2022-09-09T17:17:42,445 Created temporary directory: /tmp/pip-ephem-wheel-cache-54s1pxt8 2022-09-09T17:17:42,451 Created temporary directory: /tmp/pip-build-tracker-de3optpy 2022-09-09T17:17:42,452 Initialized build tracking at /tmp/pip-build-tracker-de3optpy 2022-09-09T17:17:42,452 Created build tracker: /tmp/pip-build-tracker-de3optpy 2022-09-09T17:17:42,453 Entered build tracker: /tmp/pip-build-tracker-de3optpy 2022-09-09T17:17:42,454 Created temporary directory: /tmp/pip-wheel-0l4dv2k9 2022-09-09T17:17:42,529 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-09-09T17:17:42,536 2 location(s) to search for versions of bioontologies: 2022-09-09T17:17:42,536 * https://pypi.org/simple/bioontologies/ 2022-09-09T17:17:42,536 * https://www.piwheels.org/simple/bioontologies/ 2022-09-09T17:17:42,538 Fetching project page and analyzing links: https://pypi.org/simple/bioontologies/ 2022-09-09T17:17:42,539 Getting page https://pypi.org/simple/bioontologies/ 2022-09-09T17:17:42,542 Found index url https://pypi.org/simple 2022-09-09T17:17:42,742 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/02/70/0e872793ea49436026685bb3d51079af3947bb9a699e4ed5ff9550c83310/bioontologies-0.0.1-py3-none-any.whl#sha256=5072a0b9840de2b223ab07d7e645bbbb6df545a6248b1e9056144b47ebb0af2b (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2022-09-09T17:17:42,744 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/e8/9d/8acb7f9144335763c181e32d20062cc121aa2faf6c7d00a44b57533cb766/bioontologies-0.0.1.tar.gz#sha256=8d638acb2eea4506dc531708b9f614d82db8c0b7964d81eff067e56bcf62557d (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2022-09-09T17:17:42,745 Skipping link: 0.0.1 Requires-Python >=3.8: https://files.pythonhosted.org/packages/e8/9d/8acb7f9144335763c181e32d20062cc121aa2faf6c7d00a44b57533cb766/bioontologies-0.0.1.tar.gz#sha256=8d638acb2eea4506dc531708b9f614d82db8c0b7964d81eff067e56bcf62557d (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2022-09-09T17:17:42,745 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/09/50/0e253b578e62eafa162c52627a5f737f83403f62253ce52f40415b75e7c8/bioontologies-0.0.2-py3-none-any.whl#sha256=4c7fa23f0c793d908ada4b66c2d055a55e66ce8b0e252ce8746c8eb4da1e038b (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2022-09-09T17:17:42,747 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/26/5e/66b7a336501576cd1abdec05eeba85455bf8dff4f57f4e7f0f51a1815b31/bioontologies-0.0.2.tar.gz#sha256=6479e9c4e629b0e130430ab8560384241929862a1af5ade721fbbe7762a8e7c2 (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2022-09-09T17:17:42,747 Skipping link: 0.0.2 Requires-Python >=3.8: https://files.pythonhosted.org/packages/26/5e/66b7a336501576cd1abdec05eeba85455bf8dff4f57f4e7f0f51a1815b31/bioontologies-0.0.2.tar.gz#sha256=6479e9c4e629b0e130430ab8560384241929862a1af5ade721fbbe7762a8e7c2 (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2022-09-09T17:17:42,748 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/f1/b4/e8645504342369e0d6600f6273507f8d629bd36445925f1efd76bd7ce189/bioontologies-0.0.3-py3-none-any.whl#sha256=e465dbce0f51014e7cb09b588d14d3b700b3899490a5ca47f0de776a1671fb66 (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2022-09-09T17:17:42,749 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/89/18/7aef50c5fe0330315d874bad225d0c826e68d2a2a2fbaa749ebe025bd42a/bioontologies-0.0.3.tar.gz#sha256=c6c0eb605e5cf162a190ef2f0c8960384184bcc07730a6af048aff825615414c (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2022-09-09T17:17:42,750 Skipping link: 0.0.3 Requires-Python >=3.8: https://files.pythonhosted.org/packages/89/18/7aef50c5fe0330315d874bad225d0c826e68d2a2a2fbaa749ebe025bd42a/bioontologies-0.0.3.tar.gz#sha256=c6c0eb605e5cf162a190ef2f0c8960384184bcc07730a6af048aff825615414c (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2022-09-09T17:17:42,750 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/30/2c/9522cb9b1ce05156b116dce08c4488079059c73e42b26865503b130d83fd/bioontologies-0.0.4-py3-none-any.whl#sha256=320bfc75260a33895e9559fc573a5946281dbec93ed26d1d54c6398864607133 (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7) 2022-09-09T17:17:42,752 Found link https://files.pythonhosted.org/packages/7c/3b/7adedad217cbcf5fd1a182023db493943b7b07e38971e8a30b3c84802758/bioontologies-0.0.4.tar.gz#sha256=a624ee76a9712ccde10795091b3a583ee82194abaf3e589fe92701da3004b177 (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7), version: 0.0.4 2022-09-09T17:17:42,752 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/b4/fa/d769f824f33305b01902985e08d42c22ede00839e1b7c59db3d3943c62ec/bioontologies-0.0.5-py3-none-any.whl#sha256=6d540f193226dfb47da940bd713f852c125d77312bc26109ad05d8c4f0218f71 (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7) 2022-09-09T17:17:42,754 Found link https://files.pythonhosted.org/packages/0d/f5/902b5d8471b8b9ae9491b07619159e365ab8bbd509c604a445a8d9e47433/bioontologies-0.0.5.tar.gz#sha256=21ddd45d8457027c9ba309952e401792b1ffc8bc3fb10c8c7dbe3b3f963716fe (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7), version: 0.0.5 2022-09-09T17:17:42,755 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/e6/d9/75a47d8460fac7bf8cadfd62fa5fb868214a3fadc91cdf83b75ca7b08f7f/bioontologies-0.1.0-py3-none-any.whl#sha256=1133d637760bdc2e624a82fa1c9fc2863e8abb275b991cd8ba3bc4c25864335c (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7) 2022-09-09T17:17:42,756 Found link https://files.pythonhosted.org/packages/3a/61/e3a5584bec3fa16118f3834905aacd6d38984029c69459e47f7fdbbb6c7c/bioontologies-0.1.0.tar.gz#sha256=a351338096b34545eb0fab9bcc88ea12615696640f158441e8f919037812043a (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7), version: 0.1.0 2022-09-09T17:17:42,757 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/e4/f5/c66135d5f4737c398395950cfdeaa6793af6474308714bc3984c82feaf86/bioontologies-0.1.1-py3-none-any.whl#sha256=5371ac6455629fad3b76ab1aaac9d36036dd62e460a8c219ff85adefdd8e31a2 (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7) 2022-09-09T17:17:42,758 Found link https://files.pythonhosted.org/packages/48/59/a9863e733647722d56d58472671f91dc2f08ed5bbb028029fea6f5bd737c/bioontologies-0.1.1.tar.gz#sha256=d9e0d705e6282d5d3d15ad6f85aac85588b56a5814d8ab6787cf816e97cc2c13 (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7), version: 0.1.1 2022-09-09T17:17:42,759 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/85/b6/6d6b59f50e59573263b4a0a7e50256f0e210c5ab90ce8295d2206fddf51d/bioontologies-0.1.2-py3-none-any.whl#sha256=8ea308a770894415eedf4b4a37e2d7e339e7b0e6e947f234165cccea1e00ba6f (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7) 2022-09-09T17:17:42,760 Found link https://files.pythonhosted.org/packages/fd/4e/dde985f17ac6586c578ab9d42be5de724a700215d138d4f3b37cc3016af5/bioontologies-0.1.2.tar.gz#sha256=1a3b2ae21b282314a10c09e584fbe6ce70dbfb522031bd6af9b8b44fcf6f963a (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7), version: 0.1.2 2022-09-09T17:17:42,761 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/b4/11/63bdf16d654ed79ec6ff8e4c01d9c8df9935042578f967426f6455e2ca9b/bioontologies-0.2.0-py3-none-any.whl#sha256=d71cec7a59a15fb35dc74b2caa86ec119dd354469d39e708510cec59cc65eebe (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7) 2022-09-09T17:17:42,762 Found link https://files.pythonhosted.org/packages/51/3d/4d3e5dcbbc810a2934661f432d99cc6f40142c401210a43124f2d7a52922/bioontologies-0.2.0.tar.gz#sha256=e5e1749e8784c0b363d3e2bcc8494ca666ac26aa5c18e038b2fa0c29647044e6 (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.7), version: 0.2.0 2022-09-09T17:17:42,763 Fetching project page and analyzing links: https://www.piwheels.org/simple/bioontologies/ 2022-09-09T17:17:42,764 Getting page https://www.piwheels.org/simple/bioontologies/ 2022-09-09T17:17:42,766 Found index url https://www.piwheels.org/simple 2022-09-09T17:17:42,991 Skipping link: No binaries permitted for bioontologies: https://www.piwheels.org/simple/bioontologies/bioontologies-0.1.2-py3-none-any.whl#sha256=52be2ed3e28c13efdaa5197f792e041f4ba806c86259b176318a867a39bdb0d8 (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.7) 2022-09-09T17:17:42,992 Skipping link: No binaries permitted for bioontologies: https://www.piwheels.org/simple/bioontologies/bioontologies-0.1.1-py3-none-any.whl#sha256=88d6734db023167440ca13719d9900571fed79570cffb5c77594885ee21180b7 (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.7) 2022-09-09T17:17:42,992 Skipping link: No binaries permitted for bioontologies: https://www.piwheels.org/simple/bioontologies/bioontologies-0.1.0-py3-none-any.whl#sha256=6b2521788855b76e2f16e3ec55bcbe578508c5e860badaa6f5fb3ae85a665648 (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.7) 2022-09-09T17:17:42,993 Skipping link: No binaries permitted for bioontologies: https://www.piwheels.org/simple/bioontologies/bioontologies-0.0.5-py3-none-any.whl#sha256=d3bf993999fa7233d2cc31a0fb44bcb35b3d96c91c4e658a2ee1df703edc990f (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.7) 2022-09-09T17:17:42,994 Skipping link: No binaries permitted for bioontologies: https://www.piwheels.org/simple/bioontologies/bioontologies-0.0.4-py3-none-any.whl#sha256=66bef33f75863d0e93f29b8a0dc2aadbbd63ce22ad7154c1d2a7f418ef5f5d4c (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.7) 2022-09-09T17:17:42,994 Skipping link: No binaries permitted for bioontologies: https://www.piwheels.org/simple/bioontologies/bioontologies-0.0.3-py3-none-any.whl#sha256=b5867e31daa04edec6c19aefe40d2fb800c6dc6e3efeeb648ff9705976b5ff3e (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.8) 2022-09-09T17:17:42,995 Skipping link: No binaries permitted for bioontologies: https://www.piwheels.org/simple/bioontologies/bioontologies-0.0.2-py3-none-any.whl#sha256=15a6029a370c2eb76d9c80ab6a4a61f34d97c2336cc3cde43a7d9d33a60a4328 (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.8) 2022-09-09T17:17:42,995 Skipping link: No binaries permitted for bioontologies: https://www.piwheels.org/simple/bioontologies/bioontologies-0.0.1-py3-none-any.whl#sha256=451449226ac2c5784b10d63cdb52cea7fcc466897d1cc58bc103c14aa3f3234c (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.8) 2022-09-09T17:17:42,996 Skipping link: not a file: https://www.piwheels.org/simple/bioontologies/ 2022-09-09T17:17:42,996 Skipping link: not a file: https://pypi.org/simple/bioontologies/ 2022-09-09T17:17:43,034 Given no hashes to check 1 links for project 'bioontologies': discarding no candidates 2022-09-09T17:17:43,065 Collecting bioontologies==0.2.0 2022-09-09T17:17:43,070 Created temporary directory: /tmp/pip-unpack-843vmjo1 2022-09-09T17:17:43,337 Downloading bioontologies-0.2.0.tar.gz (35 kB) 2022-09-09T17:17:43,523 Added bioontologies==0.2.0 from https://files.pythonhosted.org/packages/51/3d/4d3e5dcbbc810a2934661f432d99cc6f40142c401210a43124f2d7a52922/bioontologies-0.2.0.tar.gz#sha256=e5e1749e8784c0b363d3e2bcc8494ca666ac26aa5c18e038b2fa0c29647044e6 to build tracker '/tmp/pip-build-tracker-de3optpy' 2022-09-09T17:17:43,533 Created temporary directory: /tmp/pip-build-env-zusg4iq7 2022-09-09T17:17:43,547 Created temporary directory: /tmp/pip-standalone-pip-39rf2hl9 2022-09-09T17:17:45,787 Installing build dependencies: started 2022-09-09T17:17:45,789 Running command pip subprocess to install build dependencies 2022-09-09T17:17:55,431 Using pip 22.1.2 from /tmp/pip-standalone-pip-39rf2hl9/__env_pip__.zip/pip (python 3.7) 2022-09-09T17:17:57,211 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-09-09T17:18:01,628 Collecting setuptools 2022-09-09T17:18:01,915 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.3.0-py3-none-any.whl (1.2 MB) 2022-09-09T17:18:02,584 Collecting wheel 2022-09-09T17:18:02,617 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-09-09T17:18:15,669 Installing collected packages: wheel, setuptools 2022-09-09T17:18:15,937 Creating /tmp/pip-build-env-zusg4iq7/overlay/bin 2022-09-09T17:18:15,941 changing mode of /tmp/pip-build-env-zusg4iq7/overlay/bin/wheel to 755 2022-09-09T17:18:20,768 Successfully installed setuptools-65.3.0 wheel-0.37.1 2022-09-09T17:18:21,003 --- Logging error --- 2022-09-09T17:18:21,004 Traceback (most recent call last): 2022-09-09T17:18:21,004 File "/tmp/pip-standalone-pip-39rf2hl9/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-09-09T17:18:21,004 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-09-09T17:18:21,005 File "/tmp/pip-standalone-pip-39rf2hl9/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-09-09T17:18:21,005 extend(render(renderable, render_options)) 2022-09-09T17:18:21,005 File "/tmp/pip-standalone-pip-39rf2hl9/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-09-09T17:18:21,006 for render_output in iter_render: 2022-09-09T17:18:21,006 File "/tmp/pip-standalone-pip-39rf2hl9/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-09-09T17:18:21,006 for line in lines: 2022-09-09T17:18:21,006 File "/tmp/pip-standalone-pip-39rf2hl9/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-09-09T17:18:21,007 for segment in segments: 2022-09-09T17:18:21,007 File "/tmp/pip-standalone-pip-39rf2hl9/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-09-09T17:18:21,007 renderable = rich_cast(renderable) 2022-09-09T17:18:21,008 File "/tmp/pip-standalone-pip-39rf2hl9/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-09-09T17:18:21,008 renderable = cast_method() 2022-09-09T17:18:21,008 File "/tmp/pip-standalone-pip-39rf2hl9/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-09-09T17:18:21,009 pip_cmd = get_best_invocation_for_this_pip() 2022-09-09T17:18:21,009 File "/tmp/pip-standalone-pip-39rf2hl9/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 60, in get_best_invocation_for_this_pip 2022-09-09T17:18:21,009 os.path.join(binary_prefix, exe_name), 2022-09-09T17:18:21,009 File "/usr/lib/python3.7/genericpath.py", line 97, in samefile 2022-09-09T17:18:21,010 s2 = os.stat(f2) 2022-09-09T17:18:21,010 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.7' 2022-09-09T17:18:21,010 Call stack: 2022-09-09T17:18:21,011 File "/usr/lib/python3.7/runpy.py", line 193, in _run_module_as_main 2022-09-09T17:18:21,011 "__main__", mod_spec) 2022-09-09T17:18:21,011 File "/usr/lib/python3.7/runpy.py", line 85, in _run_code 2022-09-09T17:18:21,011 exec(code, run_globals) 2022-09-09T17:18:21,012 File "/tmp/pip-standalone-pip-39rf2hl9/__env_pip__.zip/pip/__main__.py", line 31, in 2022-09-09T17:18:21,012 sys.exit(_main()) 2022-09-09T17:18:21,012 File "/tmp/pip-standalone-pip-39rf2hl9/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-09-09T17:18:21,013 return command.main(cmd_args) 2022-09-09T17:18:21,013 File "/tmp/pip-standalone-pip-39rf2hl9/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-09-09T17:18:21,013 return self._main(args) 2022-09-09T17:18:21,014 File "/tmp/pip-standalone-pip-39rf2hl9/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-09-09T17:18:21,014 self.handle_pip_version_check(options) 2022-09-09T17:18:21,014 File "/tmp/pip-standalone-pip-39rf2hl9/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-09-09T17:18:21,015 pip_self_version_check(session, options) 2022-09-09T17:18:21,015 File "/tmp/pip-standalone-pip-39rf2hl9/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-09-09T17:18:21,015 logger.info("[present-rich] %s", upgrade_prompt) 2022-09-09T17:18:21,016 File "/usr/lib/python3.7/logging/__init__.py", line 1383, in info 2022-09-09T17:18:21,016 self._log(INFO, msg, args, **kwargs) 2022-09-09T17:18:21,016 File "/usr/lib/python3.7/logging/__init__.py", line 1519, in _log 2022-09-09T17:18:21,017 self.handle(record) 2022-09-09T17:18:21,017 File "/usr/lib/python3.7/logging/__init__.py", line 1529, in handle 2022-09-09T17:18:21,017 self.callHandlers(record) 2022-09-09T17:18:21,018 File "/usr/lib/python3.7/logging/__init__.py", line 1591, in callHandlers 2022-09-09T17:18:21,018 hdlr.handle(record) 2022-09-09T17:18:21,018 File "/usr/lib/python3.7/logging/__init__.py", line 905, in handle 2022-09-09T17:18:21,018 self.emit(record) 2022-09-09T17:18:21,019 File "/tmp/pip-standalone-pip-39rf2hl9/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-09-09T17:18:21,019 self.handleError(record) 2022-09-09T17:18:21,019 Message: '[present-rich] %s' 2022-09-09T17:18:21,020 Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),) 2022-09-09T17:18:21,516 Installing build dependencies: finished with status 'done' 2022-09-09T17:18:21,544 Getting requirements to build wheel: started 2022-09-09T17:18:21,546 Running command Getting requirements to build wheel 2022-09-09T17:18:26,691 running egg_info 2022-09-09T17:18:27,319 writing src/bioontologies.egg-info/PKG-INFO 2022-09-09T17:18:27,908 writing dependency_links to src/bioontologies.egg-info/dependency_links.txt 2022-09-09T17:18:29,673 writing entry points to src/bioontologies.egg-info/entry_points.txt 2022-09-09T17:18:30,854 writing requirements to src/bioontologies.egg-info/requires.txt 2022-09-09T17:18:31,446 writing top-level names to src/bioontologies.egg-info/top_level.txt 2022-09-09T17:18:32,160 reading manifest file 'src/bioontologies.egg-info/SOURCES.txt' 2022-09-09T17:18:32,169 reading manifest template 'MANIFEST.in' 2022-09-09T17:18:32,177 /usr/local/lib/python3.7/dist-packages/setuptools/config/setupcfg.py:459: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-09-09T17:18:32,177 warnings.warn(msg, warning_class) 2022-09-09T17:18:32,178 no previously-included directories found matching 'scripts' 2022-09-09T17:18:32,178 no previously-included directories found matching 'notebooks' 2022-09-09T17:18:32,179 no previously-included directories found matching 'tests/.pytest_cache' 2022-09-09T17:18:32,196 warning: no files found matching '*.png' under directory 'docs/source' 2022-09-09T17:18:32,197 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2022-09-09T17:18:32,199 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2022-09-09T17:18:32,200 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-09-09T17:18:32,201 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2022-09-09T17:18:32,202 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2022-09-09T17:18:32,204 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2022-09-09T17:18:32,206 warning: no previously-included files found matching 'tox.ini' 2022-09-09T17:18:32,206 warning: no previously-included files found matching '.flake8' 2022-09-09T17:18:32,207 warning: no previously-included files found matching '.bumpversion.cfg' 2022-09-09T17:18:32,208 warning: no previously-included files found matching '.readthedocs.yml' 2022-09-09T17:18:32,209 adding license file 'LICENSE' 2022-09-09T17:18:32,216 writing manifest file 'src/bioontologies.egg-info/SOURCES.txt' 2022-09-09T17:18:32,434 Getting requirements to build wheel: finished with status 'done' 2022-09-09T17:18:32,455 Created temporary directory: /tmp/pip-modern-metadata-idz_ommf 2022-09-09T17:18:32,460 Preparing metadata (pyproject.toml): started 2022-09-09T17:18:32,462 Running command Preparing metadata (pyproject.toml) 2022-09-09T17:18:37,140 running dist_info 2022-09-09T17:18:37,795 creating /tmp/pip-modern-metadata-idz_ommf/bioontologies.egg-info 2022-09-09T17:18:38,435 writing /tmp/pip-modern-metadata-idz_ommf/bioontologies.egg-info/PKG-INFO 2022-09-09T17:18:39,035 writing dependency_links to /tmp/pip-modern-metadata-idz_ommf/bioontologies.egg-info/dependency_links.txt 2022-09-09T17:18:40,840 writing entry points to /tmp/pip-modern-metadata-idz_ommf/bioontologies.egg-info/entry_points.txt 2022-09-09T17:18:42,041 writing requirements to /tmp/pip-modern-metadata-idz_ommf/bioontologies.egg-info/requires.txt 2022-09-09T17:18:42,639 writing top-level names to /tmp/pip-modern-metadata-idz_ommf/bioontologies.egg-info/top_level.txt 2022-09-09T17:18:42,641 writing manifest file '/tmp/pip-modern-metadata-idz_ommf/bioontologies.egg-info/SOURCES.txt' 2022-09-09T17:18:43,367 reading manifest file '/tmp/pip-modern-metadata-idz_ommf/bioontologies.egg-info/SOURCES.txt' 2022-09-09T17:18:43,371 reading manifest template 'MANIFEST.in' 2022-09-09T17:18:43,382 /usr/local/lib/python3.7/dist-packages/setuptools/config/setupcfg.py:459: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-09-09T17:18:43,382 warnings.warn(msg, warning_class) 2022-09-09T17:18:43,382 no previously-included directories found matching 'scripts' 2022-09-09T17:18:43,383 no previously-included directories found matching 'notebooks' 2022-09-09T17:18:43,384 no previously-included directories found matching 'tests/.pytest_cache' 2022-09-09T17:18:43,402 warning: no files found matching '*.png' under directory 'docs/source' 2022-09-09T17:18:43,403 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2022-09-09T17:18:43,404 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2022-09-09T17:18:43,405 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-09-09T17:18:43,407 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2022-09-09T17:18:43,408 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2022-09-09T17:18:43,409 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2022-09-09T17:18:43,410 warning: no previously-included files found matching 'tox.ini' 2022-09-09T17:18:43,411 warning: no previously-included files found matching '.flake8' 2022-09-09T17:18:43,412 warning: no previously-included files found matching '.bumpversion.cfg' 2022-09-09T17:18:43,413 warning: no previously-included files found matching '.readthedocs.yml' 2022-09-09T17:18:43,413 adding license file 'LICENSE' 2022-09-09T17:18:43,419 writing manifest file '/tmp/pip-modern-metadata-idz_ommf/bioontologies.egg-info/SOURCES.txt' 2022-09-09T17:18:43,422 creating '/tmp/pip-modern-metadata-idz_ommf/bioontologies-0.2.0.dist-info' 2022-09-09T17:18:43,908 Preparing metadata (pyproject.toml): finished with status 'done' 2022-09-09T17:18:43,925 Source in /tmp/pip-wheel-0l4dv2k9/bioontologies_5a4bed4d0a2f4238846b1002bca98123 has version 0.2.0, which satisfies requirement bioontologies==0.2.0 from https://files.pythonhosted.org/packages/51/3d/4d3e5dcbbc810a2934661f432d99cc6f40142c401210a43124f2d7a52922/bioontologies-0.2.0.tar.gz#sha256=e5e1749e8784c0b363d3e2bcc8494ca666ac26aa5c18e038b2fa0c29647044e6 2022-09-09T17:18:43,927 Removed bioontologies==0.2.0 from https://files.pythonhosted.org/packages/51/3d/4d3e5dcbbc810a2934661f432d99cc6f40142c401210a43124f2d7a52922/bioontologies-0.2.0.tar.gz#sha256=e5e1749e8784c0b363d3e2bcc8494ca666ac26aa5c18e038b2fa0c29647044e6 from build tracker '/tmp/pip-build-tracker-de3optpy' 2022-09-09T17:18:43,943 Created temporary directory: /tmp/pip-unpack-qbadg6xo 2022-09-09T17:18:43,944 Building wheels for collected packages: bioontologies 2022-09-09T17:18:43,954 Created temporary directory: /tmp/pip-wheel-rlosn1tx 2022-09-09T17:18:43,954 Destination directory: /tmp/pip-wheel-rlosn1tx 2022-09-09T17:18:43,960 Building wheel for bioontologies (pyproject.toml): started 2022-09-09T17:18:43,962 Running command Building wheel for bioontologies (pyproject.toml) 2022-09-09T17:18:48,110 running bdist_wheel 2022-09-09T17:18:49,332 running build 2022-09-09T17:18:49,333 running build_py 2022-09-09T17:18:49,958 creating build 2022-09-09T17:18:49,959 creating build/lib 2022-09-09T17:18:49,960 creating build/lib/bioontologies 2022-09-09T17:18:49,962 copying src/bioontologies/obograph.py -> build/lib/bioontologies 2022-09-09T17:18:49,968 copying src/bioontologies/__main__.py -> build/lib/bioontologies 2022-09-09T17:18:49,972 copying src/bioontologies/version.py -> build/lib/bioontologies 2022-09-09T17:18:49,975 copying src/bioontologies/cli.py -> build/lib/bioontologies 2022-09-09T17:18:49,980 copying src/bioontologies/robot.py -> build/lib/bioontologies 2022-09-09T17:18:49,984 copying src/bioontologies/__init__.py -> build/lib/bioontologies 2022-09-09T17:18:49,989 creating build/lib/bioontologies/upgrade 2022-09-09T17:18:49,991 copying src/bioontologies/upgrade/import_debio.py -> build/lib/bioontologies/upgrade 2022-09-09T17:18:49,994 copying src/bioontologies/upgrade/__init__.py -> build/lib/bioontologies/upgrade 2022-09-09T17:18:49,999 creating build/lib/bioontologies/relations 2022-09-09T17:18:50,001 copying src/bioontologies/relations/api.py -> build/lib/bioontologies/relations 2022-09-09T17:18:50,004 copying src/bioontologies/relations/__init__.py -> build/lib/bioontologies/relations 2022-09-09T17:18:50,007 running egg_info 2022-09-09T17:18:51,275 writing src/bioontologies.egg-info/PKG-INFO 2022-09-09T17:18:51,911 writing dependency_links to src/bioontologies.egg-info/dependency_links.txt 2022-09-09T17:18:53,671 writing entry points to src/bioontologies.egg-info/entry_points.txt 2022-09-09T17:18:54,848 writing requirements to src/bioontologies.egg-info/requires.txt 2022-09-09T17:18:55,438 writing top-level names to src/bioontologies.egg-info/top_level.txt 2022-09-09T17:18:55,485 reading manifest file 'src/bioontologies.egg-info/SOURCES.txt' 2022-09-09T17:18:55,494 reading manifest template 'MANIFEST.in' 2022-09-09T17:18:55,502 /usr/local/lib/python3.7/dist-packages/setuptools/config/setupcfg.py:459: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-09-09T17:18:55,502 warnings.warn(msg, warning_class) 2022-09-09T17:18:55,502 no previously-included directories found matching 'scripts' 2022-09-09T17:18:55,503 no previously-included directories found matching 'notebooks' 2022-09-09T17:18:55,504 no previously-included directories found matching 'tests/.pytest_cache' 2022-09-09T17:18:55,522 warning: no files found matching '*.png' under directory 'docs/source' 2022-09-09T17:18:55,524 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2022-09-09T17:18:55,525 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2022-09-09T17:18:55,526 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-09-09T17:18:55,527 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2022-09-09T17:18:55,529 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2022-09-09T17:18:55,530 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2022-09-09T17:18:55,531 warning: no previously-included files found matching 'tox.ini' 2022-09-09T17:18:55,532 warning: no previously-included files found matching '.flake8' 2022-09-09T17:18:55,533 warning: no previously-included files found matching '.bumpversion.cfg' 2022-09-09T17:18:55,534 warning: no previously-included files found matching '.readthedocs.yml' 2022-09-09T17:18:55,535 adding license file 'LICENSE' 2022-09-09T17:18:55,542 writing manifest file 'src/bioontologies.egg-info/SOURCES.txt' 2022-09-09T17:18:55,547 copying src/bioontologies/py.typed -> build/lib/bioontologies 2022-09-09T17:18:55,552 copying src/bioontologies/upgrade/data.tsv -> build/lib/bioontologies/upgrade 2022-09-09T17:18:55,557 copying src/bioontologies/relations/data.json -> build/lib/bioontologies/relations 2022-09-09T17:18:56,838 installing to build/bdist.linux-armv7l/wheel 2022-09-09T17:18:56,838 running install 2022-09-09T17:18:56,898 running install_lib 2022-09-09T17:18:57,539 creating build/bdist.linux-armv7l 2022-09-09T17:18:57,540 creating build/bdist.linux-armv7l/wheel 2022-09-09T17:18:57,543 creating build/bdist.linux-armv7l/wheel/bioontologies 2022-09-09T17:18:57,545 copying build/lib/bioontologies/obograph.py -> build/bdist.linux-armv7l/wheel/bioontologies 2022-09-09T17:18:57,550 copying build/lib/bioontologies/__main__.py -> build/bdist.linux-armv7l/wheel/bioontologies 2022-09-09T17:18:57,554 copying build/lib/bioontologies/version.py -> build/bdist.linux-armv7l/wheel/bioontologies 2022-09-09T17:18:57,559 creating build/bdist.linux-armv7l/wheel/bioontologies/upgrade 2022-09-09T17:18:57,560 copying build/lib/bioontologies/upgrade/import_debio.py -> build/bdist.linux-armv7l/wheel/bioontologies/upgrade 2022-09-09T17:18:57,564 copying build/lib/bioontologies/upgrade/data.tsv -> build/bdist.linux-armv7l/wheel/bioontologies/upgrade 2022-09-09T17:18:57,569 copying build/lib/bioontologies/upgrade/__init__.py -> build/bdist.linux-armv7l/wheel/bioontologies/upgrade 2022-09-09T17:18:57,572 copying build/lib/bioontologies/cli.py -> build/bdist.linux-armv7l/wheel/bioontologies 2022-09-09T17:18:57,577 copying build/lib/bioontologies/robot.py -> build/bdist.linux-armv7l/wheel/bioontologies 2022-09-09T17:18:57,581 copying build/lib/bioontologies/__init__.py -> build/bdist.linux-armv7l/wheel/bioontologies 2022-09-09T17:18:57,586 creating build/bdist.linux-armv7l/wheel/bioontologies/relations 2022-09-09T17:18:57,588 copying build/lib/bioontologies/relations/data.json -> build/bdist.linux-armv7l/wheel/bioontologies/relations 2022-09-09T17:18:57,598 copying build/lib/bioontologies/relations/api.py -> build/bdist.linux-armv7l/wheel/bioontologies/relations 2022-09-09T17:18:57,602 copying build/lib/bioontologies/relations/__init__.py -> build/bdist.linux-armv7l/wheel/bioontologies/relations 2022-09-09T17:18:57,606 copying build/lib/bioontologies/py.typed -> build/bdist.linux-armv7l/wheel/bioontologies 2022-09-09T17:18:57,609 running install_egg_info 2022-09-09T17:18:58,248 Copying src/bioontologies.egg-info to build/bdist.linux-armv7l/wheel/bioontologies-0.2.0-py3.7.egg-info 2022-09-09T17:18:58,277 running install_scripts 2022-09-09T17:18:58,477 creating build/bdist.linux-armv7l/wheel/bioontologies-0.2.0.dist-info/WHEEL 2022-09-09T17:18:58,481 creating '/tmp/pip-wheel-rlosn1tx/tmpbdzwdfye/bioontologies-0.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-09-09T17:18:58,486 adding 'bioontologies/__init__.py' 2022-09-09T17:18:58,488 adding 'bioontologies/__main__.py' 2022-09-09T17:18:58,491 adding 'bioontologies/cli.py' 2022-09-09T17:18:58,497 adding 'bioontologies/obograph.py' 2022-09-09T17:18:58,499 adding 'bioontologies/py.typed' 2022-09-09T17:18:58,503 adding 'bioontologies/robot.py' 2022-09-09T17:18:58,505 adding 'bioontologies/version.py' 2022-09-09T17:18:58,509 adding 'bioontologies/relations/__init__.py' 2022-09-09T17:18:58,511 adding 'bioontologies/relations/api.py' 2022-09-09T17:18:58,525 adding 'bioontologies/relations/data.json' 2022-09-09T17:18:58,531 adding 'bioontologies/upgrade/__init__.py' 2022-09-09T17:18:58,534 adding 'bioontologies/upgrade/data.tsv' 2022-09-09T17:18:58,537 adding 'bioontologies/upgrade/import_debio.py' 2022-09-09T17:18:58,541 adding 'bioontologies-0.2.0.dist-info/LICENSE' 2022-09-09T17:18:58,544 adding 'bioontologies-0.2.0.dist-info/METADATA' 2022-09-09T17:18:58,546 adding 'bioontologies-0.2.0.dist-info/WHEEL' 2022-09-09T17:18:58,548 adding 'bioontologies-0.2.0.dist-info/entry_points.txt' 2022-09-09T17:18:58,549 adding 'bioontologies-0.2.0.dist-info/top_level.txt' 2022-09-09T17:18:58,551 adding 'bioontologies-0.2.0.dist-info/RECORD' 2022-09-09T17:18:58,554 removing build/bdist.linux-armv7l/wheel 2022-09-09T17:18:58,836 Building wheel for bioontologies (pyproject.toml): finished with status 'done' 2022-09-09T17:18:58,850 Created wheel for bioontologies: filename=bioontologies-0.2.0-py3-none-any.whl size=30098 sha256=5d2800b7db40c68047ec3abf2321dd9d886a084933750248802466b881ff4267 2022-09-09T17:18:58,852 Stored in directory: /tmp/pip-ephem-wheel-cache-54s1pxt8/wheels/c0/73/09/8748b6b1977e8d4f00331b136ad63b942673e6762b1eb04dc8 2022-09-09T17:18:58,879 Successfully built bioontologies 2022-09-09T17:18:58,888 Removed build tracker: '/tmp/pip-build-tracker-de3optpy'