2022-09-09T09:59:23,661 Created temporary directory: /tmp/pip-ephem-wheel-cache-lgqi7bdf 2022-09-09T09:59:23,666 Created temporary directory: /tmp/pip-build-tracker-dzses7iq 2022-09-09T09:59:23,667 Initialized build tracking at /tmp/pip-build-tracker-dzses7iq 2022-09-09T09:59:23,668 Created build tracker: /tmp/pip-build-tracker-dzses7iq 2022-09-09T09:59:23,668 Entered build tracker: /tmp/pip-build-tracker-dzses7iq 2022-09-09T09:59:23,669 Created temporary directory: /tmp/pip-wheel-jmci72yz 2022-09-09T09:59:23,740 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-09-09T09:59:23,748 2 location(s) to search for versions of mitos: 2022-09-09T09:59:23,748 * https://pypi.org/simple/mitos/ 2022-09-09T09:59:23,748 * https://www.piwheels.org/simple/mitos/ 2022-09-09T09:59:23,749 Fetching project page and analyzing links: https://pypi.org/simple/mitos/ 2022-09-09T09:59:23,750 Getting page https://pypi.org/simple/mitos/ 2022-09-09T09:59:23,754 Found index url https://pypi.org/simple 2022-09-09T09:59:23,885 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/ae/2d/5f1e66a046e59cf6088f44d4a02cae66d498e226365af5fd42e2d660a814/mitos-1.0-py2-none-any.whl#sha256=8231d691ae63545671137f78273b95ecb414c2d741f76d9246bd46c3db4fe1ce (from https://pypi.org/simple/mitos/) 2022-09-09T09:59:23,886 Found link https://files.pythonhosted.org/packages/c5/6e/e1aae4079b0ebbce64897f54f5cd4a3953a0cb741026d16e14e7ae272a48/mitos-1.0.tar.gz#sha256=222d58b100e37887a073129ed79850526188511853b780dd3d11fc9a03c5f61c (from https://pypi.org/simple/mitos/), version: 1.0 2022-09-09T09:59:23,886 Found link https://files.pythonhosted.org/packages/d7/19/816780e09ecc6a783f146d80bcde73eb7940d074f4feea137ec954bfd437/mitos-1.0.1.tar.gz#sha256=de00eecb47f5a67c4a27104c87b4d6e26f1c9eddc86369864f7aed1b486c21c6 (from https://pypi.org/simple/mitos/), version: 1.0.1 2022-09-09T09:59:23,887 Found link https://files.pythonhosted.org/packages/38/c7/3dd90bcf0d61c69226ef1632baa3ad0e96d798de36053b4b56ed7660dfdb/mitos-1.0.2.tar.gz#sha256=321dba26e0bb1eefe71ccfac1da1a2ac65c2aa0a797c02375e8d40b9463928c5 (from https://pypi.org/simple/mitos/), version: 1.0.2 2022-09-09T09:59:23,888 Found link https://files.pythonhosted.org/packages/e2/d4/864af2605cc1f45cc78cfed740bbdfba1da59ea9a42c24ef5077c9218501/mitos-1.0.3.tar.gz#sha256=bce4c949809f1f6b05800ae1e750dc4348c01310e2a89716e7811bba9b5807f2 (from https://pypi.org/simple/mitos/), version: 1.0.3 2022-09-09T09:59:23,889 Found link https://files.pythonhosted.org/packages/8d/32/1aa5eb88f964c3cf5441622648cc4ae30f115db32bdd5dc5bf194a3c112c/mitos-1.0.4.tar.gz#sha256=891b17e6b58808b9485bcf40ae0f349f9a3ec196e2a953d9494c286cd50322b3 (from https://pypi.org/simple/mitos/), version: 1.0.4 2022-09-09T09:59:23,889 Found link https://files.pythonhosted.org/packages/ff/49/f4c711126604aa86abeeda44378786a0903bc53970acf4afa5feb68f72b8/mitos-1.0.5.tar.gz#sha256=b626b066e8b50232e750a96157016ab792f63a7a44d8d5d5fe3f79a2c8279038 (from https://pypi.org/simple/mitos/), version: 1.0.5 2022-09-09T09:59:23,890 Found link https://files.pythonhosted.org/packages/ce/33/46fd40fd9f4c11f5bf296c2c092f59e36dee233d71a0f032b34c2a64c7ba/mitos-1.1.0.tar.gz#sha256=b1abb1936610d85f5f9119e032370ca0cff59e077a2cd732cba2859ea94157e5 (from https://pypi.org/simple/mitos/), version: 1.1.0 2022-09-09T09:59:23,891 Found link https://files.pythonhosted.org/packages/f3/fa/7e2b9cef0d99e7792077a4c1116dc9bbe4c085e7b89ea79b74474c00b2b1/mitos-2.0.1.tar.gz#sha256=cc622e1f408b04f840f9c11db1f5639c7ce5798869728bd65fcda1fd4d228099 (from https://pypi.org/simple/mitos/), version: 2.0.1 2022-09-09T09:59:23,892 Found link https://files.pythonhosted.org/packages/d7/53/5d215fe8689055dd329a27202f9dc7f66e23548f3d2ad3fa55d98dc56988/mitos-2.0.2.tar.gz#sha256=33379678bdd1e8d2d6e77154094c02a5832dfafd767b1b3f23260d979de3847b (from https://pypi.org/simple/mitos/), version: 2.0.2 2022-09-09T09:59:23,892 Found link https://files.pythonhosted.org/packages/cd/97/a8bf95d5e26b51071d9f342dc475891425b223b6add347a6dbf9412937f1/mitos-2.0.3.tar.gz#sha256=e14414c66dde6d2b46b69feec2b32c9b93f05ec5b72c99e542d1633210620016 (from https://pypi.org/simple/mitos/), version: 2.0.3 2022-09-09T09:59:23,893 Found link https://files.pythonhosted.org/packages/39/9f/6cdac19a8d50915e2e5285b447077459af9c6524f980ded6657dc205593d/mitos-2.0.4.tar.gz#sha256=4b4b3d11a7098b3bcb2298958490faa609f75b435245ef189e193bc509f44905 (from https://pypi.org/simple/mitos/), version: 2.0.4 2022-09-09T09:59:23,894 Found link https://files.pythonhosted.org/packages/d0/16/8040a37887377e3992b0874ab441af54e16030fd23eb844bbf5293597c99/mitos-2.0.5.tar.gz#sha256=834f10c9c3cbf44e54a8392e5ec9921952e7aa4828f8d12db5e2062942df358d (from https://pypi.org/simple/mitos/), version: 2.0.5 2022-09-09T09:59:23,894 Found link https://files.pythonhosted.org/packages/40/ef/5a93579c1ebc63ca8fe71cfe541bca389a0f9410b9a2c1ceff148f83af79/mitos-2.0.6.tar.gz#sha256=3b13799560e7d713ae1e46515ee6052e7422f1f0c1bad8059d2b016385880bcf (from https://pypi.org/simple/mitos/), version: 2.0.6 2022-09-09T09:59:23,895 Found link https://files.pythonhosted.org/packages/1f/a2/32eb96227aae3a719794cc922d839b8c38ee5c315087bf095792c48f996d/mitos-2.0.7.tar.gz#sha256=fd7f4d76a1f7d33ef96d6d86172b894da9dedf186615bf4d490419db43b3c1fc (from https://pypi.org/simple/mitos/), version: 2.0.7 2022-09-09T09:59:23,896 Found link https://files.pythonhosted.org/packages/d5/7f/b3e5c5c83352beb13677186899379de3c50a2222dc8faac16632f600d4b6/mitos-2.0.8.tar.gz#sha256=dd6c8ae202edae80874d99968df974f767d040adbf1947828fa71d5382c18ffe (from https://pypi.org/simple/mitos/), version: 2.0.8 2022-09-09T09:59:23,897 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/9d/93/5f2a1097bfa507acbf7dd6ac677f6df14df61692cccb42d28c34edb7ca5b/mitos-2.1.0-py3-none-any.whl#sha256=47a54e39dab91686c51566c1f27e7d2fbd5dc23ce8d7921b7e50b213fb4e090f (from https://pypi.org/simple/mitos/) 2022-09-09T09:59:23,897 Found link https://files.pythonhosted.org/packages/f8/f4/2950dea175f0bda896b88ac2ac13007a1d007252a583ddd328b176fb54a5/mitos-2.1.0.tar.gz#sha256=01c21e99ecb31b9bfcfa49ae67570395b135bace5293d8ec6a11627063a2e1d8 (from https://pypi.org/simple/mitos/), version: 2.1.0 2022-09-09T09:59:23,898 Fetching project page and analyzing links: https://www.piwheels.org/simple/mitos/ 2022-09-09T09:59:23,899 Getting page https://www.piwheels.org/simple/mitos/ 2022-09-09T09:59:23,901 Found index url https://www.piwheels.org/simple 2022-09-09T09:59:24,124 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.0-py3-none-any.whl#sha256=d4b006045b98620155cbed38de6ecf0d0ffb030cebc4d6e6e947cb015b8ce746 (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:59:24,125 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.8-py3-none-any.whl#sha256=5e88aa49c5bba746d511e0e619295e3c59916c71ba94246f984e44dcfef6a06c (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:59:24,126 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.7-py3-none-any.whl#sha256=97e98856e946735f44b3df83d67645e0dac8b411edb7774df74c00a44832e1d6 (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:59:24,126 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.6-py3-none-any.whl#sha256=8fba2e7cf9c22c6a728a1f8141764a77a6a4a27d7f7e50106b6e43832857b149 (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:59:24,127 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.5-py3-none-any.whl#sha256=ed4998969ebae7bf1688b78cdac8f19ca359f123ea79c2acd2654dd454a53f22 (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:59:24,127 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.4-py3-none-any.whl#sha256=71ac10ffdc0a236d68e4fd82a700ae35a92f0b23a09242c8b99485ccbadb10cc (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:59:24,128 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.3-py3-none-any.whl#sha256=4da7d3530901e0732adc63ab4afa0c5d9a40558469b2ccee71ea4fbad466603b (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:59:24,128 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.2-py3-none-any.whl#sha256=0cd775b72e2dca4acf2f9c6f4d591abaeb00b983e4882fcf536d934a8263d342 (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:59:24,129 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.1-py3-none-any.whl#sha256=307713427f698c0f3449d782d86287f1494fd2ff773a9fc407fbd29a0de53aed (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:59:24,129 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.5-py3-none-any.whl#sha256=f27a041efc520420cbffbb63a6c428a2ace092d6ffdc47942d6b9c434a281629 (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:59:24,130 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.4-py3-none-any.whl#sha256=4c35b6595c7a62189502f6becaed4b2fe147f7ed6c6ee8d6b69fb4fda5e2139a (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:59:24,130 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.3-py3-none-any.whl#sha256=7b62f2fcef8414d2a429f2f3c033e85c9377805612113e7103fa6793aa083cbc (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:59:24,131 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.2-py3-none-any.whl#sha256=ba6a5f7a1d3a0a95106d401e13f7639c5ed2ecb367ab7899e2204b14aa9930a1 (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:59:24,131 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.1-py3-none-any.whl#sha256=d216729f10eb3463d947658451c8f70fd97a9b2ca94cea55221f7a50f85749e2 (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:59:24,132 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0-py3-none-any.whl#sha256=4f914c63f700f85163b395353782bcb87e49392f63c151f387dd4514694d0ac1 (from https://www.piwheels.org/simple/mitos/) 2022-09-09T09:59:24,133 Skipping link: not a file: https://www.piwheels.org/simple/mitos/ 2022-09-09T09:59:24,133 Skipping link: not a file: https://pypi.org/simple/mitos/ 2022-09-09T09:59:24,173 Given no hashes to check 1 links for project 'mitos': discarding no candidates 2022-09-09T09:59:24,204 Collecting mitos==1.1.0 2022-09-09T09:59:24,208 Created temporary directory: /tmp/pip-unpack-4p_oxpc4 2022-09-09T09:59:25,682 Downloading mitos-1.1.0.tar.gz (12.4 MB) 2022-09-09T09:59:33,431 Added mitos==1.1.0 from https://files.pythonhosted.org/packages/ce/33/46fd40fd9f4c11f5bf296c2c092f59e36dee233d71a0f032b34c2a64c7ba/mitos-1.1.0.tar.gz#sha256=b1abb1936610d85f5f9119e032370ca0cff59e077a2cd732cba2859ea94157e5 to build tracker '/tmp/pip-build-tracker-dzses7iq' 2022-09-09T09:59:33,434 Running setup.py (path:/tmp/pip-wheel-jmci72yz/mitos_faa01373bdcd48778c960f0787b7a1fa/setup.py) egg_info for package mitos 2022-09-09T09:59:33,436 Created temporary directory: /tmp/pip-pip-egg-info-zvkeqa4e 2022-09-09T09:59:33,436 Preparing metadata (setup.py): started 2022-09-09T09:59:33,439 Running command python setup.py egg_info 2022-09-09T09:59:41,139 running egg_info 2022-09-09T09:59:41,144 creating /tmp/pip-pip-egg-info-zvkeqa4e/mitos.egg-info 2022-09-09T09:59:41,887 writing /tmp/pip-pip-egg-info-zvkeqa4e/mitos.egg-info/PKG-INFO 2022-09-09T09:59:42,489 writing dependency_links to /tmp/pip-pip-egg-info-zvkeqa4e/mitos.egg-info/dependency_links.txt 2022-09-09T09:59:45,483 writing requirements to /tmp/pip-pip-egg-info-zvkeqa4e/mitos.egg-info/requires.txt 2022-09-09T09:59:46,081 writing top-level names to /tmp/pip-pip-egg-info-zvkeqa4e/mitos.egg-info/top_level.txt 2022-09-09T09:59:46,084 writing manifest file '/tmp/pip-pip-egg-info-zvkeqa4e/mitos.egg-info/SOURCES.txt' 2022-09-09T09:59:47,309 reading manifest file '/tmp/pip-pip-egg-info-zvkeqa4e/mitos.egg-info/SOURCES.txt' 2022-09-09T09:59:47,312 reading manifest template 'MANIFEST.in' 2022-09-09T09:59:47,321 adding license file 'LICENSE' 2022-09-09T09:59:47,330 writing manifest file '/tmp/pip-pip-egg-info-zvkeqa4e/mitos.egg-info/SOURCES.txt' 2022-09-09T09:59:47,550 Preparing metadata (setup.py): finished with status 'done' 2022-09-09T09:59:47,560 Source in /tmp/pip-wheel-jmci72yz/mitos_faa01373bdcd48778c960f0787b7a1fa has version 1.1.0, which satisfies requirement mitos==1.1.0 from https://files.pythonhosted.org/packages/ce/33/46fd40fd9f4c11f5bf296c2c092f59e36dee233d71a0f032b34c2a64c7ba/mitos-1.1.0.tar.gz#sha256=b1abb1936610d85f5f9119e032370ca0cff59e077a2cd732cba2859ea94157e5 2022-09-09T09:59:47,562 Removed mitos==1.1.0 from https://files.pythonhosted.org/packages/ce/33/46fd40fd9f4c11f5bf296c2c092f59e36dee233d71a0f032b34c2a64c7ba/mitos-1.1.0.tar.gz#sha256=b1abb1936610d85f5f9119e032370ca0cff59e077a2cd732cba2859ea94157e5 from build tracker '/tmp/pip-build-tracker-dzses7iq' 2022-09-09T09:59:47,571 Created temporary directory: /tmp/pip-unpack-zy_di1nj 2022-09-09T09:59:47,573 Building wheels for collected packages: mitos 2022-09-09T09:59:47,582 Created temporary directory: /tmp/pip-wheel-erl7wsw6 2022-09-09T09:59:47,583 Building wheel for mitos (setup.py): started 2022-09-09T09:59:47,585 Destination directory: /tmp/pip-wheel-erl7wsw6 2022-09-09T09:59:47,585 Running command python setup.py bdist_wheel 2022-09-09T09:59:54,760 running bdist_wheel 2022-09-09T09:59:55,187 running build 2022-09-09T09:59:55,188 running build_py 2022-09-09T09:59:55,927 creating build 2022-09-09T09:59:55,927 creating build/lib 2022-09-09T09:59:55,929 creating build/lib/mitos 2022-09-09T09:59:55,931 copying mitos/update-blastdb.py -> build/lib/mitos 2022-09-09T09:59:55,935 copying mitos/trnadist.py -> build/lib/mitos 2022-09-09T09:59:55,939 copying mitos/mitos-extension2.py -> build/lib/mitos 2022-09-09T09:59:55,944 copying mitos/mitos-extension.py -> build/lib/mitos 2022-09-09T09:59:55,948 copying mitos/skew.py -> build/lib/mitos 2022-09-09T09:59:55,953 copying mitos/__init__.py -> build/lib/mitos 2022-09-09T09:59:55,956 copying mitos/booreparser.py -> build/lib/mitos 2022-09-09T09:59:55,960 copying mitos/create_prot_fasta.py -> build/lib/mitos 2022-09-09T09:59:55,964 copying mitos/convert_tree.py -> build/lib/mitos 2022-09-09T09:59:55,969 copying mitos/prepareFiles.py -> build/lib/mitos 2022-09-09T09:59:55,972 copying mitos/removegene.py -> build/lib/mitos 2022-09-09T09:59:55,976 copying mitos/inihit.py -> build/lib/mitos 2022-09-09T09:59:55,980 copying mitos/CONFIG.py -> build/lib/mitos 2022-09-09T09:59:55,983 copying mitos/mitoloc.py -> build/lib/mitos 2022-09-09T09:59:55,987 copying mitos/ogre-geneorder.py -> build/lib/mitos 2022-09-09T09:59:55,990 copying mitos/mitoch_revisions.py -> build/lib/mitos 2022-09-09T09:59:55,996 copying mitos/trna-cm.py -> build/lib/mitos 2022-09-09T09:59:56,010 copying mitos/update-mitolog.py -> build/lib/mitos 2022-09-09T09:59:56,014 creating build/lib/mitos/tax 2022-09-09T09:59:56,016 copying mitos/tax/__init__.py -> build/lib/mitos/tax 2022-09-09T09:59:56,021 creating build/lib/mitos/trna 2022-09-09T09:59:56,023 copying mitos/trna/__init__.py -> build/lib/mitos/trna 2022-09-09T09:59:56,026 copying mitos/trna/arwenscan.py -> build/lib/mitos/trna 2022-09-09T09:59:56,031 copying mitos/trna/trnascan.py -> build/lib/mitos/trna 2022-09-09T09:59:56,037 creating build/lib/mitos/webserver 2022-09-09T09:59:56,039 copying mitos/webserver/__init__.py -> build/lib/mitos/webserver 2022-09-09T09:59:56,045 creating build/lib/mitos/update 2022-09-09T09:59:56,046 copying mitos/update/__init__.py -> build/lib/mitos/update 2022-09-09T09:59:56,052 creating build/lib/mitos/rna 2022-09-09T09:59:56,054 copying mitos/rna/forester.py -> build/lib/mitos/rna 2022-09-09T09:59:56,058 copying mitos/rna/__init__.py -> build/lib/mitos/rna 2022-09-09T09:59:56,060 copying mitos/rna/vienna.py -> build/lib/mitos/rna 2022-09-09T09:59:56,066 creating build/lib/mitos/tbl 2022-09-09T09:59:56,067 copying mitos/tbl/__init__.py -> build/lib/mitos/tbl 2022-09-09T09:59:56,072 creating build/lib/mitos/gfffile 2022-09-09T09:59:56,074 copying mitos/gfffile/__init__.py -> build/lib/mitos/gfffile 2022-09-09T09:59:56,078 creating build/lib/mitos/mitfi 2022-09-09T09:59:56,080 copying mitos/mitfi/__init__.py -> build/lib/mitos/mitfi 2022-09-09T09:59:56,085 creating build/lib/mitos/feature 2022-09-09T09:59:56,087 copying mitos/feature/__init__.py -> build/lib/mitos/feature 2022-09-09T09:59:56,093 creating build/lib/mitos/mergefeature 2022-09-09T09:59:56,094 copying mitos/mergefeature/__init__.py -> build/lib/mitos/mergefeature 2022-09-09T09:59:56,100 creating build/lib/mitos/bedfile 2022-09-09T09:59:56,102 copying mitos/bedfile/__init__.py -> build/lib/mitos/bedfile 2022-09-09T09:59:56,107 creating build/lib/mitos/gb 2022-09-09T09:59:56,108 copying mitos/gb/__init__.py -> build/lib/mitos/gb 2022-09-09T09:59:56,114 copying mitos/gb/unify.py -> build/lib/mitos/gb 2022-09-09T09:59:56,119 creating build/lib/mitos/mito 2022-09-09T09:59:56,121 copying mitos/mito/__init__.py -> build/lib/mitos/mito 2022-09-09T09:59:56,125 creating build/lib/mitos/mitofile 2022-09-09T09:59:56,127 copying mitos/mitofile/__init__.py -> build/lib/mitos/mitofile 2022-09-09T09:59:56,131 creating build/lib/mitos/blast 2022-09-09T09:59:56,133 copying mitos/blast/__init__.py -> build/lib/mitos/blast 2022-09-09T09:59:56,140 creating build/lib/mitos/sequence 2022-09-09T09:59:56,141 copying mitos/sequence/__init__.py -> build/lib/mitos/sequence 2022-09-09T09:59:56,147 copying mitos/sequence/degenerate.py -> build/lib/mitos/sequence 2022-09-09T09:59:56,151 creating build/lib/mitos/codon 2022-09-09T09:59:56,152 copying mitos/codon/__init__.py -> build/lib/mitos/codon 2022-09-09T09:59:56,157 creating build/lib/mitos/draw 2022-09-09T09:59:56,158 copying mitos/draw/__init__.py -> build/lib/mitos/draw 2022-09-09T09:59:56,163 creating build/lib/mitos/extprog 2022-09-09T09:59:56,165 copying mitos/extprog/__init__.py -> build/lib/mitos/extprog 2022-09-09T09:59:56,169 running egg_info 2022-09-09T09:59:57,667 writing mitos.egg-info/PKG-INFO 2022-09-09T09:59:58,259 writing dependency_links to mitos.egg-info/dependency_links.txt 2022-09-09T10:00:01,222 writing requirements to mitos.egg-info/requires.txt 2022-09-09T10:00:01,816 writing top-level names to mitos.egg-info/top_level.txt 2022-09-09T10:00:01,985 reading manifest file 'mitos.egg-info/SOURCES.txt' 2022-09-09T10:00:02,084 reading manifest template 'MANIFEST.in' 2022-09-09T10:00:02,089 adding license file 'LICENSE' 2022-09-09T10:00:02,123 writing manifest file 'mitos.egg-info/SOURCES.txt' 2022-09-09T10:00:02,139 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-09-09T10:00:02,140 ############################ 2022-09-09T10:00:02,141 # Package would be ignored # 2022-09-09T10:00:02,141 ############################ 2022-09-09T10:00:02,141 Python recognizes 'mitos.codons' as an importable package, however it is 2022-09-09T10:00:02,142 included in the distribution as "data". 2022-09-09T10:00:02,142 This behavior is likely to change in future versions of setuptools (and 2022-09-09T10:00:02,142 therefore is considered deprecated). 2022-09-09T10:00:02,143 Please make sure that 'mitos.codons' is included as a package by using 2022-09-09T10:00:02,143 setuptools' `packages` configuration field or the proper discovery methods. 2022-09-09T10:00:02,144 You can read more about "package discovery" and "data files" on setuptools 2022-09-09T10:00:02,144 documentation page. 2022-09-09T10:00:02,145 !! 2022-09-09T10:00:02,145 check.warn(importable) 2022-09-09T10:00:02,146 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-09-09T10:00:02,146 ############################ 2022-09-09T10:00:02,147 # Package would be ignored # 2022-09-09T10:00:02,147 ############################ 2022-09-09T10:00:02,147 Python recognizes 'mitos.mitfi.parser' as an importable package, however it is 2022-09-09T10:00:02,148 included in the distribution as "data". 2022-09-09T10:00:02,148 This behavior is likely to change in future versions of setuptools (and 2022-09-09T10:00:02,148 therefore is considered deprecated). 2022-09-09T10:00:02,149 Please make sure that 'mitos.mitfi.parser' is included as a package by using 2022-09-09T10:00:02,149 setuptools' `packages` configuration field or the proper discovery methods. 2022-09-09T10:00:02,150 You can read more about "package discovery" and "data files" on setuptools 2022-09-09T10:00:02,150 documentation page. 2022-09-09T10:00:02,151 !! 2022-09-09T10:00:02,152 check.warn(importable) 2022-09-09T10:00:02,164 copying mitos/CONFIG.py.sample -> build/lib/mitos 2022-09-09T10:00:02,171 copying mitos/plotprot.R -> build/lib/mitos 2022-09-09T10:00:02,175 copying mitos/plotrna.R -> build/lib/mitos 2022-09-09T10:00:02,182 creating build/lib/mitos/codons 2022-09-09T10:00:02,183 copying mitos/codons/gc.prt -> build/lib/mitos/codons 2022-09-09T10:00:02,188 copying mitos/webserver/DB_index.txt -> build/lib/mitos/webserver 2022-09-09T10:00:02,192 copying mitos/webserver/DB_search.txt -> build/lib/mitos/webserver 2022-09-09T10:00:02,195 copying mitos/webserver/help.txt -> build/lib/mitos/webserver 2022-09-09T10:00:02,209 copying mitos/webserver/history.txt -> build/lib/mitos/webserver 2022-09-09T10:00:02,212 copying mitos/webserver/index.txt -> build/lib/mitos/webserver 2022-09-09T10:00:02,217 copying mitos/webserver/news.txt -> build/lib/mitos/webserver 2022-09-09T10:00:02,220 copying mitos/webserver/upload.txt -> build/lib/mitos/webserver 2022-09-09T10:00:02,224 copying mitos/webserver/wait.txt -> build/lib/mitos/webserver 2022-09-09T10:00:02,228 creating build/lib/mitos/mitfi/parser 2022-09-09T10:00:02,229 copying mitos/mitfi/parser/improve_infernal_structure.jar -> build/lib/mitos/mitfi/parser 2022-09-09T10:00:02,233 copying mitos/mitfi/parser/mitfiGeneticCodes -> build/lib/mitos/mitfi/parser 2022-09-09T10:00:02,238 copying mitos/mitfi/parser/mitfi_import-1.1.jar -> build/lib/mitos/mitfi/parser 2022-09-09T10:00:02,244 copying mitos/mitfi/parser/mitfi_import.jar -> build/lib/mitos/mitfi/parser 2022-09-09T10:00:02,268 running build_scripts 2022-09-09T10:00:02,269 creating build/scripts-3.7 2022-09-09T10:00:02,271 copying and adjusting runmitos.py -> build/scripts-3.7 2022-09-09T10:00:02,277 copying analyse.py -> build/scripts-3.7 2022-09-09T10:00:02,282 copying gcpp.py -> build/scripts-3.7 2022-09-09T10:00:02,287 copying and adjusting geneorder.py -> build/scripts-3.7 2022-09-09T10:00:02,293 copying and adjusting getfeatures.py -> build/scripts-3.7 2022-09-09T10:00:02,296 copying and adjusting getinfo.py -> build/scripts-3.7 2022-09-09T10:00:02,299 copying and adjusting refseqsplit.py -> build/scripts-3.7 2022-09-09T10:00:02,303 copying and adjusting subseq.py -> build/scripts-3.7 2022-09-09T10:00:02,308 copying and adjusting taxtree.py -> build/scripts-3.7 2022-09-09T10:00:02,314 copying mitos/plotprot.R -> build/scripts-3.7 2022-09-09T10:00:02,318 copying mitos/plotrna.R -> build/scripts-3.7 2022-09-09T10:00:02,320 changing mode of build/scripts-3.7/runmitos.py from 644 to 755 2022-09-09T10:00:02,320 changing mode of build/scripts-3.7/analyse.py from 644 to 755 2022-09-09T10:00:02,321 changing mode of build/scripts-3.7/gcpp.py from 644 to 755 2022-09-09T10:00:02,321 changing mode of build/scripts-3.7/geneorder.py from 644 to 755 2022-09-09T10:00:02,322 changing mode of build/scripts-3.7/getfeatures.py from 644 to 755 2022-09-09T10:00:02,322 changing mode of build/scripts-3.7/getinfo.py from 644 to 755 2022-09-09T10:00:02,323 changing mode of build/scripts-3.7/refseqsplit.py from 644 to 755 2022-09-09T10:00:02,323 changing mode of build/scripts-3.7/subseq.py from 644 to 755 2022-09-09T10:00:02,324 changing mode of build/scripts-3.7/taxtree.py from 644 to 755 2022-09-09T10:00:03,059 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-09-09T10:00:03,059 setuptools.SetuptoolsDeprecationWarning, 2022-09-09T10:00:03,814 installing to build/bdist.linux-armv7l/wheel 2022-09-09T10:00:03,814 running install 2022-09-09T10:00:03,877 running install_lib 2022-09-09T10:00:04,618 creating build/bdist.linux-armv7l 2022-09-09T10:00:04,619 creating build/bdist.linux-armv7l/wheel 2022-09-09T10:00:04,623 creating build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,625 copying build/lib/mitos/update-blastdb.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,629 copying build/lib/mitos/trnadist.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,636 creating build/bdist.linux-armv7l/wheel/mitos/tax 2022-09-09T10:00:04,637 copying build/lib/mitos/tax/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tax 2022-09-09T10:00:04,642 creating build/bdist.linux-armv7l/wheel/mitos/trna 2022-09-09T10:00:04,644 copying build/lib/mitos/trna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2022-09-09T10:00:04,648 copying build/lib/mitos/trna/arwenscan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2022-09-09T10:00:04,652 copying build/lib/mitos/trna/trnascan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2022-09-09T10:00:04,657 copying build/lib/mitos/mitos-extension2.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,665 creating build/bdist.linux-armv7l/wheel/mitos/webserver 2022-09-09T10:00:04,667 copying build/lib/mitos/webserver/DB_index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2022-09-09T10:00:04,671 copying build/lib/mitos/webserver/news.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2022-09-09T10:00:04,675 copying build/lib/mitos/webserver/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/webserver 2022-09-09T10:00:04,679 copying build/lib/mitos/webserver/upload.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2022-09-09T10:00:04,682 copying build/lib/mitos/webserver/help.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2022-09-09T10:00:04,701 copying build/lib/mitos/webserver/index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2022-09-09T10:00:04,705 copying build/lib/mitos/webserver/DB_search.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2022-09-09T10:00:04,708 copying build/lib/mitos/webserver/wait.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2022-09-09T10:00:04,711 copying build/lib/mitos/webserver/history.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2022-09-09T10:00:04,714 copying build/lib/mitos/mitos-extension.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,719 copying build/lib/mitos/skew.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,723 copying build/lib/mitos/__init__.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,727 creating build/bdist.linux-armv7l/wheel/mitos/update 2022-09-09T10:00:04,729 copying build/lib/mitos/update/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/update 2022-09-09T10:00:04,734 creating build/bdist.linux-armv7l/wheel/mitos/rna 2022-09-09T10:00:04,736 copying build/lib/mitos/rna/forester.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2022-09-09T10:00:04,740 copying build/lib/mitos/rna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2022-09-09T10:00:04,742 copying build/lib/mitos/rna/vienna.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2022-09-09T10:00:04,746 copying build/lib/mitos/booreparser.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,750 copying build/lib/mitos/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,754 creating build/bdist.linux-armv7l/wheel/mitos/codons 2022-09-09T10:00:04,755 copying build/lib/mitos/codons/gc.prt -> build/bdist.linux-armv7l/wheel/mitos/codons 2022-09-09T10:00:04,761 creating build/bdist.linux-armv7l/wheel/mitos/tbl 2022-09-09T10:00:04,762 copying build/lib/mitos/tbl/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tbl 2022-09-09T10:00:04,766 copying build/lib/mitos/create_prot_fasta.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,772 creating build/bdist.linux-armv7l/wheel/mitos/gfffile 2022-09-09T10:00:04,773 copying build/lib/mitos/gfffile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gfffile 2022-09-09T10:00:04,777 creating build/bdist.linux-armv7l/wheel/mitos/mitfi 2022-09-09T10:00:04,778 copying build/lib/mitos/mitfi/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitfi 2022-09-09T10:00:04,783 creating build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2022-09-09T10:00:04,785 copying build/lib/mitos/mitfi/parser/improve_infernal_structure.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2022-09-09T10:00:04,789 copying build/lib/mitos/mitfi/parser/mitfi_import.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2022-09-09T10:00:04,794 copying build/lib/mitos/mitfi/parser/mitfiGeneticCodes -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2022-09-09T10:00:04,797 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2022-09-09T10:00:04,804 creating build/bdist.linux-armv7l/wheel/mitos/feature 2022-09-09T10:00:04,805 copying build/lib/mitos/feature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/feature 2022-09-09T10:00:04,810 copying build/lib/mitos/convert_tree.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,816 creating build/bdist.linux-armv7l/wheel/mitos/mergefeature 2022-09-09T10:00:04,817 copying build/lib/mitos/mergefeature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mergefeature 2022-09-09T10:00:04,823 creating build/bdist.linux-armv7l/wheel/mitos/bedfile 2022-09-09T10:00:04,824 copying build/lib/mitos/bedfile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/bedfile 2022-09-09T10:00:04,830 creating build/bdist.linux-armv7l/wheel/mitos/gb 2022-09-09T10:00:04,831 copying build/lib/mitos/gb/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2022-09-09T10:00:04,836 copying build/lib/mitos/gb/unify.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2022-09-09T10:00:04,840 copying build/lib/mitos/prepareFiles.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,843 copying build/lib/mitos/removegene.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,847 creating build/bdist.linux-armv7l/wheel/mitos/mito 2022-09-09T10:00:04,849 copying build/lib/mitos/mito/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mito 2022-09-09T10:00:04,853 copying build/lib/mitos/inihit.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,858 creating build/bdist.linux-armv7l/wheel/mitos/mitofile 2022-09-09T10:00:04,859 copying build/lib/mitos/mitofile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitofile 2022-09-09T10:00:04,862 copying build/lib/mitos/CONFIG.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,867 creating build/bdist.linux-armv7l/wheel/mitos/blast 2022-09-09T10:00:04,868 copying build/lib/mitos/blast/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/blast 2022-09-09T10:00:04,875 copying build/lib/mitos/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,878 copying build/lib/mitos/mitoloc.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,882 copying build/lib/mitos/ogre-geneorder.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,885 copying build/lib/mitos/CONFIG.py.sample -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,890 creating build/bdist.linux-armv7l/wheel/mitos/sequence 2022-09-09T10:00:04,891 copying build/lib/mitos/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2022-09-09T10:00:04,896 copying build/lib/mitos/sequence/degenerate.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2022-09-09T10:00:04,900 creating build/bdist.linux-armv7l/wheel/mitos/codon 2022-09-09T10:00:04,902 copying build/lib/mitos/codon/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/codon 2022-09-09T10:00:04,905 copying build/lib/mitos/mitoch_revisions.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,911 copying build/lib/mitos/trna-cm.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,925 creating build/bdist.linux-armv7l/wheel/mitos/draw 2022-09-09T10:00:04,926 copying build/lib/mitos/draw/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/draw 2022-09-09T10:00:04,930 copying build/lib/mitos/update-mitolog.py -> build/bdist.linux-armv7l/wheel/mitos 2022-09-09T10:00:04,934 creating build/bdist.linux-armv7l/wheel/mitos/extprog 2022-09-09T10:00:04,935 copying build/lib/mitos/extprog/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/extprog 2022-09-09T10:00:04,939 running install_egg_info 2022-09-09T10:00:05,685 Copying mitos.egg-info to build/bdist.linux-armv7l/wheel/mitos-1.1.0-py3.7.egg-info 2022-09-09T10:00:05,706 running install_scripts 2022-09-09T10:00:05,813 creating build/bdist.linux-armv7l/wheel/mitos-1.1.0.data 2022-09-09T10:00:05,814 creating build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts 2022-09-09T10:00:05,816 copying build/scripts-3.7/runmitos.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts 2022-09-09T10:00:05,822 copying build/scripts-3.7/getinfo.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts 2022-09-09T10:00:05,826 copying build/scripts-3.7/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts 2022-09-09T10:00:05,831 copying build/scripts-3.7/getfeatures.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts 2022-09-09T10:00:05,834 copying build/scripts-3.7/taxtree.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts 2022-09-09T10:00:05,839 copying build/scripts-3.7/analyse.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts 2022-09-09T10:00:05,844 copying build/scripts-3.7/gcpp.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts 2022-09-09T10:00:05,848 copying build/scripts-3.7/subseq.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts 2022-09-09T10:00:05,852 copying build/scripts-3.7/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts 2022-09-09T10:00:05,856 copying build/scripts-3.7/refseqsplit.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts 2022-09-09T10:00:05,859 copying build/scripts-3.7/geneorder.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts 2022-09-09T10:00:05,863 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts/runmitos.py to 755 2022-09-09T10:00:05,864 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts/getinfo.py to 755 2022-09-09T10:00:05,864 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts/plotprot.R to 755 2022-09-09T10:00:05,864 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts/getfeatures.py to 755 2022-09-09T10:00:05,865 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts/taxtree.py to 755 2022-09-09T10:00:05,865 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts/analyse.py to 755 2022-09-09T10:00:05,866 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts/gcpp.py to 755 2022-09-09T10:00:05,866 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts/subseq.py to 755 2022-09-09T10:00:05,867 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts/plotrna.R to 755 2022-09-09T10:00:05,867 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts/refseqsplit.py to 755 2022-09-09T10:00:05,868 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.0.data/scripts/geneorder.py to 755 2022-09-09T10:00:05,904 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-09-09T10:00:05,913 creating build/bdist.linux-armv7l/wheel/mitos-1.1.0.dist-info/WHEEL 2022-09-09T10:00:05,917 creating '/tmp/pip-wheel-erl7wsw6/mitos-1.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-09-09T10:00:05,924 adding 'mitos/CONFIG.py' 2022-09-09T10:00:05,928 adding 'mitos/CONFIG.py.sample' 2022-09-09T10:00:05,930 adding 'mitos/__init__.py' 2022-09-09T10:00:05,933 adding 'mitos/booreparser.py' 2022-09-09T10:00:05,942 adding 'mitos/convert_tree.py' 2022-09-09T10:00:05,947 adding 'mitos/create_prot_fasta.py' 2022-09-09T10:00:05,951 adding 'mitos/inihit.py' 2022-09-09T10:00:05,963 adding 'mitos/mitoch_revisions.py' 2022-09-09T10:00:05,967 adding 'mitos/mitoloc.py' 2022-09-09T10:00:05,972 adding 'mitos/mitos-extension.py' 2022-09-09T10:00:05,977 adding 'mitos/mitos-extension2.py' 2022-09-09T10:00:05,980 adding 'mitos/ogre-geneorder.py' 2022-09-09T10:00:05,982 adding 'mitos/plotprot.R' 2022-09-09T10:00:05,985 adding 'mitos/plotrna.R' 2022-09-09T10:00:05,987 adding 'mitos/prepareFiles.py' 2022-09-09T10:00:05,990 adding 'mitos/removegene.py' 2022-09-09T10:00:05,994 adding 'mitos/skew.py' 2022-09-09T10:00:06,030 adding 'mitos/trna-cm.py' 2022-09-09T10:00:06,042 adding 'mitos/trnadist.py' 2022-09-09T10:00:06,045 adding 'mitos/update-blastdb.py' 2022-09-09T10:00:06,048 adding 'mitos/update-mitolog.py' 2022-09-09T10:00:06,052 adding 'mitos/bedfile/__init__.py' 2022-09-09T10:00:06,065 adding 'mitos/blast/__init__.py' 2022-09-09T10:00:06,069 adding 'mitos/codon/__init__.py' 2022-09-09T10:00:06,074 adding 'mitos/codons/gc.prt' 2022-09-09T10:00:06,077 adding 'mitos/draw/__init__.py' 2022-09-09T10:00:06,081 adding 'mitos/extprog/__init__.py' 2022-09-09T10:00:06,089 adding 'mitos/feature/__init__.py' 2022-09-09T10:00:06,101 adding 'mitos/gb/__init__.py' 2022-09-09T10:00:06,104 adding 'mitos/gb/unify.py' 2022-09-09T10:00:06,108 adding 'mitos/gfffile/__init__.py' 2022-09-09T10:00:06,116 adding 'mitos/mergefeature/__init__.py' 2022-09-09T10:00:06,121 adding 'mitos/mitfi/__init__.py' 2022-09-09T10:00:06,126 adding 'mitos/mitfi/parser/improve_infernal_structure.jar' 2022-09-09T10:00:06,129 adding 'mitos/mitfi/parser/mitfiGeneticCodes' 2022-09-09T10:00:06,137 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar' 2022-09-09T10:00:06,146 adding 'mitos/mitfi/parser/mitfi_import.jar' 2022-09-09T10:00:06,151 adding 'mitos/mito/__init__.py' 2022-09-09T10:00:06,154 adding 'mitos/mitofile/__init__.py' 2022-09-09T10:00:06,157 adding 'mitos/rna/__init__.py' 2022-09-09T10:00:06,160 adding 'mitos/rna/forester.py' 2022-09-09T10:00:06,165 adding 'mitos/rna/vienna.py' 2022-09-09T10:00:06,172 adding 'mitos/sequence/__init__.py' 2022-09-09T10:00:06,175 adding 'mitos/sequence/degenerate.py' 2022-09-09T10:00:06,179 adding 'mitos/tax/__init__.py' 2022-09-09T10:00:06,183 adding 'mitos/tbl/__init__.py' 2022-09-09T10:00:06,186 adding 'mitos/trna/__init__.py' 2022-09-09T10:00:06,190 adding 'mitos/trna/arwenscan.py' 2022-09-09T10:00:06,195 adding 'mitos/trna/trnascan.py' 2022-09-09T10:00:06,201 adding 'mitos/update/__init__.py' 2022-09-09T10:00:06,204 adding 'mitos/webserver/DB_index.txt' 2022-09-09T10:00:06,206 adding 'mitos/webserver/DB_search.txt' 2022-09-09T10:00:06,210 adding 'mitos/webserver/__init__.py' 2022-09-09T10:00:06,268 adding 'mitos/webserver/help.txt' 2022-09-09T10:00:06,276 adding 'mitos/webserver/history.txt' 2022-09-09T10:00:06,279 adding 'mitos/webserver/index.txt' 2022-09-09T10:00:06,281 adding 'mitos/webserver/news.txt' 2022-09-09T10:00:06,284 adding 'mitos/webserver/upload.txt' 2022-09-09T10:00:06,286 adding 'mitos/webserver/wait.txt' 2022-09-09T10:00:06,293 adding 'mitos-1.1.0.data/scripts/analyse.py' 2022-09-09T10:00:06,297 adding 'mitos-1.1.0.data/scripts/gcpp.py' 2022-09-09T10:00:06,302 adding 'mitos-1.1.0.data/scripts/geneorder.py' 2022-09-09T10:00:06,305 adding 'mitos-1.1.0.data/scripts/getfeatures.py' 2022-09-09T10:00:06,307 adding 'mitos-1.1.0.data/scripts/getinfo.py' 2022-09-09T10:00:06,310 adding 'mitos-1.1.0.data/scripts/plotprot.R' 2022-09-09T10:00:06,313 adding 'mitos-1.1.0.data/scripts/plotrna.R' 2022-09-09T10:00:06,315 adding 'mitos-1.1.0.data/scripts/refseqsplit.py' 2022-09-09T10:00:06,320 adding 'mitos-1.1.0.data/scripts/runmitos.py' 2022-09-09T10:00:06,324 adding 'mitos-1.1.0.data/scripts/subseq.py' 2022-09-09T10:00:06,327 adding 'mitos-1.1.0.data/scripts/taxtree.py' 2022-09-09T10:00:06,332 adding 'mitos-1.1.0.dist-info/LICENSE' 2022-09-09T10:00:06,334 adding 'mitos-1.1.0.dist-info/METADATA' 2022-09-09T10:00:06,336 adding 'mitos-1.1.0.dist-info/WHEEL' 2022-09-09T10:00:06,337 adding 'mitos-1.1.0.dist-info/top_level.txt' 2022-09-09T10:00:06,340 adding 'mitos-1.1.0.dist-info/RECORD' 2022-09-09T10:00:06,356 removing build/bdist.linux-armv7l/wheel 2022-09-09T10:00:06,657 Building wheel for mitos (setup.py): finished with status 'done' 2022-09-09T10:00:06,673 Created wheel for mitos: filename=mitos-1.1.0-py3-none-any.whl size=283274 sha256=424b5172258baf2837d8a45e89224c12fdc3cc2a8f4ba0894e5c74111e754e5d 2022-09-09T10:00:06,675 Stored in directory: /tmp/pip-ephem-wheel-cache-lgqi7bdf/wheels/6b/c0/cc/7cb09f60b15d2c488e19cde11c87f2de566b8c6a45d0d7f05f 2022-09-09T10:00:06,702 Successfully built mitos 2022-09-09T10:00:06,730 Removed build tracker: '/tmp/pip-build-tracker-dzses7iq'