2022-09-08T21:28:49,447 Created temporary directory: /tmp/pip-ephem-wheel-cache-r0fz3wch 2022-09-08T21:28:49,452 Created temporary directory: /tmp/pip-build-tracker-3ae49bfn 2022-09-08T21:28:49,453 Initialized build tracking at /tmp/pip-build-tracker-3ae49bfn 2022-09-08T21:28:49,453 Created build tracker: /tmp/pip-build-tracker-3ae49bfn 2022-09-08T21:28:49,454 Entered build tracker: /tmp/pip-build-tracker-3ae49bfn 2022-09-08T21:28:49,455 Created temporary directory: /tmp/pip-wheel-ybs173k4 2022-09-08T21:28:49,524 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-09-08T21:28:49,532 2 location(s) to search for versions of genovi: 2022-09-08T21:28:49,532 * https://pypi.org/simple/genovi/ 2022-09-08T21:28:49,532 * https://www.piwheels.org/simple/genovi/ 2022-09-08T21:28:49,533 Fetching project page and analyzing links: https://pypi.org/simple/genovi/ 2022-09-08T21:28:49,534 Getting page https://pypi.org/simple/genovi/ 2022-09-08T21:28:49,538 Found index url 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https://files.pythonhosted.org/packages/ba/64/02d3fe054de0fc2f03510a7cacad497ba02eec7d0b87a9fcb3a392001458/genovi-0.1.12.tar.gz#sha256=8467da5558b1e2dd1dabe2c62a15dd70949da123651fa515c0a4ffdac5be6b27 (from https://pypi.org/simple/genovi/), version: 0.1.12 2022-09-08T21:28:49,755 Found link https://files.pythonhosted.org/packages/38/51/aff4397b6cbd2b9cdd3d4ebc6cc1ab8cb7d23c61cca3881c1cd4ca466762/genovi-0.1.13.tar.gz#sha256=bf4e494d04cee3842cc59c3348a7a39b623e730813777d80f8387aa81cbe9240 (from https://pypi.org/simple/genovi/), version: 0.1.13 2022-09-08T21:28:49,756 Found link https://files.pythonhosted.org/packages/6f/c5/02474d7e10a44cf05dcd719384653a50c4fe999ec68c064bdd64f4c993a5/genovi-0.1.14.tar.gz#sha256=4a255d0388690ccbca65bcf59b435b3aaa35de00aab6ebc7b03354f56b7216ca (from https://pypi.org/simple/genovi/), version: 0.1.14 2022-09-08T21:28:49,757 Found link https://files.pythonhosted.org/packages/e1/01/9f3fef2a3e6a6430d9b5ce8f400f3952b0b33d388cd99d0c5accc3abc4b2/genovi-0.2.0.tar.gz#sha256=f58d290cd15eb8472c0917958f2bf963fae92e92d52ae0a5f86a1ca5418a505f (from https://pypi.org/simple/genovi/), version: 0.2.0 2022-09-08T21:28:49,758 Found link https://files.pythonhosted.org/packages/b9/c1/113f179e4b80887710fde0cd026d10e73e72a32cedbb8d8d720319174868/genovi-0.2.1.tar.gz#sha256=a83c33b8cf9c309e9d5afcc0fc8ae22ea2abdf11d97a7748f720c1d539267607 (from https://pypi.org/simple/genovi/), version: 0.2.1 2022-09-08T21:28:49,758 Found link https://files.pythonhosted.org/packages/dc/b6/e1b84d3a4e775cbfd875c83055d0f6c22f25c94fcfbcd4484039ddb65e3c/genovi-0.2.2.tar.gz#sha256=c4699d52d2613e72ca018c37b06b96f17724ada10bf28f954397668848299798 (from https://pypi.org/simple/genovi/), version: 0.2.2 2022-09-08T21:28:49,759 Found link https://files.pythonhosted.org/packages/9f/79/00a50e3f7a8ddc8e8d86bb9eae23adc48a50bbfb81245f68de087c9af37e/genovi-0.2.3.tar.gz#sha256=80c1d41f3cdfd18e9325145229f02020d3d67db6a7c07fb0839c8a24759fe3cb (from https://pypi.org/simple/genovi/), version: 0.2.3 2022-09-08T21:28:49,760 Found link https://files.pythonhosted.org/packages/e6/a9/9aa986ab956bd22915e8a6d5b49d674a49a5e6d9d1093a8048a56398bf6a/genovi-0.2.4.tar.gz#sha256=85984337d1134f4d9a4663e0ce686eb3157a362e87e6fdbc32514744fada8737 (from https://pypi.org/simple/genovi/), version: 0.2.4 2022-09-08T21:28:49,760 Found link https://files.pythonhosted.org/packages/47/3f/f0c82b7a8cf5c29e79ac58de0fb9ea339e123ce6f35ba984e5618f226005/genovi-0.2.5.tar.gz#sha256=5d69c138e7577f12e16b9344c4a5ee586a13924bc32645603f948aceaeb5b252 (from https://pypi.org/simple/genovi/), version: 0.2.5 2022-09-08T21:28:49,761 Found link https://files.pythonhosted.org/packages/21/be/3846ce45858368c7671c70c20009cd9be8bb63429077a38ac74fd7809ef2/genovi-0.2.7.tar.gz#sha256=82dd7ff8606cc89e3f62288083b83020f334923905615191204b31b5c323f35e (from https://pypi.org/simple/genovi/), version: 0.2.7 2022-09-08T21:28:49,762 Found link https://files.pythonhosted.org/packages/61/f1/8169934fdd91c777af024789c964dad4c89265a25237e3839f9d4fb329a0/genovi-0.2.8.tar.gz#sha256=fed609ec68843ebd1cc38ffd74832cb3e9c4cad4c8eb590093f05154456224d5 (from https://pypi.org/simple/genovi/), version: 0.2.8 2022-09-08T21:28:49,762 Found link https://files.pythonhosted.org/packages/68/36/0e47e71b1f513f2c6e58b789350122b34c755cb4c6228ccf694af5a59ece/genovi-0.2.9.tar.gz#sha256=05e97d2646aa661713723a6220c8ecfce127622f97518a33a1856495657d6d42 (from https://pypi.org/simple/genovi/), version: 0.2.9 2022-09-08T21:28:49,763 Found link https://files.pythonhosted.org/packages/aa/0b/8b02c29209357ddb84073410d85490933354c751b45af0d5d3d7ac899cfc/genovi-0.2.10.tar.gz#sha256=86e9cd55c4045cd13a93535365ecc1b199b45674486230048721a24fc43688ef (from https://pypi.org/simple/genovi/), version: 0.2.10 2022-09-08T21:28:49,764 Found link https://files.pythonhosted.org/packages/d1/3e/6faadc869df781762380a57330ad9f5645bb0d02bf6d134adacb24c42d43/genovi-0.2.11.tar.gz#sha256=fc865ee6c00ca292c77c9cc97aaf8eba61c52e8c1712b8e08bd3cc4180b7f322 (from https://pypi.org/simple/genovi/), version: 0.2.11 2022-09-08T21:28:49,765 Found link https://files.pythonhosted.org/packages/b1/70/134c1584586736b81e03c7ce0c1ec12177f3eac622fe4ad0e2150b9dd01b/genovi-0.2.12.tar.gz#sha256=3679e129b2824c05b4cd14d3db14e69f018fb39d9a9bbf46362e3c1767f2aa1e (from https://pypi.org/simple/genovi/), version: 0.2.12 2022-09-08T21:28:49,765 Found link https://files.pythonhosted.org/packages/60/51/a732b96fee76d075622cff5c35458a7a62d513a1cf2b14ba294e7127d5bd/genovi-0.2.13.tar.gz#sha256=6145d1cff4a92622f8871433b0389064902ad3fdf3fa19665cf50a8ad4a40cd0 (from https://pypi.org/simple/genovi/), version: 0.2.13 2022-09-08T21:28:49,766 Fetching project page and analyzing links: https://www.piwheels.org/simple/genovi/ 2022-09-08T21:28:49,767 Getting page https://www.piwheels.org/simple/genovi/ 2022-09-08T21:28:49,769 Found index url https://www.piwheels.org/simple 2022-09-08T21:28:50,002 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.12-py3-none-any.whl#sha256=9d0a031c550027cd107132c3af37f6a6ac00562ed24375002b0980b88a00fd9b (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,003 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.11-py3-none-any.whl#sha256=03fa8255fdd61ba26bb2625e1bdd06fb794b168c8876703504f12b6982aebc09 (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,003 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.10-py3-none-any.whl#sha256=b692d8fcacebae0b551abc0ac0d535f44d5cebcb901467329bef75c5ec8f4221 (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,004 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.9-py3-none-any.whl#sha256=be1f6746919ce0b4ad3caa40d8c3632d68fe194f85832a8c7f9f61ff8bdbd6ad (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,005 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.8-py3-none-any.whl#sha256=755192be4c5e1940f0d1a48897927a4e1beab6149b8180ccb13e24f71e54d09c (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,005 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.7-py3-none-any.whl#sha256=00802380da5aa14459c624ca7f267c2a3e92bee536e28f630149a76951f76ca8 (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,006 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.5-py3-none-any.whl#sha256=3053498c2d11887ff5167b55481d4ff672fe976271acf09ab1778fa0d2880e1a (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,006 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.4-py3-none-any.whl#sha256=66ad89b0bb34ba728fe883fb4d09ac35cba8640ff940f3552c2b2068e6550521 (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,007 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.3-py3-none-any.whl#sha256=6c07435fc6bbc3d07cdc22d85c5d926088f5f49f5603ebaadba5897cd02d706e (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,007 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.2-py3-none-any.whl#sha256=444bfc444e37538289537fb00c1db1fa23eae893f5618387b677cdfbdcd79125 (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,008 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.1-py3-none-any.whl#sha256=a0821540c111ff88aed81d98be243fdd00acfef15eccce78ca55100731bb7ea4 (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,008 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.2.0-py3-none-any.whl#sha256=69ac6bd8020c036362409139e8b8cc751fbda31e2a18191f1d836eff9107ded9 (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,009 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.1.14-py3-none-any.whl#sha256=3b3740e3cf06d886e4c08e3ff8b3cb7bbdfce95d7c2f39a8b52ba60377454d33 (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,009 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.1.13-py3-none-any.whl#sha256=80d37d113ad10058c7751c0bd39e212d919b28df23a351fa41f8d36828095b06 (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,010 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.1.12-py3-none-any.whl#sha256=a0a616960db2d66dd272e376e3e51ae6534e139cf6cd6e059a90e7f38a52defc (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,011 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.1.11-py3-none-any.whl#sha256=f31af5e801ca94456cc163f8e583014147e7d82aa42edce01e08baf47d1b3764 (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,011 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.1.10-py3-none-any.whl#sha256=66375107b070e9bda83b88c0960e4ea213f78ec10869c017c8a178156361e0d4 (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,012 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/GenoVi-0.1.9-py3-none-any.whl#sha256=872d4aaf69f70129fc66bcc995e39c04edb99755b09616ea052d8bc07394f1da (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,012 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.1.8-py3-none-any.whl#sha256=4e3526bace0a2bdb36257218c092fdf2b4f89b9357e368fed9a1cbd35b5df46a (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,013 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/genovi-0.1.7-py3-none-any.whl#sha256=c25cda7251672edf1463d5d55be59e45ef509c8b52cd544eebe7eeb91eb97396 (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,013 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/GenoVi-0.1.6-py3-none-any.whl#sha256=715e0c036ad9630f1a8d2e8e07a6721b7550bd14ff6dc9c672912e55fc2e9d48 (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,014 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/GenoVi-0.1.5-py3-none-any.whl#sha256=db788f0c5588064ea710bfac623769fa9381bd9f462ed4e3abcbec4674a5cf54 (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,014 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/GenoVi-0.1.4-py3-none-any.whl#sha256=6a2f5e571c6645a03bfd6913a7368ef70f413891cf615902e49cc433ac07979c (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,015 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/GenoVi-0.1.3-py3-none-any.whl#sha256=b9f56b70625623794248440671e3c9b1f88f8b9a9f2a5b6f234ca84e55d3e45f (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,015 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/GenoVi-0.1.2-py3-none-any.whl#sha256=a3395463541352b4afdb6bf7755deae4716e267e696aebd006f22930449c7950 (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,016 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/GenoVi-0.1.1-py3-none-any.whl#sha256=c623884511043e93b73512ce7aa137d9b08a77fee1bc0d18a31211c174b89259 (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,016 Skipping link: No binaries permitted for genovi: https://www.piwheels.org/simple/genovi/GenoVi-0.1-py3-none-any.whl#sha256=dd45e4f285e679551393c388a2c9ef23ce3e99f86557a385d831baab425ed51c (from https://www.piwheels.org/simple/genovi/) 2022-09-08T21:28:50,017 Skipping link: not a file: https://www.piwheels.org/simple/genovi/ 2022-09-08T21:28:50,017 Skipping link: not a file: https://pypi.org/simple/genovi/ 2022-09-08T21:28:50,060 Given no hashes to check 1 links for project 'genovi': discarding no candidates 2022-09-08T21:28:50,092 Collecting genovi==0.2.13 2022-09-08T21:28:50,096 Created temporary directory: /tmp/pip-unpack-fvkscbs3 2022-09-08T21:28:50,556 Downloading genovi-0.2.13.tar.gz (153 kB) 2022-09-08T21:28:50,773 Added genovi==0.2.13 from https://files.pythonhosted.org/packages/60/51/a732b96fee76d075622cff5c35458a7a62d513a1cf2b14ba294e7127d5bd/genovi-0.2.13.tar.gz#sha256=6145d1cff4a92622f8871433b0389064902ad3fdf3fa19665cf50a8ad4a40cd0 to build tracker '/tmp/pip-build-tracker-3ae49bfn' 2022-09-08T21:28:50,776 Running setup.py (path:/tmp/pip-wheel-ybs173k4/genovi_45cd71d2958e44268d30053cf208939d/setup.py) egg_info for package genovi 2022-09-08T21:28:50,777 Created temporary directory: /tmp/pip-pip-egg-info-hzhdvcx5 2022-09-08T21:28:50,778 Preparing metadata (setup.py): started 2022-09-08T21:28:50,780 Running command python setup.py egg_info 2022-09-08T21:29:00,065 scripts __init__.py 2022-09-08T21:29:00,067 #from .GenoVi import change_background, visualiseGenome, get_args, main 2022-09-08T21:29:00,067 #from .addText import addText 2022-09-08T21:29:00,067 #from .colors import parseColors 2022-09-08T21:29:00,068 #from .create_raw import getArgs, listdir_r, ends_sorted, create_kar, create_feature, base_complete, base, get_categories, create_kar_complete, create_feature_complete, new_loc, write_cog_files, write_lines, createRaw 2022-09-08T21:29:00,068 #from .createConf import create_conf, create_conf_main 2022-09-08T21:29:00,068 #from .GC_analysis import get_args_, write_content, generate_result, makeGC, createGC 2022-09-08T21:29:00,069 #from .genbank2faa import modify_locus, genbankToFaa, mainFaa 2022-09-08T21:29:00,069 #from .genbank2fna import gbkToFna, mainFna 2022-09-08T21:29:00,070 #from .mergeImages import mergeImages 2022-09-08T21:29:00,071 #__all__ = ['change_background', 'visualiseGenome', 'get_args', 'main', 'addText', 'parseColors', 'getArgs', 2022-09-08T21:29:00,071 # 'listdir_r', 'ends_sorted', 'create_kar', 'create_feature', 'base_complete', 'base', 'get_categories', 2022-09-08T21:29:00,071 # 'create_kar_complete', 'create_feature_complete', 'new_loc', 'write_cog_files', 'write_lines', 2022-09-08T21:29:00,072 # 'createRaw', 'create_conf', 'create_conf_main', 'get_args_', 'write_content', 'generate_result', 2022-09-08T21:29:00,072 # 'makeGC', 'createGC', 'modify_locus', 'genbankToFaa', 'mainFaa', 'gbkToFna', 'mainFna', 'mergeImages', 2022-09-08T21:29:00,072 # '__version__' 2022-09-08T21:29:00,073 # ] 2022-09-08T21:29:00,073 __version__ = '0.2.13' 2022-09-08T21:29:00,074 __all__ = ['__version__'] 2022-09-08T21:29:00,074 running egg_info 2022-09-08T21:29:00,075 creating /tmp/pip-pip-egg-info-hzhdvcx5/genovi.egg-info 2022-09-08T21:29:00,821 writing /tmp/pip-pip-egg-info-hzhdvcx5/genovi.egg-info/PKG-INFO 2022-09-08T21:29:01,424 writing dependency_links to /tmp/pip-pip-egg-info-hzhdvcx5/genovi.egg-info/dependency_links.txt 2022-09-08T21:29:03,218 writing entry points to /tmp/pip-pip-egg-info-hzhdvcx5/genovi.egg-info/entry_points.txt 2022-09-08T21:29:04,414 writing requirements to /tmp/pip-pip-egg-info-hzhdvcx5/genovi.egg-info/requires.txt 2022-09-08T21:29:05,015 writing top-level names to /tmp/pip-pip-egg-info-hzhdvcx5/genovi.egg-info/top_level.txt 2022-09-08T21:29:05,018 writing manifest file '/tmp/pip-pip-egg-info-hzhdvcx5/genovi.egg-info/SOURCES.txt' 2022-09-08T21:29:06,100 reading manifest file '/tmp/pip-pip-egg-info-hzhdvcx5/genovi.egg-info/SOURCES.txt' 2022-09-08T21:29:06,104 reading manifest template 'MANIFEST.in' 2022-09-08T21:29:06,106 adding license file 'LICENSE.txt' 2022-09-08T21:29:06,111 writing manifest file '/tmp/pip-pip-egg-info-hzhdvcx5/genovi.egg-info/SOURCES.txt' 2022-09-08T21:29:06,113 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2022-09-08T21:29:06,114 % (opt, underscore_opt) 2022-09-08T21:29:06,335 Preparing metadata (setup.py): finished with status 'done' 2022-09-08T21:29:06,346 Source in /tmp/pip-wheel-ybs173k4/genovi_45cd71d2958e44268d30053cf208939d has version 0.2.13, which satisfies requirement genovi==0.2.13 from https://files.pythonhosted.org/packages/60/51/a732b96fee76d075622cff5c35458a7a62d513a1cf2b14ba294e7127d5bd/genovi-0.2.13.tar.gz#sha256=6145d1cff4a92622f8871433b0389064902ad3fdf3fa19665cf50a8ad4a40cd0 2022-09-08T21:29:06,348 Removed genovi==0.2.13 from https://files.pythonhosted.org/packages/60/51/a732b96fee76d075622cff5c35458a7a62d513a1cf2b14ba294e7127d5bd/genovi-0.2.13.tar.gz#sha256=6145d1cff4a92622f8871433b0389064902ad3fdf3fa19665cf50a8ad4a40cd0 from build tracker '/tmp/pip-build-tracker-3ae49bfn' 2022-09-08T21:29:06,357 Created temporary directory: /tmp/pip-unpack-97s26u_5 2022-09-08T21:29:06,359 Building wheels for collected packages: genovi 2022-09-08T21:29:06,369 Created temporary directory: /tmp/pip-wheel-588eqowj 2022-09-08T21:29:06,370 Building wheel for genovi (setup.py): started 2022-09-08T21:29:06,371 Destination directory: /tmp/pip-wheel-588eqowj 2022-09-08T21:29:06,372 Running command python setup.py bdist_wheel 2022-09-08T21:29:09,232 scripts __init__.py 2022-09-08T21:29:09,233 #from .GenoVi import change_background, visualiseGenome, get_args, main 2022-09-08T21:29:09,233 #from .addText import addText 2022-09-08T21:29:09,234 #from .colors import parseColors 2022-09-08T21:29:09,234 #from .create_raw import getArgs, listdir_r, ends_sorted, create_kar, create_feature, base_complete, base, get_categories, create_kar_complete, create_feature_complete, new_loc, write_cog_files, write_lines, createRaw 2022-09-08T21:29:09,234 #from .createConf import create_conf, create_conf_main 2022-09-08T21:29:09,235 #from .GC_analysis import get_args_, write_content, generate_result, makeGC, createGC 2022-09-08T21:29:09,235 #from .genbank2faa import modify_locus, genbankToFaa, mainFaa 2022-09-08T21:29:09,236 #from .genbank2fna import gbkToFna, mainFna 2022-09-08T21:29:09,236 #from .mergeImages import mergeImages 2022-09-08T21:29:09,237 #__all__ = ['change_background', 'visualiseGenome', 'get_args', 'main', 'addText', 'parseColors', 'getArgs', 2022-09-08T21:29:09,237 # 'listdir_r', 'ends_sorted', 'create_kar', 'create_feature', 'base_complete', 'base', 'get_categories', 2022-09-08T21:29:09,238 # 'create_kar_complete', 'create_feature_complete', 'new_loc', 'write_cog_files', 'write_lines', 2022-09-08T21:29:09,238 # 'createRaw', 'create_conf', 'create_conf_main', 'get_args_', 'write_content', 'generate_result', 2022-09-08T21:29:09,238 # 'makeGC', 'createGC', 'modify_locus', 'genbankToFaa', 'mainFaa', 'gbkToFna', 'mainFna', 'mergeImages', 2022-09-08T21:29:09,238 # '__version__' 2022-09-08T21:29:09,239 # ] 2022-09-08T21:29:09,240 __version__ = '0.2.13' 2022-09-08T21:29:09,240 __all__ = ['__version__'] 2022-09-08T21:29:09,454 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2022-09-08T21:29:09,454 % (opt, underscore_opt) 2022-09-08T21:29:15,231 running bdist_wheel 2022-09-08T21:29:16,974 running build 2022-09-08T21:29:16,974 running build_py 2022-09-08T21:29:17,792 creating build 2022-09-08T21:29:17,793 creating build/lib 2022-09-08T21:29:17,794 creating build/lib/scripts 2022-09-08T21:29:17,797 copying scripts/genbank2fna.py -> build/lib/scripts 2022-09-08T21:29:17,801 copying scripts/create_raw.py -> build/lib/scripts 2022-09-08T21:29:17,806 copying scripts/__init__.py -> build/lib/scripts 2022-09-08T21:29:17,810 copying scripts/genbank2faa.py -> build/lib/scripts 2022-09-08T21:29:17,815 copying scripts/GenoVi.py -> build/lib/scripts 2022-09-08T21:29:17,821 copying scripts/mergeImages.py -> build/lib/scripts 2022-09-08T21:29:17,826 copying scripts/GC_analysis.py -> build/lib/scripts 2022-09-08T21:29:17,831 copying scripts/createConf.py -> build/lib/scripts 2022-09-08T21:29:17,837 copying scripts/colours.py -> build/lib/scripts 2022-09-08T21:29:17,843 copying scripts/addText.py -> build/lib/scripts 2022-09-08T21:29:17,849 copying scripts/create_tables.py -> build/lib/scripts 2022-09-08T21:29:17,852 running egg_info 2022-09-08T21:29:19,379 writing genovi.egg-info/PKG-INFO 2022-09-08T21:29:19,978 writing dependency_links to genovi.egg-info/dependency_links.txt 2022-09-08T21:29:21,776 writing entry points to genovi.egg-info/entry_points.txt 2022-09-08T21:29:22,969 writing requirements to genovi.egg-info/requires.txt 2022-09-08T21:29:23,570 writing top-level names to genovi.egg-info/top_level.txt 2022-09-08T21:29:23,729 reading manifest file 'genovi.egg-info/SOURCES.txt' 2022-09-08T21:29:23,734 reading manifest template 'MANIFEST.in' 2022-09-08T21:29:23,735 adding license file 'LICENSE.txt' 2022-09-08T21:29:23,741 writing manifest file 'genovi.egg-info/SOURCES.txt' 2022-09-08T21:29:23,746 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-09-08T21:29:23,747 ############################ 2022-09-08T21:29:23,747 # Package would be ignored # 2022-09-08T21:29:23,747 ############################ 2022-09-08T21:29:23,748 Python recognizes 'scripts.dataset' as an importable package, however it is 2022-09-08T21:29:23,748 included in the distribution as "data". 2022-09-08T21:29:23,748 This behavior is likely to change in future versions of setuptools (and 2022-09-08T21:29:23,749 therefore is considered deprecated). 2022-09-08T21:29:23,749 Please make sure that 'scripts.dataset' is included as a package by using 2022-09-08T21:29:23,750 setuptools' `packages` configuration field or the proper discovery methods. 2022-09-08T21:29:23,750 You can read more about "package discovery" and "data files" on setuptools 2022-09-08T21:29:23,751 documentation page. 2022-09-08T21:29:23,751 !! 2022-09-08T21:29:23,752 check.warn(importable) 2022-09-08T21:29:23,752 creating build/lib/scripts/dataset 2022-09-08T21:29:23,753 copying scripts/dataset/cog-20.def.tab -> build/lib/scripts/dataset 2022-09-08T21:29:24,527 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-09-08T21:29:24,527 setuptools.SetuptoolsDeprecationWarning, 2022-09-08T21:29:25,281 installing to build/bdist.linux-armv7l/wheel 2022-09-08T21:29:25,281 running install 2022-09-08T21:29:25,341 running install_lib 2022-09-08T21:29:26,095 creating build/bdist.linux-armv7l 2022-09-08T21:29:26,096 creating build/bdist.linux-armv7l/wheel 2022-09-08T21:29:26,099 creating build/bdist.linux-armv7l/wheel/scripts 2022-09-08T21:29:26,101 copying build/lib/scripts/genbank2fna.py -> build/bdist.linux-armv7l/wheel/scripts 2022-09-08T21:29:26,105 copying build/lib/scripts/create_raw.py -> build/bdist.linux-armv7l/wheel/scripts 2022-09-08T21:29:26,110 copying build/lib/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/scripts 2022-09-08T21:29:26,113 copying build/lib/scripts/genbank2faa.py -> build/bdist.linux-armv7l/wheel/scripts 2022-09-08T21:29:26,117 copying build/lib/scripts/GenoVi.py -> build/bdist.linux-armv7l/wheel/scripts 2022-09-08T21:29:26,122 copying build/lib/scripts/mergeImages.py -> build/bdist.linux-armv7l/wheel/scripts 2022-09-08T21:29:26,126 copying build/lib/scripts/GC_analysis.py -> build/bdist.linux-armv7l/wheel/scripts 2022-09-08T21:29:26,130 copying build/lib/scripts/createConf.py -> build/bdist.linux-armv7l/wheel/scripts 2022-09-08T21:29:26,134 copying build/lib/scripts/colours.py -> build/bdist.linux-armv7l/wheel/scripts 2022-09-08T21:29:26,140 creating build/bdist.linux-armv7l/wheel/scripts/dataset 2022-09-08T21:29:26,141 copying build/lib/scripts/dataset/cog-20.def.tab -> build/bdist.linux-armv7l/wheel/scripts/dataset 2022-09-08T21:29:26,163 copying build/lib/scripts/addText.py -> build/bdist.linux-armv7l/wheel/scripts 2022-09-08T21:29:26,168 copying build/lib/scripts/create_tables.py -> build/bdist.linux-armv7l/wheel/scripts 2022-09-08T21:29:26,171 running install_egg_info 2022-09-08T21:29:26,947 Copying genovi.egg-info to build/bdist.linux-armv7l/wheel/genovi-0.2.13-py3.7.egg-info 2022-09-08T21:29:26,971 running install_scripts 2022-09-08T21:29:27,164 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2022-09-08T21:29:27,172 creating build/bdist.linux-armv7l/wheel/genovi-0.2.13.dist-info/WHEEL 2022-09-08T21:29:27,177 creating '/tmp/pip-wheel-588eqowj/genovi-0.2.13-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-09-08T21:29:27,186 adding 'scripts/GC_analysis.py' 2022-09-08T21:29:27,193 adding 'scripts/GenoVi.py' 2022-09-08T21:29:27,197 adding 'scripts/__init__.py' 2022-09-08T21:29:27,203 adding 'scripts/addText.py' 2022-09-08T21:29:27,207 adding 'scripts/colours.py' 2022-09-08T21:29:27,215 adding 'scripts/createConf.py' 2022-09-08T21:29:27,223 adding 'scripts/create_raw.py' 2022-09-08T21:29:27,227 adding 'scripts/create_tables.py' 2022-09-08T21:29:27,230 adding 'scripts/genbank2faa.py' 2022-09-08T21:29:27,234 adding 'scripts/genbank2fna.py' 2022-09-08T21:29:27,238 adding 'scripts/mergeImages.py' 2022-09-08T21:29:27,378 adding 'scripts/dataset/cog-20.def.tab' 2022-09-08T21:29:27,388 adding 'genovi-0.2.13.dist-info/LICENSE.txt' 2022-09-08T21:29:27,391 adding 'genovi-0.2.13.dist-info/METADATA' 2022-09-08T21:29:27,393 adding 'genovi-0.2.13.dist-info/WHEEL' 2022-09-08T21:29:27,395 adding 'genovi-0.2.13.dist-info/entry_points.txt' 2022-09-08T21:29:27,398 adding 'genovi-0.2.13.dist-info/top_level.txt' 2022-09-08T21:29:27,400 adding 'genovi-0.2.13.dist-info/RECORD' 2022-09-08T21:29:27,409 removing build/bdist.linux-armv7l/wheel 2022-09-08T21:29:27,696 Building wheel for genovi (setup.py): finished with status 'done' 2022-09-08T21:29:27,708 Created wheel for genovi: filename=genovi-0.2.13-py3-none-any.whl size=157904 sha256=1d87ddd101bc4c7f7b112390e6f1ada5024b5229b98578fbd6afe3b303268a88 2022-09-08T21:29:27,710 Stored in directory: /tmp/pip-ephem-wheel-cache-r0fz3wch/wheels/45/ee/58/660964f432b0f26ca38f054f0fa72820234c65d7323568ea5a 2022-09-08T21:29:27,733 Successfully built genovi 2022-09-08T21:29:27,756 Removed build tracker: '/tmp/pip-build-tracker-3ae49bfn'