2022-09-14T10:22:57,560 Created temporary directory: /tmp/pip-ephem-wheel-cache-jf9aubx2 2022-09-14T10:22:57,565 Created temporary directory: /tmp/pip-build-tracker-rwfn5bcp 2022-09-14T10:22:57,566 Initialized build tracking at /tmp/pip-build-tracker-rwfn5bcp 2022-09-14T10:22:57,567 Created build tracker: /tmp/pip-build-tracker-rwfn5bcp 2022-09-14T10:22:57,567 Entered build tracker: /tmp/pip-build-tracker-rwfn5bcp 2022-09-14T10:22:57,568 Created temporary directory: /tmp/pip-wheel-aayf0jfo 2022-09-14T10:22:57,640 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-09-14T10:22:57,649 2 location(s) to search for versions of atlas-densities: 2022-09-14T10:22:57,649 * https://pypi.org/simple/atlas-densities/ 2022-09-14T10:22:57,649 * https://www.piwheels.org/simple/atlas-densities/ 2022-09-14T10:22:57,650 Fetching project page and analyzing links: https://pypi.org/simple/atlas-densities/ 2022-09-14T10:22:57,651 Getting page https://pypi.org/simple/atlas-densities/ 2022-09-14T10:22:57,655 Found index url https://pypi.org/simple 2022-09-14T10:22:57,843 Found link https://files.pythonhosted.org/packages/75/a0/31e863dae4118b005ede7f6d9098a6910b9864be8a7912235629124fd1fe/atlas-densities-0.1.1.dev1.tar.gz#sha256=2c4742a20fc5230ada3c3a28c83816d9295cd1513ee6fc05f22862d2efe6587e (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.1.dev1 2022-09-14T10:22:57,844 Found link https://files.pythonhosted.org/packages/de/06/e8be8865b4bd500f567d873b884c95bc950e82d6b629daf4d2b51feee07f/atlas-densities-0.1.1.tar.gz#sha256=1709c487026f32eade8d28610e5cf111293a69894934156fb5b52108076f7bcf (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.1 2022-09-14T10:22:57,846 Found link https://files.pythonhosted.org/packages/1c/7f/424e4e2a31de90b29ad4b08c106a94110c84fd3472800a26707cb6793cda/atlas-densities-0.1.2.tar.gz#sha256=0199629b42ea217e939f82f6d8a20690e69735b89969c1aab184a8228218ed61 (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.2 2022-09-14T10:22:57,847 Fetching project page and analyzing links: https://www.piwheels.org/simple/atlas-densities/ 2022-09-14T10:22:57,847 Getting page https://www.piwheels.org/simple/atlas-densities/ 2022-09-14T10:22:57,849 Found index url https://www.piwheels.org/simple 2022-09-14T10:22:58,064 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.1-py3-none-any.whl#sha256=0d8958b6a96c5a8bbb5f56954b074f97f56f62d4bf7d2feb02f324fdd9365ce4 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2022-09-14T10:22:58,064 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.1.dev1-py3-none-any.whl#sha256=d5e13258a7e5662c891cc5061dc517d14138a9ea76e72ad43d422c688c5c73b6 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2022-09-14T10:22:58,065 Skipping link: not a file: https://www.piwheels.org/simple/atlas-densities/ 2022-09-14T10:22:58,065 Skipping link: not a file: https://pypi.org/simple/atlas-densities/ 2022-09-14T10:22:58,099 Given no hashes to check 1 links for project 'atlas-densities': discarding no candidates 2022-09-14T10:22:58,138 Collecting atlas-densities==0.1.2 2022-09-14T10:22:58,142 Created temporary directory: /tmp/pip-unpack-tbq7umlo 2022-09-14T10:22:58,714 Downloading atlas-densities-0.1.2.tar.gz (1.3 MB) 2022-09-14T10:23:00,037 Added atlas-densities==0.1.2 from https://files.pythonhosted.org/packages/1c/7f/424e4e2a31de90b29ad4b08c106a94110c84fd3472800a26707cb6793cda/atlas-densities-0.1.2.tar.gz#sha256=0199629b42ea217e939f82f6d8a20690e69735b89969c1aab184a8228218ed61 to build tracker '/tmp/pip-build-tracker-rwfn5bcp' 2022-09-14T10:23:00,039 Running setup.py (path:/tmp/pip-wheel-aayf0jfo/atlas-densities_77d6c1f603e14bac8907897399bb2b2f/setup.py) egg_info for package atlas-densities 2022-09-14T10:23:00,041 Created temporary directory: /tmp/pip-pip-egg-info-2rcti4h2 2022-09-14T10:23:00,041 Preparing metadata (setup.py): started 2022-09-14T10:23:00,043 Running command python setup.py egg_info 2022-09-14T10:23:22,333 running egg_info 2022-09-14T10:23:22,338 creating /tmp/pip-pip-egg-info-2rcti4h2/atlas_densities.egg-info 2022-09-14T10:23:23,020 writing /tmp/pip-pip-egg-info-2rcti4h2/atlas_densities.egg-info/PKG-INFO 2022-09-14T10:23:23,668 writing dependency_links to /tmp/pip-pip-egg-info-2rcti4h2/atlas_densities.egg-info/dependency_links.txt 2022-09-14T10:23:25,419 writing entry points to /tmp/pip-pip-egg-info-2rcti4h2/atlas_densities.egg-info/entry_points.txt 2022-09-14T10:23:26,591 writing requirements to /tmp/pip-pip-egg-info-2rcti4h2/atlas_densities.egg-info/requires.txt 2022-09-14T10:23:27,179 writing top-level names to /tmp/pip-pip-egg-info-2rcti4h2/atlas_densities.egg-info/top_level.txt 2022-09-14T10:23:27,182 writing manifest file '/tmp/pip-pip-egg-info-2rcti4h2/atlas_densities.egg-info/SOURCES.txt' 2022-09-14T10:23:28,878 /usr/local/lib/python3.7/dist-packages/setuptools/installer.py:30: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. 2022-09-14T10:23:28,879 SetuptoolsDeprecationWarning, 2022-09-14T10:23:28,879 listing git files failed - pretending there aren't any 2022-09-14T10:23:28,903 reading manifest file '/tmp/pip-pip-egg-info-2rcti4h2/atlas_densities.egg-info/SOURCES.txt' 2022-09-14T10:23:28,907 reading manifest template 'MANIFEST.in' 2022-09-14T10:23:28,977 adding license file 'LICENSE.txt' 2022-09-14T10:23:28,978 adding license file 'AUTHORS.txt' 2022-09-14T10:23:28,995 writing manifest file '/tmp/pip-pip-egg-info-2rcti4h2/atlas_densities.egg-info/SOURCES.txt' 2022-09-14T10:23:29,238 Preparing metadata (setup.py): finished with status 'done' 2022-09-14T10:23:29,252 Source in /tmp/pip-wheel-aayf0jfo/atlas-densities_77d6c1f603e14bac8907897399bb2b2f has version 0.1.2, which satisfies requirement atlas-densities==0.1.2 from https://files.pythonhosted.org/packages/1c/7f/424e4e2a31de90b29ad4b08c106a94110c84fd3472800a26707cb6793cda/atlas-densities-0.1.2.tar.gz#sha256=0199629b42ea217e939f82f6d8a20690e69735b89969c1aab184a8228218ed61 2022-09-14T10:23:29,254 Removed atlas-densities==0.1.2 from https://files.pythonhosted.org/packages/1c/7f/424e4e2a31de90b29ad4b08c106a94110c84fd3472800a26707cb6793cda/atlas-densities-0.1.2.tar.gz#sha256=0199629b42ea217e939f82f6d8a20690e69735b89969c1aab184a8228218ed61 from build tracker '/tmp/pip-build-tracker-rwfn5bcp' 2022-09-14T10:23:29,271 Created temporary directory: /tmp/pip-unpack-hpxsx0ls 2022-09-14T10:23:29,272 Building wheels for collected packages: atlas-densities 2022-09-14T10:23:29,282 Created temporary directory: /tmp/pip-wheel-nx2nzlcd 2022-09-14T10:23:29,282 Building wheel for atlas-densities (setup.py): started 2022-09-14T10:23:29,284 Destination directory: /tmp/pip-wheel-nx2nzlcd 2022-09-14T10:23:29,285 Running command python setup.py bdist_wheel 2022-09-14T10:23:32,135 /usr/local/lib/python3.7/dist-packages/setuptools/installer.py:30: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. 2022-09-14T10:23:32,136 SetuptoolsDeprecationWarning, 2022-09-14T10:23:42,046 running bdist_wheel 2022-09-14T10:23:43,581 running build 2022-09-14T10:23:43,582 running build_py 2022-09-14T10:23:44,336 creating build 2022-09-14T10:23:44,337 creating build/lib 2022-09-14T10:23:44,338 creating build/lib/atlas_densities 2022-09-14T10:23:44,340 copying atlas_densities/__init__.py -> build/lib/atlas_densities 2022-09-14T10:23:44,344 copying atlas_densities/exceptions.py -> build/lib/atlas_densities 2022-09-14T10:23:44,348 copying atlas_densities/version.py -> build/lib/atlas_densities 2022-09-14T10:23:44,351 copying atlas_densities/utils.py -> build/lib/atlas_densities 2022-09-14T10:23:44,357 creating build/lib/tests 2022-09-14T10:23:44,359 copying tests/__init__.py -> build/lib/tests 2022-09-14T10:23:44,362 copying tests/mocking_tools.py -> build/lib/tests 2022-09-14T10:23:44,366 copying tests/test_utils.py -> build/lib/tests 2022-09-14T10:23:44,372 creating build/lib/atlas_densities/combination 2022-09-14T10:23:44,373 copying atlas_densities/combination/__init__.py -> build/lib/atlas_densities/combination 2022-09-14T10:23:44,376 copying atlas_densities/combination/markers_combinator.py -> build/lib/atlas_densities/combination 2022-09-14T10:23:44,381 copying atlas_densities/combination/annotations_combinator.py -> build/lib/atlas_densities/combination 2022-09-14T10:23:44,388 creating build/lib/atlas_densities/densities 2022-09-14T10:23:44,390 copying atlas_densities/densities/mtype_densities_from_profiles.py -> build/lib/atlas_densities/densities 2022-09-14T10:23:44,395 copying atlas_densities/densities/fitting.py -> build/lib/atlas_densities/densities 2022-09-14T10:23:44,401 copying atlas_densities/densities/__init__.py -> build/lib/atlas_densities/densities 2022-09-14T10:23:44,404 copying atlas_densities/densities/glia_densities.py -> build/lib/atlas_densities/densities 2022-09-14T10:23:44,408 copying atlas_densities/densities/inhibitory_neuron_densities_optimization.py -> build/lib/atlas_densities/densities 2022-09-14T10:23:44,414 copying atlas_densities/densities/cell_density.py -> build/lib/atlas_densities/densities 2022-09-14T10:23:44,418 copying atlas_densities/densities/inhibitory_neuron_density.py -> build/lib/atlas_densities/densities 2022-09-14T10:23:44,423 copying atlas_densities/densities/mtype_densities_from_map.py -> build/lib/atlas_densities/densities 2022-09-14T10:23:44,427 copying atlas_densities/densities/excel_reader.py -> build/lib/atlas_densities/densities 2022-09-14T10:23:44,432 copying atlas_densities/densities/cell_counts.py -> build/lib/atlas_densities/densities 2022-09-14T10:23:44,436 copying atlas_densities/densities/inhibitory_neuron_densities_helper.py -> build/lib/atlas_densities/densities 2022-09-14T10:23:44,440 copying atlas_densities/densities/utils.py -> build/lib/atlas_densities/densities 2022-09-14T10:23:44,445 copying atlas_densities/densities/measurement_to_density.py -> build/lib/atlas_densities/densities 2022-09-14T10:23:44,450 copying atlas_densities/densities/mtype_densities_from_composition.py -> build/lib/atlas_densities/densities 2022-09-14T10:23:44,453 copying atlas_densities/densities/refined_inhibitory_neuron_densities.py -> build/lib/atlas_densities/densities 2022-09-14T10:23:44,460 creating build/lib/atlas_densities/app 2022-09-14T10:23:44,462 copying atlas_densities/app/mtype_densities.py -> build/lib/atlas_densities/app 2022-09-14T10:23:44,468 copying atlas_densities/app/__init__.py -> build/lib/atlas_densities/app 2022-09-14T10:23:44,471 copying atlas_densities/app/cell_densities.py -> build/lib/atlas_densities/app 2022-09-14T10:23:44,477 copying atlas_densities/app/combination.py -> build/lib/atlas_densities/app 2022-09-14T10:23:44,481 copying atlas_densities/app/cli.py -> build/lib/atlas_densities/app 2022-09-14T10:23:44,484 copying atlas_densities/app/utils.py -> build/lib/atlas_densities/app 2022-09-14T10:23:44,489 creating build/lib/atlas_densities/app/data 2022-09-14T10:23:44,491 copying atlas_densities/app/data/__init__.py -> build/lib/atlas_densities/app/data 2022-09-14T10:23:44,495 creating build/lib/tests/combination 2022-09-14T10:23:44,497 copying tests/combination/__init__.py -> build/lib/tests/combination 2022-09-14T10:23:44,500 copying tests/combination/test_annotations_combinator.py -> build/lib/tests/combination 2022-09-14T10:23:44,504 copying tests/combination/test_markers_combinator.py -> build/lib/tests/combination 2022-09-14T10:23:44,510 creating build/lib/tests/densities 2022-09-14T10:23:44,512 copying tests/densities/test_inhibitory_neuron_density_optimization.py -> build/lib/tests/densities 2022-09-14T10:23:44,516 copying tests/densities/test_refined_inhibitory_neuron_density.py -> build/lib/tests/densities 2022-09-14T10:23:44,521 copying tests/densities/test_cell_density.py -> build/lib/tests/densities 2022-09-14T10:23:44,525 copying tests/densities/test_optimization_initialization.py -> build/lib/tests/densities 2022-09-14T10:23:44,531 copying tests/densities/__init__.py -> build/lib/tests/densities 2022-09-14T10:23:44,533 copying tests/densities/test_mtype_densities_from_composition.py -> build/lib/tests/densities 2022-09-14T10:23:44,538 copying tests/densities/test_mtype_densities_from_profiles.py -> build/lib/tests/densities 2022-09-14T10:23:44,542 copying tests/densities/test_excel_reader.py -> build/lib/tests/densities 2022-09-14T10:23:44,547 copying tests/densities/test_cell_counts.py -> build/lib/tests/densities 2022-09-14T10:23:44,551 copying tests/densities/test_inhibitory_neuron_density.py -> build/lib/tests/densities 2022-09-14T10:23:44,555 copying tests/densities/test_inhibitory_neuron_densities_helper.py -> build/lib/tests/densities 2022-09-14T10:23:44,559 copying tests/densities/test_utils.py -> build/lib/tests/densities 2022-09-14T10:23:44,564 copying tests/densities/test_measurement_to_density.py -> build/lib/tests/densities 2022-09-14T10:23:44,569 copying tests/densities/test_fitting.py -> build/lib/tests/densities 2022-09-14T10:23:44,573 copying tests/densities/test_mtype_densities_from_map.py -> build/lib/tests/densities 2022-09-14T10:23:44,578 copying tests/densities/test_glia_densities.py -> build/lib/tests/densities 2022-09-14T10:23:44,583 creating build/lib/tests/app 2022-09-14T10:23:44,585 copying tests/app/__init__.py -> build/lib/tests/app 2022-09-14T10:23:44,589 copying tests/app/test_cell_densities.py -> build/lib/tests/app 2022-09-14T10:23:44,594 copying tests/app/test_mtype_densities.py -> build/lib/tests/app 2022-09-14T10:23:44,600 copying tests/app/test_combination.py -> build/lib/tests/app 2022-09-14T10:23:44,604 copying tests/app/test_refined_inhibitory_neuron_densities.py -> build/lib/tests/app 2022-09-14T10:23:44,608 running egg_info 2022-09-14T10:23:45,997 writing atlas_densities.egg-info/PKG-INFO 2022-09-14T10:23:46,600 writing dependency_links to atlas_densities.egg-info/dependency_links.txt 2022-09-14T10:23:48,405 writing entry points to atlas_densities.egg-info/entry_points.txt 2022-09-14T10:23:49,611 writing requirements to atlas_densities.egg-info/requires.txt 2022-09-14T10:23:50,214 writing top-level names to atlas_densities.egg-info/top_level.txt 2022-09-14T10:23:51,098 listing git files failed - pretending there aren't any 2022-09-14T10:23:51,119 reading manifest file 'atlas_densities.egg-info/SOURCES.txt' 2022-09-14T10:23:51,156 reading manifest template 'MANIFEST.in' 2022-09-14T10:23:51,216 adding license file 'LICENSE.txt' 2022-09-14T10:23:51,217 adding license file 'AUTHORS.txt' 2022-09-14T10:23:51,241 writing manifest file 'atlas_densities.egg-info/SOURCES.txt' 2022-09-14T10:23:51,248 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-09-14T10:23:51,249 ############################ 2022-09-14T10:23:51,250 # Package would be ignored # 2022-09-14T10:23:51,250 ############################ 2022-09-14T10:23:51,250 Python recognizes 'atlas_densities.app.data.markers' as an importable package, however it is 2022-09-14T10:23:51,251 included in the distribution as "data". 2022-09-14T10:23:51,251 This behavior is likely to change in future versions of setuptools (and 2022-09-14T10:23:51,251 therefore is considered deprecated). 2022-09-14T10:23:51,252 Please make sure that 'atlas_densities.app.data.markers' is included as a package by using 2022-09-14T10:23:51,252 setuptools' `packages` configuration field or the proper discovery methods. 2022-09-14T10:23:51,253 You can read more about "package discovery" and "data files" on setuptools 2022-09-14T10:23:51,253 documentation page. 2022-09-14T10:23:51,254 !! 2022-09-14T10:23:51,255 check.warn(importable) 2022-09-14T10:23:51,255 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-09-14T10:23:51,256 ############################ 2022-09-14T10:23:51,257 # Package would be ignored # 2022-09-14T10:23:51,257 ############################ 2022-09-14T10:23:51,257 Python recognizes 'atlas_densities.app.data.measurements' as an importable package, however it is 2022-09-14T10:23:51,257 included in the distribution as "data". 2022-09-14T10:23:51,258 This behavior is likely to change in future versions of setuptools (and 2022-09-14T10:23:51,258 therefore is considered deprecated). 2022-09-14T10:23:51,259 Please make sure that 'atlas_densities.app.data.measurements' is included as a package by using 2022-09-14T10:23:51,259 setuptools' `packages` configuration field or the proper discovery methods. 2022-09-14T10:23:51,260 You can read more about "package discovery" and "data files" on setuptools 2022-09-14T10:23:51,260 documentation page. 2022-09-14T10:23:51,261 !! 2022-09-14T10:23:51,261 check.warn(importable) 2022-09-14T10:23:51,262 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-09-14T10:23:51,263 ############################ 2022-09-14T10:23:51,263 # Package would be ignored # 2022-09-14T10:23:51,263 ############################ 2022-09-14T10:23:51,264 Python recognizes 'atlas_densities.app.data.metadata' as an importable package, however it is 2022-09-14T10:23:51,264 included in the distribution as "data". 2022-09-14T10:23:51,264 This behavior is likely to change in future versions of setuptools (and 2022-09-14T10:23:51,265 therefore is considered deprecated). 2022-09-14T10:23:51,265 Please make sure that 'atlas_densities.app.data.metadata' is included as a package by using 2022-09-14T10:23:51,265 setuptools' `packages` configuration field or the proper discovery methods. 2022-09-14T10:23:51,266 You can read more about "package discovery" and "data files" on setuptools 2022-09-14T10:23:51,266 documentation page. 2022-09-14T10:23:51,267 !! 2022-09-14T10:23:51,268 check.warn(importable) 2022-09-14T10:23:51,268 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-09-14T10:23:51,269 ############################ 2022-09-14T10:23:51,269 # Package would be ignored # 2022-09-14T10:23:51,269 ############################ 2022-09-14T10:23:51,270 Python recognizes 'atlas_densities.app.data.mtypes' as an importable package, however it is 2022-09-14T10:23:51,270 included in the distribution as "data". 2022-09-14T10:23:51,270 This behavior is likely to change in future versions of setuptools (and 2022-09-14T10:23:51,271 therefore is considered deprecated). 2022-09-14T10:23:51,271 Please make sure that 'atlas_densities.app.data.mtypes' is included as a package by using 2022-09-14T10:23:51,272 setuptools' `packages` configuration field or the proper discovery methods. 2022-09-14T10:23:51,272 You can read more about "package discovery" and "data files" on setuptools 2022-09-14T10:23:51,272 documentation page. 2022-09-14T10:23:51,273 !! 2022-09-14T10:23:51,274 check.warn(importable) 2022-09-14T10:23:51,275 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-09-14T10:23:51,276 ############################ 2022-09-14T10:23:51,276 # Package would be ignored # 2022-09-14T10:23:51,276 ############################ 2022-09-14T10:23:51,277 Python recognizes 'atlas_densities.app.data.mtypes.composition' as an importable package, however it is 2022-09-14T10:23:51,277 included in the distribution as "data". 2022-09-14T10:23:51,277 This behavior is likely to change in future versions of setuptools (and 2022-09-14T10:23:51,277 therefore is considered deprecated). 2022-09-14T10:23:51,278 Please make sure that 'atlas_densities.app.data.mtypes.composition' is included as a package by using 2022-09-14T10:23:51,278 setuptools' `packages` configuration field or the proper discovery methods. 2022-09-14T10:23:51,279 You can read more about "package discovery" and "data files" on setuptools 2022-09-14T10:23:51,279 documentation page. 2022-09-14T10:23:51,280 !! 2022-09-14T10:23:51,281 check.warn(importable) 2022-09-14T10:23:51,281 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-09-14T10:23:51,282 ############################ 2022-09-14T10:23:51,282 # Package would be ignored # 2022-09-14T10:23:51,282 ############################ 2022-09-14T10:23:51,283 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles' as an importable package, however it is 2022-09-14T10:23:51,283 included in the distribution as "data". 2022-09-14T10:23:51,283 This behavior is likely to change in future versions of setuptools (and 2022-09-14T10:23:51,283 therefore is considered deprecated). 2022-09-14T10:23:51,284 Please make sure that 'atlas_densities.app.data.mtypes.density_profiles' is included as a package by using 2022-09-14T10:23:51,284 setuptools' `packages` configuration field or the proper discovery methods. 2022-09-14T10:23:51,285 You can read more about "package discovery" and "data files" on setuptools 2022-09-14T10:23:51,285 documentation page. 2022-09-14T10:23:51,286 !! 2022-09-14T10:23:51,287 check.warn(importable) 2022-09-14T10:23:51,287 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-09-14T10:23:51,288 ############################ 2022-09-14T10:23:51,288 # Package would be ignored # 2022-09-14T10:23:51,288 ############################ 2022-09-14T10:23:51,289 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles.meta' as an importable package, however it is 2022-09-14T10:23:51,289 included in the distribution as "data". 2022-09-14T10:23:51,289 This behavior is likely to change in future versions of setuptools (and 2022-09-14T10:23:51,290 therefore is considered deprecated). 2022-09-14T10:23:51,290 Please make sure that 'atlas_densities.app.data.mtypes.density_profiles.meta' is included as a package by using 2022-09-14T10:23:51,291 setuptools' `packages` configuration field or the proper discovery methods. 2022-09-14T10:23:51,292 You can read more about "package discovery" and "data files" on setuptools 2022-09-14T10:23:51,292 documentation page. 2022-09-14T10:23:51,293 !! 2022-09-14T10:23:51,294 check.warn(importable) 2022-09-14T10:23:51,294 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-09-14T10:23:51,295 ############################ 2022-09-14T10:23:51,295 # Package would be ignored # 2022-09-14T10:23:51,295 ############################ 2022-09-14T10:23:51,296 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles.profiles' as an importable package, however it is 2022-09-14T10:23:51,296 included in the distribution as "data". 2022-09-14T10:23:51,296 This behavior is likely to change in future versions of setuptools (and 2022-09-14T10:23:51,297 therefore is considered deprecated). 2022-09-14T10:23:51,297 Please make sure that 'atlas_densities.app.data.mtypes.density_profiles.profiles' is included as a package by using 2022-09-14T10:23:51,297 setuptools' `packages` configuration field or the proper discovery methods. 2022-09-14T10:23:51,298 You can read more about "package discovery" and "data files" on setuptools 2022-09-14T10:23:51,298 documentation page. 2022-09-14T10:23:51,299 !! 2022-09-14T10:23:51,300 check.warn(importable) 2022-09-14T10:23:51,306 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-09-14T10:23:51,307 ############################ 2022-09-14T10:23:51,307 # Package would be ignored # 2022-09-14T10:23:51,311 ############################ 2022-09-14T10:23:51,312 Python recognizes 'atlas_densities.app.data.mtypes.probability_map' as an importable package, however it is 2022-09-14T10:23:51,312 included in the distribution as "data". 2022-09-14T10:23:51,313 This behavior is likely to change in future versions of setuptools (and 2022-09-14T10:23:51,313 therefore is considered deprecated). 2022-09-14T10:23:51,315 Please make sure that 'atlas_densities.app.data.mtypes.probability_map' is included as a package by using 2022-09-14T10:23:51,315 setuptools' `packages` configuration field or the proper discovery methods. 2022-09-14T10:23:51,316 You can read more about "package discovery" and "data files" on setuptools 2022-09-14T10:23:51,317 documentation page. 2022-09-14T10:23:51,318 !! 2022-09-14T10:23:51,319 check.warn(importable) 2022-09-14T10:23:51,319 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-09-14T10:23:51,320 ############################ 2022-09-14T10:23:51,322 # Package would be ignored # 2022-09-14T10:23:51,322 ############################ 2022-09-14T10:23:51,323 Python recognizes 'tests.densities.data.meta' as an importable package, however it is 2022-09-14T10:23:51,323 included in the distribution as "data". 2022-09-14T10:23:51,323 This behavior is likely to change in future versions of setuptools (and 2022-09-14T10:23:51,323 therefore is considered deprecated). 2022-09-14T10:23:51,324 Please make sure that 'tests.densities.data.meta' is included as a package by using 2022-09-14T10:23:51,325 setuptools' `packages` configuration field or the proper discovery methods. 2022-09-14T10:23:51,325 You can read more about "package discovery" and "data files" on setuptools 2022-09-14T10:23:51,326 documentation page. 2022-09-14T10:23:51,326 !! 2022-09-14T10:23:51,327 check.warn(importable) 2022-09-14T10:23:51,327 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-09-14T10:23:51,328 ############################ 2022-09-14T10:23:51,329 # Package would be ignored # 2022-09-14T10:23:51,329 ############################ 2022-09-14T10:23:51,329 Python recognizes 'tests.densities.data.mtypes' as an importable package, however it is 2022-09-14T10:23:51,330 included in the distribution as "data". 2022-09-14T10:23:51,330 This behavior is likely to change in future versions of setuptools (and 2022-09-14T10:23:51,330 therefore is considered deprecated). 2022-09-14T10:23:51,331 Please make sure that 'tests.densities.data.mtypes' is included as a package by using 2022-09-14T10:23:51,331 setuptools' `packages` configuration field or the proper discovery methods. 2022-09-14T10:23:51,332 You can read more about "package discovery" and "data files" on setuptools 2022-09-14T10:23:51,332 documentation page. 2022-09-14T10:23:51,333 !! 2022-09-14T10:23:51,334 check.warn(importable) 2022-09-14T10:23:51,334 copying tests/1.json -> build/lib/tests 2022-09-14T10:23:51,334 copying tests/markers_config.yaml -> build/lib/tests 2022-09-14T10:23:51,335 copying atlas_densities/app/data/1.json -> build/lib/atlas_densities/app/data 2022-09-14T10:23:51,381 creating build/lib/atlas_densities/app/data/markers 2022-09-14T10:23:51,383 copying atlas_densities/app/data/markers/README.rst -> build/lib/atlas_densities/app/data/markers 2022-09-14T10:23:51,388 copying atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml -> build/lib/atlas_densities/app/data/markers 2022-09-14T10:23:51,393 copying atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml -> build/lib/atlas_densities/app/data/markers 2022-09-14T10:23:51,397 copying atlas_densities/app/data/markers/realigned_slices_bbp.json -> build/lib/atlas_densities/app/data/markers 2022-09-14T10:23:51,402 copying atlas_densities/app/data/markers/realigned_slices_ccfv2.json -> build/lib/atlas_densities/app/data/markers 2022-09-14T10:23:51,407 creating build/lib/atlas_densities/app/data/measurements 2022-09-14T10:23:51,409 copying atlas_densities/app/data/measurements/._std_cells.json -> build/lib/atlas_densities/app/data/measurements 2022-09-14T10:23:51,414 copying atlas_densities/app/data/measurements/README.rst -> build/lib/atlas_densities/app/data/measurements 2022-09-14T10:23:51,419 copying atlas_densities/app/data/measurements/gaba_papers.xlsx -> build/lib/atlas_densities/app/data/measurements 2022-09-14T10:23:51,427 copying atlas_densities/app/data/measurements/homogenous_regions.csv -> build/lib/atlas_densities/app/data/measurements 2022-09-14T10:23:51,432 copying atlas_densities/app/data/measurements/measurements.csv -> build/lib/atlas_densities/app/data/measurements 2022-09-14T10:23:51,480 copying atlas_densities/app/data/measurements/mmc1.xlsx -> build/lib/atlas_densities/app/data/measurements 2022-09-14T10:23:51,501 copying atlas_densities/app/data/measurements/mmc3.xlsx -> build/lib/atlas_densities/app/data/measurements 2022-09-14T10:23:51,521 copying atlas_densities/app/data/measurements/non_density_measurements.csv -> build/lib/atlas_densities/app/data/measurements 2022-09-14T10:23:51,527 copying atlas_densities/app/data/measurements/std_cells.json -> build/lib/atlas_densities/app/data/measurements 2022-09-14T10:23:51,542 creating build/lib/atlas_densities/app/data/metadata 2022-09-14T10:23:51,544 copying atlas_densities/app/data/metadata/ca1_metadata.json -> build/lib/atlas_densities/app/data/metadata 2022-09-14T10:23:51,549 copying atlas_densities/app/data/metadata/isocortex_23_metadata.json -> build/lib/atlas_densities/app/data/metadata 2022-09-14T10:23:51,553 copying atlas_densities/app/data/metadata/isocortex_metadata.json -> build/lib/atlas_densities/app/data/metadata 2022-09-14T10:23:51,558 copying atlas_densities/app/data/metadata/metadata.json -> build/lib/atlas_densities/app/data/metadata 2022-09-14T10:23:51,562 copying atlas_densities/app/data/metadata/thalamus_metadata.json -> build/lib/atlas_densities/app/data/metadata 2022-09-14T10:23:51,566 creating build/lib/atlas_densities/app/data/mtypes 2022-09-14T10:23:51,568 copying atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml -> build/lib/atlas_densities/app/data/mtypes 2022-09-14T10:23:51,573 creating build/lib/atlas_densities/app/data/mtypes/composition 2022-09-14T10:23:51,575 copying atlas_densities/app/data/mtypes/composition/README.rst -> build/lib/atlas_densities/app/data/mtypes/composition 2022-09-14T10:23:51,580 copying atlas_densities/app/data/mtypes/composition/composition.yaml -> build/lib/atlas_densities/app/data/mtypes/composition 2022-09-14T10:23:51,586 copying atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv -> build/lib/atlas_densities/app/data/mtypes/composition 2022-09-14T10:23:51,590 creating build/lib/atlas_densities/app/data/mtypes/density_profiles 2022-09-14T10:23:51,592 copying atlas_densities/app/data/mtypes/density_profiles/README.rst -> build/lib/atlas_densities/app/data/mtypes/density_profiles 2022-09-14T10:23:51,597 creating build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2022-09-14T10:23:51,599 copying atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv -> build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2022-09-14T10:23:51,604 copying atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv -> build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2022-09-14T10:23:51,608 creating build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,610 copying atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,615 copying atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,620 copying atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,624 copying atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,629 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,633 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,638 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,643 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,648 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,652 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,657 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,662 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,666 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,671 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,676 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,681 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,685 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,690 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,695 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,700 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,705 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,709 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,714 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,719 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,723 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,728 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,732 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,736 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,741 copying atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,745 copying atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,749 copying atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,754 copying atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,759 copying atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:51,764 creating build/lib/atlas_densities/app/data/mtypes/probability_map 2022-09-14T10:23:51,766 copying atlas_densities/app/data/mtypes/probability_map/README.rst -> build/lib/atlas_densities/app/data/mtypes/probability_map 2022-09-14T10:23:51,771 copying atlas_densities/app/data/mtypes/probability_map/probability_map.csv -> build/lib/atlas_densities/app/data/mtypes/probability_map 2022-09-14T10:23:51,777 creating build/lib/tests/densities/data 2022-09-14T10:23:51,777 creating build/lib/tests/densities/data/meta 2022-09-14T10:23:51,779 copying tests/densities/data/meta/layers.tsv -> build/lib/tests/densities/data/meta 2022-09-14T10:23:51,783 copying tests/densities/data/meta/mapping.tsv -> build/lib/tests/densities/data/meta 2022-09-14T10:23:51,787 copying tests/densities/data/meta/mapping_exc_only.tsv -> build/lib/tests/densities/data/meta 2022-09-14T10:23:51,791 creating build/lib/tests/densities/data/mtypes 2022-09-14T10:23:51,792 copying tests/densities/data/mtypes/BP.dat -> build/lib/tests/densities/data/mtypes 2022-09-14T10:23:51,797 copying tests/densities/data/mtypes/L2_IPC.dat -> build/lib/tests/densities/data/mtypes 2022-09-14T10:23:51,801 copying tests/densities/data/mtypes/L2_TPC-A.dat -> build/lib/tests/densities/data/mtypes 2022-09-14T10:23:51,805 copying tests/densities/data/mtypes/L3_TPC-A.dat -> build/lib/tests/densities/data/mtypes 2022-09-14T10:23:51,808 copying tests/densities/data/mtypes/L3_TPC-B.dat -> build/lib/tests/densities/data/mtypes 2022-09-14T10:23:51,813 copying tests/densities/data/mtypes/mtype-taxonomy.tsv -> build/lib/tests/densities/data/mtypes 2022-09-14T10:23:52,534 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-09-14T10:23:52,535 setuptools.SetuptoolsDeprecationWarning, 2022-09-14T10:23:53,227 installing to build/bdist.linux-armv7l/wheel 2022-09-14T10:23:53,227 running install 2022-09-14T10:23:53,290 running install_lib 2022-09-14T10:23:53,983 creating build/bdist.linux-armv7l 2022-09-14T10:23:53,984 creating build/bdist.linux-armv7l/wheel 2022-09-14T10:23:53,987 creating build/bdist.linux-armv7l/wheel/atlas_densities 2022-09-14T10:23:53,989 copying build/lib/atlas_densities/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2022-09-14T10:23:53,995 creating build/bdist.linux-armv7l/wheel/atlas_densities/combination 2022-09-14T10:23:53,996 copying build/lib/atlas_densities/combination/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2022-09-14T10:23:53,999 copying build/lib/atlas_densities/combination/markers_combinator.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2022-09-14T10:23:54,003 copying build/lib/atlas_densities/combination/annotations_combinator.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2022-09-14T10:23:54,009 creating build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-09-14T10:23:54,011 copying build/lib/atlas_densities/densities/mtype_densities_from_profiles.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-09-14T10:23:54,017 copying build/lib/atlas_densities/densities/fitting.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-09-14T10:23:54,023 copying build/lib/atlas_densities/densities/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-09-14T10:23:54,026 copying build/lib/atlas_densities/densities/glia_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-09-14T10:23:54,030 copying build/lib/atlas_densities/densities/inhibitory_neuron_densities_optimization.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-09-14T10:23:54,036 copying build/lib/atlas_densities/densities/cell_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-09-14T10:23:54,041 copying build/lib/atlas_densities/densities/inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-09-14T10:23:54,046 copying build/lib/atlas_densities/densities/mtype_densities_from_map.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-09-14T10:23:54,050 copying build/lib/atlas_densities/densities/excel_reader.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-09-14T10:23:54,056 copying build/lib/atlas_densities/densities/cell_counts.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-09-14T10:23:54,060 copying build/lib/atlas_densities/densities/inhibitory_neuron_densities_helper.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-09-14T10:23:54,065 copying build/lib/atlas_densities/densities/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-09-14T10:23:54,070 copying build/lib/atlas_densities/densities/measurement_to_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-09-14T10:23:54,075 copying build/lib/atlas_densities/densities/mtype_densities_from_composition.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-09-14T10:23:54,078 copying build/lib/atlas_densities/densities/refined_inhibitory_neuron_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2022-09-14T10:23:54,083 copying build/lib/atlas_densities/exceptions.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2022-09-14T10:23:54,088 creating build/bdist.linux-armv7l/wheel/atlas_densities/app 2022-09-14T10:23:54,089 copying build/lib/atlas_densities/app/mtype_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2022-09-14T10:23:54,095 copying build/lib/atlas_densities/app/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2022-09-14T10:23:54,098 copying build/lib/atlas_densities/app/cell_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2022-09-14T10:23:54,104 copying build/lib/atlas_densities/app/combination.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2022-09-14T10:23:54,109 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2022-09-14T10:23:54,110 copying build/lib/atlas_densities/app/data/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2022-09-14T10:23:54,115 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-09-14T10:23:54,116 copying build/lib/atlas_densities/app/data/measurements/gaba_papers.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-09-14T10:23:54,124 copying build/lib/atlas_densities/app/data/measurements/homogenous_regions.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-09-14T10:23:54,128 copying build/lib/atlas_densities/app/data/measurements/mmc1.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-09-14T10:23:54,149 copying build/lib/atlas_densities/app/data/measurements/._std_cells.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-09-14T10:23:54,152 copying build/lib/atlas_densities/app/data/measurements/non_density_measurements.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-09-14T10:23:54,157 copying build/lib/atlas_densities/app/data/measurements/mmc3.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-09-14T10:23:54,174 copying build/lib/atlas_densities/app/data/measurements/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-09-14T10:23:54,178 copying build/lib/atlas_densities/app/data/measurements/measurements.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-09-14T10:23:54,225 copying build/lib/atlas_densities/app/data/measurements/std_cells.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2022-09-14T10:23:54,239 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2022-09-14T10:23:54,240 copying build/lib/atlas_densities/app/data/metadata/thalamus_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2022-09-14T10:23:54,244 copying build/lib/atlas_densities/app/data/metadata/metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2022-09-14T10:23:54,247 copying build/lib/atlas_densities/app/data/metadata/isocortex_23_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2022-09-14T10:23:54,250 copying build/lib/atlas_densities/app/data/metadata/isocortex_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2022-09-14T10:23:54,253 copying build/lib/atlas_densities/app/data/metadata/ca1_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2022-09-14T10:23:54,257 copying build/lib/atlas_densities/app/data/1.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2022-09-14T10:23:54,296 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2022-09-14T10:23:54,297 copying build/lib/atlas_densities/app/data/markers/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2022-09-14T10:23:54,301 copying build/lib/atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2022-09-14T10:23:54,304 copying build/lib/atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2022-09-14T10:23:54,308 copying build/lib/atlas_densities/app/data/markers/realigned_slices_bbp.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2022-09-14T10:23:54,311 copying build/lib/atlas_densities/app/data/markers/realigned_slices_ccfv2.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2022-09-14T10:23:54,316 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2022-09-14T10:23:54,317 copying build/lib/atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2022-09-14T10:23:54,322 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2022-09-14T10:23:54,323 copying build/lib/atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2022-09-14T10:23:54,327 copying build/lib/atlas_densities/app/data/mtypes/composition/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2022-09-14T10:23:54,330 copying build/lib/atlas_densities/app/data/mtypes/composition/composition.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2022-09-14T10:23:54,336 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2022-09-14T10:23:54,338 copying build/lib/atlas_densities/app/data/mtypes/probability_map/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2022-09-14T10:23:54,342 copying build/lib/atlas_densities/app/data/mtypes/probability_map/probability_map.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2022-09-14T10:23:54,347 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles 2022-09-14T10:23:54,350 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2022-09-14T10:23:54,351 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2022-09-14T10:23:54,355 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2022-09-14T10:23:54,358 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles 2022-09-14T10:23:54,364 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,366 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,370 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,374 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,378 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,382 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,386 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,391 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,395 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,399 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,403 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,407 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,411 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,414 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,418 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,421 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,425 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,428 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,432 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,436 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,439 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,443 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,446 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,450 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,453 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,457 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,460 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,464 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,467 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,471 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,474 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,478 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,481 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,485 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2022-09-14T10:23:54,488 copying build/lib/atlas_densities/app/cli.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2022-09-14T10:23:54,492 copying build/lib/atlas_densities/app/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2022-09-14T10:23:54,495 copying build/lib/atlas_densities/version.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2022-09-14T10:23:54,498 copying build/lib/atlas_densities/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2022-09-14T10:23:54,504 creating build/bdist.linux-armv7l/wheel/tests 2022-09-14T10:23:54,506 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2022-09-14T10:23:54,510 creating build/bdist.linux-armv7l/wheel/tests/combination 2022-09-14T10:23:54,511 copying build/lib/tests/combination/__init__.py -> build/bdist.linux-armv7l/wheel/tests/combination 2022-09-14T10:23:54,514 copying build/lib/tests/combination/test_annotations_combinator.py -> build/bdist.linux-armv7l/wheel/tests/combination 2022-09-14T10:23:54,519 copying build/lib/tests/combination/test_markers_combinator.py -> build/bdist.linux-armv7l/wheel/tests/combination 2022-09-14T10:23:54,522 copying build/lib/tests/mocking_tools.py -> build/bdist.linux-armv7l/wheel/tests 2022-09-14T10:23:54,527 creating build/bdist.linux-armv7l/wheel/tests/densities 2022-09-14T10:23:54,529 copying build/lib/tests/densities/test_inhibitory_neuron_density_optimization.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-09-14T10:23:54,534 copying build/lib/tests/densities/test_refined_inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-09-14T10:23:54,539 copying build/lib/tests/densities/test_cell_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-09-14T10:23:54,543 copying build/lib/tests/densities/test_optimization_initialization.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-09-14T10:23:54,548 copying build/lib/tests/densities/__init__.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-09-14T10:23:54,551 copying build/lib/tests/densities/test_mtype_densities_from_composition.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-09-14T10:23:54,555 copying build/lib/tests/densities/test_mtype_densities_from_profiles.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-09-14T10:23:54,559 copying build/lib/tests/densities/test_excel_reader.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-09-14T10:23:54,563 copying build/lib/tests/densities/test_cell_counts.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-09-14T10:23:54,567 copying build/lib/tests/densities/test_inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-09-14T10:23:54,571 copying build/lib/tests/densities/test_inhibitory_neuron_densities_helper.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-09-14T10:23:54,575 copying build/lib/tests/densities/test_utils.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-09-14T10:23:54,580 copying build/lib/tests/densities/test_measurement_to_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-09-14T10:23:54,585 creating build/bdist.linux-armv7l/wheel/tests/densities/data 2022-09-14T10:23:54,588 creating build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2022-09-14T10:23:54,590 copying build/lib/tests/densities/data/meta/layers.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2022-09-14T10:23:54,593 copying build/lib/tests/densities/data/meta/mapping_exc_only.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2022-09-14T10:23:54,597 copying build/lib/tests/densities/data/meta/mapping.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2022-09-14T10:23:54,601 creating build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2022-09-14T10:23:54,603 copying build/lib/tests/densities/data/mtypes/L2_TPC-A.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2022-09-14T10:23:54,606 copying build/lib/tests/densities/data/mtypes/L3_TPC-B.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2022-09-14T10:23:54,610 copying build/lib/tests/densities/data/mtypes/L3_TPC-A.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2022-09-14T10:23:54,613 copying build/lib/tests/densities/data/mtypes/BP.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2022-09-14T10:23:54,617 copying build/lib/tests/densities/data/mtypes/L2_IPC.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2022-09-14T10:23:54,620 copying build/lib/tests/densities/data/mtypes/mtype-taxonomy.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2022-09-14T10:23:54,623 copying build/lib/tests/densities/test_fitting.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-09-14T10:23:54,628 copying build/lib/tests/densities/test_mtype_densities_from_map.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-09-14T10:23:54,632 copying build/lib/tests/densities/test_glia_densities.py -> build/bdist.linux-armv7l/wheel/tests/densities 2022-09-14T10:23:54,638 creating build/bdist.linux-armv7l/wheel/tests/app 2022-09-14T10:23:54,639 copying build/lib/tests/app/__init__.py -> build/bdist.linux-armv7l/wheel/tests/app 2022-09-14T10:23:54,642 copying build/lib/tests/app/test_cell_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2022-09-14T10:23:54,647 copying build/lib/tests/app/test_mtype_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2022-09-14T10:23:54,652 copying build/lib/tests/app/test_combination.py -> build/bdist.linux-armv7l/wheel/tests/app 2022-09-14T10:23:54,655 copying build/lib/tests/app/test_refined_inhibitory_neuron_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2022-09-14T10:23:54,659 copying build/lib/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/tests 2022-09-14T10:23:54,663 copying build/lib/tests/1.json -> build/bdist.linux-armv7l/wheel/tests 2022-09-14T10:23:54,696 copying build/lib/tests/markers_config.yaml -> build/bdist.linux-armv7l/wheel/tests 2022-09-14T10:23:54,698 running install_egg_info 2022-09-14T10:23:55,390 Copying atlas_densities.egg-info to build/bdist.linux-armv7l/wheel/atlas_densities-0.1.2-py3.7.egg-info 2022-09-14T10:23:55,416 running install_scripts 2022-09-14T10:23:55,605 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2022-09-14T10:23:55,607 adding license file "AUTHORS.txt" (matched pattern "AUTHORS*") 2022-09-14T10:23:55,618 creating build/bdist.linux-armv7l/wheel/atlas_densities-0.1.2.dist-info/WHEEL 2022-09-14T10:23:55,623 creating '/tmp/pip-wheel-nx2nzlcd/atlas_densities-0.1.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-09-14T10:23:55,628 adding 'atlas_densities/__init__.py' 2022-09-14T10:23:55,630 adding 'atlas_densities/exceptions.py' 2022-09-14T10:23:55,634 adding 'atlas_densities/utils.py' 2022-09-14T10:23:55,636 adding 'atlas_densities/version.py' 2022-09-14T10:23:55,640 adding 'atlas_densities/app/__init__.py' 2022-09-14T10:23:55,650 adding 'atlas_densities/app/cell_densities.py' 2022-09-14T10:23:55,653 adding 'atlas_densities/app/cli.py' 2022-09-14T10:23:55,657 adding 'atlas_densities/app/combination.py' 2022-09-14T10:23:55,663 adding 'atlas_densities/app/mtype_densities.py' 2022-09-14T10:23:55,665 adding 'atlas_densities/app/utils.py' 2022-09-14T10:23:55,737 adding 'atlas_densities/app/data/1.json' 2022-09-14T10:23:55,752 adding 'atlas_densities/app/data/__init__.py' 2022-09-14T10:23:55,756 adding 'atlas_densities/app/data/markers/README.rst' 2022-09-14T10:23:55,759 adding 'atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml' 2022-09-14T10:23:55,761 adding 'atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml' 2022-09-14T10:23:55,763 adding 'atlas_densities/app/data/markers/realigned_slices_bbp.json' 2022-09-14T10:23:55,766 adding 'atlas_densities/app/data/markers/realigned_slices_ccfv2.json' 2022-09-14T10:23:55,770 adding 'atlas_densities/app/data/measurements/._std_cells.json' 2022-09-14T10:23:55,773 adding 'atlas_densities/app/data/measurements/README.rst' 2022-09-14T10:23:55,788 adding 'atlas_densities/app/data/measurements/gaba_papers.xlsx' 2022-09-14T10:23:55,791 adding 'atlas_densities/app/data/measurements/homogenous_regions.csv' 2022-09-14T10:23:55,893 adding 'atlas_densities/app/data/measurements/measurements.csv' 2022-09-14T10:23:56,014 adding 'atlas_densities/app/data/measurements/mmc1.xlsx' 2022-09-14T10:23:56,110 adding 'atlas_densities/app/data/measurements/mmc3.xlsx' 2022-09-14T10:23:56,119 adding 'atlas_densities/app/data/measurements/non_density_measurements.csv' 2022-09-14T10:23:56,151 adding 'atlas_densities/app/data/measurements/std_cells.json' 2022-09-14T10:23:56,159 adding 'atlas_densities/app/data/metadata/ca1_metadata.json' 2022-09-14T10:23:56,161 adding 'atlas_densities/app/data/metadata/isocortex_23_metadata.json' 2022-09-14T10:23:56,163 adding 'atlas_densities/app/data/metadata/isocortex_metadata.json' 2022-09-14T10:23:56,166 adding 'atlas_densities/app/data/metadata/metadata.json' 2022-09-14T10:23:56,168 adding 'atlas_densities/app/data/metadata/thalamus_metadata.json' 2022-09-14T10:23:56,171 adding 'atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml' 2022-09-14T10:23:56,175 adding 'atlas_densities/app/data/mtypes/composition/README.rst' 2022-09-14T10:23:56,178 adding 'atlas_densities/app/data/mtypes/composition/composition.yaml' 2022-09-14T10:23:56,180 adding 'atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv' 2022-09-14T10:23:56,184 adding 'atlas_densities/app/data/mtypes/density_profiles/README.rst' 2022-09-14T10:23:56,187 adding 'atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv' 2022-09-14T10:23:56,190 adding 'atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv' 2022-09-14T10:23:56,194 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat' 2022-09-14T10:23:56,197 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat' 2022-09-14T10:23:56,199 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat' 2022-09-14T10:23:56,201 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat' 2022-09-14T10:23:56,203 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat' 2022-09-14T10:23:56,205 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat' 2022-09-14T10:23:56,208 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat' 2022-09-14T10:23:56,210 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat' 2022-09-14T10:23:56,212 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat' 2022-09-14T10:23:56,214 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat' 2022-09-14T10:23:56,216 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat' 2022-09-14T10:23:56,218 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat' 2022-09-14T10:23:56,220 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat' 2022-09-14T10:23:56,222 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat' 2022-09-14T10:23:56,224 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat' 2022-09-14T10:23:56,227 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat' 2022-09-14T10:23:56,229 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat' 2022-09-14T10:23:56,231 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat' 2022-09-14T10:23:56,233 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat' 2022-09-14T10:23:56,235 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat' 2022-09-14T10:23:56,237 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat' 2022-09-14T10:23:56,239 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat' 2022-09-14T10:23:56,241 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat' 2022-09-14T10:23:56,243 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat' 2022-09-14T10:23:56,246 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat' 2022-09-14T10:23:56,248 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat' 2022-09-14T10:23:56,250 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat' 2022-09-14T10:23:56,252 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat' 2022-09-14T10:23:56,254 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat' 2022-09-14T10:23:56,257 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat' 2022-09-14T10:23:56,259 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat' 2022-09-14T10:23:56,261 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat' 2022-09-14T10:23:56,263 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat' 2022-09-14T10:23:56,267 adding 'atlas_densities/app/data/mtypes/probability_map/README.rst' 2022-09-14T10:23:56,272 adding 'atlas_densities/app/data/mtypes/probability_map/probability_map.csv' 2022-09-14T10:23:56,275 adding 'atlas_densities/combination/__init__.py' 2022-09-14T10:23:56,278 adding 'atlas_densities/combination/annotations_combinator.py' 2022-09-14T10:23:56,282 adding 'atlas_densities/combination/markers_combinator.py' 2022-09-14T10:23:56,285 adding 'atlas_densities/densities/__init__.py' 2022-09-14T10:23:56,289 adding 'atlas_densities/densities/cell_counts.py' 2022-09-14T10:23:56,292 adding 'atlas_densities/densities/cell_density.py' 2022-09-14T10:23:56,300 adding 'atlas_densities/densities/excel_reader.py' 2022-09-14T10:23:56,307 adding 'atlas_densities/densities/fitting.py' 2022-09-14T10:23:56,311 adding 'atlas_densities/densities/glia_densities.py' 2022-09-14T10:23:56,315 adding 'atlas_densities/densities/inhibitory_neuron_densities_helper.py' 2022-09-14T10:23:56,324 adding 'atlas_densities/densities/inhibitory_neuron_densities_optimization.py' 2022-09-14T10:23:56,329 adding 'atlas_densities/densities/inhibitory_neuron_density.py' 2022-09-14T10:23:56,333 adding 'atlas_densities/densities/measurement_to_density.py' 2022-09-14T10:23:56,336 adding 'atlas_densities/densities/mtype_densities_from_composition.py' 2022-09-14T10:23:56,340 adding 'atlas_densities/densities/mtype_densities_from_map.py' 2022-09-14T10:23:56,347 adding 'atlas_densities/densities/mtype_densities_from_profiles.py' 2022-09-14T10:23:56,353 adding 'atlas_densities/densities/refined_inhibitory_neuron_densities.py' 2022-09-14T10:23:56,361 adding 'atlas_densities/densities/utils.py' 2022-09-14T10:23:56,436 adding 'tests/1.json' 2022-09-14T10:23:56,451 adding 'tests/__init__.py' 2022-09-14T10:23:56,453 adding 'tests/markers_config.yaml' 2022-09-14T10:23:56,456 adding 'tests/mocking_tools.py' 2022-09-14T10:23:56,459 adding 'tests/test_utils.py' 2022-09-14T10:23:56,462 adding 'tests/app/__init__.py' 2022-09-14T10:23:56,466 adding 'tests/app/test_cell_densities.py' 2022-09-14T10:23:56,469 adding 'tests/app/test_combination.py' 2022-09-14T10:23:56,473 adding 'tests/app/test_mtype_densities.py' 2022-09-14T10:23:56,477 adding 'tests/app/test_refined_inhibitory_neuron_densities.py' 2022-09-14T10:23:56,480 adding 'tests/combination/__init__.py' 2022-09-14T10:23:56,483 adding 'tests/combination/test_annotations_combinator.py' 2022-09-14T10:23:56,487 adding 'tests/combination/test_markers_combinator.py' 2022-09-14T10:23:56,491 adding 'tests/densities/__init__.py' 2022-09-14T10:23:56,493 adding 'tests/densities/test_cell_counts.py' 2022-09-14T10:23:56,496 adding 'tests/densities/test_cell_density.py' 2022-09-14T10:23:56,500 adding 'tests/densities/test_excel_reader.py' 2022-09-14T10:23:56,505 adding 'tests/densities/test_fitting.py' 2022-09-14T10:23:56,508 adding 'tests/densities/test_glia_densities.py' 2022-09-14T10:23:56,511 adding 'tests/densities/test_inhibitory_neuron_densities_helper.py' 2022-09-14T10:23:56,514 adding 'tests/densities/test_inhibitory_neuron_density.py' 2022-09-14T10:23:56,517 adding 'tests/densities/test_inhibitory_neuron_density_optimization.py' 2022-09-14T10:23:56,521 adding 'tests/densities/test_measurement_to_density.py' 2022-09-14T10:23:56,524 adding 'tests/densities/test_mtype_densities_from_composition.py' 2022-09-14T10:23:56,527 adding 'tests/densities/test_mtype_densities_from_map.py' 2022-09-14T10:23:56,531 adding 'tests/densities/test_mtype_densities_from_profiles.py' 2022-09-14T10:23:56,535 adding 'tests/densities/test_optimization_initialization.py' 2022-09-14T10:23:56,544 adding 'tests/densities/test_refined_inhibitory_neuron_density.py' 2022-09-14T10:23:56,549 adding 'tests/densities/test_utils.py' 2022-09-14T10:23:56,553 adding 'tests/densities/data/meta/layers.tsv' 2022-09-14T10:23:56,555 adding 'tests/densities/data/meta/mapping.tsv' 2022-09-14T10:23:56,557 adding 'tests/densities/data/meta/mapping_exc_only.tsv' 2022-09-14T10:23:56,560 adding 'tests/densities/data/mtypes/BP.dat' 2022-09-14T10:23:56,562 adding 'tests/densities/data/mtypes/L2_IPC.dat' 2022-09-14T10:23:56,564 adding 'tests/densities/data/mtypes/L2_TPC-A.dat' 2022-09-14T10:23:56,567 adding 'tests/densities/data/mtypes/L3_TPC-A.dat' 2022-09-14T10:23:56,569 adding 'tests/densities/data/mtypes/L3_TPC-B.dat' 2022-09-14T10:23:56,571 adding 'tests/densities/data/mtypes/mtype-taxonomy.tsv' 2022-09-14T10:23:56,573 adding 'atlas_densities-0.1.2.dist-info/AUTHORS.txt' 2022-09-14T10:23:56,577 adding 'atlas_densities-0.1.2.dist-info/LICENSE.txt' 2022-09-14T10:23:56,582 adding 'atlas_densities-0.1.2.dist-info/METADATA' 2022-09-14T10:23:56,584 adding 'atlas_densities-0.1.2.dist-info/WHEEL' 2022-09-14T10:23:56,586 adding 'atlas_densities-0.1.2.dist-info/entry_points.txt' 2022-09-14T10:23:56,587 adding 'atlas_densities-0.1.2.dist-info/top_level.txt' 2022-09-14T10:23:56,593 adding 'atlas_densities-0.1.2.dist-info/RECORD' 2022-09-14T10:23:56,638 removing build/bdist.linux-armv7l/wheel 2022-09-14T10:23:56,994 Building wheel for atlas-densities (setup.py): finished with status 'done' 2022-09-14T10:23:57,032 Created wheel for atlas-densities: filename=atlas_densities-0.1.2-py3-none-any.whl size=1049143 sha256=8525ddeb5820cac5646a8e64609c379dfeda0ef3c1e0fddf611b904fe6717f9a 2022-09-14T10:23:57,034 Stored in directory: /tmp/pip-ephem-wheel-cache-jf9aubx2/wheels/92/3d/50/c6df06027bb6b7447187cedd49308160290d2c5b4139bd1148 2022-09-14T10:23:57,074 Successfully built atlas-densities 2022-09-14T10:23:57,158 Removed build tracker: '/tmp/pip-build-tracker-rwfn5bcp'