2022-09-20T19:51:07,720 Created temporary directory: /tmp/pip-ephem-wheel-cache-2k2m0rvq 2022-09-20T19:51:07,726 Created temporary directory: /tmp/pip-build-tracker-nw87yhvm 2022-09-20T19:51:07,726 Initialized build tracking at /tmp/pip-build-tracker-nw87yhvm 2022-09-20T19:51:07,727 Created build tracker: /tmp/pip-build-tracker-nw87yhvm 2022-09-20T19:51:07,727 Entered build tracker: /tmp/pip-build-tracker-nw87yhvm 2022-09-20T19:51:07,728 Created temporary directory: /tmp/pip-wheel-_6bxn5gf 2022-09-20T19:51:07,802 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-09-20T19:51:07,810 2 location(s) to search for versions of indelpost: 2022-09-20T19:51:07,810 * https://pypi.org/simple/indelpost/ 2022-09-20T19:51:07,810 * https://www.piwheels.org/simple/indelpost/ 2022-09-20T19:51:07,812 Fetching project page and analyzing links: https://pypi.org/simple/indelpost/ 2022-09-20T19:51:07,812 Getting page https://pypi.org/simple/indelpost/ 2022-09-20T19:51:07,816 Found index url https://pypi.org/simple 2022-09-20T19:51:07,951 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/2c/1d/2aaf490785fed09605d1194a93f0d4c6693e0700fe2fcd9185b1aac27ef2/indelpost-0.0.1-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=22dd2ce3f806b04ebc5c5587736e8ee360d798fdf01d28711357185cf1703961 (from https://pypi.org/simple/indelpost/) 2022-09-20T19:51:07,951 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/54/c1/a67da73389badb8221981f0fb0fbbbfdb7342ab8f85f905d6698c6347f6b/indelpost-0.0.2-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=90d86337c0008370f0c2752bfd1dcf1dda8bb34475cac842ed9cbb3dc0073027 (from https://pypi.org/simple/indelpost/) 2022-09-20T19:51:07,952 Found link https://files.pythonhosted.org/packages/de/7b/8b8e90a4883daa231b77b3b20d07430734622d3dabe47f8d341f6b9ebb49/indelpost-0.0.2.tar.gz#sha256=d2cdebe02749d55eff6a4e0fbc455ac90d8e9ddc730ff5baa14b6743931797d6 (from https://pypi.org/simple/indelpost/), version: 0.0.2 2022-09-20T19:51:07,953 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/dc/d5/5e20c3069e99a36caf23bbf9ac6e0f654a23178bb7346541676872fa9bbe/indelpost-0.0.3-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=d401a2411fd0f40975c5d11ddaa1100eeb04e60f44de5fb703c8b261c5dd14b0 (from https://pypi.org/simple/indelpost/) 2022-09-20T19:51:07,953 Found link https://files.pythonhosted.org/packages/8d/6a/e12e7e15eeb48b35ae38b9382b0e3b8853fe62c2147f13c7152c1285efe0/indelpost-0.0.3.tar.gz#sha256=15b1108f2a9382c2e0133d585e96e4f3a109de9c14ec91df7910637bb882e8cf (from https://pypi.org/simple/indelpost/), version: 0.0.3 2022-09-20T19:51:07,954 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/bf/82/58a1ee8cb0385c502afceb21d718179cbe56dd2318656de1c11f1d16af8b/indelpost-0.0.4-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=10782ed395a864d0e4d9d7bdb6b047e0d919eb6eb19b2eb38536c083aee6010e (from https://pypi.org/simple/indelpost/) 2022-09-20T19:51:07,955 Found link https://files.pythonhosted.org/packages/ef/04/6d459daa1e4c992bc65ee1bedd624a7c061e7026df01e2f835591a205a54/indelpost-0.0.4.tar.gz#sha256=81a6d7220973f36e1ed0b7f45a9602780b153e2c82769e77faab517ac5874095 (from https://pypi.org/simple/indelpost/), version: 0.0.4 2022-09-20T19:51:07,955 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/fc/60/d2dc04e1503d76a934265af72306fe6883bbeab466e30e4104e04565da6f/indelpost-0.0.5-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=36390346ce23d74882e6017c14789aa661b165579dc63442b62d08b84c219ca5 (from https://pypi.org/simple/indelpost/) 2022-09-20T19:51:07,956 Found link https://files.pythonhosted.org/packages/59/c4/b639f75fe326c6712d462f6154ea6047c4774a661f00c2551fff984db194/indelpost-0.0.5.tar.gz#sha256=43d39835821c9564eed9148c529fd9833db6b3042cf259ffc69398e25cd86768 (from https://pypi.org/simple/indelpost/), version: 0.0.5 2022-09-20T19:51:07,957 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/f1/6e/26ec6199f8df542adc339cf3caebfdcfd5cdf438591aa6e7b3881b2d9682/indelpost-0.0.6-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=29b3d6634007ef21c4c88f72e1ea5594e9e7b1d04f084dfdcbc70b749394aed6 (from https://pypi.org/simple/indelpost/) 2022-09-20T19:51:07,957 Found link https://files.pythonhosted.org/packages/82/50/d5d04f27a9317f5c24850b2388713c240a6c07fdb5f9a3cbc5b3aef6032c/indelpost-0.0.6.tar.gz#sha256=ea9a534f8f0a7dcec35a004d1f42632fe245d28d74914f226eeab262dbf84410 (from https://pypi.org/simple/indelpost/), version: 0.0.6 2022-09-20T19:51:07,958 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/ea/da/03d68b7bb51d84b8c88303fc6c7554db09bb3ec1fc6e01db8445b936bd6c/indelpost-0.0.7-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=aa1931e5f50c8d9b66f8dc512e71d923f2eef1c4c86d5c672e4d16d22334f66d (from https://pypi.org/simple/indelpost/) 2022-09-20T19:51:07,959 Found link https://files.pythonhosted.org/packages/97/55/92a64a3f1d8bbe3b3d326f32aeb87516e3c461ce8f44a4d09cc10de90077/indelpost-0.0.7.tar.gz#sha256=bb16d11fe858c0a3d4c8e6046961657622a4c7eaa0559bb62629eeef81a1b8f9 (from https://pypi.org/simple/indelpost/), version: 0.0.7 2022-09-20T19:51:07,959 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/33/67/ae5323d7d9c609a60fb4d425b0d8ba5299453b63b9125f35e3743636bf12/indelpost-0.1.0-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=f42eec0a7acc7840c14d9d3ee5c011bf1036899673ed7905ca919bfd134bd7fb (from https://pypi.org/simple/indelpost/) 2022-09-20T19:51:07,960 Found link https://files.pythonhosted.org/packages/ad/13/3367cfe66b9dee3034ca7f4188d61a55e7cf1817558dd1322313ea693384/indelpost-0.1.0.tar.gz#sha256=513a086552e176415620c57b048110028b926d18ae225ff3b5b6a2a826224f52 (from https://pypi.org/simple/indelpost/), version: 0.1.0 2022-09-20T19:51:07,960 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/c7/09/70c352d9d6f3bcdc410810d35d44cf66493f66c07ac996c07da53d5a6375/indelpost-0.1.2-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=b9bde1f02a9c2d379aca928fdb302d39d668205e881dca8bd3568126656cc14a (from https://pypi.org/simple/indelpost/) 2022-09-20T19:51:07,961 Found link https://files.pythonhosted.org/packages/28/7f/62eb40e0bdf79cc0b56bd12c4fa5598e13bbf140f44080c842d5284acc6f/indelpost-0.1.2.tar.gz#sha256=b2572871b17524491d11c82512c891c8ced26d7d4a04d5d41cf03f115c447426 (from https://pypi.org/simple/indelpost/), version: 0.1.2 2022-09-20T19:51:07,962 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/7f/a2/1341f6e0b449d1fa03df8b323c79c236ec134ed4b98808fd0e9b64083394/indelpost-0.1.3-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=fe074207ed3cfb7227e4c3eb7248ed0e790e9a6a6906dd93b48aecedeed88b6f (from https://pypi.org/simple/indelpost/) 2022-09-20T19:51:07,962 Found link https://files.pythonhosted.org/packages/bf/c0/fa6d273124ec3d739322db2f82410b21cfa06961e8ad74a75b4049780489/indelpost-0.1.3.tar.gz#sha256=269bce4bf476bf05c5ab3c2e785932ae4ff75524ad88215e1676ada179aa85c9 (from https://pypi.org/simple/indelpost/), version: 0.1.3 2022-09-20T19:51:07,963 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/84/b8/2960198caddb27814e86ee54022a85834c9315e08250df8210108e608832/indelpost-0.1.4-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=3d8ea641a270815ff18c4a86b00ff00489e1b1cdaced1ca61ca9cae797c4aeac (from https://pypi.org/simple/indelpost/) 2022-09-20T19:51:07,963 Found link https://files.pythonhosted.org/packages/8b/94/e98ddc3e8f24f3a3ac5f5ef94d4f2db0346e0a14e5cdbbdd3e1dd4a01e98/indelpost-0.1.4.tar.gz#sha256=647e20e4b777967edb981e06b6b477000112169c0a0cac15243c91869852eaf8 (from https://pypi.org/simple/indelpost/), version: 0.1.4 2022-09-20T19:51:07,964 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/5b/ad/d974f31584f0e4fede49aa915151215142af3c2a96be0169464b2d0b0948/indelpost-0.1.5-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=511b753d15748e6648d223112afddeacc040308f9bbe932e67c707c3f95ebafc (from https://pypi.org/simple/indelpost/) 2022-09-20T19:51:07,965 Found link https://files.pythonhosted.org/packages/1f/31/fa53ce469a6aea3029caa39b715d7eec5378b466038591b954e0f356e907/indelpost-0.1.5.tar.gz#sha256=546896754e075f0abb5bcea2d5e23039c7b3de265178a5c632955f7c53ec8a38 (from https://pypi.org/simple/indelpost/), version: 0.1.5 2022-09-20T19:51:07,965 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/46/f9/706bf8cae759e72d9da70746ef37ea6b72b746786582fc16aafe0a140d68/indelpost-0.1.6-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=e60f38ca5b74b4098685dbdfb338f4e4186ff694fd5962c3449e2d093c600c09 (from https://pypi.org/simple/indelpost/) 2022-09-20T19:51:07,966 Found link https://files.pythonhosted.org/packages/81/75/62103326be8bd02fc0f7d11a3f20693fcb106f39e8c0c09204ec662d9c96/indelpost-0.1.6.tar.gz#sha256=ee81455d5cc6d8bb3c82e4c4ff14e5401b2c2f142a09536d6fa9b57ac95f0685 (from https://pypi.org/simple/indelpost/), version: 0.1.6 2022-09-20T19:51:07,967 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/b1/2d/d0e5613b6228ecaadc8426369234d2f2f845ef4b0efc37eb6a9334154eb6/indelpost-0.1.7-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=3426f3149cda97584ccd7b6e87bf8604bd026f7cb71d7153ab03a928773933f2 (from https://pypi.org/simple/indelpost/) 2022-09-20T19:51:07,967 Found link https://files.pythonhosted.org/packages/1d/49/ad1dceecb2fc74d484b251f5065c94e5206a53613d3c24384c61201d15b3/indelpost-0.1.7.tar.gz#sha256=842dffbb6eeeb4c1f6c9cc0ea18d5a97e2ea75c3571f925e984d2411c8c4624a (from https://pypi.org/simple/indelpost/), version: 0.1.7 2022-09-20T19:51:07,968 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/46/cb/e3d2658e49d38ec2d4e5c808890b859d40fea97cd421707db6efda498aa9/indelpost-0.1.8-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=5c358b019dd1ba28f789e3dcf9ba2d4ea6efbbb9c04690a10b98adda58eaa983 (from https://pypi.org/simple/indelpost/) 2022-09-20T19:51:07,968 Found link https://files.pythonhosted.org/packages/15/55/087b1218bd7993207557d92e81ffe95dacade518fa4ab67c5fe84bfa8797/indelpost-0.1.8.tar.gz#sha256=b8eef717cfdad225ed11536adbcc4568f77a0016ffe4998af44a9d42acb41fc3 (from https://pypi.org/simple/indelpost/), version: 0.1.8 2022-09-20T19:51:07,969 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/06/8b/5520d53eb5db5ae352823c78ac6654ec5da871223b0fa68063be379c7578/indelpost-0.1.9-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=2c075a126049fa8ae580d30daf580bb1ecf6368bda16e921c508034b3d95c99e (from https://pypi.org/simple/indelpost/) 2022-09-20T19:51:07,970 Found link https://files.pythonhosted.org/packages/cf/a2/c69a2fac134bdcb58260eba54f323af7085836fa1121f1435154259ed7ed/indelpost-0.1.9.tar.gz#sha256=aa3456ac1f4e677524fc59c9afc7532730371b435474b6f0f79f396d20e8de60 (from https://pypi.org/simple/indelpost/), version: 0.1.9 2022-09-20T19:51:07,971 Fetching project page and analyzing links: https://www.piwheels.org/simple/indelpost/ 2022-09-20T19:51:07,971 Getting page https://www.piwheels.org/simple/indelpost/ 2022-09-20T19:51:07,973 Found index url https://www.piwheels.org/simple 2022-09-20T19:51:08,424 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.9-cp37-cp37m-linux_armv7l.whl#sha256=d8515637b1cd04c9689eac170771719fd2f1ea50f18aea3326616ae3f12b8183 (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,425 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.9-cp37-cp37m-linux_armv6l.whl#sha256=d8515637b1cd04c9689eac170771719fd2f1ea50f18aea3326616ae3f12b8183 (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,426 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.8-cp39-cp39-linux_armv7l.whl#sha256=99b4070611f04a313a631aa9d1abc38544818f03296cdd76021131318497ab11 (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,426 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.8-cp39-cp39-linux_armv6l.whl#sha256=99b4070611f04a313a631aa9d1abc38544818f03296cdd76021131318497ab11 (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,427 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.8-cp37-cp37m-linux_armv7l.whl#sha256=c40acb17510a588797f13ff0e101549ac2b9d2e61f82954a28f48edd6432e411 (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,427 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.8-cp37-cp37m-linux_armv6l.whl#sha256=c40acb17510a588797f13ff0e101549ac2b9d2e61f82954a28f48edd6432e411 (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,428 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.8-cp35-cp35m-linux_armv7l.whl#sha256=f7838c7a1da294affea271852d1e4dc31ae67d395ec0237bde5bce0fc8f3faf6 (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,428 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.8-cp35-cp35m-linux_armv6l.whl#sha256=f7838c7a1da294affea271852d1e4dc31ae67d395ec0237bde5bce0fc8f3faf6 (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,429 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.7-cp39-cp39-linux_armv7l.whl#sha256=0ce1dfc2ebbdf77714be1d25a5acb833a500dbf5f95a3539b6c4fa56d0938eed (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,429 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.7-cp39-cp39-linux_armv6l.whl#sha256=0ce1dfc2ebbdf77714be1d25a5acb833a500dbf5f95a3539b6c4fa56d0938eed (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,430 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.7-cp37-cp37m-linux_armv7l.whl#sha256=3ee6dc5d8f3af8abe85b3fbd0b57bfecf62440effa5e3dec2fb2d4af5582d6cb (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,430 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.7-cp37-cp37m-linux_armv6l.whl#sha256=3ee6dc5d8f3af8abe85b3fbd0b57bfecf62440effa5e3dec2fb2d4af5582d6cb (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,431 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.7-cp35-cp35m-linux_armv7l.whl#sha256=45d522081bd999e88622b3f6853ed39d08e9329a193c2802b370b31aeea4ac1f (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,431 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.7-cp35-cp35m-linux_armv6l.whl#sha256=45d522081bd999e88622b3f6853ed39d08e9329a193c2802b370b31aeea4ac1f (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,432 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.6-cp39-cp39-linux_armv7l.whl#sha256=40384927b582f8c1468e689af5467455482a2d8fe807f4fd39a85bce5aa3486e (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,432 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.6-cp39-cp39-linux_armv6l.whl#sha256=40384927b582f8c1468e689af5467455482a2d8fe807f4fd39a85bce5aa3486e (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,433 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.6-cp37-cp37m-linux_armv7l.whl#sha256=b87c71c0eef4a84e4273697527aced120c3f6618c1aca00df8a7e3c298f3b893 (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,433 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.6-cp37-cp37m-linux_armv6l.whl#sha256=b87c71c0eef4a84e4273697527aced120c3f6618c1aca00df8a7e3c298f3b893 (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,434 Skipping link: No binaries permitted for indelpost: 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https://www.piwheels.org/simple/indelpost/indelpost-0.0.4-cp39-cp39-linux_armv7l.whl#sha256=845a592c16ea5f5678c909156fc09d419dd8a8235966b6af09eeb7f3741eb793 (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,458 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.0.4-cp39-cp39-linux_armv6l.whl#sha256=845a592c16ea5f5678c909156fc09d419dd8a8235966b6af09eeb7f3741eb793 (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,459 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.0.4-cp37-cp37m-linux_armv7l.whl#sha256=7c4dcb12099c6bc35dfd26fe521b219dd38b62084183feaa13ed29fa181233fa (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,459 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.0.4-cp37-cp37m-linux_armv6l.whl#sha256=7c4dcb12099c6bc35dfd26fe521b219dd38b62084183feaa13ed29fa181233fa (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,460 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.0.4-cp35-cp35m-linux_armv7l.whl#sha256=ef2c25b3285b57f47cb57dc92d2c4e76e2e8b5f4ab9a6d50c547bcad37e6e6f1 (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,460 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.0.4-cp35-cp35m-linux_armv6l.whl#sha256=ef2c25b3285b57f47cb57dc92d2c4e76e2e8b5f4ab9a6d50c547bcad37e6e6f1 (from https://www.piwheels.org/simple/indelpost/) 2022-09-20T19:51:08,461 Skipping link: not a file: https://www.piwheels.org/simple/indelpost/ 2022-09-20T19:51:08,461 Skipping link: not a file: https://pypi.org/simple/indelpost/ 2022-09-20T19:51:08,510 Given no hashes to check 1 links for project 'indelpost': discarding no candidates 2022-09-20T19:51:08,552 Collecting indelpost==0.1.9 2022-09-20T19:51:08,556 Created temporary directory: /tmp/pip-unpack-qm5d4ar3 2022-09-20T19:51:08,677 Downloading indelpost-0.1.9.tar.gz (972 kB) 2022-09-20T19:51:09,748 Added indelpost==0.1.9 from https://files.pythonhosted.org/packages/cf/a2/c69a2fac134bdcb58260eba54f323af7085836fa1121f1435154259ed7ed/indelpost-0.1.9.tar.gz#sha256=aa3456ac1f4e677524fc59c9afc7532730371b435474b6f0f79f396d20e8de60 to build tracker '/tmp/pip-build-tracker-nw87yhvm' 2022-09-20T19:51:09,765 Created temporary directory: /tmp/pip-build-env-__5swbt1 2022-09-20T19:51:09,786 Created temporary directory: /tmp/pip-standalone-pip-__ounjrz 2022-09-20T19:51:12,200 Installing build dependencies: started 2022-09-20T19:51:12,202 Running command pip subprocess to install build dependencies 2022-09-20T19:51:23,382 Using pip 22.1.2 from /tmp/pip-standalone-pip-__ounjrz/__env_pip__.zip/pip (python 3.9) 2022-09-20T19:51:25,111 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-09-20T19:51:29,402 Collecting setuptools 2022-09-20T19:51:29,692 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.3.0-py3-none-any.whl (1.2 MB) 2022-09-20T19:51:30,360 Collecting wheel 2022-09-20T19:51:30,396 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-09-20T19:51:31,344 Collecting pysam>=0.15.0 2022-09-20T19:51:31,385 Downloading https://www.piwheels.org/simple/pysam/pysam-0.19.1-cp39-cp39-linux_armv7l.whl (11.4 MB) 2022-09-20T19:51:33,921 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.4/11.4 MB 4.3 MB/s eta 0:00:00 2022-09-20T19:51:38,550 Collecting numpy>=1.16.0 2022-09-20T19:51:41,050 Using cached https://www.piwheels.org/simple/numpy/numpy-1.23.3-cp39-cp39-linux_armv7l.whl (12.4 MB) 2022-09-20T19:51:45,852 Collecting cython>=0.29.12 2022-09-20T19:51:46,926 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB) 2022-09-20T19:51:55,630 Installing collected packages: pysam, wheel, setuptools, numpy, cython 2022-09-20T19:51:58,754 Creating /tmp/pip-build-env-__5swbt1/overlay/bin 2022-09-20T19:51:58,759 changing mode of /tmp/pip-build-env-__5swbt1/overlay/bin/wheel to 755 2022-09-20T19:52:22,979 changing mode of /tmp/pip-build-env-__5swbt1/overlay/bin/f2py to 755 2022-09-20T19:52:22,985 changing mode of /tmp/pip-build-env-__5swbt1/overlay/bin/f2py3 to 755 2022-09-20T19:52:22,990 changing mode of /tmp/pip-build-env-__5swbt1/overlay/bin/f2py3.9 to 755 2022-09-20T19:52:29,362 changing mode of /tmp/pip-build-env-__5swbt1/overlay/bin/cygdb to 755 2022-09-20T19:52:29,367 changing mode of /tmp/pip-build-env-__5swbt1/overlay/bin/cython to 755 2022-09-20T19:52:29,371 changing mode of /tmp/pip-build-env-__5swbt1/overlay/bin/cythonize to 755 2022-09-20T19:52:29,427 Successfully installed cython-0.29.32 numpy-1.23.3 pysam-0.19.1 setuptools-65.3.0 wheel-0.37.1 2022-09-20T19:52:29,647 --- Logging error --- 2022-09-20T19:52:29,665 Traceback (most recent call last): 2022-09-20T19:52:29,666 File "/tmp/pip-standalone-pip-__ounjrz/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-09-20T19:52:29,666 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-09-20T19:52:29,666 File "/tmp/pip-standalone-pip-__ounjrz/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-09-20T19:52:29,667 extend(render(renderable, render_options)) 2022-09-20T19:52:29,667 File "/tmp/pip-standalone-pip-__ounjrz/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-09-20T19:52:29,667 for render_output in iter_render: 2022-09-20T19:52:29,668 File "/tmp/pip-standalone-pip-__ounjrz/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-09-20T19:52:29,668 for line in lines: 2022-09-20T19:52:29,668 File "/tmp/pip-standalone-pip-__ounjrz/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-09-20T19:52:29,669 for segment in segments: 2022-09-20T19:52:29,669 File "/tmp/pip-standalone-pip-__ounjrz/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-09-20T19:52:29,669 renderable = rich_cast(renderable) 2022-09-20T19:52:29,670 File "/tmp/pip-standalone-pip-__ounjrz/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-09-20T19:52:29,670 renderable = cast_method() 2022-09-20T19:52:29,670 File "/tmp/pip-standalone-pip-__ounjrz/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-09-20T19:52:29,671 pip_cmd = get_best_invocation_for_this_pip() 2022-09-20T19:52:29,671 File "/tmp/pip-standalone-pip-__ounjrz/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip 2022-09-20T19:52:29,671 if found_executable and os.path.samefile( 2022-09-20T19:52:29,672 File "/usr/lib/python3.9/genericpath.py", line 101, in samefile 2022-09-20T19:52:29,672 s2 = os.stat(f2) 2022-09-20T19:52:29,672 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9' 2022-09-20T19:52:29,673 Call stack: 2022-09-20T19:52:29,677 File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main 2022-09-20T19:52:29,678 return _run_code(code, main_globals, None, 2022-09-20T19:52:29,678 File "/usr/lib/python3.9/runpy.py", line 87, in _run_code 2022-09-20T19:52:29,678 exec(code, run_globals) 2022-09-20T19:52:29,679 File "/tmp/pip-standalone-pip-__ounjrz/__env_pip__.zip/pip/__main__.py", line 31, in 2022-09-20T19:52:29,679 sys.exit(_main()) 2022-09-20T19:52:29,679 File "/tmp/pip-standalone-pip-__ounjrz/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-09-20T19:52:29,680 return command.main(cmd_args) 2022-09-20T19:52:29,680 File "/tmp/pip-standalone-pip-__ounjrz/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-09-20T19:52:29,680 return self._main(args) 2022-09-20T19:52:29,681 File "/tmp/pip-standalone-pip-__ounjrz/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-09-20T19:52:29,681 self.handle_pip_version_check(options) 2022-09-20T19:52:29,681 File "/tmp/pip-standalone-pip-__ounjrz/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-09-20T19:52:29,682 pip_self_version_check(session, options) 2022-09-20T19:52:29,682 File "/tmp/pip-standalone-pip-__ounjrz/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-09-20T19:52:29,682 logger.info("[present-rich] %s", upgrade_prompt) 2022-09-20T19:52:29,682 File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info 2022-09-20T19:52:29,683 self._log(INFO, msg, args, **kwargs) 2022-09-20T19:52:29,683 File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log 2022-09-20T19:52:29,683 self.handle(record) 2022-09-20T19:52:29,684 File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle 2022-09-20T19:52:29,684 self.callHandlers(record) 2022-09-20T19:52:29,684 File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers 2022-09-20T19:52:29,684 hdlr.handle(record) 2022-09-20T19:52:29,685 File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle 2022-09-20T19:52:29,685 self.emit(record) 2022-09-20T19:52:29,685 File "/tmp/pip-standalone-pip-__ounjrz/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-09-20T19:52:29,685 self.handleError(record) 2022-09-20T19:52:29,686 Message: '[present-rich] %s' 2022-09-20T19:52:29,686 Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),) 2022-09-20T19:52:30,404 Installing build dependencies: finished with status 'done' 2022-09-20T19:52:30,435 Getting requirements to build wheel: started 2022-09-20T19:52:30,437 Running command Getting requirements to build wheel 2022-09-20T19:53:30,505 Compiling indelpost/variant.pyx because it depends on /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/libchtslib.pxd. 2022-09-20T19:53:30,507 Compiling indelpost/utilities.pyx because it depends on /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/libchtslib.pxd. 2022-09-20T19:53:30,507 Compiling indelpost/pileup.pyx because it depends on /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/libchtslib.pxd. 2022-09-20T19:53:30,508 Compiling indelpost/varaln.pyx because it depends on /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/libchtslib.pxd. 2022-09-20T19:53:30,508 Compiling indelpost/contig.pyx because it depends on /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/libchtslib.pxd. 2022-09-20T19:53:30,509 Compiling indelpost/local_reference.pyx because it depends on /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/libchtslib.pxd. 2022-09-20T19:53:30,509 Compiling indelpost/softclip.pyx because it depends on /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/libchtslib.pxd. 2022-09-20T19:53:30,509 Compiling indelpost/localn.pyx because it depends on /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/libchtslib.pxd. 2022-09-20T19:53:30,509 Compiling indelpost/gappedaln.pyx because it depends on /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/libchtslib.pxd. 2022-09-20T19:53:30,510 [1/9] Cythonizing indelpost/contig.pyx 2022-09-20T19:53:30,510 [2/9] Cythonizing indelpost/gappedaln.pyx 2022-09-20T19:53:30,510 [3/9] Cythonizing indelpost/local_reference.pyx 2022-09-20T19:53:30,511 [4/9] Cythonizing indelpost/localn.pyx 2022-09-20T19:53:30,511 [5/9] Cythonizing indelpost/pileup.pyx 2022-09-20T19:53:30,511 [6/9] Cythonizing indelpost/softclip.pyx 2022-09-20T19:53:30,512 [7/9] Cythonizing indelpost/utilities.pyx 2022-09-20T19:53:30,512 [8/9] Cythonizing indelpost/varaln.pyx 2022-09-20T19:53:30,512 [9/9] Cythonizing indelpost/variant.pyx 2022-09-20T19:53:34,553 running egg_info 2022-09-20T19:53:35,155 writing indelpost.egg-info/PKG-INFO 2022-09-20T19:53:35,725 writing dependency_links to indelpost.egg-info/dependency_links.txt 2022-09-20T19:53:38,544 writing requirements to indelpost.egg-info/requires.txt 2022-09-20T19:53:39,109 writing top-level names to indelpost.egg-info/top_level.txt 2022-09-20T19:53:39,789 reading manifest file 'indelpost.egg-info/SOURCES.txt' 2022-09-20T19:53:39,795 reading manifest template 'MANIFEST.in' 2022-09-20T19:53:39,801 adding license file 'LICENSE' 2022-09-20T19:53:39,809 writing manifest file 'indelpost.egg-info/SOURCES.txt' 2022-09-20T19:53:40,975 Getting requirements to build wheel: finished with status 'done' 2022-09-20T19:53:41,000 Created temporary directory: /tmp/pip-modern-metadata-q8cg1mvh 2022-09-20T19:53:41,006 Preparing metadata (pyproject.toml): started 2022-09-20T19:53:41,009 Running command Preparing metadata (pyproject.toml) 2022-09-20T19:53:49,559 running dist_info 2022-09-20T19:53:50,186 creating /tmp/pip-modern-metadata-q8cg1mvh/indelpost.egg-info 2022-09-20T19:53:50,790 writing /tmp/pip-modern-metadata-q8cg1mvh/indelpost.egg-info/PKG-INFO 2022-09-20T19:53:51,363 writing dependency_links to /tmp/pip-modern-metadata-q8cg1mvh/indelpost.egg-info/dependency_links.txt 2022-09-20T19:53:54,216 writing requirements to /tmp/pip-modern-metadata-q8cg1mvh/indelpost.egg-info/requires.txt 2022-09-20T19:53:54,788 writing top-level names to /tmp/pip-modern-metadata-q8cg1mvh/indelpost.egg-info/top_level.txt 2022-09-20T19:53:54,791 writing manifest file '/tmp/pip-modern-metadata-q8cg1mvh/indelpost.egg-info/SOURCES.txt' 2022-09-20T19:53:55,478 reading manifest file '/tmp/pip-modern-metadata-q8cg1mvh/indelpost.egg-info/SOURCES.txt' 2022-09-20T19:53:55,482 reading manifest template 'MANIFEST.in' 2022-09-20T19:53:55,488 adding license file 'LICENSE' 2022-09-20T19:53:55,494 writing manifest file '/tmp/pip-modern-metadata-q8cg1mvh/indelpost.egg-info/SOURCES.txt' 2022-09-20T19:53:55,497 creating '/tmp/pip-modern-metadata-q8cg1mvh/indelpost-0.1.9.dist-info' 2022-09-20T19:53:55,681 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-09-20T19:53:56,042 Preparing metadata (pyproject.toml): finished with status 'done' 2022-09-20T19:53:56,056 Source in /tmp/pip-wheel-_6bxn5gf/indelpost_0aa0b33f2ccd485ebb263371650e6107 has version 0.1.9, which satisfies requirement indelpost==0.1.9 from https://files.pythonhosted.org/packages/cf/a2/c69a2fac134bdcb58260eba54f323af7085836fa1121f1435154259ed7ed/indelpost-0.1.9.tar.gz#sha256=aa3456ac1f4e677524fc59c9afc7532730371b435474b6f0f79f396d20e8de60 2022-09-20T19:53:56,058 Removed indelpost==0.1.9 from https://files.pythonhosted.org/packages/cf/a2/c69a2fac134bdcb58260eba54f323af7085836fa1121f1435154259ed7ed/indelpost-0.1.9.tar.gz#sha256=aa3456ac1f4e677524fc59c9afc7532730371b435474b6f0f79f396d20e8de60 from build tracker '/tmp/pip-build-tracker-nw87yhvm' 2022-09-20T19:53:56,067 Created temporary directory: /tmp/pip-unpack-hjbg9qrr 2022-09-20T19:53:56,068 Building wheels for collected packages: indelpost 2022-09-20T19:53:56,077 Created temporary directory: /tmp/pip-wheel-qknyigft 2022-09-20T19:53:56,078 Destination directory: /tmp/pip-wheel-qknyigft 2022-09-20T19:53:56,083 Building wheel for indelpost (pyproject.toml): started 2022-09-20T19:53:56,085 Running command Building wheel for indelpost (pyproject.toml) 2022-09-20T19:54:03,830 running bdist_wheel 2022-09-20T19:54:03,931 running build 2022-09-20T19:54:03,932 running build_py 2022-09-20T19:54:04,529 creating build 2022-09-20T19:54:04,530 creating build/lib.linux-armv7l-cpython-39 2022-09-20T19:54:04,531 creating build/lib.linux-armv7l-cpython-39/indelpost 2022-09-20T19:54:04,534 copying indelpost/alleles.py -> build/lib.linux-armv7l-cpython-39/indelpost 2022-09-20T19:54:04,539 copying indelpost/version.py -> build/lib.linux-armv7l-cpython-39/indelpost 2022-09-20T19:54:04,543 copying indelpost/consensus.py -> build/lib.linux-armv7l-cpython-39/indelpost 2022-09-20T19:54:04,547 copying indelpost/__init__.py -> build/lib.linux-armv7l-cpython-39/indelpost 2022-09-20T19:54:04,552 running build_ext 2022-09-20T19:54:04,566 building 'indelpost.variant' extension 2022-09-20T19:54:04,567 creating build/temp.linux-armv7l-cpython-39 2022-09-20T19:54:04,567 creating build/temp.linux-armv7l-cpython-39/indelpost 2022-09-20T19:54:04,569 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c indelpost/variant.c -o build/temp.linux-armv7l-cpython-39/indelpost/variant.o 2022-09-20T19:54:05,459 In file included from /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/htslib_util.h:4, 2022-09-20T19:54:05,460 from indelpost/variant.c:735: 2022-09-20T19:54:05,460 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h: In function ‘sam_format_aux1’: 2022-09-20T19:54:05,461 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-09-20T19:54:05,461 1550 | if ((end - s) / sub_type_size < n) 2022-09-20T19:54:05,461 | ^ 2022-09-20T19:54:07,983 In file included from /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4, 2022-09-20T19:54:07,984 from indelpost/variant.c:745: 2022-09-20T19:54:07,984 At top level: 2022-09-20T19:54:07,985 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:185:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2022-09-20T19:54:07,985 185 | SCOPE int kseq_read(kseq_t *seq) \ 2022-09-20T19:54:07,986 | ^~~~~~~~~ 2022-09-20T19:54:07,986 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:238:2: note: in expansion of macro ‘__KSEQ_READ’ 2022-09-20T19:54:07,987 238 | __KSEQ_READ(SCOPE) 2022-09-20T19:54:07,987 | ^~~~~~~~~~~ 2022-09-20T19:54:07,987 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:54:07,988 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:54:07,988 | ^~~~~~~~~~ 2022-09-20T19:54:07,988 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:54:07,989 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:54:07,989 | ^~~~~~~~~ 2022-09-20T19:54:07,989 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:171:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2022-09-20T19:54:07,990 171 | SCOPE void kseq_destroy(kseq_t *ks) \ 2022-09-20T19:54:07,990 | ^~~~~~~~~~~~ 2022-09-20T19:54:07,990 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-09-20T19:54:07,991 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-09-20T19:54:07,991 | ^~~~~~~~~~~~ 2022-09-20T19:54:07,991 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:54:07,992 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:54:07,992 | ^~~~~~~~~~ 2022-09-20T19:54:07,992 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:54:07,993 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:54:07,993 | ^~~~~~~~~ 2022-09-20T19:54:07,993 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:165:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2022-09-20T19:54:07,993 165 | SCOPE kseq_t *kseq_init(type_t fd) \ 2022-09-20T19:54:07,994 | ^~~~~~~~~ 2022-09-20T19:54:07,994 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-09-20T19:54:07,994 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-09-20T19:54:07,995 | ^~~~~~~~~~~~ 2022-09-20T19:54:07,995 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:54:07,995 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:54:07,996 | ^~~~~~~~~~ 2022-09-20T19:54:07,996 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:54:07,996 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:54:07,996 | ^~~~~~~~~ 2022-09-20T19:54:47,216 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/indelpost/variant.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/indelpost/variant.cpython-39-arm-linux-gnueabihf.so 2022-09-20T19:54:47,612 building 'indelpost.utilities' extension 2022-09-20T19:54:47,614 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c indelpost/utilities.c -o build/temp.linux-armv7l-cpython-39/indelpost/utilities.o 2022-09-20T19:54:48,435 In file included from /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/htslib_util.h:4, 2022-09-20T19:54:48,436 from indelpost/utilities.c:735: 2022-09-20T19:54:48,436 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h: In function ‘sam_format_aux1’: 2022-09-20T19:54:48,436 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-09-20T19:54:48,437 1550 | if ((end - s) / sub_type_size < n) 2022-09-20T19:54:48,437 | ^ 2022-09-20T19:54:53,148 In file included from /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4, 2022-09-20T19:54:53,149 from indelpost/utilities.c:745: 2022-09-20T19:54:53,149 At top level: 2022-09-20T19:54:53,150 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:185:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2022-09-20T19:54:53,150 185 | SCOPE int kseq_read(kseq_t *seq) \ 2022-09-20T19:54:53,151 | ^~~~~~~~~ 2022-09-20T19:54:53,151 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:238:2: note: in expansion of macro ‘__KSEQ_READ’ 2022-09-20T19:54:53,151 238 | __KSEQ_READ(SCOPE) 2022-09-20T19:54:53,152 | ^~~~~~~~~~~ 2022-09-20T19:54:53,152 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:54:53,152 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:54:53,153 | ^~~~~~~~~~ 2022-09-20T19:54:53,153 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:54:53,153 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:54:53,154 | ^~~~~~~~~ 2022-09-20T19:54:53,154 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:171:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2022-09-20T19:54:53,155 171 | SCOPE void kseq_destroy(kseq_t *ks) \ 2022-09-20T19:54:53,155 | ^~~~~~~~~~~~ 2022-09-20T19:54:53,155 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-09-20T19:54:53,156 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-09-20T19:54:53,156 | ^~~~~~~~~~~~ 2022-09-20T19:54:53,156 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:54:53,157 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:54:53,157 | ^~~~~~~~~~ 2022-09-20T19:54:53,157 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:54:53,158 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:54:53,158 | ^~~~~~~~~ 2022-09-20T19:54:53,158 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:165:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2022-09-20T19:54:53,159 165 | SCOPE kseq_t *kseq_init(type_t fd) \ 2022-09-20T19:54:53,159 | ^~~~~~~~~ 2022-09-20T19:54:53,159 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-09-20T19:54:53,159 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-09-20T19:54:53,160 | ^~~~~~~~~~~~ 2022-09-20T19:54:53,160 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:54:53,160 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:54:53,161 | ^~~~~~~~~~ 2022-09-20T19:54:53,161 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:54:53,161 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:54:53,162 | ^~~~~~~~~ 2022-09-20T19:55:48,969 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/indelpost/utilities.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/indelpost/utilities.cpython-39-arm-linux-gnueabihf.so 2022-09-20T19:55:49,460 building 'indelpost.pileup' extension 2022-09-20T19:55:49,462 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c indelpost/pileup.c -o build/temp.linux-armv7l-cpython-39/indelpost/pileup.o 2022-09-20T19:55:50,322 In file included from /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/htslib_util.h:4, 2022-09-20T19:55:50,322 from indelpost/pileup.c:735: 2022-09-20T19:55:50,323 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h: In function ‘sam_format_aux1’: 2022-09-20T19:55:50,323 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-09-20T19:55:50,324 1550 | if ((end - s) / sub_type_size < n) 2022-09-20T19:55:50,324 | ^ 2022-09-20T19:55:55,234 At top level: 2022-09-20T19:55:55,247 indelpost/pileup.c:8519:18: warning: ‘__pyx_f_9indelpost_6pileup_leftalign_cigar’ defined but not used [-Wunused-function] 2022-09-20T19:55:55,247 8519 | static PyObject *__pyx_f_9indelpost_6pileup_leftalign_cigar(PyObject *__pyx_v_cigarstring, struct __pyx_obj_9indelpost_7variant_Variant *__pyx_v_target, int __pyx_v_read_start) { 2022-09-20T19:55:55,248 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-20T19:55:55,249 In file included from /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4, 2022-09-20T19:55:55,249 from indelpost/pileup.c:745: 2022-09-20T19:55:55,249 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:185:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2022-09-20T19:55:55,250 185 | SCOPE int kseq_read(kseq_t *seq) \ 2022-09-20T19:55:55,250 | ^~~~~~~~~ 2022-09-20T19:55:55,251 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:238:2: note: in expansion of macro ‘__KSEQ_READ’ 2022-09-20T19:55:55,251 238 | __KSEQ_READ(SCOPE) 2022-09-20T19:55:55,251 | ^~~~~~~~~~~ 2022-09-20T19:55:55,252 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:55:55,252 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:55:55,252 | ^~~~~~~~~~ 2022-09-20T19:55:55,253 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:55:55,253 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:55:55,253 | ^~~~~~~~~ 2022-09-20T19:55:55,254 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:171:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2022-09-20T19:55:55,254 171 | SCOPE void kseq_destroy(kseq_t *ks) \ 2022-09-20T19:55:55,254 | ^~~~~~~~~~~~ 2022-09-20T19:55:55,255 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-09-20T19:55:55,255 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-09-20T19:55:55,255 | ^~~~~~~~~~~~ 2022-09-20T19:55:55,256 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:55:55,256 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:55:55,256 | ^~~~~~~~~~ 2022-09-20T19:55:55,257 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:55:55,257 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:55:55,257 | ^~~~~~~~~ 2022-09-20T19:55:55,258 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:165:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2022-09-20T19:55:55,258 165 | SCOPE kseq_t *kseq_init(type_t fd) \ 2022-09-20T19:55:55,258 | ^~~~~~~~~ 2022-09-20T19:55:55,259 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-09-20T19:55:55,259 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-09-20T19:55:55,259 | ^~~~~~~~~~~~ 2022-09-20T19:55:55,259 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:55:55,260 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:55:55,260 | ^~~~~~~~~~ 2022-09-20T19:55:55,260 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:55:55,261 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:55:55,261 | ^~~~~~~~~ 2022-09-20T19:57:26,520 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/indelpost/pileup.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/indelpost/pileup.cpython-39-arm-linux-gnueabihf.so 2022-09-20T19:57:27,034 building 'indelpost.varaln' extension 2022-09-20T19:57:27,036 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c indelpost/varaln.c -o build/temp.linux-armv7l-cpython-39/indelpost/varaln.o 2022-09-20T19:57:27,923 In file included from /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/htslib_util.h:4, 2022-09-20T19:57:27,923 from indelpost/varaln.c:735: 2022-09-20T19:57:27,924 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h: In function ‘sam_format_aux1’: 2022-09-20T19:57:27,924 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-09-20T19:57:27,925 1550 | if ((end - s) / sub_type_size < n) 2022-09-20T19:57:27,925 | ^ 2022-09-20T19:57:32,453 In file included from /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4, 2022-09-20T19:57:32,454 from indelpost/varaln.c:745: 2022-09-20T19:57:32,454 At top level: 2022-09-20T19:57:32,456 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:185:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2022-09-20T19:57:32,456 185 | SCOPE int kseq_read(kseq_t *seq) \ 2022-09-20T19:57:32,457 | ^~~~~~~~~ 2022-09-20T19:57:32,457 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:238:2: note: in expansion of macro ‘__KSEQ_READ’ 2022-09-20T19:57:32,457 238 | __KSEQ_READ(SCOPE) 2022-09-20T19:57:32,458 | ^~~~~~~~~~~ 2022-09-20T19:57:32,458 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:57:32,459 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:57:32,459 | ^~~~~~~~~~ 2022-09-20T19:57:32,459 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:57:32,460 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:57:32,460 | ^~~~~~~~~ 2022-09-20T19:57:32,460 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:171:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2022-09-20T19:57:32,461 171 | SCOPE void kseq_destroy(kseq_t *ks) \ 2022-09-20T19:57:32,461 | ^~~~~~~~~~~~ 2022-09-20T19:57:32,462 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-09-20T19:57:32,462 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-09-20T19:57:32,462 | ^~~~~~~~~~~~ 2022-09-20T19:57:32,463 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:57:32,463 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:57:32,463 | ^~~~~~~~~~ 2022-09-20T19:57:32,464 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:57:32,464 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:57:32,464 | ^~~~~~~~~ 2022-09-20T19:57:32,464 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:165:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2022-09-20T19:57:32,465 165 | SCOPE kseq_t *kseq_init(type_t fd) \ 2022-09-20T19:57:32,465 | ^~~~~~~~~ 2022-09-20T19:57:32,465 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-09-20T19:57:32,466 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-09-20T19:57:32,466 | ^~~~~~~~~~~~ 2022-09-20T19:57:32,466 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:57:32,467 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:57:32,467 | ^~~~~~~~~~ 2022-09-20T19:57:32,467 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:57:32,468 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:57:32,468 | ^~~~~~~~~ 2022-09-20T19:58:47,013 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/indelpost/varaln.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/indelpost/varaln.cpython-39-arm-linux-gnueabihf.so 2022-09-20T19:58:47,507 building 'indelpost.contig' extension 2022-09-20T19:58:47,509 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c indelpost/contig.c -o build/temp.linux-armv7l-cpython-39/indelpost/contig.o 2022-09-20T19:58:48,386 In file included from /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/htslib_util.h:4, 2022-09-20T19:58:48,387 from indelpost/contig.c:735: 2022-09-20T19:58:48,387 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h: In function ‘sam_format_aux1’: 2022-09-20T19:58:48,388 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-09-20T19:58:48,388 1550 | if ((end - s) / sub_type_size < n) 2022-09-20T19:58:48,388 | ^ 2022-09-20T19:58:50,909 In file included from /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4, 2022-09-20T19:58:50,910 from indelpost/contig.c:745: 2022-09-20T19:58:50,910 At top level: 2022-09-20T19:58:50,911 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:185:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2022-09-20T19:58:50,911 185 | SCOPE int kseq_read(kseq_t *seq) \ 2022-09-20T19:58:50,911 | ^~~~~~~~~ 2022-09-20T19:58:50,912 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:238:2: note: in expansion of macro ‘__KSEQ_READ’ 2022-09-20T19:58:50,912 238 | __KSEQ_READ(SCOPE) 2022-09-20T19:58:50,912 | ^~~~~~~~~~~ 2022-09-20T19:58:50,913 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:58:50,913 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:58:50,913 | ^~~~~~~~~~ 2022-09-20T19:58:50,914 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:58:50,914 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:58:50,914 | ^~~~~~~~~ 2022-09-20T19:58:50,915 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:171:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2022-09-20T19:58:50,915 171 | SCOPE void kseq_destroy(kseq_t *ks) \ 2022-09-20T19:58:50,916 | ^~~~~~~~~~~~ 2022-09-20T19:58:50,916 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-09-20T19:58:50,916 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-09-20T19:58:50,917 | ^~~~~~~~~~~~ 2022-09-20T19:58:50,917 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:58:50,917 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:58:50,918 | ^~~~~~~~~~ 2022-09-20T19:58:50,918 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:58:50,918 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:58:50,919 | ^~~~~~~~~ 2022-09-20T19:58:50,919 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:165:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2022-09-20T19:58:50,919 165 | SCOPE kseq_t *kseq_init(type_t fd) \ 2022-09-20T19:58:50,920 | ^~~~~~~~~ 2022-09-20T19:58:50,920 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-09-20T19:58:50,920 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-09-20T19:58:50,921 | ^~~~~~~~~~~~ 2022-09-20T19:58:50,921 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:58:50,921 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:58:50,921 | ^~~~~~~~~~ 2022-09-20T19:58:50,922 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:58:50,922 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:58:50,922 | ^~~~~~~~~ 2022-09-20T19:59:22,826 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/indelpost/contig.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/indelpost/contig.cpython-39-arm-linux-gnueabihf.so 2022-09-20T19:59:23,195 building 'indelpost.local_reference' extension 2022-09-20T19:59:23,197 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c indelpost/local_reference.c -o build/temp.linux-armv7l-cpython-39/indelpost/local_reference.o 2022-09-20T19:59:23,996 In file included from /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/htslib_util.h:4, 2022-09-20T19:59:23,996 from indelpost/local_reference.c:735: 2022-09-20T19:59:23,996 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h: In function ‘sam_format_aux1’: 2022-09-20T19:59:23,997 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-09-20T19:59:23,997 1550 | if ((end - s) / sub_type_size < n) 2022-09-20T19:59:23,998 | ^ 2022-09-20T19:59:24,717 In file included from /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4, 2022-09-20T19:59:24,718 from indelpost/local_reference.c:745: 2022-09-20T19:59:24,718 At top level: 2022-09-20T19:59:24,719 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:185:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2022-09-20T19:59:24,719 185 | SCOPE int kseq_read(kseq_t *seq) \ 2022-09-20T19:59:24,719 | ^~~~~~~~~ 2022-09-20T19:59:24,720 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:238:2: note: in expansion of macro ‘__KSEQ_READ’ 2022-09-20T19:59:24,720 238 | __KSEQ_READ(SCOPE) 2022-09-20T19:59:24,720 | ^~~~~~~~~~~ 2022-09-20T19:59:24,721 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:59:24,721 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:59:24,721 | ^~~~~~~~~~ 2022-09-20T19:59:24,722 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:59:24,722 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:59:24,722 | ^~~~~~~~~ 2022-09-20T19:59:24,723 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:171:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2022-09-20T19:59:24,723 171 | SCOPE void kseq_destroy(kseq_t *ks) \ 2022-09-20T19:59:24,723 | ^~~~~~~~~~~~ 2022-09-20T19:59:24,724 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-09-20T19:59:24,724 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-09-20T19:59:24,724 | ^~~~~~~~~~~~ 2022-09-20T19:59:24,725 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:59:24,725 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:59:24,725 | ^~~~~~~~~~ 2022-09-20T19:59:24,726 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:59:24,726 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:59:24,727 | ^~~~~~~~~ 2022-09-20T19:59:24,727 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:165:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2022-09-20T19:59:24,728 165 | SCOPE kseq_t *kseq_init(type_t fd) \ 2022-09-20T19:59:24,728 | ^~~~~~~~~ 2022-09-20T19:59:24,729 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-09-20T19:59:24,729 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-09-20T19:59:24,729 | ^~~~~~~~~~~~ 2022-09-20T19:59:24,730 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:59:24,730 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:59:24,730 | ^~~~~~~~~~ 2022-09-20T19:59:24,731 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:59:24,731 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:59:24,731 | ^~~~~~~~~ 2022-09-20T19:59:33,267 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/indelpost/local_reference.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/indelpost/local_reference.cpython-39-arm-linux-gnueabihf.so 2022-09-20T19:59:33,550 building 'indelpost.softclip' extension 2022-09-20T19:59:33,552 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c indelpost/softclip.c -o build/temp.linux-armv7l-cpython-39/indelpost/softclip.o 2022-09-20T19:59:34,357 In file included from /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/htslib_util.h:4, 2022-09-20T19:59:34,358 from indelpost/softclip.c:735: 2022-09-20T19:59:34,358 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h: In function ‘sam_format_aux1’: 2022-09-20T19:59:34,359 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-09-20T19:59:34,359 1550 | if ((end - s) / sub_type_size < n) 2022-09-20T19:59:34,359 | ^ 2022-09-20T19:59:35,291 In file included from /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4, 2022-09-20T19:59:35,292 from indelpost/softclip.c:745: 2022-09-20T19:59:35,292 At top level: 2022-09-20T19:59:35,294 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:185:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2022-09-20T19:59:35,295 185 | SCOPE int kseq_read(kseq_t *seq) \ 2022-09-20T19:59:35,295 | ^~~~~~~~~ 2022-09-20T19:59:35,295 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:238:2: note: in expansion of macro ‘__KSEQ_READ’ 2022-09-20T19:59:35,296 238 | __KSEQ_READ(SCOPE) 2022-09-20T19:59:35,296 | ^~~~~~~~~~~ 2022-09-20T19:59:35,296 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:59:35,297 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:59:35,297 | ^~~~~~~~~~ 2022-09-20T19:59:35,297 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:59:35,298 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:59:35,298 | ^~~~~~~~~ 2022-09-20T19:59:35,298 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:171:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2022-09-20T19:59:35,299 171 | SCOPE void kseq_destroy(kseq_t *ks) \ 2022-09-20T19:59:35,299 | ^~~~~~~~~~~~ 2022-09-20T19:59:35,300 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-09-20T19:59:35,300 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-09-20T19:59:35,300 | ^~~~~~~~~~~~ 2022-09-20T19:59:35,300 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:59:35,301 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:59:35,301 | ^~~~~~~~~~ 2022-09-20T19:59:35,301 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:59:35,302 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:59:35,302 | ^~~~~~~~~ 2022-09-20T19:59:35,302 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:165:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2022-09-20T19:59:35,303 165 | SCOPE kseq_t *kseq_init(type_t fd) \ 2022-09-20T19:59:35,303 | ^~~~~~~~~ 2022-09-20T19:59:35,303 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-09-20T19:59:35,304 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-09-20T19:59:35,304 | ^~~~~~~~~~~~ 2022-09-20T19:59:35,304 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:59:35,305 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:59:35,305 | ^~~~~~~~~~ 2022-09-20T19:59:35,306 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:59:35,306 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:59:35,306 | ^~~~~~~~~ 2022-09-20T19:59:46,821 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/indelpost/softclip.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/indelpost/softclip.cpython-39-arm-linux-gnueabihf.so 2022-09-20T19:59:47,103 building 'indelpost.localn' extension 2022-09-20T19:59:47,105 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c indelpost/localn.c -o build/temp.linux-armv7l-cpython-39/indelpost/localn.o 2022-09-20T19:59:47,922 In file included from /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/htslib_util.h:4, 2022-09-20T19:59:47,922 from indelpost/localn.c:735: 2022-09-20T19:59:47,922 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h: In function ‘sam_format_aux1’: 2022-09-20T19:59:47,923 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-09-20T19:59:47,923 1550 | if ((end - s) / sub_type_size < n) 2022-09-20T19:59:47,924 | ^ 2022-09-20T19:59:49,983 In file included from /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4, 2022-09-20T19:59:49,983 from indelpost/localn.c:745: 2022-09-20T19:59:49,984 At top level: 2022-09-20T19:59:49,986 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:185:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2022-09-20T19:59:49,987 185 | SCOPE int kseq_read(kseq_t *seq) \ 2022-09-20T19:59:49,987 | ^~~~~~~~~ 2022-09-20T19:59:49,988 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:238:2: note: in expansion of macro ‘__KSEQ_READ’ 2022-09-20T19:59:49,988 238 | __KSEQ_READ(SCOPE) 2022-09-20T19:59:49,988 | ^~~~~~~~~~~ 2022-09-20T19:59:49,989 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:59:49,989 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:59:49,990 | ^~~~~~~~~~ 2022-09-20T19:59:49,990 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:59:49,990 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:59:49,991 | ^~~~~~~~~ 2022-09-20T19:59:49,991 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:171:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2022-09-20T19:59:49,991 171 | SCOPE void kseq_destroy(kseq_t *ks) \ 2022-09-20T19:59:49,992 | ^~~~~~~~~~~~ 2022-09-20T19:59:49,992 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-09-20T19:59:49,992 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-09-20T19:59:49,993 | ^~~~~~~~~~~~ 2022-09-20T19:59:49,993 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:59:49,993 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:59:49,994 | ^~~~~~~~~~ 2022-09-20T19:59:49,994 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:59:49,994 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:59:49,994 | ^~~~~~~~~ 2022-09-20T19:59:49,995 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:165:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2022-09-20T19:59:49,995 165 | SCOPE kseq_t *kseq_init(type_t fd) \ 2022-09-20T19:59:49,995 | ^~~~~~~~~ 2022-09-20T19:59:49,996 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-09-20T19:59:49,996 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-09-20T19:59:49,996 | ^~~~~~~~~~~~ 2022-09-20T19:59:49,997 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T19:59:49,997 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T19:59:49,997 | ^~~~~~~~~~ 2022-09-20T19:59:49,998 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T19:59:49,998 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T19:59:49,998 | ^~~~~~~~~ 2022-09-20T20:00:27,999 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/indelpost/localn.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/indelpost/localn.cpython-39-arm-linux-gnueabihf.so 2022-09-20T20:00:28,364 building 'indelpost.gappedaln' extension 2022-09-20T20:00:28,366 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c indelpost/gappedaln.c -o build/temp.linux-armv7l-cpython-39/indelpost/gappedaln.o 2022-09-20T20:00:29,173 In file included from /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/htslib_util.h:4, 2022-09-20T20:00:29,174 from indelpost/gappedaln.c:735: 2022-09-20T20:00:29,174 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h: In function ‘sam_format_aux1’: 2022-09-20T20:00:29,175 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-09-20T20:00:29,175 1550 | if ((end - s) / sub_type_size < n) 2022-09-20T20:00:29,175 | ^ 2022-09-20T20:00:30,701 In file included from /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4, 2022-09-20T20:00:30,701 from indelpost/gappedaln.c:745: 2022-09-20T20:00:30,701 At top level: 2022-09-20T20:00:30,704 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:185:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2022-09-20T20:00:30,704 185 | SCOPE int kseq_read(kseq_t *seq) \ 2022-09-20T20:00:30,704 | ^~~~~~~~~ 2022-09-20T20:00:30,705 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:238:2: note: in expansion of macro ‘__KSEQ_READ’ 2022-09-20T20:00:30,705 238 | __KSEQ_READ(SCOPE) 2022-09-20T20:00:30,705 | ^~~~~~~~~~~ 2022-09-20T20:00:30,706 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T20:00:30,706 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T20:00:30,706 | ^~~~~~~~~~ 2022-09-20T20:00:30,706 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T20:00:30,707 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T20:00:30,707 | ^~~~~~~~~ 2022-09-20T20:00:30,707 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:171:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2022-09-20T20:00:30,708 171 | SCOPE void kseq_destroy(kseq_t *ks) \ 2022-09-20T20:00:30,708 | ^~~~~~~~~~~~ 2022-09-20T20:00:30,709 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-09-20T20:00:30,709 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-09-20T20:00:30,709 | ^~~~~~~~~~~~ 2022-09-20T20:00:30,710 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T20:00:30,710 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T20:00:30,710 | ^~~~~~~~~~ 2022-09-20T20:00:30,711 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T20:00:30,711 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T20:00:30,711 | ^~~~~~~~~ 2022-09-20T20:00:30,712 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:165:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2022-09-20T20:00:30,712 165 | SCOPE kseq_t *kseq_init(type_t fd) \ 2022-09-20T20:00:30,712 | ^~~~~~~~~ 2022-09-20T20:00:30,713 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-09-20T20:00:30,713 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-09-20T20:00:30,713 | ^~~~~~~~~~~~ 2022-09-20T20:00:30,714 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-09-20T20:00:30,714 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-09-20T20:00:30,714 | ^~~~~~~~~~ 2022-09-20T20:00:30,715 /tmp/pip-build-env-__5swbt1/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-09-20T20:00:30,715 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-09-20T20:00:30,715 | ^~~~~~~~~ 2022-09-20T20:01:02,222 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/indelpost/gappedaln.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/indelpost/gappedaln.cpython-39-arm-linux-gnueabihf.so 2022-09-20T20:01:03,771 installing to build/bdist.linux-armv7l/wheel 2022-09-20T20:01:03,772 running install 2022-09-20T20:01:03,834 running install_lib 2022-09-20T20:01:04,439 creating build/bdist.linux-armv7l 2022-09-20T20:01:04,440 creating build/bdist.linux-armv7l/wheel 2022-09-20T20:01:04,444 creating build/bdist.linux-armv7l/wheel/indelpost 2022-09-20T20:01:04,447 copying build/lib.linux-armv7l-cpython-39/indelpost/alleles.py -> build/bdist.linux-armv7l/wheel/indelpost 2022-09-20T20:01:04,453 copying build/lib.linux-armv7l-cpython-39/indelpost/localn.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/indelpost 2022-09-20T20:01:04,511 copying build/lib.linux-armv7l-cpython-39/indelpost/gappedaln.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/indelpost 2022-09-20T20:01:04,563 copying build/lib.linux-armv7l-cpython-39/indelpost/version.py -> build/bdist.linux-armv7l/wheel/indelpost 2022-09-20T20:01:04,566 copying build/lib.linux-armv7l-cpython-39/indelpost/variant.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/indelpost 2022-09-20T20:01:04,629 copying build/lib.linux-armv7l-cpython-39/indelpost/pileup.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/indelpost 2022-09-20T20:01:04,739 copying build/lib.linux-armv7l-cpython-39/indelpost/softclip.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/indelpost 2022-09-20T20:01:04,766 copying build/lib.linux-armv7l-cpython-39/indelpost/consensus.py -> build/bdist.linux-armv7l/wheel/indelpost 2022-09-20T20:01:04,772 copying build/lib.linux-armv7l-cpython-39/indelpost/__init__.py -> build/bdist.linux-armv7l/wheel/indelpost 2022-09-20T20:01:04,776 copying build/lib.linux-armv7l-cpython-39/indelpost/local_reference.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/indelpost 2022-09-20T20:01:04,796 copying build/lib.linux-armv7l-cpython-39/indelpost/contig.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/indelpost 2022-09-20T20:01:04,851 copying build/lib.linux-armv7l-cpython-39/indelpost/utilities.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/indelpost 2022-09-20T20:01:04,939 copying build/lib.linux-armv7l-cpython-39/indelpost/varaln.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/indelpost 2022-09-20T20:01:05,034 running install_egg_info 2022-09-20T20:01:06,249 running egg_info 2022-09-20T20:01:06,835 writing indelpost.egg-info/PKG-INFO 2022-09-20T20:01:07,389 writing dependency_links to indelpost.egg-info/dependency_links.txt 2022-09-20T20:01:10,168 writing requirements to indelpost.egg-info/requires.txt 2022-09-20T20:01:10,723 writing top-level names to indelpost.egg-info/top_level.txt 2022-09-20T20:01:10,768 reading manifest file 'indelpost.egg-info/SOURCES.txt' 2022-09-20T20:01:10,780 reading manifest template 'MANIFEST.in' 2022-09-20T20:01:10,786 adding license file 'LICENSE' 2022-09-20T20:01:10,794 writing manifest file 'indelpost.egg-info/SOURCES.txt' 2022-09-20T20:01:10,798 Copying indelpost.egg-info to build/bdist.linux-armv7l/wheel/indelpost-0.1.9-py3.9.egg-info 2022-09-20T20:01:10,819 running install_scripts 2022-09-20T20:01:10,940 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-09-20T20:01:10,992 creating build/bdist.linux-armv7l/wheel/indelpost-0.1.9.dist-info/WHEEL 2022-09-20T20:01:10,998 creating '/tmp/pip-wheel-qknyigft/tmpf0chk2u3/indelpost-0.1.9-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-09-20T20:01:11,003 adding 'indelpost/__init__.py' 2022-09-20T20:01:11,009 adding 'indelpost/alleles.py' 2022-09-20T20:01:11,015 adding 'indelpost/consensus.py' 2022-09-20T20:01:11,539 adding 'indelpost/contig.cpython-39-arm-linux-gnueabihf.so' 2022-09-20T20:01:11,954 adding 'indelpost/gappedaln.cpython-39-arm-linux-gnueabihf.so' 2022-09-20T20:01:12,130 adding 'indelpost/local_reference.cpython-39-arm-linux-gnueabihf.so' 2022-09-20T20:01:12,665 adding 'indelpost/localn.cpython-39-arm-linux-gnueabihf.so' 2022-09-20T20:01:13,696 adding 'indelpost/pileup.cpython-39-arm-linux-gnueabihf.so' 2022-09-20T20:01:13,932 adding 'indelpost/softclip.cpython-39-arm-linux-gnueabihf.so' 2022-09-20T20:01:14,771 adding 'indelpost/utilities.cpython-39-arm-linux-gnueabihf.so' 2022-09-20T20:01:15,709 adding 'indelpost/varaln.cpython-39-arm-linux-gnueabihf.so' 2022-09-20T20:01:16,338 adding 'indelpost/variant.cpython-39-arm-linux-gnueabihf.so' 2022-09-20T20:01:16,364 adding 'indelpost/version.py' 2022-09-20T20:01:16,371 adding 'indelpost-0.1.9.dist-info/LICENSE' 2022-09-20T20:01:16,374 adding 'indelpost-0.1.9.dist-info/METADATA' 2022-09-20T20:01:16,376 adding 'indelpost-0.1.9.dist-info/WHEEL' 2022-09-20T20:01:16,378 adding 'indelpost-0.1.9.dist-info/top_level.txt' 2022-09-20T20:01:16,381 adding 'indelpost-0.1.9.dist-info/RECORD' 2022-09-20T20:01:16,518 removing build/bdist.linux-armv7l/wheel 2022-09-20T20:01:16,958 Building wheel for indelpost (pyproject.toml): finished with status 'done' 2022-09-20T20:01:17,146 Created wheel for indelpost: filename=indelpost-0.1.9-cp39-cp39-linux_armv7l.whl size=3736846 sha256=4dc987d13c4f72a7a1d4bf6131048ff12c85ae931613d223aa2fc4d11fea4a14 2022-09-20T20:01:17,148 Stored in directory: /tmp/pip-ephem-wheel-cache-2k2m0rvq/wheels/35/c3/70/c05c8872f7149935c81b830f23035a7d2e5ceeb20ae059662b 2022-09-20T20:01:17,175 Successfully built indelpost 2022-09-20T20:01:17,429 Removed build tracker: '/tmp/pip-build-tracker-nw87yhvm'