2022-09-04T00:22:16,181 Created temporary directory: /tmp/pip-ephem-wheel-cache-5_ny9oe_
2022-09-04T00:22:16,187 Created temporary directory: /tmp/pip-build-tracker-z0nwuu9j
2022-09-04T00:22:16,188 Initialized build tracking at /tmp/pip-build-tracker-z0nwuu9j
2022-09-04T00:22:16,188 Created build tracker: /tmp/pip-build-tracker-z0nwuu9j
2022-09-04T00:22:16,189 Entered build tracker: /tmp/pip-build-tracker-z0nwuu9j
2022-09-04T00:22:16,190 Created temporary directory: /tmp/pip-wheel-eo_dsycq
2022-09-04T00:22:16,261 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-09-04T00:22:16,269 2 location(s) to search for versions of shephard:
2022-09-04T00:22:16,269 * https://pypi.org/simple/shephard/
2022-09-04T00:22:16,269 * https://www.piwheels.org/simple/shephard/
2022-09-04T00:22:16,270 Fetching project page and analyzing links: https://pypi.org/simple/shephard/
2022-09-04T00:22:16,271 Getting page https://pypi.org/simple/shephard/
2022-09-04T00:22:16,274 Found index url https://pypi.org/simple
2022-09-04T00:22:16,460   Found link https://files.pythonhosted.org/packages/a9/95/cbdbdeb72c0c4970872dc8b61c9df622274cc80602640b478e234c921234/shephard-0.1.5.tar.gz#sha256=dde3b1d4760dff0a87253ea62b9cf0762efd76c4c6aaeae254017e7dd58de730 (from https://pypi.org/simple/shephard/), version: 0.1.5
2022-09-04T00:22:16,461   Found link https://files.pythonhosted.org/packages/e9/11/69a637d6d4e0cb3a2addc9c06587e781747dfee014076fdaab76d466c46f/shephard-0.1.7.tar.gz#sha256=fc335190dca3e216cdfb474656b171b519c914c1a0907613f0e452e72e902c37 (from https://pypi.org/simple/shephard/), version: 0.1.7
2022-09-04T00:22:16,462   Found link https://files.pythonhosted.org/packages/b7/90/ea0b27088b3586d48ecaaae9743f8289d28c8e602c4aee5bb4e342b06fc5/shephard-0.1.8.tar.gz#sha256=ef741c657dac4ce44f5e94f73fe3721b4e8873e7b9f5c4b998567936db232335 (from https://pypi.org/simple/shephard/), version: 0.1.8
2022-09-04T00:22:16,463   Found link https://files.pythonhosted.org/packages/2d/0b/2c408626a7f199cb04f61d0fffb3372420ad5564e6bffb942646d140232a/shephard-0.1.12.tar.gz#sha256=5a73342bb93a0837965ee85f744ac04d2a7a7c14abfcc295da6fa1ff9e18fbaa (from https://pypi.org/simple/shephard/), version: 0.1.12
2022-09-04T00:22:16,463 Fetching project page and analyzing links: https://www.piwheels.org/simple/shephard/
2022-09-04T00:22:16,464 Getting page https://www.piwheels.org/simple/shephard/
2022-09-04T00:22:16,466 Found index url https://www.piwheels.org/simple
2022-09-04T00:22:16,676   Skipping link: No binaries permitted for shephard: https://www.piwheels.org/simple/shephard/shephard-0.1.8-py3-none-any.whl#sha256=affda4c08aba9e71908aa718a3fdb9851faff0a49135550c7741cbeb0d804582 (from https://www.piwheels.org/simple/shephard/)
2022-09-04T00:22:16,677   Skipping link: No binaries permitted for shephard: https://www.piwheels.org/simple/shephard/shephard-0.1.7-py3-none-any.whl#sha256=e515f924da74d106bd56b75ebb3d14350dfd59ecae19d4004c155b7894558ee9 (from https://www.piwheels.org/simple/shephard/)
2022-09-04T00:22:16,677   Skipping link: No binaries permitted for shephard: https://www.piwheels.org/simple/shephard/shephard-0.1.5-py3-none-any.whl#sha256=920236db73af811e8085b5527ca1713d3434695a2dc7a8a4da603b7034a40f67 (from https://www.piwheels.org/simple/shephard/)
2022-09-04T00:22:16,678 Skipping link: not a file: https://www.piwheels.org/simple/shephard/
2022-09-04T00:22:16,679 Skipping link: not a file: https://pypi.org/simple/shephard/
2022-09-04T00:22:16,713 Given no hashes to check 1 links for project 'shephard': discarding no candidates
2022-09-04T00:22:16,748 Collecting shephard==0.1.12
2022-09-04T00:22:16,753   Created temporary directory: /tmp/pip-unpack-ulqh1bx0
2022-09-04T00:22:17,033   Downloading shephard-0.1.12.tar.gz (182 kB)
2022-09-04T00:22:17,697   Added shephard==0.1.12 from https://files.pythonhosted.org/packages/2d/0b/2c408626a7f199cb04f61d0fffb3372420ad5564e6bffb942646d140232a/shephard-0.1.12.tar.gz#sha256=5a73342bb93a0837965ee85f744ac04d2a7a7c14abfcc295da6fa1ff9e18fbaa to build tracker '/tmp/pip-build-tracker-z0nwuu9j'
2022-09-04T00:22:17,700   Running setup.py (path:/tmp/pip-wheel-eo_dsycq/shephard_22d6d1b940c542c598513ff39fcbb881/setup.py) egg_info for package shephard
2022-09-04T00:22:17,702   Created temporary directory: /tmp/pip-pip-egg-info-ayun3vq6
2022-09-04T00:22:17,702   Preparing metadata (setup.py): started
2022-09-04T00:22:17,705   Running command python setup.py egg_info
2022-09-04T00:22:24,914   running egg_info
2022-09-04T00:22:24,919   creating /tmp/pip-pip-egg-info-ayun3vq6/shephard.egg-info
2022-09-04T00:22:25,606   writing /tmp/pip-pip-egg-info-ayun3vq6/shephard.egg-info/PKG-INFO
2022-09-04T00:22:26,198   writing dependency_links to /tmp/pip-pip-egg-info-ayun3vq6/shephard.egg-info/dependency_links.txt
2022-09-04T00:22:29,149   writing requirements to /tmp/pip-pip-egg-info-ayun3vq6/shephard.egg-info/requires.txt
2022-09-04T00:22:29,741   writing top-level names to /tmp/pip-pip-egg-info-ayun3vq6/shephard.egg-info/top_level.txt
2022-09-04T00:22:29,744   writing manifest file '/tmp/pip-pip-egg-info-ayun3vq6/shephard.egg-info/SOURCES.txt'
2022-09-04T00:22:29,939   reading manifest file '/tmp/pip-pip-egg-info-ayun3vq6/shephard.egg-info/SOURCES.txt'
2022-09-04T00:22:29,942   reading manifest template 'MANIFEST.in'
2022-09-04T00:22:29,961   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:531: UserWarning: Normalizing 'v0.1.12' to '0.1.12'
2022-09-04T00:22:29,962     warnings.warn(tmpl.format(**locals()))
2022-09-04T00:22:29,962   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2022-09-04T00:22:29,963   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2022-09-04T00:22:29,964   warning: no previously-included files matching '*.so' found anywhere in distribution
2022-09-04T00:22:29,965   adding license file 'LICENSE'
2022-09-04T00:22:29,977   writing manifest file '/tmp/pip-pip-egg-info-ayun3vq6/shephard.egg-info/SOURCES.txt'
2022-09-04T00:22:30,195   Preparing metadata (setup.py): finished with status 'done'
2022-09-04T00:22:30,207   Source in /tmp/pip-wheel-eo_dsycq/shephard_22d6d1b940c542c598513ff39fcbb881 has version 0.1.12, which satisfies requirement shephard==0.1.12 from https://files.pythonhosted.org/packages/2d/0b/2c408626a7f199cb04f61d0fffb3372420ad5564e6bffb942646d140232a/shephard-0.1.12.tar.gz#sha256=5a73342bb93a0837965ee85f744ac04d2a7a7c14abfcc295da6fa1ff9e18fbaa
2022-09-04T00:22:30,209   Removed shephard==0.1.12 from https://files.pythonhosted.org/packages/2d/0b/2c408626a7f199cb04f61d0fffb3372420ad5564e6bffb942646d140232a/shephard-0.1.12.tar.gz#sha256=5a73342bb93a0837965ee85f744ac04d2a7a7c14abfcc295da6fa1ff9e18fbaa from build tracker '/tmp/pip-build-tracker-z0nwuu9j'
2022-09-04T00:22:30,218 Created temporary directory: /tmp/pip-unpack-lr2l02lq
2022-09-04T00:22:30,219 Building wheels for collected packages: shephard
2022-09-04T00:22:30,229   Created temporary directory: /tmp/pip-wheel-deqldbgd
2022-09-04T00:22:30,229   Building wheel for shephard (setup.py): started
2022-09-04T00:22:30,231   Destination directory: /tmp/pip-wheel-deqldbgd
2022-09-04T00:22:30,232   Running command python setup.py bdist_wheel
2022-09-04T00:22:36,625   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:531: UserWarning: Normalizing 'v0.1.12' to '0.1.12'
2022-09-04T00:22:36,626     warnings.warn(tmpl.format(**locals()))
2022-09-04T00:22:36,905   running bdist_wheel
2022-09-04T00:22:38,376   running build
2022-09-04T00:22:38,376   running build_py
2022-09-04T00:22:38,391   creating build
2022-09-04T00:22:38,391   creating build/lib
2022-09-04T00:22:38,393   creating build/lib/shephard
2022-09-04T00:22:38,396   copying shephard/__init__.py -> build/lib/shephard
2022-09-04T00:22:38,400   copying shephard/test_domains_sites.py -> build/lib/shephard
2022-09-04T00:22:38,404   copying shephard/exceptions.py -> build/lib/shephard
2022-09-04T00:22:38,408   copying shephard/domain.py -> build/lib/shephard
2022-09-04T00:22:38,413   copying shephard/_version.py -> build/lib/shephard
2022-09-04T00:22:38,416   copying shephard/protein.py -> build/lib/shephard
2022-09-04T00:22:38,425   copying shephard/general_utilities.py -> build/lib/shephard
2022-09-04T00:22:38,428   copying shephard/sequence_utilities.py -> build/lib/shephard
2022-09-04T00:22:38,432   copying shephard/track.py -> build/lib/shephard
2022-09-04T00:22:38,437   copying shephard/proteome.py -> build/lib/shephard
2022-09-04T00:22:38,443   copying shephard/site.py -> build/lib/shephard
2022-09-04T00:22:38,450   creating build/lib/shephard/interfaces
2022-09-04T00:22:38,451   copying shephard/interfaces/si_sites.py -> build/lib/shephard/interfaces
2022-09-04T00:22:38,457   copying shephard/interfaces/si_domains.py -> build/lib/shephard/interfaces
2022-09-04T00:22:38,462   copying shephard/interfaces/si_protein_attributes.py -> build/lib/shephard/interfaces
2022-09-04T00:22:38,466   copying shephard/interfaces/__init__.py -> build/lib/shephard/interfaces
2022-09-04T00:22:38,469   copying shephard/interfaces/si_proteins.py -> build/lib/shephard/interfaces
2022-09-04T00:22:38,473   copying shephard/interfaces/interface_tools.py -> build/lib/shephard/interfaces
2022-09-04T00:22:38,478   copying shephard/interfaces/si_tracks.py -> build/lib/shephard/interfaces
2022-09-04T00:22:38,484   creating build/lib/shephard/tools
2022-09-04T00:22:38,486   copying shephard/tools/sequence_tools.py -> build/lib/shephard/tools
2022-09-04T00:22:38,490   copying shephard/tools/track_tools.py -> build/lib/shephard/tools
2022-09-04T00:22:38,493   copying shephard/tools/__init__.py -> build/lib/shephard/tools
2022-09-04T00:22:38,497   copying shephard/tools/site_tools.py -> build/lib/shephard/tools
2022-09-04T00:22:38,501   copying shephard/tools/domain_tools.py -> build/lib/shephard/tools
2022-09-04T00:22:38,505   copying shephard/tools/experimental.py -> build/lib/shephard/tools
2022-09-04T00:22:38,512   creating build/lib/shephard/tests
2022-09-04T00:22:38,514   copying shephard/tests/test_si_tracks.py -> build/lib/shephard/tests
2022-09-04T00:22:38,519   copying shephard/tests/test_domains.py -> build/lib/shephard/tests
2022-09-04T00:22:38,523   copying shephard/tests/conftest.py -> build/lib/shephard/tests
2022-09-04T00:22:38,527   copying shephard/tests/__init__.py -> build/lib/shephard/tests
2022-09-04T00:22:38,530   copying shephard/tests/test_apis_fasta.py -> build/lib/shephard/tests
2022-09-04T00:22:38,534   copying shephard/tests/test_shephard.py -> build/lib/shephard/tests
2022-09-04T00:22:38,537   copying shephard/tests/test_interfaces.py -> build/lib/shephard/tests
2022-09-04T00:22:38,541   copying shephard/tests/example_test_function.py -> build/lib/shephard/tests
2022-09-04T00:22:38,544   copying shephard/tests/test_si_sites.py -> build/lib/shephard/tests
2022-09-04T00:22:38,548   copying shephard/tests/test_logic.py -> build/lib/shephard/tests
2022-09-04T00:22:38,551   copying shephard/tests/test_track_tools.py -> build/lib/shephard/tests
2022-09-04T00:22:38,555   copying shephard/tests/test_protein.py -> build/lib/shephard/tests
2022-09-04T00:22:38,560   copying shephard/tests/test_add_remove_annotations.py -> build/lib/shephard/tests
2022-09-04T00:22:38,563   copying shephard/tests/test_sites.py -> build/lib/shephard/tests
2022-09-04T00:22:38,567   copying shephard/tests/test_proteome.py -> build/lib/shephard/tests
2022-09-04T00:22:38,571   copying shephard/tests/test_sequence_tools.py -> build/lib/shephard/tests
2022-09-04T00:22:38,574   copying shephard/tests/test_domain_tools.py -> build/lib/shephard/tests
2022-09-04T00:22:38,579   copying shephard/tests/test_si_domains.py -> build/lib/shephard/tests
2022-09-04T00:22:38,583   copying shephard/tests/test_tracks.py -> build/lib/shephard/tests
2022-09-04T00:22:38,587   creating build/lib/shephard/apis
2022-09-04T00:22:38,589   copying shephard/apis/__init__.py -> build/lib/shephard/apis
2022-09-04T00:22:38,593   copying shephard/apis/uniprot.py -> build/lib/shephard/apis
2022-09-04T00:22:38,597   copying shephard/apis/fasta.py -> build/lib/shephard/apis
2022-09-04T00:22:38,602   running egg_info
2022-09-04T00:22:39,971   writing shephard.egg-info/PKG-INFO
2022-09-04T00:22:40,569   writing dependency_links to shephard.egg-info/dependency_links.txt
2022-09-04T00:22:43,604   writing requirements to shephard.egg-info/requires.txt
2022-09-04T00:22:44,203   writing top-level names to shephard.egg-info/top_level.txt
2022-09-04T00:22:44,303   reading manifest file 'shephard.egg-info/SOURCES.txt'
2022-09-04T00:22:44,328   reading manifest template 'MANIFEST.in'
2022-09-04T00:22:44,344   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2022-09-04T00:22:44,346   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2022-09-04T00:22:44,348   warning: no previously-included files matching '*.so' found anywhere in distribution
2022-09-04T00:22:44,348   adding license file 'LICENSE'
2022-09-04T00:22:44,366   writing manifest file 'shephard.egg-info/SOURCES.txt'
2022-09-04T00:22:44,371   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-09-04T00:22:44,372       ############################
2022-09-04T00:22:44,372       # Package would be ignored #
2022-09-04T00:22:44,373       ############################
2022-09-04T00:22:44,373       Python recognizes 'shephard.data' as an importable package, however it is
2022-09-04T00:22:44,373       included in the distribution as "data".
2022-09-04T00:22:44,374       This behavior is likely to change in future versions of setuptools (and
2022-09-04T00:22:44,374       therefore is considered deprecated).

2022-09-04T00:22:44,375       Please make sure that 'shephard.data' is included as a package by using
2022-09-04T00:22:44,375       setuptools' `packages` configuration field or the proper discovery methods.

2022-09-04T00:22:44,375       You can read more about "package discovery" and "data files" on setuptools
2022-09-04T00:22:44,376       documentation page.


2022-09-04T00:22:44,377   !!

2022-09-04T00:22:44,377     check.warn(importable)
2022-09-04T00:22:44,378   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-09-04T00:22:44,379       ############################
2022-09-04T00:22:44,379       # Package would be ignored #
2022-09-04T00:22:44,379       ############################
2022-09-04T00:22:44,379       Python recognizes 'shephard.data.test_data' as an importable package, however it is
2022-09-04T00:22:44,380       included in the distribution as "data".
2022-09-04T00:22:44,380       This behavior is likely to change in future versions of setuptools (and
2022-09-04T00:22:44,380       therefore is considered deprecated).

2022-09-04T00:22:44,381       Please make sure that 'shephard.data.test_data' is included as a package by using
2022-09-04T00:22:44,381       setuptools' `packages` configuration field or the proper discovery methods.

2022-09-04T00:22:44,382       You can read more about "package discovery" and "data files" on setuptools
2022-09-04T00:22:44,382       documentation page.


2022-09-04T00:22:44,383   !!

2022-09-04T00:22:44,383     check.warn(importable)
2022-09-04T00:22:44,384   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-09-04T00:22:44,385       ############################
2022-09-04T00:22:44,385       # Package would be ignored #
2022-09-04T00:22:44,385       ############################
2022-09-04T00:22:44,386       Python recognizes 'shephard.tests.output_test' as an importable package, however it is
2022-09-04T00:22:44,386       included in the distribution as "data".
2022-09-04T00:22:44,386       This behavior is likely to change in future versions of setuptools (and
2022-09-04T00:22:44,387       therefore is considered deprecated).

2022-09-04T00:22:44,387       Please make sure that 'shephard.tests.output_test' is included as a package by using
2022-09-04T00:22:44,388       setuptools' `packages` configuration field or the proper discovery methods.

2022-09-04T00:22:44,388       You can read more about "package discovery" and "data files" on setuptools
2022-09-04T00:22:44,389       documentation page.


2022-09-04T00:22:44,390   !!

2022-09-04T00:22:44,390     check.warn(importable)
2022-09-04T00:22:44,391   creating build/lib/shephard/data
2022-09-04T00:22:44,391   copying shephard/data/README.md -> build/lib/shephard/data
2022-09-04T00:22:44,391   copying shephard/data/look_and_say.dat -> build/lib/shephard/data
2022-09-04T00:22:44,395   creating build/lib/shephard/data/test_data
2022-09-04T00:22:44,396   copying shephard/data/test_data/TS1_domains_idr.tsv -> build/lib/shephard/data/test_data
2022-09-04T00:22:44,400   copying shephard/data/test_data/TS1_domains_idr_and_others.tsv -> build/lib/shephard/data/test_data
2022-09-04T00:22:44,404   copying shephard/data/test_data/TS1_domains_pscore.tsv -> build/lib/shephard/data/test_data
2022-09-04T00:22:44,408   copying shephard/data/test_data/TS1_protein_attributes.tsv -> build/lib/shephard/data/test_data
2022-09-04T00:22:44,412   copying shephard/data/test_data/TS1_sites.tsv -> build/lib/shephard/data/test_data
2022-09-04T00:22:44,416   copying shephard/data/test_data/TS1_tracks_pscore.tsv -> build/lib/shephard/data/test_data
2022-09-04T00:22:44,422   copying shephard/data/test_data/names.txt -> build/lib/shephard/data/test_data
2022-09-04T00:22:44,426   copying shephard/data/test_data/seqs.fasta -> build/lib/shephard/data/test_data
2022-09-04T00:22:44,430   copying shephard/data/test_data/testset_1.fasta -> build/lib/shephard/data/test_data
2022-09-04T00:22:44,435   copying shephard/data/test_data/testset_1.fasta.fai -> build/lib/shephard/data/test_data
2022-09-04T00:22:44,438   copying shephard/data/test_data/testset_1_ptms.tsv -> build/lib/shephard/data/test_data
2022-09-04T00:22:44,442   copying shephard/data/test_data/ts1_bonus_sites.tsv -> build/lib/shephard/data/test_data
2022-09-04T00:22:44,446   copying shephard/data/test_data/ts1_bonus_sites_bad.tsv -> build/lib/shephard/data/test_data
2022-09-04T00:22:44,450   copying shephard/data/test_data/ts1_bonus_sites_bad2.tsv -> build/lib/shephard/data/test_data
2022-09-04T00:22:44,454   copying shephard/data/test_data/tst.py -> build/lib/shephard/data/test_data
2022-09-04T00:22:44,457   copying shephard/tests/test_scratchpad.ipynb -> build/lib/shephard/tests
2022-09-04T00:22:44,462   creating build/lib/shephard/tests/.ipynb_checkpoints
2022-09-04T00:22:44,463   copying shephard/tests/.ipynb_checkpoints/test_scratchpad-checkpoint.ipynb -> build/lib/shephard/tests/.ipynb_checkpoints
2022-09-04T00:22:44,467   creating build/lib/shephard/tests/output_test
2022-09-04T00:22:44,469   copying shephard/tests/output_test/all_symbols_test.tsv -> build/lib/shephard/tests/output_test
2022-09-04T00:22:44,473   copying shephard/tests/output_test/all_values_test.tsv -> build/lib/shephard/tests/output_test
2022-09-04T00:22:44,479   copying shephard/tests/output_test/all_values_test_from_list.tsv -> build/lib/shephard/tests/output_test
2022-09-04T00:22:44,484   copying shephard/tests/output_test/out_tracks.tsv -> build/lib/shephard/tests/output_test
2022-09-04T00:22:44,490   copying shephard/tests/output_test/readme.md -> build/lib/shephard/tests/output_test
2022-09-04T00:22:44,493   copying shephard/tests/output_test/shephard_track_phosres.tsv -> build/lib/shephard/tests/output_test
2022-09-04T00:22:44,497   copying shephard/tests/output_test/shephard_track_pscore.tsv -> build/lib/shephard/tests/output_test
2022-09-04T00:22:44,503   copying shephard/tests/output_test/test_domains.tsv -> build/lib/shephard/tests/output_test
2022-09-04T00:22:44,507   copying shephard/tests/output_test/test_sites.tsv -> build/lib/shephard/tests/output_test
2022-09-04T00:22:44,514   copying shephard/tests/output_test/track_phospho_track.tsv -> build/lib/shephard/tests/output_test
2022-09-04T00:22:44,519   copying shephard/tests/output_test/track_random_vals.tsv -> build/lib/shephard/tests/output_test
2022-09-04T00:22:44,533   UPDATING build/lib/shephard/_version.py
2022-09-04T00:22:44,536   set build/lib/shephard/_version.py to 'v0.1.12'
2022-09-04T00:22:45,220   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-09-04T00:22:45,220     setuptools.SetuptoolsDeprecationWarning,
2022-09-04T00:22:45,901   installing to build/bdist.linux-armv7l/wheel
2022-09-04T00:22:45,902   running install
2022-09-04T00:22:45,963   running install_lib
2022-09-04T00:22:46,645   creating build/bdist.linux-armv7l
2022-09-04T00:22:46,646   creating build/bdist.linux-armv7l/wheel
2022-09-04T00:22:46,650   creating build/bdist.linux-armv7l/wheel/shephard
2022-09-04T00:22:46,654   creating build/bdist.linux-armv7l/wheel/shephard/interfaces
2022-09-04T00:22:46,656   copying build/lib/shephard/interfaces/si_sites.py -> build/bdist.linux-armv7l/wheel/shephard/interfaces
2022-09-04T00:22:46,662   copying build/lib/shephard/interfaces/si_domains.py -> build/bdist.linux-armv7l/wheel/shephard/interfaces
2022-09-04T00:22:46,667   copying build/lib/shephard/interfaces/si_protein_attributes.py -> build/bdist.linux-armv7l/wheel/shephard/interfaces
2022-09-04T00:22:46,672   copying build/lib/shephard/interfaces/__init__.py -> build/bdist.linux-armv7l/wheel/shephard/interfaces
2022-09-04T00:22:46,675   copying build/lib/shephard/interfaces/si_proteins.py -> build/bdist.linux-armv7l/wheel/shephard/interfaces
2022-09-04T00:22:46,679   copying build/lib/shephard/interfaces/interface_tools.py -> build/bdist.linux-armv7l/wheel/shephard/interfaces
2022-09-04T00:22:46,684   copying build/lib/shephard/interfaces/si_tracks.py -> build/bdist.linux-armv7l/wheel/shephard/interfaces
2022-09-04T00:22:46,689   copying build/lib/shephard/__init__.py -> build/bdist.linux-armv7l/wheel/shephard
2022-09-04T00:22:46,692   copying build/lib/shephard/test_domains_sites.py -> build/bdist.linux-armv7l/wheel/shephard
2022-09-04T00:22:46,697   creating build/bdist.linux-armv7l/wheel/shephard/tools
2022-09-04T00:22:46,699   copying build/lib/shephard/tools/sequence_tools.py -> build/bdist.linux-armv7l/wheel/shephard/tools
2022-09-04T00:22:46,703   copying build/lib/shephard/tools/track_tools.py -> build/bdist.linux-armv7l/wheel/shephard/tools
2022-09-04T00:22:46,707   copying build/lib/shephard/tools/__init__.py -> build/bdist.linux-armv7l/wheel/shephard/tools
2022-09-04T00:22:46,711   copying build/lib/shephard/tools/site_tools.py -> build/bdist.linux-armv7l/wheel/shephard/tools
2022-09-04T00:22:46,715   copying build/lib/shephard/tools/domain_tools.py -> build/bdist.linux-armv7l/wheel/shephard/tools
2022-09-04T00:22:46,721   copying build/lib/shephard/tools/experimental.py -> build/bdist.linux-armv7l/wheel/shephard/tools
2022-09-04T00:22:46,725   copying build/lib/shephard/exceptions.py -> build/bdist.linux-armv7l/wheel/shephard
2022-09-04T00:22:46,729   copying build/lib/shephard/domain.py -> build/bdist.linux-armv7l/wheel/shephard
2022-09-04T00:22:46,735   copying build/lib/shephard/_version.py -> build/bdist.linux-armv7l/wheel/shephard
2022-09-04T00:22:46,738   copying build/lib/shephard/protein.py -> build/bdist.linux-armv7l/wheel/shephard
2022-09-04T00:22:46,746   copying build/lib/shephard/general_utilities.py -> build/bdist.linux-armv7l/wheel/shephard
2022-09-04T00:22:46,749   copying build/lib/shephard/sequence_utilities.py -> build/bdist.linux-armv7l/wheel/shephard
2022-09-04T00:22:46,752   copying build/lib/shephard/track.py -> build/bdist.linux-armv7l/wheel/shephard
2022-09-04T00:22:46,759   creating build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,760   copying build/lib/shephard/tests/test_si_tracks.py -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,766   copying build/lib/shephard/tests/test_domains.py -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,770   copying build/lib/shephard/tests/conftest.py -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,773   copying build/lib/shephard/tests/__init__.py -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,776   copying build/lib/shephard/tests/test_apis_fasta.py -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,779   copying build/lib/shephard/tests/test_shephard.py -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,782   copying build/lib/shephard/tests/test_interfaces.py -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,785   copying build/lib/shephard/tests/example_test_function.py -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,789   copying build/lib/shephard/tests/test_si_sites.py -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,792   copying build/lib/shephard/tests/test_logic.py -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,795   copying build/lib/shephard/tests/test_scratchpad.ipynb -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,800   creating build/bdist.linux-armv7l/wheel/shephard/tests/output_test
2022-09-04T00:22:46,801   copying build/lib/shephard/tests/output_test/test_sites.tsv -> build/bdist.linux-armv7l/wheel/shephard/tests/output_test
2022-09-04T00:22:46,808   copying build/lib/shephard/tests/output_test/out_tracks.tsv -> build/bdist.linux-armv7l/wheel/shephard/tests/output_test
2022-09-04T00:22:46,813   copying build/lib/shephard/tests/output_test/test_domains.tsv -> build/bdist.linux-armv7l/wheel/shephard/tests/output_test
2022-09-04T00:22:46,817   copying build/lib/shephard/tests/output_test/all_values_test.tsv -> build/bdist.linux-armv7l/wheel/shephard/tests/output_test
2022-09-04T00:22:46,822   copying build/lib/shephard/tests/output_test/all_values_test_from_list.tsv -> build/bdist.linux-armv7l/wheel/shephard/tests/output_test
2022-09-04T00:22:46,827   copying build/lib/shephard/tests/output_test/shephard_track_pscore.tsv -> build/bdist.linux-armv7l/wheel/shephard/tests/output_test
2022-09-04T00:22:46,831   copying build/lib/shephard/tests/output_test/all_symbols_test.tsv -> build/bdist.linux-armv7l/wheel/shephard/tests/output_test
2022-09-04T00:22:46,835   copying build/lib/shephard/tests/output_test/track_random_vals.tsv -> build/bdist.linux-armv7l/wheel/shephard/tests/output_test
2022-09-04T00:22:46,838   copying build/lib/shephard/tests/output_test/readme.md -> build/bdist.linux-armv7l/wheel/shephard/tests/output_test
2022-09-04T00:22:46,841   copying build/lib/shephard/tests/output_test/track_phospho_track.tsv -> build/bdist.linux-armv7l/wheel/shephard/tests/output_test
2022-09-04T00:22:46,844   copying build/lib/shephard/tests/output_test/shephard_track_phosres.tsv -> build/bdist.linux-armv7l/wheel/shephard/tests/output_test
2022-09-04T00:22:46,847   copying build/lib/shephard/tests/test_track_tools.py -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,850   copying build/lib/shephard/tests/test_protein.py -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,854   copying build/lib/shephard/tests/test_add_remove_annotations.py -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,858   copying build/lib/shephard/tests/test_sites.py -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,861   copying build/lib/shephard/tests/test_proteome.py -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,865   copying build/lib/shephard/tests/test_sequence_tools.py -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,869   creating build/bdist.linux-armv7l/wheel/shephard/tests/.ipynb_checkpoints
2022-09-04T00:22:46,870   copying build/lib/shephard/tests/.ipynb_checkpoints/test_scratchpad-checkpoint.ipynb -> build/bdist.linux-armv7l/wheel/shephard/tests/.ipynb_checkpoints
2022-09-04T00:22:46,873   copying build/lib/shephard/tests/test_domain_tools.py -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,877   copying build/lib/shephard/tests/test_si_domains.py -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,881   copying build/lib/shephard/tests/test_tracks.py -> build/bdist.linux-armv7l/wheel/shephard/tests
2022-09-04T00:22:46,884   copying build/lib/shephard/proteome.py -> build/bdist.linux-armv7l/wheel/shephard
2022-09-04T00:22:46,890   creating build/bdist.linux-armv7l/wheel/shephard/data
2022-09-04T00:22:46,892   copying build/lib/shephard/data/README.md -> build/bdist.linux-armv7l/wheel/shephard/data
2022-09-04T00:22:46,896   creating build/bdist.linux-armv7l/wheel/shephard/data/test_data
2022-09-04T00:22:46,897   copying build/lib/shephard/data/test_data/TS1_protein_attributes.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data
2022-09-04T00:22:46,901   copying build/lib/shephard/data/test_data/names.txt -> build/bdist.linux-armv7l/wheel/shephard/data/test_data
2022-09-04T00:22:46,904   copying build/lib/shephard/data/test_data/TS1_domains_idr_and_others.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data
2022-09-04T00:22:46,907   copying build/lib/shephard/data/test_data/TS1_domains_idr.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data
2022-09-04T00:22:46,910   copying build/lib/shephard/data/test_data/testset_1_ptms.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data
2022-09-04T00:22:46,913   copying build/lib/shephard/data/test_data/testset_1.fasta -> build/bdist.linux-armv7l/wheel/shephard/data/test_data
2022-09-04T00:22:46,917   copying build/lib/shephard/data/test_data/TS1_domains_pscore.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data
2022-09-04T00:22:46,920   copying build/lib/shephard/data/test_data/ts1_bonus_sites_bad.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data
2022-09-04T00:22:46,922   copying build/lib/shephard/data/test_data/seqs.fasta -> build/bdist.linux-armv7l/wheel/shephard/data/test_data
2022-09-04T00:22:46,926   copying build/lib/shephard/data/test_data/ts1_bonus_sites_bad2.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data
2022-09-04T00:22:46,929   copying build/lib/shephard/data/test_data/ts1_bonus_sites.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data
2022-09-04T00:22:46,932   copying build/lib/shephard/data/test_data/TS1_tracks_pscore.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data
2022-09-04T00:22:46,937   copying build/lib/shephard/data/test_data/TS1_sites.tsv -> build/bdist.linux-armv7l/wheel/shephard/data/test_data
2022-09-04T00:22:46,941   copying build/lib/shephard/data/test_data/tst.py -> build/bdist.linux-armv7l/wheel/shephard/data/test_data
2022-09-04T00:22:46,944   copying build/lib/shephard/data/test_data/testset_1.fasta.fai -> build/bdist.linux-armv7l/wheel/shephard/data/test_data
2022-09-04T00:22:46,947   copying build/lib/shephard/data/look_and_say.dat -> build/bdist.linux-armv7l/wheel/shephard/data
2022-09-04T00:22:46,951   creating build/bdist.linux-armv7l/wheel/shephard/apis
2022-09-04T00:22:46,952   copying build/lib/shephard/apis/__init__.py -> build/bdist.linux-armv7l/wheel/shephard/apis
2022-09-04T00:22:46,956   copying build/lib/shephard/apis/uniprot.py -> build/bdist.linux-armv7l/wheel/shephard/apis
2022-09-04T00:22:46,960   copying build/lib/shephard/apis/fasta.py -> build/bdist.linux-armv7l/wheel/shephard/apis
2022-09-04T00:22:46,964   copying build/lib/shephard/site.py -> build/bdist.linux-armv7l/wheel/shephard
2022-09-04T00:22:46,968   running install_egg_info
2022-09-04T00:22:47,675   Copying shephard.egg-info to build/bdist.linux-armv7l/wheel/shephard-0.1.12-py3.7.egg-info
2022-09-04T00:22:47,697   running install_scripts
2022-09-04T00:22:47,841   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-09-04T00:22:47,850   creating build/bdist.linux-armv7l/wheel/shephard-0.1.12.dist-info/WHEEL
2022-09-04T00:22:47,854   creating '/tmp/pip-wheel-deqldbgd/shephard-0.1.12-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-09-04T00:22:47,859   adding 'shephard/__init__.py'
2022-09-04T00:22:47,862   adding 'shephard/_version.py'
2022-09-04T00:22:47,867   adding 'shephard/domain.py'
2022-09-04T00:22:47,870   adding 'shephard/exceptions.py'
2022-09-04T00:22:47,873   adding 'shephard/general_utilities.py'
2022-09-04T00:22:47,896   adding 'shephard/protein.py'
2022-09-04T00:22:47,911   adding 'shephard/proteome.py'
2022-09-04T00:22:47,915   adding 'shephard/sequence_utilities.py'
2022-09-04T00:22:47,920   adding 'shephard/site.py'
2022-09-04T00:22:47,922   adding 'shephard/test_domains_sites.py'
2022-09-04T00:22:47,927   adding 'shephard/track.py'
2022-09-04T00:22:47,931   adding 'shephard/apis/__init__.py'
2022-09-04T00:22:47,936   adding 'shephard/apis/fasta.py'
2022-09-04T00:22:47,940   adding 'shephard/apis/uniprot.py'
2022-09-04T00:22:47,943   adding 'shephard/data/README.md'
2022-09-04T00:22:47,945   adding 'shephard/data/look_and_say.dat'
2022-09-04T00:22:47,949   adding 'shephard/data/test_data/TS1_domains_idr.tsv'
2022-09-04T00:22:47,951   adding 'shephard/data/test_data/TS1_domains_idr_and_others.tsv'
2022-09-04T00:22:47,953   adding 'shephard/data/test_data/TS1_domains_pscore.tsv'
2022-09-04T00:22:47,955   adding 'shephard/data/test_data/TS1_protein_attributes.tsv'
2022-09-04T00:22:47,958   adding 'shephard/data/test_data/TS1_sites.tsv'
2022-09-04T00:22:47,979   adding 'shephard/data/test_data/TS1_tracks_pscore.tsv'
2022-09-04T00:22:47,981   adding 'shephard/data/test_data/names.txt'
2022-09-04T00:22:47,985   adding 'shephard/data/test_data/seqs.fasta'
2022-09-04T00:22:47,988   adding 'shephard/data/test_data/testset_1.fasta'
2022-09-04T00:22:47,990   adding 'shephard/data/test_data/testset_1.fasta.fai'
2022-09-04T00:22:47,992   adding 'shephard/data/test_data/testset_1_ptms.tsv'
2022-09-04T00:22:47,994   adding 'shephard/data/test_data/ts1_bonus_sites.tsv'
2022-09-04T00:22:47,997   adding 'shephard/data/test_data/ts1_bonus_sites_bad.tsv'
2022-09-04T00:22:47,999   adding 'shephard/data/test_data/ts1_bonus_sites_bad2.tsv'
2022-09-04T00:22:48,001   adding 'shephard/data/test_data/tst.py'
2022-09-04T00:22:48,004   adding 'shephard/interfaces/__init__.py'
2022-09-04T00:22:48,008   adding 'shephard/interfaces/interface_tools.py'
2022-09-04T00:22:48,015   adding 'shephard/interfaces/si_domains.py'
2022-09-04T00:22:48,020   adding 'shephard/interfaces/si_protein_attributes.py'
2022-09-04T00:22:48,025   adding 'shephard/interfaces/si_proteins.py'
2022-09-04T00:22:48,030   adding 'shephard/interfaces/si_sites.py'
2022-09-04T00:22:48,038   adding 'shephard/interfaces/si_tracks.py'
2022-09-04T00:22:48,042   adding 'shephard/tests/__init__.py'
2022-09-04T00:22:48,045   adding 'shephard/tests/conftest.py'
2022-09-04T00:22:48,047   adding 'shephard/tests/example_test_function.py'
2022-09-04T00:22:48,050   adding 'shephard/tests/test_add_remove_annotations.py'
2022-09-04T00:22:48,053   adding 'shephard/tests/test_apis_fasta.py'
2022-09-04T00:22:48,056   adding 'shephard/tests/test_domain_tools.py'
2022-09-04T00:22:48,059   adding 'shephard/tests/test_domains.py'
2022-09-04T00:22:48,062   adding 'shephard/tests/test_interfaces.py'
2022-09-04T00:22:48,064   adding 'shephard/tests/test_logic.py'
2022-09-04T00:22:48,068   adding 'shephard/tests/test_protein.py'
2022-09-04T00:22:48,071   adding 'shephard/tests/test_proteome.py'
2022-09-04T00:22:48,074   adding 'shephard/tests/test_scratchpad.ipynb'
2022-09-04T00:22:48,077   adding 'shephard/tests/test_sequence_tools.py'
2022-09-04T00:22:48,079   adding 'shephard/tests/test_shephard.py'
2022-09-04T00:22:48,081   adding 'shephard/tests/test_si_domains.py'
2022-09-04T00:22:48,084   adding 'shephard/tests/test_si_sites.py'
2022-09-04T00:22:48,088   adding 'shephard/tests/test_si_tracks.py'
2022-09-04T00:22:48,091   adding 'shephard/tests/test_sites.py'
2022-09-04T00:22:48,093   adding 'shephard/tests/test_track_tools.py'
2022-09-04T00:22:48,096   adding 'shephard/tests/test_tracks.py'
2022-09-04T00:22:48,099   adding 'shephard/tests/.ipynb_checkpoints/test_scratchpad-checkpoint.ipynb'
2022-09-04T00:22:48,102   adding 'shephard/tests/output_test/all_symbols_test.tsv'
2022-09-04T00:22:48,107   adding 'shephard/tests/output_test/all_values_test.tsv'
2022-09-04T00:22:48,112   adding 'shephard/tests/output_test/all_values_test_from_list.tsv'
2022-09-04T00:22:48,134   adding 'shephard/tests/output_test/out_tracks.tsv'
2022-09-04T00:22:48,136   adding 'shephard/tests/output_test/readme.md'
2022-09-04T00:22:48,139   adding 'shephard/tests/output_test/shephard_track_phosres.tsv'
2022-09-04T00:22:48,159   adding 'shephard/tests/output_test/shephard_track_pscore.tsv'
2022-09-04T00:22:48,162   adding 'shephard/tests/output_test/test_domains.tsv'
2022-09-04T00:22:48,169   adding 'shephard/tests/output_test/test_sites.tsv'
2022-09-04T00:22:48,173   adding 'shephard/tests/output_test/track_phospho_track.tsv'
2022-09-04T00:22:48,176   adding 'shephard/tests/output_test/track_random_vals.tsv'
2022-09-04T00:22:48,179   adding 'shephard/tools/__init__.py'
2022-09-04T00:22:48,186   adding 'shephard/tools/domain_tools.py'
2022-09-04T00:22:48,189   adding 'shephard/tools/experimental.py'
2022-09-04T00:22:48,191   adding 'shephard/tools/sequence_tools.py'
2022-09-04T00:22:48,195   adding 'shephard/tools/site_tools.py'
2022-09-04T00:22:48,198   adding 'shephard/tools/track_tools.py'
2022-09-04T00:22:48,206   adding 'shephard-0.1.12.dist-info/LICENSE'
2022-09-04T00:22:48,209   adding 'shephard-0.1.12.dist-info/METADATA'
2022-09-04T00:22:48,210   adding 'shephard-0.1.12.dist-info/WHEEL'
2022-09-04T00:22:48,212   adding 'shephard-0.1.12.dist-info/top_level.txt'
2022-09-04T00:22:48,216   adding 'shephard-0.1.12.dist-info/RECORD'
2022-09-04T00:22:48,226   removing build/bdist.linux-armv7l/wheel
2022-09-04T00:22:48,536   Building wheel for shephard (setup.py): finished with status 'done'
2022-09-04T00:22:48,548   Created wheel for shephard: filename=shephard-0.1.12-py3-none-any.whl size=177588 sha256=11352de9001ada56ef480863bdad4b36727295a16dfd6bdbbb8b4c13523d07ba
2022-09-04T00:22:48,550   Stored in directory: /tmp/pip-ephem-wheel-cache-5_ny9oe_/wheels/65/04/0b/7de91979b4c74c0e7b01bed515d79d4c1e366627ee86538df0
2022-09-04T00:22:48,579 Successfully built shephard
2022-09-04T00:22:48,598 Removed build tracker: '/tmp/pip-build-tracker-z0nwuu9j'