp-atomistics-1.0.tar.gz#sha256=b97927a65abe1e96ed9afe2a85aac64bda2f4935bf5ba6a98efacd7e07edf2b0 (from https://pypi.org/simple/amp-atomistics/), version: 1.0 2022-08-31T15:52:17,533 Fetching project page and analyzing links: https://www.piwheels.org/simple/amp-atomistics/ 2022-08-31T15:52:17,534 Getting page https://www.piwheels.org/simple/amp-atomistics/ 2022-08-31T15:52:17,536 Found index url https://www.piwheels.org/simple 2022-08-31T15:52:17,761 Skipping link: No binaries permitted for amp-atomistics: https://www.piwheels.org/simple/amp-atomistics/amp_atomistics-1.0-cp37-cp37m-linux_armv7l.whl#sha256=d18037c33a19ba5c7cdfbd49324ed8db0d91eb49b20dcd9feb9b84cbf7018a14 (from https://www.piwheels.org/simple/amp-atomistics/) 2022-08-31T15:52:17,762 Skipping link: No binaries permitted for amp-atomistics: https://www.piwheels.org/simple/amp-atomistics/amp_atomistics-1.0-cp37-cp37m-linux_armv6l.whl#sha256=d18037c33a19ba5c7cdfbd49324ed8db0d91eb49b20dcd9feb9b84cbf7018a14 (from https://www.piwheels.org/simple/amp-atomistics/) 2022-08-31T15:52:17,762 Skipping link: No binaries permitted for amp-atomistics: https://www.piwheels.org/simple/amp-atomistics/amp_atomistics-0.6.1-cp39-cp39-linux_armv7l.whl#sha256=7d1f92339e73d8adc0aefce75cc105c464381edcea4ac0c27485244ea37e3a74 (from https://www.piwheels.org/simple/amp-atomistics/) 2022-08-31T15:52:17,763 Skipping link: No binaries permitted for amp-atomistics: https://www.piwheels.org/simple/amp-atomistics/amp_atomistics-0.6.1-cp39-cp39-linux_armv6l.whl#sha256=7d1f92339e73d8adc0aefce75cc105c464381edcea4ac0c27485244ea37e3a74 (from https://www.piwheels.org/simple/amp-atomistics/) 2022-08-31T15:52:17,763 Skipping link: No binaries permitted for amp-atomistics: https://www.piwheels.org/simple/amp-atomistics/amp_atomistics-0.6.1-cp37-cp37m-linux_armv6l.whl#sha256=d85a9e06c69ac145c694ba2e038a07657e56ef2a5623499e529880caf5858ef4 (from https://www.piwheels.org/simple/amp-atomistics/) 2022-08-31T15:52:17,764 Skipping link: No binaries permitted for amp-atomistics: https://www.piwheels.org/simple/amp-atomistics/amp_atomistics-0.6.1-cp37-cp37m-linux_armv7l.whl#sha256=d85a9e06c69ac145c694ba2e038a07657e56ef2a5623499e529880caf5858ef4 (from https://www.piwheels.org/simple/amp-atomistics/) 2022-08-31T15:52:17,764 Skipping link: No binaries permitted for amp-atomistics: https://www.piwheels.org/simple/amp-atomistics/amp_atomistics-0.6.1-cp34-cp34m-linux_armv7l.whl#sha256=934e7405eeacc7a446eff3c519ed4a03ba3df347fe76f1425acdb2040e0f2985 (from https://www.piwheels.org/simple/amp-atomistics/) 2022-08-31T15:52:17,765 Skipping link: No binaries permitted for amp-atomistics: https://www.piwheels.org/simple/amp-atomistics/amp_atomistics-0.6.1-cp34-cp34m-linux_armv6l.whl#sha256=934e7405eeacc7a446eff3c519ed4a03ba3df347fe76f1425acdb2040e0f2985 (from https://www.piwheels.org/simple/amp-atomistics/) 2022-08-31T15:52:17,765 Skipping link: No binaries permitted for amp-atomistics: https://www.piwheels.org/simple/amp-atomistics/amp_atomistics-0.6.1-cp35-cp35m-linux_armv6l.whl#sha256=319fdeb8e2749626a9a22b17382ea52e60738cf8e136652671fa417a5d59eef5 (from https://www.piwheels.org/simple/amp-atomistics/) 2022-08-31T15:52:17,766 Skipping link: No binaries permitted for amp-atomistics: https://www.piwheels.org/simple/amp-atomistics/amp_atomistics-0.6.1-cp35-cp35m-linux_armv7l.whl#sha256=319fdeb8e2749626a9a22b17382ea52e60738cf8e136652671fa417a5d59eef5 (from https://www.piwheels.org/simple/amp-atomistics/) 2022-08-31T15:52:17,767 Skipping link: not a file: https://www.piwheels.org/simple/amp-atomistics/ 2022-08-31T15:52:17,767 Skipping link: not a file: https://pypi.org/simple/amp-atomistics/ 2022-08-31T15:52:17,813 Given no hashes to check 1 links for project 'amp-atomistics': discarding no candidates 2022-08-31T15:52:17,855 Collecting amp-atomistics==1.0 2022-08-31T15:52:17,859 Created temporary directory: /tmp/pip-unpack-1qhk5_dc 2022-08-31T15:52:17,985 Downloading amp-atomistics-1.0.tar.gz (147 kB) 2022-08-31T15:52:18,271 Added amp-atomistics==1.0 from https://files.pythonhosted.org/packages/2a/2a/a6a82f32a94dee78a29360920f536536a089ab9a61ef526bce8bd14745e1/amp-atomistics-1.0.tar.gz#sha256=b97927a65abe1e96ed9afe2a85aac64bda2f4935bf5ba6a98efacd7e07edf2b0 to build tracker '/tmp/pip-build-tracker-daj7y6f6' 2022-08-31T15:52:18,275 Running setup.py (path:/tmp/pip-wheel-36j8f12c/amp-atomistics_0f9d4bec35654504a3ac0d7f948cd9cb/setup.py) egg_info for package amp-atomistics 2022-08-31T15:52:18,276 Created temporary directory: /tmp/pip-pip-egg-info-3tw8n18c 2022-08-31T15:52:18,277 Preparing metadata (setup.py): started 2022-08-31T15:52:18,279 Running command python setup.py egg_info 2022-08-31T15:52:25,600 running egg_info 2022-08-31T15:52:25,608 running build_src 2022-08-31T15:52:25,610 INFO: build_src 2022-08-31T15:52:25,610 INFO: building extension "amp.fmodules" sources 2022-08-31T15:52:25,611 INFO: f2py options: [] 2022-08-31T15:52:25,611 INFO: f2py:> build/src.linux-armv7l-3.9/amp/fmodulesmodule.c 2022-08-31T15:52:25,611 creating build 2022-08-31T15:52:25,612 creating build/src.linux-armv7l-3.9 2022-08-31T15:52:25,613 creating build/src.linux-armv7l-3.9/amp 2022-08-31T15:52:29,756 rmbadname1: Replacing "index" with "index_bn". 2022-08-31T15:52:33,106 Reading fortran codes... 2022-08-31T15:52:33,106 Reading file 'amp/model/neuralnetwork.f90' (format:fix) 2022-08-31T15:52:33,107 Line #17 in amp/model/neuralnetwork.f90:" type:: real_two_d_array " 2022-08-31T15:52:33,107 analyzeline: No name/args pattern found for line. 2022-08-31T15:52:33,107 Line #22 in amp/model/neuralnetwork.f90:" type:: element_parameters " 2022-08-31T15:52:33,108 analyzeline: No name/args pattern found for line. 2022-08-31T15:52:33,108 Line #29 in amp/model/neuralnetwork.f90:" type:: real_one_d_array " 2022-08-31T15:52:33,108 analyzeline: No name/args pattern found for line. 2022-08-31T15:52:33,109 Reading file 'amp/descriptor/gaussian.f90' (format:free) 2022-08-31T15:52:33,109 Reading file 'amp/descriptor/cutoffs.f90' (format:fix) 2022-08-31T15:52:33,109 Reading file 'amp/descriptor/zernike.f90' (format:free) 2022-08-31T15:52:33,109 Reading file 'amp/model.f90' (format:fix) 2022-08-31T15:52:33,110 Line #105 in amp/model.f90:" type:: image_forces " 2022-08-31T15:52:33,110 analyzeline: No name/args pattern found for line. 2022-08-31T15:52:33,110 Line #110 in amp/model.f90:" type:: integer_one_d_array " 2022-08-31T15:52:33,111 analyzeline: No name/args pattern found for line. 2022-08-31T15:52:33,111 Line #115 in amp/model.f90:" type:: embedded_real_one_one_d_array " 2022-08-31T15:52:33,111 analyzeline: No name/args pattern found for line. 2022-08-31T15:52:33,112 Line #120 in amp/model.f90:" type:: embedded_real_one_two_d_array " 2022-08-31T15:52:33,112 analyzeline: No name/args pattern found for line. 2022-08-31T15:52:33,112 Line #125 in amp/model.f90:" type:: embedded_integer_one_one_d_array " 2022-08-31T15:52:33,112 analyzeline: No name/args pattern found for line. 2022-08-31T15:52:33,113 Line #130 in amp/model.f90:" type:: embedded_one_one_two_d_array " 2022-08-31T15:52:33,113 analyzeline: No name/args pattern found for line. 2022-08-31T15:52:33,113 Post-processing... 2022-08-31T15:52:33,114 Block: fmodules 2022-08-31T15:52:33,114 Block: neuralnetwork 2022-08-31T15:52:33,114 Block: unknown_type 2022-08-31T15:52:33,114 Block: unknown_type 2022-08-31T15:52:33,115 Block: unknown_type 2022-08-31T15:52:33,115 Block: calculate_image_energy 2022-08-31T15:52:33,115 Block: calculate_atomic_energy 2022-08-31T15:52:33,115 Block: calculate_force_ 2022-08-31T15:52:33,116 Block: calculate_force 2022-08-31T15:52:33,116 Block: calculate_denergy_dparameters_ 2022-08-31T15:52:33,116 Block: calculate_datomicenergy_dparameters 2022-08-31T15:52:33,117 Block: calculate_dforce_dparameters_ 2022-08-31T15:52:33,117 Block: calculate_dforce_dparameters 2022-08-31T15:52:33,117 Block: calculate_g2 2022-08-31T15:52:33,117 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g2 2022-08-31T15:52:33,118 get_useparameters: no module cutoffs info used by calculate_g2 2022-08-31T15:52:33,118 Block: calculate_g4 2022-08-31T15:52:33,118 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g4 2022-08-31T15:52:33,119 get_useparameters: no module cutoffs info used by calculate_g4 2022-08-31T15:52:33,119 Block: calculate_g5 2022-08-31T15:52:33,119 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g5 2022-08-31T15:52:33,120 get_useparameters: no module cutoffs info used by calculate_g5 2022-08-31T15:52:33,120 Block: calculate_g2_prime 2022-08-31T15:52:33,120 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g2_prime 2022-08-31T15:52:33,120 get_useparameters: no module cutoffs info used by calculate_g2_prime 2022-08-31T15:52:33,121 Block: calculate_g4_prime 2022-08-31T15:52:33,121 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g4_prime 2022-08-31T15:52:33,121 get_useparameters: no module cutoffs info used by calculate_g4_prime 2022-08-31T15:52:33,121 Block: calculate_g5_prime 2022-08-31T15:52:33,122 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g5_prime 2022-08-31T15:52:33,122 get_useparameters: no module cutoffs info used by calculate_g5_prime 2022-08-31T15:52:33,122 Block: cutoffs 2022-08-31T15:52:33,123 Block: cutoff_fxn 2022-08-31T15:52:33,123 Block: cutoff_fxn_prime 2022-08-31T15:52:33,123 Block: calculate_zernike_prime 2022-08-31T15:52:33,123 Block: calculate_z 2022-08-31T15:52:33,124 Block: calculate_z_prime 2022-08-31T15:52:33,124 Block: calculate_q 2022-08-31T15:52:33,124 Block: binomial 2022-08-31T15:52:33,125 Block: check_version 2022-08-31T15:52:33,125 Block: fingerprint_props 2022-08-31T15:52:33,125 Block: model_props 2022-08-31T15:52:33,125 Block: images_props 2022-08-31T15:52:33,126 {} 2022-08-31T15:52:33,126 In: :fmodules:amp/model.f90:calculate_loss:calculate_energy 2022-08-31T15:52:33,126 vars2fortran: No typespec for argument "image_no". 2022-08-31T15:52:33,127 {} 2022-08-31T15:52:33,127 In: :fmodules:amp/model.f90:calculate_loss:calculate_forces 2022-08-31T15:52:33,127 vars2fortran: No typespec for argument "image_no". 2022-08-31T15:52:33,127 {} 2022-08-31T15:52:33,128 In: :fmodules:amp/model.f90:calculate_loss:calculate_denergy_dparameters 2022-08-31T15:52:33,128 vars2fortran: No typespec for argument "image_no". 2022-08-31T15:52:33,128 {} 2022-08-31T15:52:33,128 In: :fmodules:amp/model.f90:calculate_loss:calculate_numerical_denergy_dparameters 2022-08-31T15:52:33,129 vars2fortran: No typespec for argument "image_no". 2022-08-31T15:52:33,129 {} 2022-08-31T15:52:33,129 In: :fmodules:amp/model.f90:calculate_loss:calculate_dforces_dparameters 2022-08-31T15:52:33,130 vars2fortran: No typespec for argument "image_no". 2022-08-31T15:52:33,130 {} 2022-08-31T15:52:33,130 In: :fmodules:amp/model.f90:calculate_loss:calculate_numerical_dforces_dparameters 2022-08-31T15:52:33,130 vars2fortran: No typespec for argument "image_no". 2022-08-31T15:52:33,131 Block: calculate_loss 2022-08-31T15:52:33,131 Block: unknown_type 2022-08-31T15:52:33,131 Block: unknown_type 2022-08-31T15:52:33,132 Block: unknown_type 2022-08-31T15:52:33,132 Block: unknown_type 2022-08-31T15:52:33,132 Block: unknown_type 2022-08-31T15:52:33,132 Block: unknown_type 2022-08-31T15:52:33,133 Block: deallocate_variables 2022-08-31T15:52:33,133 Post-processing (stage 2)... 2022-08-31T15:52:33,133 Block: fmodules 2022-08-31T15:52:33,134 Block: unknown_interface 2022-08-31T15:52:33,134 Block: neuralnetwork 2022-08-31T15:52:33,134 Block: unknown_type 2022-08-31T15:52:33,134 Block: unknown_type 2022-08-31T15:52:33,135 Block: unknown_type 2022-08-31T15:52:33,135 Block: calculate_image_energy 2022-08-31T15:52:33,135 Block: calculate_atomic_energy 2022-08-31T15:52:33,135 Block: calculate_force_ 2022-08-31T15:52:33,136 Block: calculate_force 2022-08-31T15:52:33,136 Block: calculate_denergy_dparameters_ 2022-08-31T15:52:33,136 Block: calculate_datomicenergy_dparameters 2022-08-31T15:52:33,137 Block: calculate_dforce_dparameters_ 2022-08-31T15:52:33,137 Block: calculate_dforce_dparameters 2022-08-31T15:52:33,137 Block: calculate_g2 2022-08-31T15:52:33,138 Block: calculate_g4 2022-08-31T15:52:33,138 Block: calculate_g5 2022-08-31T15:52:33,138 Block: calculate_g2_prime 2022-08-31T15:52:33,139 Block: calculate_g4_prime 2022-08-31T15:52:33,139 Block: calculate_g5_prime 2022-08-31T15:52:33,140 Block: cutoffs 2022-08-31T15:52:33,140 Block: cutoff_fxn 2022-08-31T15:52:33,140 Block: cutoff_fxn_prime 2022-08-31T15:52:33,141 Block: calculate_zernike_prime 2022-08-31T15:52:33,141 Block: calculate_z 2022-08-31T15:52:33,141 Block: calculate_z_prime 2022-08-31T15:52:33,141 Block: calculate_q 2022-08-31T15:52:33,142 Block: binomial 2022-08-31T15:52:33,142 Block: check_version 2022-08-31T15:52:33,142 Block: fingerprint_props 2022-08-31T15:52:33,143 Block: model_props 2022-08-31T15:52:33,143 Block: images_props 2022-08-31T15:52:33,143 Block: calculate_loss 2022-08-31T15:52:33,143 Block: unknown_type 2022-08-31T15:52:33,144 Block: unknown_type 2022-08-31T15:52:33,144 Block: unknown_type 2022-08-31T15:52:33,144 Block: unknown_type 2022-08-31T15:52:33,145 Block: unknown_type 2022-08-31T15:52:33,145 Block: unknown_type 2022-08-31T15:52:33,145 Block: deallocate_variables 2022-08-31T15:52:33,145 Building modules... 2022-08-31T15:52:33,146 Building module "fmodules"... 2022-08-31T15:52:33,146 Constructing wrapper function "calculate_g2"... 2022-08-31T15:52:33,146 ridge = calculate_g2(neighbornumbers,neighborpositions,g_number,g_eta,rc,offset,cutofffn_code,ri,[p_gamma]) 2022-08-31T15:52:33,146 Constructing wrapper function "calculate_g4"... 2022-08-31T15:52:33,147 ridge = calculate_g4(neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn_code,ri,[p_gamma]) 2022-08-31T15:52:33,147 Constructing wrapper function "calculate_g5"... 2022-08-31T15:52:33,147 ridge = calculate_g5(neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn_code,ri,[p_gamma]) 2022-08-31T15:52:33,148 Constructing wrapper function "calculate_g2_prime"... 2022-08-31T15:52:33,148 ridge = calculate_g2_prime(neighborindices,neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn_code,i,ri,m,l,offset,[p_gamma]) 2022-08-31T15:52:33,148 Constructing wrapper function "calculate_g4_prime"... 2022-08-31T15:52:33,149 ridge = calculate_g4_prime(neighborindices,neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn_code,i,ri,m,l,[p_gamma]) 2022-08-31T15:52:33,149 Constructing wrapper function "calculate_g5_prime"... 2022-08-31T15:52:33,149 ridge = calculate_g5_prime(neighborindices,neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn_code,i,ri,m,l,[p_gamma]) 2022-08-31T15:52:33,149 Constructing wrapper function "calculate_zernike_prime"... 2022-08-31T15:52:33,150 norm_prime = calculate_zernike_prime(n,l,n_indices,numbers,rs,g_numbers,cutoff,indexx,home,p,q,factorial,cutofffn_code,[n_length,fac_length,p_gamma]) 2022-08-31T15:52:33,150 Constructing wrapper function "calculate_z"... 2022-08-31T15:52:33,150 output = calculate_z(n,l,m,x,y,z,factorial,[length]) 2022-08-31T15:52:33,151 Constructing wrapper function "calculate_z_prime"... 2022-08-31T15:52:33,151 output = calculate_z_prime(n,l,m,x,y,z,p,factorial,[length]) 2022-08-31T15:52:33,151 Constructing wrapper function "calculate_q"... 2022-08-31T15:52:33,151 output = calculate_q(nu,k,l,factorial,[length]) 2022-08-31T15:52:33,152 Constructing wrapper function "binomial"... 2022-08-31T15:52:33,152 output = binomial(n,k,factorial,[length]) 2022-08-31T15:52:33,152 Constructing wrapper function "check_version"... 2022-08-31T15:52:33,152 warning = check_version(version) 2022-08-31T15:52:33,153 Constructing wrapper function "calculate_loss"... 2022-08-31T15:52:33,153 loss,dloss_dparameters,energyloss,forceloss,energy_maxresid,force_maxresid = calculate_loss(parameters,overfit_mask,lossprime,[num_parameters]) 2022-08-31T15:52:33,153 Constructing wrapper function "deallocate_variables"... 2022-08-31T15:52:33,154 deallocate_variables() 2022-08-31T15:52:33,154 Constructing F90 module support for "neuralnetwork"... 2022-08-31T15:52:33,154 Variables: min_fingerprints max_fingerprints no_layers_of_elements no_nodes_of_elements activation_signal 2022-08-31T15:52:33,154 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:33,155 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:33,155 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:33,155 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:33,155 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:33,156 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:33,156 f90mod_rules.buildhooks: skipping type unknown_type 2022-08-31T15:52:33,156 f90mod_rules.buildhooks: skipping type unknown_type 2022-08-31T15:52:33,157 f90mod_rules.buildhooks: skipping type unknown_type 2022-08-31T15:52:33,157 Creating wrapper for Fortran function "calculate_image_energy"("calculate_image_energy")... 2022-08-31T15:52:34,137 Constructing wrapper function "neuralnetwork.calculate_image_energy"... 2022-08-31T15:52:34,138 calculate_image_energy = calculate_image_energy(inputs,parameters,[num_inputs,num_parameters]) 2022-08-31T15:52:34,138 Creating wrapper for Fortran function "calculate_atomic_energy"("calculate_atomic_energy")... 2022-08-31T15:52:34,138 Constructing wrapper function "neuralnetwork.calculate_atomic_energy"... 2022-08-31T15:52:34,139 calculate_atomic_energy = calculate_atomic_energy(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) 2022-08-31T15:52:34,139 Creating wrapper for Fortran function "calculate_force_"("calculate_force_")... 2022-08-31T15:52:34,139 Constructing wrapper function "neuralnetwork.calculate_force_"... 2022-08-31T15:52:34,139 calculate_force_ = calculate_force_(inputs,inputs_,parameters,[num_inputs,num_parameters]) 2022-08-31T15:52:34,140 Creating wrapper for Fortran function "calculate_force"("calculate_force")... 2022-08-31T15:52:34,140 Constructing wrapper function "neuralnetwork.calculate_force"... 2022-08-31T15:52:34,140 calculate_force = calculate_force(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) 2022-08-31T15:52:34,141 Creating wrapper for Fortran function "calculate_denergy_dparameters_"("calculate_denergy_dparameters_")... 2022-08-31T15:52:34,141 Constructing wrapper function "neuralnetwork.calculate_denergy_dparameters_"... 2022-08-31T15:52:34,141 calculate_denergy_dparameters_ = calculate_denergy_dparameters_(inputs,parameters,[num_inputs,num_parameters]) 2022-08-31T15:52:34,141 Creating wrapper for Fortran function "calculate_datomicenergy_dparameters"("calculate_datomicenergy_dparameters")... 2022-08-31T15:52:34,142 Constructing wrapper function "neuralnetwork.calculate_datomicenergy_dparameters"... 2022-08-31T15:52:34,142 calculate_datomicenergy_dparameters = calculate_datomicenergy_dparameters(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) 2022-08-31T15:52:34,142 Creating wrapper for Fortran function "calculate_dforce_dparameters_"("calculate_dforce_dparameters_")... 2022-08-31T15:52:34,143 Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters_"... 2022-08-31T15:52:34,143 calculate_dforce_dparameters_ = calculate_dforce_dparameters_(inputs,inputs_,parameters,[num_inputs,num_parameters]) 2022-08-31T15:52:34,143 Creating wrapper for Fortran function "calculate_dforce_dparameters"("calculate_dforce_dparameters")... 2022-08-31T15:52:34,143 Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters"... 2022-08-31T15:52:34,144 calculate_dforce_dparameters = calculate_dforce_dparameters(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) 2022-08-31T15:52:34,144 Constructing F90 module support for "cutoffs"... 2022-08-31T15:52:34,144 Creating wrapper for Fortran function "cutoff_fxn"("cutoff_fxn")... 2022-08-31T15:52:34,144 Constructing wrapper function "cutoffs.cutoff_fxn"... 2022-08-31T15:52:34,145 cutoff_fxn = cutoff_fxn(r,rc,cutofffn_code,[p_gamma]) 2022-08-31T15:52:34,145 Creating wrapper for Fortran function "cutoff_fxn_prime"("cutoff_fxn_prime")... 2022-08-31T15:52:34,145 Constructing wrapper function "cutoffs.cutoff_fxn_prime"... 2022-08-31T15:52:34,146 cutoff_fxn_prime = cutoff_fxn_prime(r,rc,cutofffn_code,[p_gamma]) 2022-08-31T15:52:34,146 Constructing F90 module support for "fingerprint_props"... 2022-08-31T15:52:34,146 Variables: num_fingerprints_of_elements raveled_fingerprints raveled_fingerprintprimes 2022-08-31T15:52:34,146 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:34,147 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:34,147 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:34,147 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:34,147 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:34,148 Constructing F90 module support for "model_props"... 2022-08-31T15:52:34,148 Variables: mode_signal train_forces energy_coefficient force_coefficient overfit numericprime d 2022-08-31T15:52:34,148 Constructing F90 module support for "images_props"... 2022-08-31T15:52:34,149 Variables: num_images num_elements elements_numbers num_images_atoms atomic_numbers num_neighbors raveled_neighborlists is_nft nft_indices actual_energies image_weights actual_forces num_atoms atomic_positions 2022-08-31T15:52:34,149 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:34,149 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:34,150 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:34,150 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:34,150 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:34,150 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:34,151 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:34,151 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:34,151 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:34,152 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:34,152 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:34,152 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:34,152 getarrdims:warning: assumed shape array, using 0 instead of ':' 2022-08-31T15:52:34,153 Wrote C/API module "fmodules" to file "build/src.linux-armv7l-3.9/amp/fmodulesmodule.c" 2022-08-31T15:52:34,153 Fortran 90 wrappers are saved to "build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90" 2022-08-31T15:52:34,153 INFO: adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amp/fortranobject.c' to sources. 2022-08-31T15:52:34,154 INFO: adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amp' to include_dirs. 2022-08-31T15:52:34,154 creating build/src.linux-armv7l-3.9/build 2022-08-31T15:52:34,154 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2022-08-31T15:52:34,155 creating build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amp 2022-08-31T15:52:34,155 copying /usr/local/lib/python3.9/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amp 2022-08-31T15:52:34,166 copying /usr/local/lib/python3.9/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amp 2022-08-31T15:52:34,171 INFO: adding 'build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90' to sources. 2022-08-31T15:52:34,172 INFO: build_src: building npy-pkg config files 2022-08-31T15:52:34,173 /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-08-31T15:52:34,173 warnings.warn( 2022-08-31T15:52:34,228 creating /tmp/pip-pip-egg-info-3tw8n18c/amp_atomistics.egg-info 2022-08-31T15:52:34,913 writing /tmp/pip-pip-egg-info-3tw8n18c/amp_atomistics.egg-info/PKG-INFO 2022-08-31T15:52:35,472 writing dependency_links to /tmp/pip-pip-egg-info-3tw8n18c/amp_atomistics.egg-info/dependency_links.txt 2022-08-31T15:52:38,356 writing requirements to /tmp/pip-pip-egg-info-3tw8n18c/amp_atomistics.egg-info/requires.txt 2022-08-31T15:52:38,914 writing top-level names to /tmp/pip-pip-egg-info-3tw8n18c/amp_atomistics.egg-info/top_level.txt 2022-08-31T15:52:38,916 writing manifest file '/tmp/pip-pip-egg-info-3tw8n18c/amp_atomistics.egg-info/SOURCES.txt' 2022-08-31T15:52:38,956 /usr/local/lib/python3.9/dist-packages/setuptools/command/egg_info.py:633: SetuptoolsDeprecationWarning: Custom 'build_py' does not implement 'get_data_files_without_manifest'. 2022-08-31T15:52:38,956 Please extend command classes from setuptools instead of distutils. 2022-08-31T15:52:38,957 warnings.warn( 2022-08-31T15:52:39,077 reading manifest file '/tmp/pip-pip-egg-info-3tw8n18c/amp_atomistics.egg-info/SOURCES.txt' 2022-08-31T15:52:39,086 writing manifest file '/tmp/pip-pip-egg-info-3tw8n18c/amp_atomistics.egg-info/SOURCES.txt' 2022-08-31T15:52:39,414 Preparing metadata (setup.py): finished with status 'done' 2022-08-31T15:52:39,424 Source in /tmp/pip-wheel-36j8f12c/amp-atomistics_0f9d4bec35654504a3ac0d7f948cd9cb has version 1.0, which satisfies requirement amp-atomistics==1.0 from https://files.pythonhosted.org/packages/2a/2a/a6a82f32a94dee78a29360920f536536a089ab9a61ef526bce8bd14745e1/amp-atomistics-1.0.tar.gz#sha256=b97927a65abe1e96ed9afe2a85aac64bda2f4935bf5ba6a98efacd7e07edf2b0 2022-08-31T15:52:39,426 Removed amp-atomistics==1.0 from https://files.pythonhosted.org/packages/2a/2a/a6a82f32a94dee78a29360920f536536a089ab9a61ef526bce8bd14745e1/amp-atomistics-1.0.tar.gz#sha256=b97927a65abe1e96ed9afe2a85aac64bda2f4935bf5ba6a98efacd7e07edf2b0 from build tracker '/tmp/pip-build-tracker-daj7y6f6' 2022-08-31T15:52:39,435 Created temporary directory: /tmp/pip-unpack-3ysk5141 2022-08-31T15:52:39,436 Building wheels for collected packages: amp-atomistics 2022-08-31T15:52:39,445 Created temporary directory: /tmp/pip-wheel-ukuhudfn 2022-08-31T15:52:39,446 Building wheel for amp-atomistics (setup.py): started 2022-08-31T15:52:39,448 Destination directory: /tmp/pip-wheel-ukuhudfn 2022-08-31T15:52:39,449 Running command python setup.py bdist_wheel 2022-08-31T15:52:46,505 running bdist_wheel 2022-08-31T15:52:46,625 running build 2022-08-31T15:52:46,625 running config_cc 2022-08-31T15:52:46,626 INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options 2022-08-31T15:52:46,626 running config_fc 2022-08-31T15:52:46,626 INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options 2022-08-31T15:52:46,627 running build_src 2022-08-31T15:52:46,627 INFO: build_src 2022-08-31T15:52:46,627 INFO: building extension "amp.fmodules" sources 2022-08-31T15:52:46,628 INFO: f2py options: [] 2022-08-31T15:52:46,628 INFO: adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amp/fortranobject.c' to sources. 2022-08-31T15:52:46,629 INFO: adding 'build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amp' to include_dirs. 2022-08-31T15:52:46,873 INFO: adding 'build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90' to sources. 2022-08-31T15:52:46,873 INFO: build_src: building npy-pkg config files 2022-08-31T15:52:46,875 /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-08-31T15:52:46,875 warnings.warn( 2022-08-31T15:52:46,930 running build_py 2022-08-31T15:52:46,935 creating build/lib.linux-armv7l-cpython-39 2022-08-31T15:52:46,935 creating build/lib.linux-armv7l-cpython-39/amp 2022-08-31T15:52:46,938 copying amp/__init__.py -> build/lib.linux-armv7l-cpython-39/amp 2022-08-31T15:52:46,944 copying amp/convert.py -> build/lib.linux-armv7l-cpython-39/amp 2022-08-31T15:52:46,951 copying amp/utilities.py -> build/lib.linux-armv7l-cpython-39/amp 2022-08-31T15:52:46,958 copying amp/analysis.py -> build/lib.linux-armv7l-cpython-39/amp 2022-08-31T15:52:46,967 creating build/lib.linux-armv7l-cpython-39/amp/descriptor 2022-08-31T15:52:46,969 copying amp/descriptor/example.py -> build/lib.linux-armv7l-cpython-39/amp/descriptor 2022-08-31T15:52:46,975 copying amp/descriptor/gaussian.py -> build/lib.linux-armv7l-cpython-39/amp/descriptor 2022-08-31T15:52:46,983 copying amp/descriptor/__init__.py -> build/lib.linux-armv7l-cpython-39/amp/descriptor 2022-08-31T15:52:46,987 copying amp/descriptor/zernike.py -> build/lib.linux-armv7l-cpython-39/amp/descriptor 2022-08-31T15:52:46,994 copying amp/descriptor/cutoffs.py -> build/lib.linux-armv7l-cpython-39/amp/descriptor 2022-08-31T15:52:46,999 copying amp/descriptor/analysis.py -> build/lib.linux-armv7l-cpython-39/amp/descriptor 2022-08-31T15:52:47,003 copying amp/descriptor/bispectrum.py -> build/lib.linux-armv7l-cpython-39/amp/descriptor 2022-08-31T15:52:47,010 creating build/lib.linux-armv7l-cpython-39/amp/regression 2022-08-31T15:52:47,012 copying amp/regression/__init__.py -> build/lib.linux-armv7l-cpython-39/amp/regression 2022-08-31T15:52:47,019 creating build/lib.linux-armv7l-cpython-39/amp/model 2022-08-31T15:52:47,022 copying amp/model/neuralnetwork.py -> build/lib.linux-armv7l-cpython-39/amp/model 2022-08-31T15:52:47,031 copying amp/model/__main__.py -> build/lib.linux-armv7l-cpython-39/amp/model 2022-08-31T15:52:47,035 copying amp/model/kernelridge.py -> build/lib.linux-armv7l-cpython-39/amp/model 2022-08-31T15:52:47,046 copying amp/model/__init__.py -> build/lib.linux-armv7l-cpython-39/amp/model 2022-08-31T15:52:47,053 copying amp/model/tflow.py -> build/lib.linux-armv7l-cpython-39/amp/model 2022-08-31T15:52:47,063 creating build/lib.linux-armv7l-cpython-39/amp/stats 2022-08-31T15:52:47,066 copying amp/stats/bootstrap.py -> build/lib.linux-armv7l-cpython-39/amp/stats 2022-08-31T15:52:47,072 copying amp/stats/__init__.py -> build/lib.linux-armv7l-cpython-39/amp/stats 2022-08-31T15:52:47,075 copying amp/VERSION -> build/lib.linux-armv7l-cpython-39/amp 2022-08-31T15:52:47,085 running build_ext 2022-08-31T15:52:47,108 INFO: customize UnixCCompiler 2022-08-31T15:52:47,112 INFO: customize UnixCCompiler using build_ext 2022-08-31T15:52:47,455 INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-march=native) 2022-08-31T15:52:47,456 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-08-31T15:52:47,459 creating /tmp/tmpm3_3swcs/usr 2022-08-31T15:52:47,461 creating /tmp/tmpm3_3swcs/usr/local 2022-08-31T15:52:47,463 creating /tmp/tmpm3_3swcs/usr/local/lib 2022-08-31T15:52:47,464 creating /tmp/tmpm3_3swcs/usr/local/lib/python3.9 2022-08-31T15:52:47,466 creating /tmp/tmpm3_3swcs/usr/local/lib/python3.9/dist-packages 2022-08-31T15:52:47,468 creating /tmp/tmpm3_3swcs/usr/local/lib/python3.9/dist-packages/numpy 2022-08-31T15:52:47,470 creating /tmp/tmpm3_3swcs/usr/local/lib/python3.9/dist-packages/numpy/distutils 2022-08-31T15:52:47,472 creating /tmp/tmpm3_3swcs/usr/local/lib/python3.9/dist-packages/numpy/distutils/checks 2022-08-31T15:52:47,474 INFO: compile options: '-I/usr/include/python3.9 -c' 2022-08-31T15:52:47,474 extra options: '-march=native' 2022-08-31T15:52:47,690 INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-O3) 2022-08-31T15:52:47,691 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-08-31T15:52:47,693 INFO: compile options: '-I/usr/include/python3.9 -c' 2022-08-31T15:52:47,693 extra options: '-O3' 2022-08-31T15:52:47,901 INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-Werror) 2022-08-31T15:52:47,902 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-08-31T15:52:47,904 INFO: compile options: '-I/usr/include/python3.9 -c' 2022-08-31T15:52:47,904 extra options: '-Werror' 2022-08-31T15:52:48,104 INFO: CCompilerOpt.__init__[1709] : check requested baseline 2022-08-31T15:52:48,129 INFO: CCompilerOpt.__init__[1718] : check requested dispatch-able features 2022-08-31T15:52:48,156 INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-mfpu=neon) 2022-08-31T15:52:48,157 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-08-31T15:52:48,159 INFO: compile options: '-I/usr/include/python3.9 -c' 2022-08-31T15:52:48,159 extra options: '-mfpu=neon' 2022-08-31T15:52:48,365 INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2022-08-31T15:52:48,366 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-08-31T15:52:48,368 INFO: compile options: '-I/usr/include/python3.9 -c' 2022-08-31T15:52:48,368 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee' 2022-08-31T15:52:48,580 INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-mfpu=neon-vfpv4) 2022-08-31T15:52:48,581 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-08-31T15:52:48,583 INFO: compile options: '-I/usr/include/python3.9 -c' 2022-08-31T15:52:48,583 extra options: '-mfpu=neon-vfpv4' 2022-08-31T15:52:48,785 INFO: CCompilerOpt.feature_test[1474] : testing feature 'NEON_VFPV4' with flags (-mfp16-format=ieee -mfpu=neon-vfpv4) 2022-08-31T15:52:48,787 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-08-31T15:52:48,788 INFO: compile options: '-I/usr/include/python3.9 -c' 2022-08-31T15:52:48,789 extra options: '-mfp16-format=ieee -mfpu=neon-vfpv4 -Werror' 2022-08-31T15:52:49,809 INFO: CCompilerOpt.feature_test[1474] : testing feature 'NEON' with flags (-mfpu=neon) 2022-08-31T15:52:49,811 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-08-31T15:52:49,812 INFO: compile options: '-I/usr/include/python3.9 -c' 2022-08-31T15:52:49,812 extra options: '-mfpu=neon -Werror' 2022-08-31T15:52:50,712 INFO: CCompilerOpt.feature_test[1474] : testing feature 'NEON_FP16' with flags (-mfpu=neon-fp16 -mfp16-format=ieee) 2022-08-31T15:52:50,713 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-08-31T15:52:50,714 INFO: compile options: '-I/usr/include/python3.9 -c' 2022-08-31T15:52:50,715 extra options: '-mfpu=neon-fp16 -mfp16-format=ieee -Werror' 2022-08-31T15:52:51,685 INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-mfpu=neon-fp-armv8 -march=armv8-a+simd) 2022-08-31T15:52:51,686 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-08-31T15:52:51,687 INFO: compile options: '-I/usr/include/python3.9 -c' 2022-08-31T15:52:51,688 extra options: '-mfpu=neon-fp-armv8 -march=armv8-a+simd' 2022-08-31T15:52:51,889 INFO: CCompilerOpt.feature_test[1474] : testing feature 'ASIMD' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd) 2022-08-31T15:52:51,890 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-08-31T15:52:51,891 INFO: compile options: '-I/usr/include/python3.9 -c' 2022-08-31T15:52:51,892 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd -Werror' 2022-08-31T15:52:52,939 INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-march=armv8.2-a+fp16) 2022-08-31T15:52:52,940 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-08-31T15:52:52,941 INFO: compile options: '-I/usr/include/python3.9 -c' 2022-08-31T15:52:52,941 extra options: '-march=armv8.2-a+fp16' 2022-08-31T15:52:53,145 INFO: CCompilerOpt.feature_test[1474] : testing feature 'ASIMDHP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16) 2022-08-31T15:52:53,147 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-08-31T15:52:53,148 INFO: compile options: '-I/usr/include/python3.9 -c' 2022-08-31T15:52:53,148 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16 -Werror' 2022-08-31T15:52:54,237 INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-march=armv8.2-a+fp16fml) 2022-08-31T15:52:54,238 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-08-31T15:52:54,239 INFO: compile options: '-I/usr/include/python3.9 -c' 2022-08-31T15:52:54,239 extra options: '-march=armv8.2-a+fp16fml' 2022-08-31T15:52:54,441 INFO: CCompilerOpt.feature_test[1474] : testing feature 'ASIMDFHM' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml) 2022-08-31T15:52:54,442 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-08-31T15:52:54,443 INFO: compile options: '-I/usr/include/python3.9 -c' 2022-08-31T15:52:54,444 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror' 2022-08-31T15:52:55,476 WARN: CCompilerOpt.dist_test[590] : CCompilerOpt._dist_test_spawn[724] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c /usr/local/lib/python3.9/dist-packages/numpy/distutils/checks/cpu_asimdfhm.c -o /tmp/tmpm3_3swcs/usr/local/lib/python3.9/dist-packages/numpy/distutils/checks/cpu_asimdfhm.o -MMD -MF /tmp/tmpm3_3swcs/usr/local/lib/python3.9/dist-packages/numpy/distutils/checks/cpu_asimdfhm.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror) failed with exit status 1 output -> 2022-08-31T15:52:55,477 /usr/local/lib/python3.9/dist-packages/numpy/distutils/checks/cpu_asimdfhm.c: In function ‘main’: 2022-08-31T15:52:55,477 /usr/local/lib/python3.9/dist-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: implicit declaration of function ‘vfmlal_low_u32’; did you mean ‘vfmlal_low_f16’? [-Werror=implicit-function-declaration] 2022-08-31T15:52:55,478 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2022-08-31T15:52:55,478 | ^~~~~~~~~~~~~~ 2022-08-31T15:52:55,478 | vfmlal_low_f16 2022-08-31T15:52:55,479 /usr/local/lib/python3.9/dist-packages/numpy/distutils/checks/cpu_asimdfhm.c:13:35: error: incompatible type for argument 1 of ‘vget_lane_f32’ 2022-08-31T15:52:55,479 13 | int ret = (int)vget_lane_f32(vfmlal_low_u32(vlf, vlhp, vlhp), 0); 2022-08-31T15:52:55,479 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-08-31T15:52:55,480 | | 2022-08-31T15:52:55,480 | int 2022-08-31T15:52:55,480 In file included from /usr/local/lib/python3.9/dist-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2022-08-31T15:52:55,480 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6171:28: note: expected ‘float32x2_t’ but argument is of type ‘int’ 2022-08-31T15:52:55,481 6171 | vget_lane_f32 (float32x2_t __a, const int __b) 2022-08-31T15:52:55,481 | ~~~~~~~~~~~~^~~ 2022-08-31T15:52:55,482 /usr/local/lib/python3.9/dist-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: implicit declaration of function ‘vfmlslq_high_u32’; did you mean ‘vfmlslq_high_f16’? [-Werror=implicit-function-declaration] 2022-08-31T15:52:55,482 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2022-08-31T15:52:55,482 | ^~~~~~~~~~~~~~~~ 2022-08-31T15:52:55,483 | vfmlslq_high_f16 2022-08-31T15:52:55,483 /usr/local/lib/python3.9/dist-packages/numpy/distutils/checks/cpu_asimdfhm.c:14:36: error: incompatible type for argument 1 of ‘vgetq_lane_f32’ 2022-08-31T15:52:55,483 14 | ret += (int)vgetq_lane_f32(vfmlslq_high_u32(vf, vhp, vhp), 0); 2022-08-31T15:52:55,484 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-08-31T15:52:55,484 | | 2022-08-31T15:52:55,484 | int 2022-08-31T15:52:55,484 In file included from /usr/local/lib/python3.9/dist-packages/numpy/distutils/checks/cpu_asimdfhm.c:4: 2022-08-31T15:52:55,485 /usr/lib/gcc/arm-linux-gnueabihf/10/include/arm_neon.h:6269:29: note: expected ‘float32x4_t’ but argument is of type ‘int’ 2022-08-31T15:52:55,485 6269 | vgetq_lane_f32 (float32x4_t __a, const int __b) 2022-08-31T15:52:55,485 | ~~~~~~~~~~~~^~~ 2022-08-31T15:52:55,486 cc1: all warnings being treated as errors 2022-08-31T15:52:55,501 WARN: CCompilerOpt.feature_test[1490] : testing failed 2022-08-31T15:52:55,527 INFO: CCompilerOpt.cc_test_flags[1021] : testing flags (-march=armv8.2-a+dotprod) 2022-08-31T15:52:55,528 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-08-31T15:52:55,529 INFO: compile options: '-I/usr/include/python3.9 -c' 2022-08-31T15:52:55,529 extra options: '-march=armv8.2-a+dotprod' 2022-08-31T15:52:55,731 INFO: CCompilerOpt.feature_test[1474] : testing feature 'ASIMDDP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod) 2022-08-31T15:52:55,732 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-08-31T15:52:55,733 INFO: compile options: '-I/usr/include/python3.9 -c' 2022-08-31T15:52:55,734 extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror' 2022-08-31T15:52:56,784 WARN: CCompilerOpt.dist_test[590] : CCompilerOpt._dist_test_spawn[724] : Command (arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c /usr/local/lib/python3.9/dist-packages/numpy/distutils/checks/cpu_asimddp.c -o /tmp/tmpm3_3swcs/usr/local/lib/python3.9/dist-packages/numpy/distutils/checks/cpu_asimddp.o -MMD -MF /tmp/tmpm3_3swcs/usr/local/lib/python3.9/dist-packages/numpy/distutils/checks/cpu_asimddp.o.d -mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror) failed with exit status 1 output -> 2022-08-31T15:52:56,784 /tmp/cclGTD7y.s: Assembler messages: 2022-08-31T15:52:56,785 /tmp/cclGTD7y.s:79: Error: selected processor does not support `vudot.u8 q8,q9,q10' in ARM mode 2022-08-31T15:52:56,808 WARN: CCompilerOpt.feature_test[1490] : testing failed 2022-08-31T15:52:56,831 INFO: CCompilerOpt.__init__[1734] : initialize targets groups 2022-08-31T15:52:56,853 INFO: CCompilerOpt.__init__[1736] : parse target group simd_test 2022-08-31T15:52:56,877 INFO: CCompilerOpt._parse_target_tokens[1947] : skip targets (AVX512F FMA4 AVX512_SKX SSE42 XOP (FMA3 AVX2) VSX3 SSE2 VSX VSX2) not part of baseline or dispatch-able features 2022-08-31T15:52:56,900 INFO: CCompilerOpt.generate_dispatch_header[2280] : generate CPU dispatch header: (build/src.linux-armv7l-3.9/numpy/distutils/include/npy_cpu_dispatch_config.h) 2022-08-31T15:52:56,923 WARN: CCompilerOpt.generate_dispatch_header[2289] : dispatch header dir build/src.linux-armv7l-3.9/numpy/distutils/include does not exist, creating it 2022-08-31T15:52:57,048 INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' 2022-08-31T15:52:57,049 INFO: customize ArmFlangCompiler 2022-08-31T15:52:57,053 WARN: Could not locate executable armflang 2022-08-31T15:52:57,054 INFO: customize Gnu95FCompiler 2022-08-31T15:52:57,058 INFO: Found executable /usr/bin/gfortran 2022-08-31T15:52:57,248 INFO: customize Gnu95FCompiler 2022-08-31T15:52:57,358 INFO: customize Gnu95FCompiler using build_ext 2022-08-31T15:52:57,359 INFO: building 'amp.fmodules' extension 2022-08-31T15:52:57,387 INFO: compiling C sources 2022-08-31T15:52:57,387 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-08-31T15:52:57,389 creating build/temp.linux-armv7l-cpython-39/build 2022-08-31T15:52:57,390 creating build/temp.linux-armv7l-cpython-39/build/src.linux-armv7l-3.9 2022-08-31T15:52:57,391 creating build/temp.linux-armv7l-cpython-39/build/src.linux-armv7l-3.9/amp 2022-08-31T15:52:57,393 creating build/temp.linux-armv7l-cpython-39/build/src.linux-armv7l-3.9/build 2022-08-31T15:52:57,393 creating build/temp.linux-armv7l-cpython-39/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9 2022-08-31T15:52:57,394 creating build/temp.linux-armv7l-cpython-39/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amp 2022-08-31T15:52:57,395 INFO: compile options: '-Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amp -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2022-08-31T15:52:57,423 INFO: arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.9/amp/fmodulesmodule.c 2022-08-31T15:52:57,440 INFO: arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amp/fortranobject.c 2022-08-31T15:52:58,265 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960, 2022-08-31T15:52:58,266 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2022-08-31T15:52:58,266 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2022-08-31T15:52:58,267 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amp/fortranobject.h:13, 2022-08-31T15:52:58,267 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amp/fortranobject.c:2: 2022-08-31T15:52:58,268 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2022-08-31T15:52:58,268 17 | #warning "Using deprecated NumPy API, disable it with " \ 2022-08-31T15:52:58,269 | ^~~~~~~ 2022-08-31T15:52:58,269 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960, 2022-08-31T15:52:58,269 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2022-08-31T15:52:58,270 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2022-08-31T15:52:58,270 from build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amp/fortranobject.h:13, 2022-08-31T15:52:58,270 from build/src.linux-armv7l-3.9/amp/fmodulesmodule.c:20: 2022-08-31T15:52:58,271 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2022-08-31T15:52:58,271 17 | #warning "Using deprecated NumPy API, disable it with " \ 2022-08-31T15:52:58,271 | ^~~~~~~ 2022-08-31T15:52:58,725 build/src.linux-armv7l-3.9/amp/fmodulesmodule.c:114:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] 2022-08-31T15:52:58,726 114 | static int f2py_size(PyArrayObject* var, ...) 2022-08-31T15:52:58,726 | ^~~~~~~~~ 2022-08-31T15:53:06,987 INFO: compiling Fortran 90 module sources 2022-08-31T15:53:06,988 creating build/temp.linux-armv7l-cpython-39/amp 2022-08-31T15:53:06,990 INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops 2022-08-31T15:53:06,990 Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2022-08-31T15:53:06,991 Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2022-08-31T15:53:06,992 creating build/temp.linux-armv7l-cpython-39/amp/model 2022-08-31T15:53:06,993 creating build/temp.linux-armv7l-cpython-39/amp/descriptor 2022-08-31T15:53:06,994 INFO: compile options: '-Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amp -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2022-08-31T15:53:06,994 extra options: '-Jbuild/temp.linux-armv7l-cpython-39/amp -Ibuild/temp.linux-armv7l-cpython-39/amp' 2022-08-31T15:53:06,997 INFO: gfortran:f90: amp/model/neuralnetwork.f90 2022-08-31T15:54:02,616 INFO: gfortran:f90: amp/descriptor/cutoffs.f90 2022-08-31T15:54:02,907 INFO: gfortran:f90: amp/model.f90 2022-08-31T15:54:25,949 INFO: compiling Fortran sources 2022-08-31T15:54:25,950 INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops 2022-08-31T15:54:25,950 Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2022-08-31T15:54:25,951 Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops 2022-08-31T15:54:25,952 INFO: compile options: '-Ibuild/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amp -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.9/numpy/distutils/include -I/usr/include/python3.9 -c' 2022-08-31T15:54:25,953 extra options: '-Jbuild/temp.linux-armv7l-cpython-39/amp -Ibuild/temp.linux-armv7l-cpython-39/amp' 2022-08-31T15:54:25,954 INFO: gfortran:f90: amp/descriptor/gaussian.f90 2022-08-31T15:54:29,121 INFO: gfortran:f90: amp/descriptor/zernike.f90 2022-08-31T15:54:31,158 INFO: gfortran:f90: build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90 2022-08-31T15:54:31,483 build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90:256:10: 2022-08-31T15:54:31,484 256 | use neuralnetwork, only : min_fingerprints 2022-08-31T15:54:31,484 | 1 2022-08-31T15:54:31,484 Warning: Unused module variable ‘max_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] 2022-08-31T15:54:31,485 build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90:256:10: 2022-08-31T15:54:31,485 256 | use neuralnetwork, only : min_fingerprints 2022-08-31T15:54:31,486 | 1 2022-08-31T15:54:31,486 Warning: Unused module variable ‘min_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] 2022-08-31T15:54:31,486 build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90:256:10: 2022-08-31T15:54:31,487 256 | use neuralnetwork, only : min_fingerprints 2022-08-31T15:54:31,487 | 1 2022-08-31T15:54:31,488 Warning: Unused module variable ‘no_layers_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] 2022-08-31T15:54:31,488 build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90:256:10: 2022-08-31T15:54:31,489 256 | use neuralnetwork, only : min_fingerprints 2022-08-31T15:54:31,489 | 1 2022-08-31T15:54:31,490 Warning: Unused module variable ‘no_nodes_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] 2022-08-31T15:54:31,490 build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90:533:10: 2022-08-31T15:54:31,491 533 | use fingerprint_props, only : num_fingerprints_of_elements 2022-08-31T15:54:31,491 | 1 2022-08-31T15:54:31,491 Warning: Unused module variable ‘num_fingerprints_of_elements’ which has been explicitly imported at (1) [-Wunused-variable] 2022-08-31T15:54:31,492 build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90:533:10: 2022-08-31T15:54:31,492 533 | use fingerprint_props, only : num_fingerprints_of_elements 2022-08-31T15:54:31,493 | 1 2022-08-31T15:54:31,493 Warning: Unused module variable ‘raveled_fingerprintprimes’ which has been explicitly imported at (1) [-Wunused-variable] 2022-08-31T15:54:31,493 build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90:533:10: 2022-08-31T15:54:31,494 533 | use fingerprint_props, only : num_fingerprints_of_elements 2022-08-31T15:54:31,494 | 1 2022-08-31T15:54:31,495 Warning: Unused module variable ‘raveled_fingerprints’ which has been explicitly imported at (1) [-Wunused-variable] 2022-08-31T15:54:31,506 build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90:902:10: 2022-08-31T15:54:31,507 902 | use images_props, only : num_images 2022-08-31T15:54:31,507 | 1 2022-08-31T15:54:31,507 Warning: Unused module variable ‘actual_energies’ which has been explicitly imported at (1) [-Wunused-variable] 2022-08-31T15:54:31,508 build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90:902:10: 2022-08-31T15:54:31,509 902 | use images_props, only : num_images 2022-08-31T15:54:31,509 | 1 2022-08-31T15:54:31,509 Warning: Unused module variable ‘actual_forces’ which has been explicitly imported at (1) [-Wunused-variable] 2022-08-31T15:54:31,510 build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90:902:10: 2022-08-31T15:54:31,511 902 | use images_props, only : num_images 2022-08-31T15:54:31,511 | 1 2022-08-31T15:54:31,511 Warning: Unused module variable ‘atomic_numbers’ which has been explicitly imported at (1) [-Wunused-variable] 2022-08-31T15:54:31,512 build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90:902:10: 2022-08-31T15:54:31,512 902 | use images_props, only : num_images 2022-08-31T15:54:31,513 | 1 2022-08-31T15:54:31,513 Warning: Unused module variable ‘atomic_positions’ which has been explicitly imported at (1) [-Wunused-variable] 2022-08-31T15:54:31,513 build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90:902:10: 2022-08-31T15:54:31,514 902 | use images_props, only : num_images 2022-08-31T15:54:31,514 | 1 2022-08-31T15:54:31,515 Warning: Unused module variable ‘elements_numbers’ which has been explicitly imported at (1) [-Wunused-variable] 2022-08-31T15:54:31,515 build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90:902:10: 2022-08-31T15:54:31,516 902 | use images_props, only : num_images 2022-08-31T15:54:31,516 | 1 2022-08-31T15:54:31,516 Warning: Unused module variable ‘image_weights’ which has been explicitly imported at (1) [-Wunused-variable] 2022-08-31T15:54:31,516 build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90:902:10: 2022-08-31T15:54:31,517 902 | use images_props, only : num_images 2022-08-31T15:54:31,517 | 1 2022-08-31T15:54:31,518 Warning: Unused module variable ‘is_nft’ which has been explicitly imported at (1) [-Wunused-variable] 2022-08-31T15:54:31,518 build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90:902:10: 2022-08-31T15:54:31,519 902 | use images_props, only : num_images 2022-08-31T15:54:31,519 | 1 2022-08-31T15:54:31,519 Warning: Unused module variable ‘nft_indices’ which has been explicitly imported at (1) [-Wunused-variable] 2022-08-31T15:54:31,520 build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90:902:10: 2022-08-31T15:54:31,520 902 | use images_props, only : num_images 2022-08-31T15:54:31,521 | 1 2022-08-31T15:54:31,521 Warning: Unused module variable ‘num_images_atoms’ which has been explicitly imported at (1) [-Wunused-variable] 2022-08-31T15:54:31,521 build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90:902:10: 2022-08-31T15:54:31,522 902 | use images_props, only : num_images 2022-08-31T15:54:31,522 | 1 2022-08-31T15:54:31,522 Warning: Unused module variable ‘num_neighbors’ which has been explicitly imported at (1) [-Wunused-variable] 2022-08-31T15:54:31,523 build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.f90:902:10: 2022-08-31T15:54:31,523 902 | use images_props, only : num_images 2022-08-31T15:54:31,524 | 1 2022-08-31T15:54:31,524 Warning: Unused module variable ‘raveled_neighborlists’ which has been explicitly imported at (1) [-Wunused-variable] 2022-08-31T15:54:34,291 INFO: /usr/bin/gfortran -Wall -g -Wall -g -shared build/temp.linux-armv7l-cpython-39/build/src.linux-armv7l-3.9/amp/fmodulesmodule.o build/temp.linux-armv7l-cpython-39/build/src.linux-armv7l-3.9/build/src.linux-armv7l-3.9/amp/fortranobject.o build/temp.linux-armv7l-cpython-39/amp/model/neuralnetwork.o build/temp.linux-armv7l-cpython-39/amp/descriptor/cutoffs.o build/temp.linux-armv7l-cpython-39/amp/model.o build/temp.linux-armv7l-cpython-39/amp/descriptor/gaussian.o build/temp.linux-armv7l-cpython-39/amp/descriptor/zernike.o build/temp.linux-armv7l-cpython-39/build/src.linux-armv7l-3.9/amp/fmodules-f2pywrappers2.o -L/usr/lib/gcc/arm-linux-gnueabihf/10 -L/usr/lib/gcc/arm-linux-gnueabihf/10 -L/usr/lib -lgfortran -o build/lib.linux-armv7l-cpython-39/amp/fmodules.cpython-39-arm-linux-gnueabihf.so 2022-08-31T15:54:34,773 running build_scripts 2022-08-31T15:54:34,774 creating build/scripts.linux-armv7l-3.9 2022-08-31T15:54:34,777 copying and adjusting tools/amp-compress -> build/scripts.linux-armv7l-3.9 2022-08-31T15:54:34,781 copying and adjusting tools/amp-plotconvergence -> build/scripts.linux-armv7l-3.9 2022-08-31T15:54:34,783 changing mode of build/scripts.linux-armv7l-3.9/amp-compress from 644 to 755 2022-08-31T15:54:34,784 changing mode of build/scripts.linux-armv7l-3.9/amp-plotconvergence from 644 to 755 2022-08-31T15:54:35,548 installing to build/bdist.linux-armv7l/wheel 2022-08-31T15:54:35,549 running install 2022-08-31T15:54:35,606 running install_lib 2022-08-31T15:54:36,286 creating build/bdist.linux-armv7l 2022-08-31T15:54:36,287 creating build/bdist.linux-armv7l/wheel 2022-08-31T15:54:36,291 creating build/bdist.linux-armv7l/wheel/amp 2022-08-31T15:54:36,295 creating build/bdist.linux-armv7l/wheel/amp/descriptor 2022-08-31T15:54:36,297 copying build/lib.linux-armv7l-cpython-39/amp/descriptor/example.py -> build/bdist.linux-armv7l/wheel/amp/descriptor 2022-08-31T15:54:36,303 copying build/lib.linux-armv7l-cpython-39/amp/descriptor/gaussian.py -> build/bdist.linux-armv7l/wheel/amp/descriptor 2022-08-31T15:54:36,311 copying build/lib.linux-armv7l-cpython-39/amp/descriptor/__init__.py -> build/bdist.linux-armv7l/wheel/amp/descriptor 2022-08-31T15:54:36,316 copying build/lib.linux-armv7l-cpython-39/amp/descriptor/zernike.py -> build/bdist.linux-armv7l/wheel/amp/descriptor 2022-08-31T15:54:36,323 copying build/lib.linux-armv7l-cpython-39/amp/descriptor/cutoffs.py -> build/bdist.linux-armv7l/wheel/amp/descriptor 2022-08-31T15:54:36,327 copying build/lib.linux-armv7l-cpython-39/amp/descriptor/analysis.py -> build/bdist.linux-armv7l/wheel/amp/descriptor 2022-08-31T15:54:36,332 copying build/lib.linux-armv7l-cpython-39/amp/descriptor/bispectrum.py -> build/bdist.linux-armv7l/wheel/amp/descriptor 2022-08-31T15:54:36,339 creating build/bdist.linux-armv7l/wheel/amp/model 2022-08-31T15:54:36,341 copying build/lib.linux-armv7l-cpython-39/amp/model/neuralnetwork.py -> build/bdist.linux-armv7l/wheel/amp/model 2022-08-31T15:54:36,349 copying build/lib.linux-armv7l-cpython-39/amp/model/__main__.py -> build/bdist.linux-armv7l/wheel/amp/model 2022-08-31T15:54:36,354 copying build/lib.linux-armv7l-cpython-39/amp/model/kernelridge.py -> build/bdist.linux-armv7l/wheel/amp/model 2022-08-31T15:54:36,366 copying build/lib.linux-armv7l-cpython-39/amp/model/__init__.py -> build/bdist.linux-armv7l/wheel/amp/model 2022-08-31T15:54:36,375 copying build/lib.linux-armv7l-cpython-39/amp/model/tflow.py -> build/bdist.linux-armv7l/wheel/amp/model 2022-08-31T15:54:36,385 creating build/bdist.linux-armv7l/wheel/amp/regression 2022-08-31T15:54:36,387 copying build/lib.linux-armv7l-cpython-39/amp/regression/__init__.py -> build/bdist.linux-armv7l/wheel/amp/regression 2022-08-31T15:54:36,393 copying build/lib.linux-armv7l-cpython-39/amp/fmodules.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/amp 2022-08-31T15:54:36,448 copying build/lib.linux-armv7l-cpython-39/amp/__init__.py -> build/bdist.linux-armv7l/wheel/amp 2022-08-31T15:54:36,454 copying build/lib.linux-armv7l-cpython-39/amp/convert.py -> build/bdist.linux-armv7l/wheel/amp 2022-08-31T15:54:36,460 copying build/lib.linux-armv7l-cpython-39/amp/utilities.py -> build/bdist.linux-armv7l/wheel/amp 2022-08-31T15:54:36,470 creating build/bdist.linux-armv7l/wheel/amp/stats 2022-08-31T15:54:36,471 copying build/lib.linux-armv7l-cpython-39/amp/stats/bootstrap.py -> build/bdist.linux-armv7l/wheel/amp/stats 2022-08-31T15:54:36,477 copying build/lib.linux-armv7l-cpython-39/amp/stats/__init__.py -> build/bdist.linux-armv7l/wheel/amp/stats 2022-08-31T15:54:36,479 copying build/lib.linux-armv7l-cpython-39/amp/analysis.py -> build/bdist.linux-armv7l/wheel/amp 2022-08-31T15:54:36,486 copying build/lib.linux-armv7l-cpython-39/amp/VERSION -> build/bdist.linux-armv7l/wheel/amp 2022-08-31T15:54:36,489 running install_egg_info 2022-08-31T15:54:37,241 running egg_info 2022-08-31T15:54:37,242 creating amp_atomistics.egg-info 2022-08-31T15:54:37,921 writing amp_atomistics.egg-info/PKG-INFO 2022-08-31T15:54:38,485 writing dependency_links to amp_atomistics.egg-info/dependency_links.txt 2022-08-31T15:54:41,281 writing requirements to amp_atomistics.egg-info/requires.txt 2022-08-31T15:54:41,843 writing top-level names to amp_atomistics.egg-info/top_level.txt 2022-08-31T15:54:41,846 writing manifest file 'amp_atomistics.egg-info/SOURCES.txt' 2022-08-31T15:54:41,866 /usr/local/lib/python3.9/dist-packages/setuptools/command/egg_info.py:633: SetuptoolsDeprecationWarning: Custom 'build_py' does not implement 'get_data_files_without_manifest'. 2022-08-31T15:54:41,866 Please extend command classes from setuptools instead of distutils. 2022-08-31T15:54:41,867 warnings.warn( 2022-08-31T15:54:41,991 reading manifest file 'amp_atomistics.egg-info/SOURCES.txt' 2022-08-31T15:54:42,001 writing manifest file 'amp_atomistics.egg-info/SOURCES.txt' 2022-08-31T15:54:42,003 Copying amp_atomistics.egg-info to build/bdist.linux-armv7l/wheel/amp_atomistics-1.0-py3.9.egg-info 2022-08-31T15:54:42,026 running install_scripts 2022-08-31T15:54:42,028 creating build/bdist.linux-armv7l/wheel/amp_atomistics-1.0.data 2022-08-31T15:54:42,029 creating build/bdist.linux-armv7l/wheel/amp_atomistics-1.0.data/scripts 2022-08-31T15:54:42,032 copying build/scripts.linux-armv7l-3.9/amp-compress -> build/bdist.linux-armv7l/wheel/amp_atomistics-1.0.data/scripts 2022-08-31T15:54:42,036 copying build/scripts.linux-armv7l-3.9/amp-plotconvergence -> build/bdist.linux-armv7l/wheel/amp_atomistics-1.0.data/scripts 2022-08-31T15:54:42,040 changing mode of build/bdist.linux-armv7l/wheel/amp_atomistics-1.0.data/scripts/amp-compress to 755 2022-08-31T15:54:42,042 changing mode of build/bdist.linux-armv7l/wheel/amp_atomistics-1.0.data/scripts/amp-plotconvergence to 755 2022-08-31T15:54:42,045 running install_clib 2022-08-31T15:54:42,046 INFO: customize UnixCCompiler 2022-08-31T15:54:42,094 creating build/bdist.linux-armv7l/wheel/amp_atomistics-1.0.dist-info/WHEEL 2022-08-31T15:54:42,100 creating '/tmp/pip-wheel-ukuhudfn/amp_atomistics-1.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-08-31T15:54:42,106 adding 'amp/VERSION' 2022-08-31T15:54:42,113 adding 'amp/__init__.py' 2022-08-31T15:54:42,123 adding 'amp/analysis.py' 2022-08-31T15:54:42,132 adding 'amp/convert.py' 2022-08-31T15:54:42,529 adding 'amp/fmodules.cpython-39-arm-linux-gnueabihf.so' 2022-08-31T15:54:42,564 adding 'amp/utilities.py' 2022-08-31T15:54:42,570 adding 'amp/descriptor/__init__.py' 2022-08-31T15:54:42,573 adding 'amp/descriptor/analysis.py' 2022-08-31T15:54:42,582 adding 'amp/descriptor/bispectrum.py' 2022-08-31T15:54:42,586 adding 'amp/descriptor/cutoffs.py' 2022-08-31T15:54:42,591 adding 'amp/descriptor/example.py' 2022-08-31T15:54:42,604 adding 'amp/descriptor/gaussian.py' 2022-08-31T15:54:42,616 adding 'amp/descriptor/zernike.py' 2022-08-31T15:54:42,632 adding 'amp/model/__init__.py' 2022-08-31T15:54:42,637 adding 'amp/model/__main__.py' 2022-08-31T15:54:42,668 adding 'amp/model/kernelridge.py' 2022-08-31T15:54:42,686 adding 'amp/model/neuralnetwork.py' 2022-08-31T15:54:42,705 adding 'amp/model/tflow.py' 2022-08-31T15:54:42,712 adding 'amp/regression/__init__.py' 2022-08-31T15:54:42,716 adding 'amp/stats/__init__.py' 2022-08-31T15:54:42,723 adding 'amp/stats/bootstrap.py' 2022-08-31T15:54:42,730 adding 'amp_atomistics-1.0.data/scripts/amp-compress' 2022-08-31T15:54:42,733 adding 'amp_atomistics-1.0.data/scripts/amp-plotconvergence' 2022-08-31T15:54:42,738 adding 'amp_atomistics-1.0.dist-info/METADATA' 2022-08-31T15:54:42,741 adding 'amp_atomistics-1.0.dist-info/WHEEL' 2022-08-31T15:54:42,743 adding 'amp_atomistics-1.0.dist-info/top_level.txt' 2022-08-31T15:54:42,746 adding 'amp_atomistics-1.0.dist-info/RECORD' 2022-08-31T15:54:42,766 removing build/bdist.linux-armv7l/wheel 2022-08-31T15:54:42,789 INFO: 2022-08-31T15:54:42,790 ########### EXT COMPILER OPTIMIZATION ########### 2022-08-31T15:54:42,790 INFO: Platform : 2022-08-31T15:54:42,791 Architecture: armhf 2022-08-31T15:54:42,791 Compiler : gcc 2022-08-31T15:54:42,792 CPU baseline : 2022-08-31T15:54:42,792 Requested : 'min' 2022-08-31T15:54:42,792 Enabled : none 2022-08-31T15:54:42,792 Flags : none 2022-08-31T15:54:42,793 Extra checks: none 2022-08-31T15:54:42,793 CPU dispatch : 2022-08-31T15:54:42,794 Requested : 'max -xop -fma4' 2022-08-31T15:54:42,794 Enabled : NEON NEON_FP16 NEON_VFPV4 ASIMD ASIMDHP 2022-08-31T15:54:42,794 Generated : none 2022-08-31T15:54:42,797 INFO: CCompilerOpt.cache_flush[817] : write cache to path -> /tmp/pip-wheel-36j8f12c/amp-atomistics_0f9d4bec35654504a3ac0d7f948cd9cb/build/temp.linux-armv7l-cpython-39/ccompiler_opt_cache_ext.py 2022-08-31T15:54:43,180 Building wheel for amp-atomistics (setup.py): finished with status 'done' 2022-08-31T15:54:43,202 Created wheel for amp-atomistics: filename=amp_atomistics-1.0-cp39-cp39-linux_armv7l.whl size=472181 sha256=eb7fd88f4917f67a51c5565d1de81c2821fcc4371743208ab1ceda3c20ec654a 2022-08-31T15:54:43,204 Stored in directory: /tmp/pip-ephem-wheel-cache-otmxalrb/wheels/5f/57/fc/b408f9f236feb4bf4d20116f9afff6346247786ef158cc0c5a 2022-08-31T15:54:43,227 Successfully built amp-atomistics 2022-08-31T15:54:43,272 Removed build tracker: '/tmp/pip-build-tracker-daj7y6f6'