2022-09-08T13:05:29,496 Created temporary directory: /tmp/pip-ephem-wheel-cache-7n12i5s_
2022-09-08T13:05:29,501 Created temporary directory: /tmp/pip-build-tracker-siuq84z8
2022-09-08T13:05:29,502 Initialized build tracking at /tmp/pip-build-tracker-siuq84z8
2022-09-08T13:05:29,502 Created build tracker: /tmp/pip-build-tracker-siuq84z8
2022-09-08T13:05:29,503 Entered build tracker: /tmp/pip-build-tracker-siuq84z8
2022-09-08T13:05:29,504 Created temporary directory: /tmp/pip-wheel-d0jsd5yh
2022-09-08T13:05:29,578 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-09-08T13:05:29,587 2 location(s) to search for versions of pymsa-plot:
2022-09-08T13:05:29,587 * https://pypi.org/simple/pymsa-plot/
2022-09-08T13:05:29,587 * https://www.piwheels.org/simple/pymsa-plot/
2022-09-08T13:05:29,588 Fetching project page and analyzing links: https://pypi.org/simple/pymsa-plot/
2022-09-08T13:05:29,589 Getting page https://pypi.org/simple/pymsa-plot/
2022-09-08T13:05:29,593 Found index url https://pypi.org/simple
2022-09-08T13:05:29,715   Skipping link: No binaries permitted for pymsa-plot: https://files.pythonhosted.org/packages/21/8e/029f40878e0ffcca0ff1389e6617db15638de2b97ce1175da59ed12ca7b9/pymsa_plot-0.0.1-py3-none-any.whl#sha256=53f5f5d717a07d6e39f01c9c72765612f9b07aef07aa07a63f83c901ff65260e (from https://pypi.org/simple/pymsa-plot/) (requires-python:>=3.8)
2022-09-08T13:05:29,717   Found link https://files.pythonhosted.org/packages/a0/ca/282e3ce66837ec94a0ec6dda47ee5764e0e490a3dae83b3c0b23858adbcc/pymsa_plot-0.0.1.tar.gz#sha256=17185e9527828caab8e2f619f969a2d4f9388104bf37224ef754dbd0cf28b5bf (from https://pypi.org/simple/pymsa-plot/) (requires-python:>=3.8), version: 0.0.1
2022-09-08T13:05:29,718 Fetching project page and analyzing links: https://www.piwheels.org/simple/pymsa-plot/
2022-09-08T13:05:29,718 Getting page https://www.piwheels.org/simple/pymsa-plot/
2022-09-08T13:05:29,720 Found index url https://www.piwheels.org/simple
2022-09-08T13:05:29,926 Skipping link: not a file: https://www.piwheels.org/simple/pymsa-plot/
2022-09-08T13:05:29,926 Skipping link: not a file: https://pypi.org/simple/pymsa-plot/
2022-09-08T13:05:29,971 Given no hashes to check 1 links for project 'pymsa-plot': discarding no candidates
2022-09-08T13:05:30,015 Collecting pymsa-plot==0.0.1
2022-09-08T13:05:30,020   Created temporary directory: /tmp/pip-unpack-h3t7al2a
2022-09-08T13:05:30,250   Downloading pymsa_plot-0.0.1.tar.gz (5.0 kB)
2022-09-08T13:05:30,309   Added pymsa-plot==0.0.1 from https://files.pythonhosted.org/packages/a0/ca/282e3ce66837ec94a0ec6dda47ee5764e0e490a3dae83b3c0b23858adbcc/pymsa_plot-0.0.1.tar.gz#sha256=17185e9527828caab8e2f619f969a2d4f9388104bf37224ef754dbd0cf28b5bf to build tracker '/tmp/pip-build-tracker-siuq84z8'
2022-09-08T13:05:30,332   Created temporary directory: /tmp/pip-build-env-omyx8xfa
2022-09-08T13:05:30,353   Created temporary directory: /tmp/pip-standalone-pip-vyb6cmsc
2022-09-08T13:05:32,747   Installing build dependencies: started
2022-09-08T13:05:32,749   Running command pip subprocess to install build dependencies
2022-09-08T13:05:44,050   Using pip 22.1.2 from /tmp/pip-standalone-pip-vyb6cmsc/__env_pip__.zip/pip (python 3.9)
2022-09-08T13:05:45,880   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-09-08T13:05:46,682   Collecting hatchling
2022-09-08T13:05:46,757     Using cached https://www.piwheels.org/simple/hatchling/hatchling-1.8.1-py3-none-any.whl (70 kB)
2022-09-08T13:05:47,069   Collecting seaborn==0.11.2
2022-09-08T13:05:47,164     Using cached https://www.piwheels.org/simple/seaborn/seaborn-0.11.2-py3-none-any.whl (279 kB)
2022-09-08T13:05:50,940   Collecting numpy==1.20.3
2022-09-08T13:05:53,262     Using cached https://www.piwheels.org/simple/numpy/numpy-1.20.3-cp39-cp39-linux_armv7l.whl (11.6 MB)
2022-09-08T13:05:56,156   Collecting scipy==1.7.1
2022-09-08T13:05:56,188     Downloading https://www.piwheels.org/simple/scipy/scipy-1.7.1-cp39-cp39-linux_armv7l.whl (66.6 MB)
2022-09-08T13:06:11,944        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 66.6/66.6 MB 1.8 MB/s eta 0:00:00
2022-09-08T13:06:15,295   Collecting biopython==1.79
2022-09-08T13:06:15,851     Using cached https://www.piwheels.org/simple/biopython/biopython-1.79-cp39-cp39-linux_armv7l.whl (2.5 MB)
2022-09-08T13:06:18,306   Collecting matplotlib==3.4.3
2022-09-08T13:06:18,347     Downloading https://www.piwheels.org/simple/matplotlib/matplotlib-3.4.3-cp39-cp39-linux_armv7l.whl (10.1 MB)
2022-09-08T13:06:20,611        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.1/10.1 MB 4.5 MB/s eta 0:00:00
2022-09-08T13:06:23,433   Collecting pandas>=0.23
2022-09-08T13:06:30,600     Using cached https://www.piwheels.org/simple/pandas/pandas-1.4.3-cp39-cp39-linux_armv7l.whl (36.1 MB)
2022-09-08T13:06:33,992   Collecting cycler>=0.10
2022-09-08T13:06:34,035     Using cached https://www.piwheels.org/simple/cycler/cycler-0.11.0-py3-none-any.whl (6.4 kB)
2022-09-08T13:06:34,353   Collecting python-dateutil>=2.7
2022-09-08T13:06:34,430     Using cached https://www.piwheels.org/simple/python-dateutil/python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
2022-09-08T13:06:35,269   Collecting kiwisolver>=1.0.1
2022-09-08T13:06:35,567     Using cached https://www.piwheels.org/simple/kiwisolver/kiwisolver-1.4.4-cp39-cp39-linux_armv7l.whl (1.1 MB)
2022-09-08T13:06:39,223   Collecting pillow>=6.2.0
2022-09-08T13:06:39,625     Using cached https://www.piwheels.org/simple/pillow/Pillow-9.2.0-cp39-cp39-linux_armv7l.whl (1.1 MB)
2022-09-08T13:06:40,345   Collecting pyparsing>=2.2.1
2022-09-08T13:06:40,460     Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.9-py3-none-any.whl (98 kB)
2022-09-08T13:06:40,874   Collecting tomli>=1.2.2
2022-09-08T13:06:40,906     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2022-09-08T13:06:41,052   Collecting editables>=0.3
2022-09-08T13:06:41,092     Using cached https://www.piwheels.org/simple/editables/editables-0.3-py3-none-any.whl (4.7 kB)
2022-09-08T13:06:41,359   Collecting pluggy>=1.0.0
2022-09-08T13:06:41,396     Using cached https://www.piwheels.org/simple/pluggy/pluggy-1.0.0-py2.py3-none-any.whl (13 kB)
2022-09-08T13:06:41,801   Collecting packaging>=21.3
2022-09-08T13:06:41,836     Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB)
2022-09-08T13:06:42,061   Collecting pathspec>=0.9
2022-09-08T13:06:42,102     Using cached https://www.piwheels.org/simple/pathspec/pathspec-0.10.1-py3-none-any.whl (27 kB)
2022-09-08T13:06:46,195   Collecting pytz>=2020.1
2022-09-08T13:06:46,332     Using cached https://www.piwheels.org/simple/pytz/pytz-2022.2.1-py3-none-any.whl (500 kB)
2022-09-08T13:06:47,072   Collecting six>=1.5
2022-09-08T13:06:47,104     Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB)
2022-09-08T13:06:54,458   Installing collected packages: pytz, tomli, six, pyparsing, pluggy, pillow, pathspec, numpy, kiwisolver, editables, cycler, scipy, python-dateutil, packaging, biopython, pandas, matplotlib, hatchling, seaborn
2022-09-08T13:07:16,333     Creating /tmp/pip-build-env-omyx8xfa/overlay/bin
2022-09-08T13:07:16,337     changing mode of /tmp/pip-build-env-omyx8xfa/overlay/bin/f2py to 755
2022-09-08T13:07:16,341     changing mode of /tmp/pip-build-env-omyx8xfa/overlay/bin/f2py3 to 755
2022-09-08T13:07:16,346     changing mode of /tmp/pip-build-env-omyx8xfa/overlay/bin/f2py3.9 to 755
2022-09-08T13:09:00,640     changing mode of /tmp/pip-build-env-omyx8xfa/overlay/bin/hatchling to 755
2022-09-08T13:09:02,693   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2022-09-08T13:09:02,694   sphinx 5.0.0 requires importlib-metadata>=4.4; python_version < "3.10", but you have importlib-metadata 4.0.1 which is incompatible.
2022-09-08T13:09:02,695   Successfully installed biopython-1.79 cycler-0.11.0 editables-0.3 hatchling-1.8.1 kiwisolver-1.4.4 matplotlib-3.4.3 numpy-1.20.3 packaging-21.3 pandas-1.4.3 pathspec-0.10.1 pillow-9.2.0 pluggy-1.0.0 pyparsing-3.0.9 python-dateutil-2.8.2 pytz-2022.2.1 scipy-1.7.1 seaborn-0.11.2 six-1.16.0 tomli-2.0.1
2022-09-08T13:09:02,913   --- Logging error ---
2022-09-08T13:09:02,931   Traceback (most recent call last):
2022-09-08T13:09:02,932     File "/tmp/pip-standalone-pip-vyb6cmsc/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit
2022-09-08T13:09:02,932       self.console.print(renderable, overflow="ignore", crop=False, style=style)
2022-09-08T13:09:02,932     File "/tmp/pip-standalone-pip-vyb6cmsc/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print
2022-09-08T13:09:02,933       extend(render(renderable, render_options))
2022-09-08T13:09:02,933     File "/tmp/pip-standalone-pip-vyb6cmsc/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render
2022-09-08T13:09:02,934       for render_output in iter_render:
2022-09-08T13:09:02,934     File "/tmp/pip-standalone-pip-vyb6cmsc/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__
2022-09-08T13:09:02,934       for line in lines:
2022-09-08T13:09:02,935     File "/tmp/pip-standalone-pip-vyb6cmsc/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines
2022-09-08T13:09:02,935       for segment in segments:
2022-09-08T13:09:02,935     File "/tmp/pip-standalone-pip-vyb6cmsc/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render
2022-09-08T13:09:02,935       renderable = rich_cast(renderable)
2022-09-08T13:09:02,936     File "/tmp/pip-standalone-pip-vyb6cmsc/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast
2022-09-08T13:09:02,936       renderable = cast_method()
2022-09-08T13:09:02,937     File "/tmp/pip-standalone-pip-vyb6cmsc/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__
2022-09-08T13:09:02,937       pip_cmd = get_best_invocation_for_this_pip()
2022-09-08T13:09:02,937     File "/tmp/pip-standalone-pip-vyb6cmsc/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip
2022-09-08T13:09:02,938       if found_executable and os.path.samefile(
2022-09-08T13:09:02,938     File "/usr/lib/python3.9/genericpath.py", line 101, in samefile
2022-09-08T13:09:02,938       s2 = os.stat(f2)
2022-09-08T13:09:02,939   FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9'
2022-09-08T13:09:02,939   Call stack:
2022-09-08T13:09:02,943     File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main
2022-09-08T13:09:02,944       return _run_code(code, main_globals, None,
2022-09-08T13:09:02,944     File "/usr/lib/python3.9/runpy.py", line 87, in _run_code
2022-09-08T13:09:02,944       exec(code, run_globals)
2022-09-08T13:09:02,945     File "/tmp/pip-standalone-pip-vyb6cmsc/__env_pip__.zip/pip/__main__.py", line 31, in <module>
2022-09-08T13:09:02,945       sys.exit(_main())
2022-09-08T13:09:02,945     File "/tmp/pip-standalone-pip-vyb6cmsc/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main
2022-09-08T13:09:02,945       return command.main(cmd_args)
2022-09-08T13:09:02,946     File "/tmp/pip-standalone-pip-vyb6cmsc/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main
2022-09-08T13:09:02,946       return self._main(args)
2022-09-08T13:09:02,946     File "/tmp/pip-standalone-pip-vyb6cmsc/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main
2022-09-08T13:09:02,947       self.handle_pip_version_check(options)
2022-09-08T13:09:02,947     File "/tmp/pip-standalone-pip-vyb6cmsc/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check
2022-09-08T13:09:02,947       pip_self_version_check(session, options)
2022-09-08T13:09:02,948     File "/tmp/pip-standalone-pip-vyb6cmsc/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check
2022-09-08T13:09:02,948       logger.info("[present-rich] %s", upgrade_prompt)
2022-09-08T13:09:02,948     File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info
2022-09-08T13:09:02,949       self._log(INFO, msg, args, **kwargs)
2022-09-08T13:09:02,949     File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log
2022-09-08T13:09:02,949       self.handle(record)
2022-09-08T13:09:02,949     File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle
2022-09-08T13:09:02,950       self.callHandlers(record)
2022-09-08T13:09:02,950     File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers
2022-09-08T13:09:02,950       hdlr.handle(record)
2022-09-08T13:09:02,951     File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle
2022-09-08T13:09:02,951       self.emit(record)
2022-09-08T13:09:02,951     File "/tmp/pip-standalone-pip-vyb6cmsc/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit
2022-09-08T13:09:02,951       self.handleError(record)
2022-09-08T13:09:02,952   Message: '[present-rich] %s'
2022-09-08T13:09:02,952   Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),)
2022-09-08T13:09:03,929   Installing build dependencies: finished with status 'done'
2022-09-08T13:09:03,957   Getting requirements to build wheel: started
2022-09-08T13:09:03,959   Running command Getting requirements to build wheel
2022-09-08T13:09:04,650   Getting requirements to build wheel: finished with status 'done'
2022-09-08T13:09:04,661   Created temporary directory: /tmp/pip-modern-metadata-x07kwaod
2022-09-08T13:09:04,667   Preparing metadata (pyproject.toml): started
2022-09-08T13:09:04,669   Running command Preparing metadata (pyproject.toml)
2022-09-08T13:09:06,019   Preparing metadata (pyproject.toml): finished with status 'done'
2022-09-08T13:09:06,035   Source in /tmp/pip-wheel-d0jsd5yh/pymsa-plot_ee43c00f38824f0c90ad9efa2794bea7 has version 0.0.1, which satisfies requirement pymsa-plot==0.0.1 from https://files.pythonhosted.org/packages/a0/ca/282e3ce66837ec94a0ec6dda47ee5764e0e490a3dae83b3c0b23858adbcc/pymsa_plot-0.0.1.tar.gz#sha256=17185e9527828caab8e2f619f969a2d4f9388104bf37224ef754dbd0cf28b5bf
2022-09-08T13:09:06,037   Removed pymsa-plot==0.0.1 from https://files.pythonhosted.org/packages/a0/ca/282e3ce66837ec94a0ec6dda47ee5764e0e490a3dae83b3c0b23858adbcc/pymsa_plot-0.0.1.tar.gz#sha256=17185e9527828caab8e2f619f969a2d4f9388104bf37224ef754dbd0cf28b5bf from build tracker '/tmp/pip-build-tracker-siuq84z8'
2022-09-08T13:09:06,050 Created temporary directory: /tmp/pip-unpack-0mwcret5
2022-09-08T13:09:06,051 Building wheels for collected packages: pymsa-plot
2022-09-08T13:09:06,060   Created temporary directory: /tmp/pip-wheel-vrjnsumw
2022-09-08T13:09:06,061   Destination directory: /tmp/pip-wheel-vrjnsumw
2022-09-08T13:09:06,066   Building wheel for pymsa-plot (pyproject.toml): started
2022-09-08T13:09:06,068   Running command Building wheel for pymsa-plot (pyproject.toml)
2022-09-08T13:09:06,394   Building wheel for pymsa-plot (pyproject.toml): finished with status 'done'
2022-09-08T13:09:06,407   Created wheel for pymsa-plot: filename=pymsa_plot-0.0.1-py3-none-any.whl size=4732 sha256=53f5f5d717a07d6e39f01c9c72765612f9b07aef07aa07a63f83c901ff65260e
2022-09-08T13:09:06,409   Stored in directory: /tmp/pip-ephem-wheel-cache-7n12i5s_/wheels/e0/9f/87/39348e3fdd4f241a3ebb72dee6b36afb1df73e257c5f4ffa7a
2022-09-08T13:09:06,429 Successfully built pymsa-plot
2022-09-08T13:09:06,436 Removed build tracker: '/tmp/pip-build-tracker-siuq84z8'