2022-09-09T09:52:05,096 Created temporary directory: /tmp/pip-ephem-wheel-cache-qnmyq2e6 2022-09-09T09:52:05,102 Created temporary directory: /tmp/pip-build-tracker-s3m_zd7a 2022-09-09T09:52:05,102 Initialized build tracking at /tmp/pip-build-tracker-s3m_zd7a 2022-09-09T09:52:05,103 Created build tracker: /tmp/pip-build-tracker-s3m_zd7a 2022-09-09T09:52:05,103 Entered build tracker: /tmp/pip-build-tracker-s3m_zd7a 2022-09-09T09:52:05,104 Created temporary directory: /tmp/pip-wheel-bk092z28 2022-09-09T09:52:05,177 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-09-09T09:52:05,185 2 location(s) to search for versions of mitos: 2022-09-09T09:52:05,185 * https://pypi.org/simple/mitos/ 2022-09-09T09:52:05,185 * https://www.piwheels.org/simple/mitos/ 2022-09-09T09:52:05,186 Fetching project page and analyzing links: https://pypi.org/simple/mitos/ 2022-09-09T09:52:05,187 Getting page https://pypi.org/simple/mitos/ 2022-09-09T09:52:05,191 Found index url https://pypi.org/simple 2022-09-09T09:52:05,386 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/ae/2d/5f1e66a046e59cf6088f44d4a02cae66d498e226365af5fd42e2d660a814/mitos-1.0-py2-none-any.whl#sha256=8231d691ae63545671137f78273b95ecb414c2d741f76d9246bd46c3db4fe1ce (from https://pypi.org/simple/mitos/) 2022-09-09T09:52:05,387 Found link https://files.pythonhosted.org/packages/c5/6e/e1aae4079b0ebbce64897f54f5cd4a3953a0cb741026d16e14e7ae272a48/mitos-1.0.tar.gz#sha256=222d58b100e37887a073129ed79850526188511853b780dd3d11fc9a03c5f61c (from https://pypi.org/simple/mitos/), version: 1.0 2022-09-09T09:52:05,388 Found link https://files.pythonhosted.org/packages/d7/19/816780e09ecc6a783f146d80bcde73eb7940d074f4feea137ec954bfd437/mitos-1.0.1.tar.gz#sha256=de00eecb47f5a67c4a27104c87b4d6e26f1c9eddc86369864f7aed1b486c21c6 (from https://pypi.org/simple/mitos/), version: 1.0.1 2022-09-09T09:52:05,388 Found link https://files.pythonhosted.org/packages/38/c7/3dd90bcf0d61c69226ef1632baa3ad0e96d798de36053b4b56ed7660dfdb/mitos-1.0.2.tar.gz#sha256=321dba26e0bb1eefe71ccfac1da1a2ac65c2aa0a797c02375e8d40b9463928c5 (from https://pypi.org/simple/mitos/), version: 1.0.2 2022-09-09T09:52:05,389 Found link https://files.pythonhosted.org/packages/e2/d4/864af2605cc1f45cc78cfed740bbdfba1da59ea9a42c24ef5077c9218501/mitos-1.0.3.tar.gz#sha256=bce4c949809f1f6b05800ae1e750dc4348c01310e2a89716e7811bba9b5807f2 (from https://pypi.org/simple/mitos/), version: 1.0.3 2022-09-09T09:52:05,390 Found link https://files.pythonhosted.org/packages/8d/32/1aa5eb88f964c3cf5441622648cc4ae30f115db32bdd5dc5bf194a3c112c/mitos-1.0.4.tar.gz#sha256=891b17e6b58808b9485bcf40ae0f349f9a3ec196e2a953d9494c286cd50322b3 (from https://pypi.org/simple/mitos/), version: 1.0.4 2022-09-09T09:52:05,391 Found link https://files.pythonhosted.org/packages/ff/49/f4c711126604aa86abeeda44378786a0903bc53970acf4afa5feb68f72b8/mitos-1.0.5.tar.gz#sha256=b626b066e8b50232e750a96157016ab792f63a7a44d8d5d5fe3f79a2c8279038 (from https://pypi.org/simple/mitos/), version: 1.0.5 2022-09-09T09:52:05,391 Found link https://files.pythonhosted.org/packages/ce/33/46fd40fd9f4c11f5bf296c2c092f59e36dee233d71a0f032b34c2a64c7ba/mitos-1.1.0.tar.gz#sha256=b1abb1936610d85f5f9119e032370ca0cff59e077a2cd732cba2859ea94157e5 (from https://pypi.org/simple/mitos/), version: 1.1.0 2022-09-09T09:52:05,392 Found link https://files.pythonhosted.org/packages/f3/fa/7e2b9cef0d99e7792077a4c1116dc9bbe4c085e7b89ea79b74474c00b2b1/mitos-2.0.1.tar.gz#sha256=cc622e1f408b04f840f9c11db1f5639c7ce5798869728bd65fcda1fd4d228099 (from https://pypi.org/simple/mitos/), version: 2.0.1 2022-09-09T09:52:05,393 Found link https://files.pythonhosted.org/packages/d7/53/5d215fe8689055dd329a27202f9dc7f66e23548f3d2ad3fa55d98dc56988/mitos-2.0.2.tar.gz#sha256=33379678bdd1e8d2d6e77154094c02a5832dfafd767b1b3f23260d979de3847b (from https://pypi.org/simple/mitos/), version: 2.0.2 2022-09-09T09:52:05,394 Found link https://files.pythonhosted.org/packages/cd/97/a8bf95d5e26b51071d9f342dc475891425b223b6add347a6dbf9412937f1/mitos-2.0.3.tar.gz#sha256=e14414c66dde6d2b46b69feec2b32c9b93f05ec5b72c99e542d1633210620016 (from https://pypi.org/simple/mitos/), version: 2.0.3 2022-09-09T09:52:05,394 Found link https://files.pythonhosted.org/packages/39/9f/6cdac19a8d50915e2e5285b447077459af9c6524f980ded6657dc205593d/mitos-2.0.4.tar.gz#sha256=4b4b3d11a7098b3bcb2298958490faa609f75b435245ef189e193bc509f44905 (from https://pypi.org/simple/mitos/), version: 2.0.4 2022-09-09T09:52:05,395 Found link https://files.pythonhosted.org/packages/d0/16/8040a37887377e3992b0874ab441af54e16030fd23eb844bbf5293597c99/mitos-2.0.5.tar.gz#sha256=834f10c9c3cbf44e54a8392e5ec9921952e7aa4828f8d12db5e2062942df358d (from https://pypi.org/simple/mitos/), version: 2.0.5 2022-09-09T09:52:05,396 Found link https://files.pythonhosted.org/packages/40/ef/5a93579c1ebc63ca8fe71cfe541bca389a0f9410b9a2c1ceff148f83af79/mitos-2.0.6.tar.gz#sha256=3b13799560e7d713ae1e46515ee6052e7422f1f0c1bad8059d2b016385880bcf (from https://pypi.org/simple/mitos/), version: 2.0.6 2022-09-09T09:52:05,396 Found link https://files.pythonhosted.org/packages/1f/a2/32eb96227aae3a719794cc922d839b8c38ee5c315087bf095792c48f996d/mitos-2.0.7.tar.gz#sha256=fd7f4d76a1f7d33ef96d6d86172b894da9dedf186615bf4d490419db43b3c1fc (from https://pypi.org/simple/mitos/), version: 2.0.7 2022-09-09T09:52:05,397 Found link https://files.pythonhosted.org/packages/d5/7f/b3e5c5c83352beb13677186899379de3c50a2222dc8faac16632f600d4b6/mitos-2.0.8.tar.gz#sha256=dd6c8ae202edae80874d99968df974f767d040adbf1947828fa71d5382c18ffe (from https://pypi.org/simple/mitos/), version: 2.0.8 2022-09-09T09:52:05,398 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/9d/93/5f2a1097bfa507acbf7dd6ac677f6df14df61692cccb42d28c34edb7ca5b/mitos-2.1.0-py3-none-any.whl#sha256=47a54e39dab91686c51566c1f27e7d2fbd5dc23ce8d7921b7e50b213fb4e090f (from https://pypi.org/simple/mitos/) 2022-09-09T09:52:05,398 Found link https://files.pythonhosted.org/packages/f8/f4/2950dea175f0bda896b88ac2ac13007a1d007252a583ddd328b176fb54a5/mitos-2.1.0.tar.gz#sha256=01c21e99ecb31b9bfcfa49ae67570395b135bace5293d8ec6a11627063a2e1d8 (from https://pypi.org/simple/mitos/), version: 2.1.0 2022-09-09T09:52:05,399 Fetching project page and analyzing links: https://www.piwheels.org/simple/mitos/ 2022-09-09T09:52:05,400 Getting page https://www.piwheels.org/simple/mitos/ 2022-09-09T09:52:05,402 Found index url https://www.piwheels.org/simple 2022-09-09T09:52:05,653 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.8-py3-none-any.whl#sha256=5e88aa49c5bba746d511e0e619295e3c59916c71ba94246f984e44dcfef6a06c (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:52:05,653 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.7-py3-none-any.whl#sha256=97e98856e946735f44b3df83d67645e0dac8b411edb7774df74c00a44832e1d6 (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:52:05,654 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.6-py3-none-any.whl#sha256=8fba2e7cf9c22c6a728a1f8141764a77a6a4a27d7f7e50106b6e43832857b149 (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:52:05,654 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.5-py3-none-any.whl#sha256=ed4998969ebae7bf1688b78cdac8f19ca359f123ea79c2acd2654dd454a53f22 (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:52:05,655 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.4-py3-none-any.whl#sha256=71ac10ffdc0a236d68e4fd82a700ae35a92f0b23a09242c8b99485ccbadb10cc (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:52:05,656 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.3-py3-none-any.whl#sha256=4da7d3530901e0732adc63ab4afa0c5d9a40558469b2ccee71ea4fbad466603b (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:52:05,656 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.2-py3-none-any.whl#sha256=0cd775b72e2dca4acf2f9c6f4d591abaeb00b983e4882fcf536d934a8263d342 (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:52:05,657 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.1-py3-none-any.whl#sha256=307713427f698c0f3449d782d86287f1494fd2ff773a9fc407fbd29a0de53aed (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:52:05,657 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.5-py3-none-any.whl#sha256=f27a041efc520420cbffbb63a6c428a2ace092d6ffdc47942d6b9c434a281629 (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:52:05,658 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.4-py3-none-any.whl#sha256=4c35b6595c7a62189502f6becaed4b2fe147f7ed6c6ee8d6b69fb4fda5e2139a (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:52:05,658 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.3-py3-none-any.whl#sha256=7b62f2fcef8414d2a429f2f3c033e85c9377805612113e7103fa6793aa083cbc (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:52:05,659 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.2-py3-none-any.whl#sha256=ba6a5f7a1d3a0a95106d401e13f7639c5ed2ecb367ab7899e2204b14aa9930a1 (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:52:05,659 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.1-py3-none-any.whl#sha256=d216729f10eb3463d947658451c8f70fd97a9b2ca94cea55221f7a50f85749e2 (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:52:05,660 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0-py3-none-any.whl#sha256=4f914c63f700f85163b395353782bcb87e49392f63c151f387dd4514694d0ac1 (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:52:05,661 Skipping link: not a file: https://www.piwheels.org/simple/mitos/ 2022-09-09T09:52:05,661 Skipping link: not a file: https://pypi.org/simple/mitos/ 2022-09-09T09:52:05,701 Given no hashes to check 1 links for project 'mitos': discarding no candidates 2022-09-09T09:52:05,732 Collecting mitos==2.1.0 2022-09-09T09:52:05,737 Created temporary directory: /tmp/pip-unpack-v1jdxx6w 2022-09-09T09:52:06,500 Downloading mitos-2.1.0.tar.gz (294 kB) 2022-09-09T09:52:07,135 Added mitos==2.1.0 from https://files.pythonhosted.org/packages/f8/f4/2950dea175f0bda896b88ac2ac13007a1d007252a583ddd328b176fb54a5/mitos-2.1.0.tar.gz#sha256=01c21e99ecb31b9bfcfa49ae67570395b135bace5293d8ec6a11627063a2e1d8 to build tracker '/tmp/pip-build-tracker-s3m_zd7a' 2022-09-09T09:52:07,138 Running setup.py (path:/tmp/pip-wheel-bk092z28/mitos_1b465ac899b84c7ca22c85f8bf366fd2/setup.py) egg_info for package mitos 2022-09-09T09:52:07,139 Created temporary directory: /tmp/pip-pip-egg-info-nuzoojdn 2022-09-09T09:52:07,140 Preparing metadata (setup.py): started 2022-09-09T09:52:07,142 Running command python setup.py egg_info 2022-09-09T09:52:14,596 running egg_info 2022-09-09T09:52:14,600 creating /tmp/pip-pip-egg-info-nuzoojdn/mitos.egg-info 2022-09-09T09:52:15,315 writing /tmp/pip-pip-egg-info-nuzoojdn/mitos.egg-info/PKG-INFO 2022-09-09T09:52:15,913 writing dependency_links to /tmp/pip-pip-egg-info-nuzoojdn/mitos.egg-info/dependency_links.txt 2022-09-09T09:52:18,879 writing requirements to /tmp/pip-pip-egg-info-nuzoojdn/mitos.egg-info/requires.txt 2022-09-09T09:52:19,475 writing top-level names to /tmp/pip-pip-egg-info-nuzoojdn/mitos.egg-info/top_level.txt 2022-09-09T09:52:19,478 writing manifest file '/tmp/pip-pip-egg-info-nuzoojdn/mitos.egg-info/SOURCES.txt' 2022-09-09T09:52:20,625 reading manifest file '/tmp/pip-pip-egg-info-nuzoojdn/mitos.egg-info/SOURCES.txt' 2022-09-09T09:52:20,628 reading manifest template 'MANIFEST.in' 2022-09-09T09:52:20,630 warning: no files found matching 'mitos/codons/gc.prt' 2022-09-09T09:52:20,637 adding license file 'LICENSE' 2022-09-09T09:52:20,647 writing manifest file '/tmp/pip-pip-egg-info-nuzoojdn/mitos.egg-info/SOURCES.txt' 2022-09-09T09:52:20,869 Preparing metadata (setup.py): finished with status 'done' 2022-09-09T09:52:20,879 Source in /tmp/pip-wheel-bk092z28/mitos_1b465ac899b84c7ca22c85f8bf366fd2 has version 2.1.0, which satisfies requirement mitos==2.1.0 from https://files.pythonhosted.org/packages/f8/f4/2950dea175f0bda896b88ac2ac13007a1d007252a583ddd328b176fb54a5/mitos-2.1.0.tar.gz#sha256=01c21e99ecb31b9bfcfa49ae67570395b135bace5293d8ec6a11627063a2e1d8 2022-09-09T09:52:20,881 Removed mitos==2.1.0 from https://files.pythonhosted.org/packages/f8/f4/2950dea175f0bda896b88ac2ac13007a1d007252a583ddd328b176fb54a5/mitos-2.1.0.tar.gz#sha256=01c21e99ecb31b9bfcfa49ae67570395b135bace5293d8ec6a11627063a2e1d8 from build tracker '/tmp/pip-build-tracker-s3m_zd7a' 2022-09-09T09:52:20,890 Created temporary directory: /tmp/pip-unpack-h9i2aux8 2022-09-09T09:52:20,891 Building wheels for collected packages: mitos 2022-09-09T09:52:20,902 Created temporary directory: /tmp/pip-wheel-0tzjoevi 2022-09-09T09:52:20,903 Building wheel for mitos (setup.py): started 2022-09-09T09:52:20,905 Destination directory: /tmp/pip-wheel-0tzjoevi 2022-09-09T09:52:20,905 Running command python setup.py bdist_wheel 2022-09-09T09:52:27,847 running bdist_wheel 2022-09-09T09:52:28,208 running build 2022-09-09T09:52:28,209 running build_py 2022-09-09T09:52:28,925 creating build 2022-09-09T09:52:28,926 creating build/lib 2022-09-09T09:52:28,927 creating build/lib/mitos 2022-09-09T09:52:28,930 copying mitos/trnascan_parse_separate.py -> build/lib/mitos 2022-09-09T09:52:28,935 copying mitos/trna-cm.py -> build/lib/mitos 2022-09-09T09:52:28,948 copying mitos/__init__.py -> build/lib/mitos 2022-09-09T09:52:28,951 copying mitos/mitos-extension.py -> build/lib/mitos 2022-09-09T09:52:28,956 copying mitos/trnadist.py -> build/lib/mitos 2022-09-09T09:52:28,962 copying mitos/mitoscs.py -> build/lib/mitos 2022-09-09T09:52:28,968 copying mitos/update-mitolog.py -> build/lib/mitos 2022-09-09T09:52:28,973 copying mitos/get-wancy.py -> build/lib/mitos 2022-09-09T09:52:28,977 copying mitos/merge_results.py -> build/lib/mitos 2022-09-09T09:52:28,981 copying mitos/names.py -> build/lib/mitos 2022-09-09T09:52:28,985 copying mitos/skew.py -> build/lib/mitos 2022-09-09T09:52:28,989 copying mitos/mitoloc.py -> build/lib/mitos 2022-09-09T09:52:28,994 copying mitos/CONFIG.py -> build/lib/mitos 2022-09-09T09:52:28,998 copying mitos/mitos-extension2.py -> build/lib/mitos 2022-09-09T09:52:29,002 copying mitos/convert_tree.py -> build/lib/mitos 2022-09-09T09:52:29,008 copying mitos/mitoch_revisions.py -> build/lib/mitos 2022-09-09T09:52:29,015 copying mitos/inihit.py -> build/lib/mitos 2022-09-09T09:52:29,019 copying mitos/codoncount.py -> build/lib/mitos 2022-09-09T09:52:29,022 copying mitos/prepareFiles.py -> build/lib/mitos 2022-09-09T09:52:29,026 copying mitos/booreparser.py -> build/lib/mitos 2022-09-09T09:52:29,030 copying mitos/ogre-geneorder.py -> build/lib/mitos 2022-09-09T09:52:29,033 copying mitos/removegene.py -> build/lib/mitos 2022-09-09T09:52:29,036 copying mitos/cmsearch_parse_separate.py -> build/lib/mitos 2022-09-09T09:52:29,040 copying mitos/mumcmp.py -> build/lib/mitos 2022-09-09T09:52:29,043 copying mitos/create_prot_fasta.py -> build/lib/mitos 2022-09-09T09:52:29,048 creating build/lib/mitos/mitfi 2022-09-09T09:52:29,050 copying mitos/mitfi/__init__.py -> build/lib/mitos/mitfi 2022-09-09T09:52:29,056 creating build/lib/mitos/feature 2022-09-09T09:52:29,057 copying mitos/feature/__init__.py -> build/lib/mitos/feature 2022-09-09T09:52:29,066 creating build/lib/mitos/draw 2022-09-09T09:52:29,067 copying mitos/draw/__init__.py -> build/lib/mitos/draw 2022-09-09T09:52:29,072 creating build/lib/mitos/extprog 2022-09-09T09:52:29,073 copying mitos/extprog/__init__.py -> build/lib/mitos/extprog 2022-09-09T09:52:29,079 creating build/lib/mitos/gfffile 2022-09-09T09:52:29,080 copying mitos/gfffile/__init__.py -> build/lib/mitos/gfffile 2022-09-09T09:52:29,084 creating build/lib/mitos/trna 2022-09-09T09:52:29,086 copying mitos/trna/__init__.py -> build/lib/mitos/trna 2022-09-09T09:52:29,090 copying mitos/trna/trnascan.py -> build/lib/mitos/trna 2022-09-09T09:52:29,094 copying mitos/trna/arwenscan.py -> build/lib/mitos/trna 2022-09-09T09:52:29,099 creating build/lib/mitos/blast 2022-09-09T09:52:29,100 copying mitos/blast/__init__.py -> build/lib/mitos/blast 2022-09-09T09:52:29,110 creating build/lib/mitos/bedfile 2022-09-09T09:52:29,111 copying mitos/bedfile/__init__.py -> build/lib/mitos/bedfile 2022-09-09T09:52:29,116 creating build/lib/mitos/tax 2022-09-09T09:52:29,117 copying mitos/tax/__init__.py -> build/lib/mitos/tax 2022-09-09T09:52:29,122 creating build/lib/mitos/tbl 2022-09-09T09:52:29,123 copying mitos/tbl/__init__.py -> build/lib/mitos/tbl 2022-09-09T09:52:29,129 creating build/lib/mitos/sequin 2022-09-09T09:52:29,130 copying mitos/sequin/__init__.py -> build/lib/mitos/sequin 2022-09-09T09:52:29,134 creating build/lib/mitos/protfeat 2022-09-09T09:52:29,136 copying mitos/protfeat/__init__.py -> build/lib/mitos/protfeat 2022-09-09T09:52:29,142 creating build/lib/mitos/mito 2022-09-09T09:52:29,143 copying mitos/mito/__init__.py -> build/lib/mitos/mito 2022-09-09T09:52:29,148 creating build/lib/mitos/mitofile 2022-09-09T09:52:29,150 copying mitos/mitofile/__init__.py -> build/lib/mitos/mitofile 2022-09-09T09:52:29,155 creating build/lib/mitos/gb 2022-09-09T09:52:29,156 copying mitos/gb/__init__.py -> build/lib/mitos/gb 2022-09-09T09:52:29,163 copying mitos/gb/unify.py -> build/lib/mitos/gb 2022-09-09T09:52:29,169 creating build/lib/mitos/sequence 2022-09-09T09:52:29,170 copying mitos/sequence/__init__.py -> build/lib/mitos/sequence 2022-09-09T09:52:29,175 copying mitos/sequence/degenerate.py -> build/lib/mitos/sequence 2022-09-09T09:52:29,179 creating build/lib/mitos/webserver 2022-09-09T09:52:29,181 copying mitos/webserver/__init__.py -> build/lib/mitos/webserver 2022-09-09T09:52:29,186 creating build/lib/mitos/rna 2022-09-09T09:52:29,188 copying mitos/rna/__init__.py -> build/lib/mitos/rna 2022-09-09T09:52:29,191 copying mitos/rna/forester.py -> build/lib/mitos/rna 2022-09-09T09:52:29,194 copying mitos/rna/vienna.py -> build/lib/mitos/rna 2022-09-09T09:52:29,200 creating build/lib/mitos/mergefeature 2022-09-09T09:52:29,201 copying mitos/mergefeature/__init__.py -> build/lib/mitos/mergefeature 2022-09-09T09:52:29,207 creating build/lib/mitos/update 2022-09-09T09:52:29,209 copying mitos/update/__init__.py -> build/lib/mitos/update 2022-09-09T09:52:29,214 running egg_info 2022-09-09T09:52:30,657 writing mitos.egg-info/PKG-INFO 2022-09-09T09:52:31,254 writing dependency_links to mitos.egg-info/dependency_links.txt 2022-09-09T09:52:34,250 writing requirements to mitos.egg-info/requires.txt 2022-09-09T09:52:34,864 writing top-level names to mitos.egg-info/top_level.txt 2022-09-09T09:52:35,015 reading manifest file 'mitos.egg-info/SOURCES.txt' 2022-09-09T09:52:35,028 reading manifest template 'MANIFEST.in' 2022-09-09T09:52:35,030 warning: no files found matching 'mitos/codons/gc.prt' 2022-09-09T09:52:35,035 adding license file 'LICENSE' 2022-09-09T09:52:35,048 writing manifest file 'mitos.egg-info/SOURCES.txt' 2022-09-09T09:52:35,054 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-09-09T09:52:35,055 ############################ 2022-09-09T09:52:35,056 # Package would be ignored # 2022-09-09T09:52:35,056 ############################ 2022-09-09T09:52:35,056 Python recognizes 'mitos.mitfi.parser' as an importable package, however it is 2022-09-09T09:52:35,057 included in the distribution as "data". 2022-09-09T09:52:35,057 This behavior is likely to change in future versions of setuptools (and 2022-09-09T09:52:35,057 therefore is considered deprecated). 2022-09-09T09:52:35,058 Please make sure that 'mitos.mitfi.parser' is included as a package by using 2022-09-09T09:52:35,058 setuptools' `packages` configuration field or the proper discovery methods. 2022-09-09T09:52:35,059 You can read more about "package discovery" and "data files" on setuptools 2022-09-09T09:52:35,059 documentation page. 2022-09-09T09:52:35,060 !! 2022-09-09T09:52:35,061 check.warn(importable) 2022-09-09T09:52:35,072 copying mitos/plotprot.R -> build/lib/mitos 2022-09-09T09:52:35,076 copying mitos/plotrna.R -> build/lib/mitos 2022-09-09T09:52:35,080 copying mitos/plotstst.R -> build/lib/mitos 2022-09-09T09:52:35,087 creating build/lib/mitos/mitfi/parser 2022-09-09T09:52:35,088 copying mitos/mitfi/parser/improve_infernal_structure.jar -> build/lib/mitos/mitfi/parser 2022-09-09T09:52:35,093 copying mitos/mitfi/parser/mitfiGeneticCodes -> build/lib/mitos/mitfi/parser 2022-09-09T09:52:35,098 copying mitos/mitfi/parser/mitfi_import-1.1.jar -> build/lib/mitos/mitfi/parser 2022-09-09T09:52:35,105 copying mitos/mitfi/parser/mitfi_import-1.1.jar.old -> build/lib/mitos/mitfi/parser 2022-09-09T09:52:35,111 copying mitos/mitfi/parser/mitfi_import-1.1.jar.org -> build/lib/mitos/mitfi/parser 2022-09-09T09:52:35,117 copying mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ -> build/lib/mitos/mitfi/parser 2022-09-09T09:52:35,123 copying mitos/mitfi/parser/mitfi_import.jar -> build/lib/mitos/mitfi/parser 2022-09-09T09:52:35,129 copying mitos/webserver/help.txt -> build/lib/mitos/webserver 2022-09-09T09:52:35,135 copying mitos/webserver/history.txt -> build/lib/mitos/webserver 2022-09-09T09:52:35,139 copying mitos/webserver/index.txt -> build/lib/mitos/webserver 2022-09-09T09:52:35,143 copying mitos/webserver/news.txt -> build/lib/mitos/webserver 2022-09-09T09:52:35,147 copying mitos/webserver/upload.txt -> build/lib/mitos/webserver 2022-09-09T09:52:35,151 copying mitos/webserver/wait.txt -> build/lib/mitos/webserver 2022-09-09T09:52:35,174 running build_scripts 2022-09-09T09:52:35,175 creating build/scripts-3.7 2022-09-09T09:52:35,177 copying and adjusting runmitos.py -> build/scripts-3.7 2022-09-09T09:52:35,187 copying and adjusting analyse.py -> build/scripts-3.7 2022-09-09T09:52:35,191 copying and adjusting gcpp.py -> build/scripts-3.7 2022-09-09T09:52:35,196 copying and adjusting geneorder.py -> build/scripts-3.7 2022-09-09T09:52:35,200 copying and adjusting getfeatures.py -> build/scripts-3.7 2022-09-09T09:52:35,204 copying and adjusting getinfo.py -> build/scripts-3.7 2022-09-09T09:52:35,207 copying and adjusting refseqsplit.py -> build/scripts-3.7 2022-09-09T09:52:35,210 copying and adjusting subseq.py -> build/scripts-3.7 2022-09-09T09:52:35,215 copying and adjusting taxtree.py -> build/scripts-3.7 2022-09-09T09:52:35,219 copying update-blastdb.py -> build/scripts-3.7 2022-09-09T09:52:35,223 copying mitos/plotprot.R -> build/scripts-3.7 2022-09-09T09:52:35,227 copying mitos/plotstst.R -> build/scripts-3.7 2022-09-09T09:52:35,232 copying mitos/plotrna.R -> build/scripts-3.7 2022-09-09T09:52:35,234 changing mode of build/scripts-3.7/runmitos.py from 644 to 755 2022-09-09T09:52:35,235 changing mode of build/scripts-3.7/analyse.py from 644 to 755 2022-09-09T09:52:35,235 changing mode of build/scripts-3.7/gcpp.py from 644 to 755 2022-09-09T09:52:35,236 changing mode of build/scripts-3.7/geneorder.py from 644 to 755 2022-09-09T09:52:35,236 changing mode of build/scripts-3.7/getfeatures.py from 644 to 755 2022-09-09T09:52:35,237 changing mode of build/scripts-3.7/getinfo.py from 644 to 755 2022-09-09T09:52:35,237 changing mode of build/scripts-3.7/refseqsplit.py from 644 to 755 2022-09-09T09:52:35,238 changing mode of build/scripts-3.7/subseq.py from 644 to 755 2022-09-09T09:52:35,238 changing mode of build/scripts-3.7/taxtree.py from 644 to 755 2022-09-09T09:52:35,239 changing mode of build/scripts-3.7/update-blastdb.py from 644 to 755 2022-09-09T09:52:35,962 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-09-09T09:52:35,963 setuptools.SetuptoolsDeprecationWarning, 2022-09-09T09:52:36,686 installing to build/bdist.linux-armv7l/wheel 2022-09-09T09:52:36,686 running install 2022-09-09T09:52:36,748 running install_lib 2022-09-09T09:52:37,472 creating build/bdist.linux-armv7l 2022-09-09T09:52:37,473 creating build/bdist.linux-armv7l/wheel 2022-09-09T09:52:37,477 creating build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,479 copying build/lib/mitos/trnascan_parse_separate.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,484 creating build/bdist.linux-armv7l/wheel/mitos/mitfi 2022-09-09T09:52:37,485 copying build/lib/mitos/mitfi/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitfi 2022-09-09T09:52:37,492 creating build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2022-09-09T09:52:37,493 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.old -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2022-09-09T09:52:37,499 copying build/lib/mitos/mitfi/parser/improve_infernal_structure.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2022-09-09T09:52:37,503 copying build/lib/mitos/mitfi/parser/mitfi_import.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2022-09-09T09:52:37,508 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2022-09-09T09:52:37,513 copying build/lib/mitos/mitfi/parser/mitfiGeneticCodes -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2022-09-09T09:52:37,517 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.org -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2022-09-09T09:52:37,522 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2022-09-09T09:52:37,529 creating build/bdist.linux-armv7l/wheel/mitos/feature 2022-09-09T09:52:37,530 copying build/lib/mitos/feature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/feature 2022-09-09T09:52:37,536 copying build/lib/mitos/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,540 copying build/lib/mitos/trna-cm.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,551 copying build/lib/mitos/__init__.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,554 copying build/lib/mitos/mitos-extension.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,559 creating build/bdist.linux-armv7l/wheel/mitos/draw 2022-09-09T09:52:37,561 copying build/lib/mitos/draw/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/draw 2022-09-09T09:52:37,565 creating build/bdist.linux-armv7l/wheel/mitos/extprog 2022-09-09T09:52:37,567 copying build/lib/mitos/extprog/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/extprog 2022-09-09T09:52:37,571 copying build/lib/mitos/trnadist.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,576 creating build/bdist.linux-armv7l/wheel/mitos/gfffile 2022-09-09T09:52:37,578 copying build/lib/mitos/gfffile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gfffile 2022-09-09T09:52:37,581 copying build/lib/mitos/mitoscs.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,587 copying build/lib/mitos/update-mitolog.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,592 creating build/bdist.linux-armv7l/wheel/mitos/trna 2022-09-09T09:52:37,593 copying build/lib/mitos/trna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2022-09-09T09:52:37,597 copying build/lib/mitos/trna/trnascan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2022-09-09T09:52:37,601 copying build/lib/mitos/trna/arwenscan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2022-09-09T09:52:37,606 creating build/bdist.linux-armv7l/wheel/mitos/blast 2022-09-09T09:52:37,607 copying build/lib/mitos/blast/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/blast 2022-09-09T09:52:37,618 creating build/bdist.linux-armv7l/wheel/mitos/bedfile 2022-09-09T09:52:37,619 copying build/lib/mitos/bedfile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/bedfile 2022-09-09T09:52:37,623 copying build/lib/mitos/get-wancy.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,627 creating build/bdist.linux-armv7l/wheel/mitos/tax 2022-09-09T09:52:37,629 copying build/lib/mitos/tax/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tax 2022-09-09T09:52:37,633 creating build/bdist.linux-armv7l/wheel/mitos/tbl 2022-09-09T09:52:37,635 copying build/lib/mitos/tbl/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tbl 2022-09-09T09:52:37,639 copying build/lib/mitos/plotstst.R -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,642 copying build/lib/mitos/merge_results.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,647 creating build/bdist.linux-armv7l/wheel/mitos/sequin 2022-09-09T09:52:37,648 copying build/lib/mitos/sequin/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequin 2022-09-09T09:52:37,652 copying build/lib/mitos/names.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,656 creating build/bdist.linux-armv7l/wheel/mitos/protfeat 2022-09-09T09:52:37,657 copying build/lib/mitos/protfeat/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/protfeat 2022-09-09T09:52:37,663 copying build/lib/mitos/skew.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,667 copying build/lib/mitos/mitoloc.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,671 copying build/lib/mitos/CONFIG.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,675 creating build/bdist.linux-armv7l/wheel/mitos/mito 2022-09-09T09:52:37,677 copying build/lib/mitos/mito/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mito 2022-09-09T09:52:37,681 copying build/lib/mitos/mitos-extension2.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,685 copying build/lib/mitos/convert_tree.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,691 copying build/lib/mitos/mitoch_revisions.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,699 creating build/bdist.linux-armv7l/wheel/mitos/mitofile 2022-09-09T09:52:37,701 copying build/lib/mitos/mitofile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitofile 2022-09-09T09:52:37,705 copying build/lib/mitos/inihit.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,709 copying build/lib/mitos/codoncount.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,712 copying build/lib/mitos/prepareFiles.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,716 creating build/bdist.linux-armv7l/wheel/mitos/gb 2022-09-09T09:52:37,718 copying build/lib/mitos/gb/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2022-09-09T09:52:37,725 copying build/lib/mitos/gb/unify.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2022-09-09T09:52:37,730 creating build/bdist.linux-armv7l/wheel/mitos/sequence 2022-09-09T09:52:37,732 copying build/lib/mitos/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2022-09-09T09:52:37,737 copying build/lib/mitos/sequence/degenerate.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2022-09-09T09:52:37,740 copying build/lib/mitos/booreparser.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,745 creating build/bdist.linux-armv7l/wheel/mitos/webserver 2022-09-09T09:52:37,747 copying build/lib/mitos/webserver/history.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2022-09-09T09:52:37,750 copying build/lib/mitos/webserver/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/webserver 2022-09-09T09:52:37,755 copying build/lib/mitos/webserver/help.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2022-09-09T09:52:37,761 copying build/lib/mitos/webserver/news.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2022-09-09T09:52:37,764 copying build/lib/mitos/webserver/upload.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2022-09-09T09:52:37,767 copying build/lib/mitos/webserver/wait.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2022-09-09T09:52:37,771 copying build/lib/mitos/webserver/index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2022-09-09T09:52:37,774 copying build/lib/mitos/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,778 copying build/lib/mitos/ogre-geneorder.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,782 creating build/bdist.linux-armv7l/wheel/mitos/rna 2022-09-09T09:52:37,784 copying build/lib/mitos/rna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2022-09-09T09:52:37,787 copying build/lib/mitos/rna/forester.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2022-09-09T09:52:37,790 copying build/lib/mitos/rna/vienna.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2022-09-09T09:52:37,797 creating build/bdist.linux-armv7l/wheel/mitos/mergefeature 2022-09-09T09:52:37,798 copying build/lib/mitos/mergefeature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mergefeature 2022-09-09T09:52:37,805 creating build/bdist.linux-armv7l/wheel/mitos/update 2022-09-09T09:52:37,807 copying build/lib/mitos/update/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/update 2022-09-09T09:52:37,813 copying build/lib/mitos/removegene.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,816 copying build/lib/mitos/cmsearch_parse_separate.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,820 copying build/lib/mitos/mumcmp.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,823 copying build/lib/mitos/create_prot_fasta.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T09:52:37,827 running install_egg_info 2022-09-09T09:52:38,554 Copying mitos.egg-info to build/bdist.linux-armv7l/wheel/mitos-2.1.0-py3.7.egg-info 2022-09-09T09:52:38,573 running install_scripts 2022-09-09T09:52:38,682 creating build/bdist.linux-armv7l/wheel/mitos-2.1.0.data 2022-09-09T09:52:38,683 creating build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts 2022-09-09T09:52:38,685 copying build/scripts-3.7/getinfo.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts 2022-09-09T09:52:38,689 copying build/scripts-3.7/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts 2022-09-09T09:52:38,692 copying build/scripts-3.7/taxtree.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts 2022-09-09T09:52:38,696 copying build/scripts-3.7/runmitos.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts 2022-09-09T09:52:38,702 copying build/scripts-3.7/plotstst.R -> build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts 2022-09-09T09:52:38,706 copying build/scripts-3.7/update-blastdb.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts 2022-09-09T09:52:38,710 copying build/scripts-3.7/analyse.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts 2022-09-09T09:52:38,714 copying build/scripts-3.7/subseq.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts 2022-09-09T09:52:38,719 copying build/scripts-3.7/gcpp.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts 2022-09-09T09:52:38,723 copying build/scripts-3.7/refseqsplit.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts 2022-09-09T09:52:38,726 copying build/scripts-3.7/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts 2022-09-09T09:52:38,730 copying build/scripts-3.7/getfeatures.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts 2022-09-09T09:52:38,734 copying build/scripts-3.7/geneorder.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts 2022-09-09T09:52:38,737 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts/getinfo.py to 755 2022-09-09T09:52:38,738 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts/plotrna.R to 755 2022-09-09T09:52:38,739 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts/taxtree.py to 755 2022-09-09T09:52:38,739 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts/runmitos.py to 755 2022-09-09T09:52:38,740 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts/plotstst.R to 755 2022-09-09T09:52:38,740 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts/update-blastdb.py to 755 2022-09-09T09:52:38,741 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts/analyse.py to 755 2022-09-09T09:52:38,741 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts/subseq.py to 755 2022-09-09T09:52:38,742 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts/gcpp.py to 755 2022-09-09T09:52:38,742 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts/refseqsplit.py to 755 2022-09-09T09:52:38,743 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts/plotprot.R to 755 2022-09-09T09:52:38,743 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts/getfeatures.py to 755 2022-09-09T09:52:38,744 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.0.data/scripts/geneorder.py to 755 2022-09-09T09:52:38,777 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-09-09T09:52:38,785 creating build/bdist.linux-armv7l/wheel/mitos-2.1.0.dist-info/WHEEL 2022-09-09T09:52:38,790 creating '/tmp/pip-wheel-0tzjoevi/mitos-2.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-09-09T09:52:38,796 adding 'mitos/CONFIG.py' 2022-09-09T09:52:38,798 adding 'mitos/__init__.py' 2022-09-09T09:52:38,802 adding 'mitos/booreparser.py' 2022-09-09T09:52:38,804 adding 'mitos/cmsearch_parse_separate.py' 2022-09-09T09:52:38,807 adding 'mitos/codoncount.py' 2022-09-09T09:52:38,815 adding 'mitos/convert_tree.py' 2022-09-09T09:52:38,820 adding 'mitos/create_prot_fasta.py' 2022-09-09T09:52:38,823 adding 'mitos/get-wancy.py' 2022-09-09T09:52:38,826 adding 'mitos/inihit.py' 2022-09-09T09:52:38,830 adding 'mitos/merge_results.py' 2022-09-09T09:52:38,842 adding 'mitos/mitoch_revisions.py' 2022-09-09T09:52:38,846 adding 'mitos/mitoloc.py' 2022-09-09T09:52:38,851 adding 'mitos/mitos-extension.py' 2022-09-09T09:52:38,855 adding 'mitos/mitos-extension2.py' 2022-09-09T09:52:38,868 adding 'mitos/mitoscs.py' 2022-09-09T09:52:38,871 adding 'mitos/mumcmp.py' 2022-09-09T09:52:38,873 adding 'mitos/names.py' 2022-09-09T09:52:38,875 adding 'mitos/ogre-geneorder.py' 2022-09-09T09:52:38,878 adding 'mitos/plotprot.R' 2022-09-09T09:52:38,881 adding 'mitos/plotrna.R' 2022-09-09T09:52:38,883 adding 'mitos/plotstst.R' 2022-09-09T09:52:38,886 adding 'mitos/prepareFiles.py' 2022-09-09T09:52:38,888 adding 'mitos/removegene.py' 2022-09-09T09:52:38,893 adding 'mitos/skew.py' 2022-09-09T09:52:38,932 adding 'mitos/trna-cm.py' 2022-09-09T09:52:38,942 adding 'mitos/trnadist.py' 2022-09-09T09:52:38,946 adding 'mitos/trnascan_parse_separate.py' 2022-09-09T09:52:38,949 adding 'mitos/update-mitolog.py' 2022-09-09T09:52:38,953 adding 'mitos/bedfile/__init__.py' 2022-09-09T09:52:38,979 adding 'mitos/blast/__init__.py' 2022-09-09T09:52:38,985 adding 'mitos/draw/__init__.py' 2022-09-09T09:52:38,989 adding 'mitos/extprog/__init__.py' 2022-09-09T09:52:39,003 adding 'mitos/feature/__init__.py' 2022-09-09T09:52:39,018 adding 'mitos/gb/__init__.py' 2022-09-09T09:52:39,022 adding 'mitos/gb/unify.py' 2022-09-09T09:52:39,026 adding 'mitos/gfffile/__init__.py' 2022-09-09T09:52:39,034 adding 'mitos/mergefeature/__init__.py' 2022-09-09T09:52:39,042 adding 'mitos/mitfi/__init__.py' 2022-09-09T09:52:39,046 adding 'mitos/mitfi/parser/improve_infernal_structure.jar' 2022-09-09T09:52:39,049 adding 'mitos/mitfi/parser/mitfiGeneticCodes' 2022-09-09T09:52:39,058 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar' 2022-09-09T09:52:39,068 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar.old' 2022-09-09T09:52:39,077 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar.org' 2022-09-09T09:52:39,086 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ' 2022-09-09T09:52:39,096 adding 'mitos/mitfi/parser/mitfi_import.jar' 2022-09-09T09:52:39,101 adding 'mitos/mito/__init__.py' 2022-09-09T09:52:39,104 adding 'mitos/mitofile/__init__.py' 2022-09-09T09:52:39,113 adding 'mitos/protfeat/__init__.py' 2022-09-09T09:52:39,117 adding 'mitos/rna/__init__.py' 2022-09-09T09:52:39,120 adding 'mitos/rna/forester.py' 2022-09-09T09:52:39,125 adding 'mitos/rna/vienna.py' 2022-09-09T09:52:39,132 adding 'mitos/sequence/__init__.py' 2022-09-09T09:52:39,135 adding 'mitos/sequence/degenerate.py' 2022-09-09T09:52:39,139 adding 'mitos/sequin/__init__.py' 2022-09-09T09:52:39,142 adding 'mitos/tax/__init__.py' 2022-09-09T09:52:39,146 adding 'mitos/tbl/__init__.py' 2022-09-09T09:52:39,150 adding 'mitos/trna/__init__.py' 2022-09-09T09:52:39,154 adding 'mitos/trna/arwenscan.py' 2022-09-09T09:52:39,159 adding 'mitos/trna/trnascan.py' 2022-09-09T09:52:39,167 adding 'mitos/update/__init__.py' 2022-09-09T09:52:39,172 adding 'mitos/webserver/__init__.py' 2022-09-09T09:52:39,181 adding 'mitos/webserver/help.txt' 2022-09-09T09:52:39,184 adding 'mitos/webserver/history.txt' 2022-09-09T09:52:39,187 adding 'mitos/webserver/index.txt' 2022-09-09T09:52:39,190 adding 'mitos/webserver/news.txt' 2022-09-09T09:52:39,192 adding 'mitos/webserver/upload.txt' 2022-09-09T09:52:39,194 adding 'mitos/webserver/wait.txt' 2022-09-09T09:52:39,201 adding 'mitos-2.1.0.data/scripts/analyse.py' 2022-09-09T09:52:39,204 adding 'mitos-2.1.0.data/scripts/gcpp.py' 2022-09-09T09:52:39,209 adding 'mitos-2.1.0.data/scripts/geneorder.py' 2022-09-09T09:52:39,213 adding 'mitos-2.1.0.data/scripts/getfeatures.py' 2022-09-09T09:52:39,215 adding 'mitos-2.1.0.data/scripts/getinfo.py' 2022-09-09T09:52:39,218 adding 'mitos-2.1.0.data/scripts/plotprot.R' 2022-09-09T09:52:39,221 adding 'mitos-2.1.0.data/scripts/plotrna.R' 2022-09-09T09:52:39,224 adding 'mitos-2.1.0.data/scripts/plotstst.R' 2022-09-09T09:52:39,226 adding 'mitos-2.1.0.data/scripts/refseqsplit.py' 2022-09-09T09:52:39,239 adding 'mitos-2.1.0.data/scripts/runmitos.py' 2022-09-09T09:52:39,243 adding 'mitos-2.1.0.data/scripts/subseq.py' 2022-09-09T09:52:39,246 adding 'mitos-2.1.0.data/scripts/taxtree.py' 2022-09-09T09:52:39,248 adding 'mitos-2.1.0.data/scripts/update-blastdb.py' 2022-09-09T09:52:39,253 adding 'mitos-2.1.0.dist-info/LICENSE' 2022-09-09T09:52:39,254 adding 'mitos-2.1.0.dist-info/METADATA' 2022-09-09T09:52:39,256 adding 'mitos-2.1.0.dist-info/WHEEL' 2022-09-09T09:52:39,258 adding 'mitos-2.1.0.dist-info/top_level.txt' 2022-09-09T09:52:39,260 adding 'mitos-2.1.0.dist-info/RECORD' 2022-09-09T09:52:39,278 removing build/bdist.linux-armv7l/wheel 2022-09-09T09:52:39,584 Building wheel for mitos (setup.py): finished with status 'done' 2022-09-09T09:52:39,602 Created wheel for mitos: filename=mitos-2.1.0-py3-none-any.whl size=349189 sha256=d4b006045b98620155cbed38de6ecf0d0ffb030cebc4d6e6e947cb015b8ce746 2022-09-09T09:52:39,604 Stored in directory: /tmp/pip-ephem-wheel-cache-qnmyq2e6/wheels/91/40/6a/a78d1ac0684751cf07433af1c9d5b216b21863048a7f02c8de 2022-09-09T09:52:39,632 Successfully built mitos 2022-09-09T09:52:39,665 Removed build tracker: '/tmp/pip-build-tracker-s3m_zd7a'