2022-09-21T23:19:04,508 Created temporary directory: /tmp/pip-ephem-wheel-cache-hd9lc3bv 2022-09-21T23:19:04,514 Created temporary directory: /tmp/pip-build-tracker-3lih6cr2 2022-09-21T23:19:04,514 Initialized build tracking at /tmp/pip-build-tracker-3lih6cr2 2022-09-21T23:19:04,515 Created build tracker: /tmp/pip-build-tracker-3lih6cr2 2022-09-21T23:19:04,515 Entered build tracker: /tmp/pip-build-tracker-3lih6cr2 2022-09-21T23:19:04,516 Created temporary directory: /tmp/pip-wheel-zgkcjubk 2022-09-21T23:19:04,591 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-09-21T23:19:04,600 2 location(s) to search for versions of gemmi: 2022-09-21T23:19:04,600 * https://pypi.org/simple/gemmi/ 2022-09-21T23:19:04,600 * https://www.piwheels.org/simple/gemmi/ 2022-09-21T23:19:04,601 Fetching project page and analyzing links: https://pypi.org/simple/gemmi/ 2022-09-21T23:19:04,602 Getting page https://pypi.org/simple/gemmi/ 2022-09-21T23:19:04,605 Found index url 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https://files.pythonhosted.org/packages/88/8c/72cd48a1e89ad92f24e67d15545b9e3f478f256fb4729dbbb4985a0efe2f/gemmi-0.4.1-cp36-cp36m-win_amd64.whl#sha256=0e787ecd22313c52bfeae3408a3de06ec676e793822a245886bccfe5bd8cd79a (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,045 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/cb/84/0162cc2197241200740655ebe6cfd33342ddb152feca089f98aab91f56b0/gemmi-0.4.1-cp37-cp37m-win32.whl#sha256=f818934948b41087b9e2d1fb4a14db70c822f6cf153658a649d607d098d9bfd1 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,046 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0f/3a/c69ec458774b60d61a929ac2357d0b9c0a0b5187e55cdb75e138cefee2d3/gemmi-0.4.1-cp37-cp37m-win_amd64.whl#sha256=81d236d7ffe05be29cd3480c2821276337f661e6fcb0881c5e32c360b7be7378 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,046 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c2/a2/55410bfd6be3391475c2a005fcde251f843e0d117707dacb07bb880d2b21/gemmi-0.4.1-cp38-cp38-win32.whl#sha256=980c890ffc5034940e756a887670406939f3a95ce60493ab98cd8f2e4f2d7830 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,047 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/93/a4/361f66459b444340a29c1dbeb81918dccfab580f92752571a361b53c80fe/gemmi-0.4.1-cp38-cp38-win_amd64.whl#sha256=28de811e9a1c142a311cb4ed52f367788d9911de9cd17ad84566afae1ce97b15 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,047 Found link https://files.pythonhosted.org/packages/2f/d5/4ca93e1691bd8cb2d1e06ce4ff816eca300aa4e09416caf45bbb6451f013/gemmi-0.4.1.tar.gz#sha256=65f36f61e1b88913ab697bfb846553e15398ca27fac952a1d386a5d15779951b (from https://pypi.org/simple/gemmi/), version: 0.4.1 2022-09-21T23:19:05,048 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/22/03/599bf3752327fdbc408133daf5d6a7b950d72c4d81f20d8d3b2d8e95be85/gemmi-0.4.2-cp27-cp27m-manylinux2010_x86_64.whl#sha256=2c3fe451e560f0cb316f425afa8f95ad0138c5e14baf15bad8add3b16a002820 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,049 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c4/aa/f03b573d7333211fda34ad2c7dddbb4b7310fcf9caf7e938318208819049/gemmi-0.4.2-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=f7faad54418319bc8ff1b7e5b1cb4f4cbac4653f4edf528e911f040f5c9ce012 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,049 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/34/eb/d55b627cd8cb0f9bd3fc076afdd8b3b999316d6c4c24b6b703b97730ffab/gemmi-0.4.2-cp35-cp35m-manylinux2010_x86_64.whl#sha256=65d303507bbedb01265a59e33f9c087957fbcffe240366a802e240fa032eca1c (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,050 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/da/6a/fe1a65806633ea2129507b0f8b4034afdbf383e474a12152839ee50a52eb/gemmi-0.4.2-cp36-cp36m-manylinux2010_x86_64.whl#sha256=09fd610301a230cb7890f2d7f6dd7ae98ead9bc59f3fc37790f8a95dd4017eac (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,050 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/10/59/a4976acb0891bc600c161f08c341666daf419885f07a105e335e1aeeecb7/gemmi-0.4.2-cp36-cp36m-win32.whl#sha256=7143c3b674f428a420ac13d72fb0d327e3c842f014e2dac1fcf18453d3671d6f (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,051 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/bd/f9/0e3c3e3cbb2116fa23a1fe815542a971a5775cd7ada9d02ffd5d58fcde85/gemmi-0.4.2-cp36-cp36m-win_amd64.whl#sha256=326b19d2fb0b8714f6a4631b3e0e2283b11424936cb994d0a330d6a70cc56986 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,051 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f3/95/85635908935957b4ccc1700dafdcd0c309e00a4a3291aa7a8d6c65a5f089/gemmi-0.4.2-cp37-cp37m-manylinux2010_x86_64.whl#sha256=d61e759f705dc2fd16c94947550a258668ec6e2d4085addac6dc5d746f308149 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,052 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/bf/5e/2dcb2454003be5505eb7a75b5eecde74486d2a1bea2f189fc30c749076e6/gemmi-0.4.2-cp37-cp37m-win32.whl#sha256=e9eecdc0afdf6d05b0b668462fc45f48c32dcb22a153e6138ffd590dc220b957 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,052 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/3c/8d/055161b661f3dcebbd1cfa3c55ba02ab7f434d87147481b3566080a4ccac/gemmi-0.4.2-cp37-cp37m-win_amd64.whl#sha256=18a9f24cca2ad93f5feec70abe64eb75c1547509e4530898e4b5566696ad26a1 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,053 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ce/82/a45cb30c350b56f4dc628986b84b91310b88e1b2ac73ae3b37c3a1ac8585/gemmi-0.4.2-cp38-cp38-manylinux2010_x86_64.whl#sha256=c922d52b726ee554dfcbe8e01af11bb32b2ddbd9d6377ceb7db836b5bf2b15b5 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,053 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/9a/39/784a739b8d83175667ef1cc85a53acbe79b9437292031225b3ed552bc035/gemmi-0.4.2-cp38-cp38-win32.whl#sha256=5b586c704add91aa59ca14cf7f03142512e9785329b42a8cb9007453548511e9 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,054 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5b/62/8911a99982bc95e629f41a7096f0f907cf4b001ed6c0087e0a2763c943e1/gemmi-0.4.2-cp38-cp38-win_amd64.whl#sha256=06c0efb154804fab1c74c816bde974089e0653fb58c8f3c0ad9795e7c5678217 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,054 Skipping link: No binaries permitted for gemmi: 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https://files.pythonhosted.org/packages/b7/cf/5a9f3534db7e32658104b69e8a631c4fcf9a4bff7b8d38dca572bb6ed5d7/gemmi-0.4.3-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=27b97d8d1e5d1490d51a39c07ebc7640dd29b35b058bacb06db9b4ab21b0c118 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,057 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d4/8b/c55499a4d0d2a155c4c4ce220a2a942f0026909f4ec849609fc6688eb5a4/gemmi-0.4.3-cp35-cp35m-manylinux2010_x86_64.whl#sha256=182acd66e655a5cd5efd233e4baa0e1c153e8e15053767d2b3e6b5776f57176b (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,057 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c3/c4/d3239cd44ce93e14454e2f6596a723f5245776fe822238ac0473ef6d81d4/gemmi-0.4.3-cp36-cp36m-manylinux2010_x86_64.whl#sha256=4875dd21b03ce53882a4569978d0c7f4db1f9984605721989da6836835a24ff6 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,058 Skipping link: No binaries permitted 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https://files.pythonhosted.org/packages/5a/c9/e78fbd8a8d48f13c9da4e6afc4941bbf40142e6423d487335f8fcf46e2db/gemmi-0.4.3-cp37-cp37m-win32.whl#sha256=5940874fbbc5dbf350789d03e91ba10ed902ad9d3321030a524337e437c8409c (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,060 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/9e/6e/0ab2f8a07c42a54d6e6fda65549ff13a081c94601f084f795a380a8f14d2/gemmi-0.4.3-cp37-cp37m-win_amd64.whl#sha256=40b926cfc1e03963c4d19455dccce11daf9350b1ac54210608b24936e25bb833 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,061 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/dd/43/aa263331953f26ee8cf573129576a87252c4667686b04280e2e2d46a1ef7/gemmi-0.4.3-cp38-cp38-manylinux2010_x86_64.whl#sha256=533c17851d4f2d9d5207cfe8b97de9e7fd42bbf95995e9ee5044c6ce59daae6d (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,061 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ad/37/dd827724ae053469469c4dc3f050b5b16093195fa50030a202a593fb380a/gemmi-0.4.3-cp38-cp38-win32.whl#sha256=9b13da898e62666249251a358f10087ffdac2bcf8734bb1780b54fda263babc8 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,062 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/cd/15/4460162edf9aea5c568b6fbdf2b55536800b32e639064db8fb112c779edf/gemmi-0.4.3-cp38-cp38-win_amd64.whl#sha256=e70501c35e56ec6dafd8a2d64d74a3e5cf32fc87c5934d5ca68ad077bb0fe042 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,062 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4d/35/e8b97d567e27090876330931af7a5f097aed5387067718a25a9d4225ff82/gemmi-0.4.3-cp39-cp39-manylinux2010_x86_64.whl#sha256=f2b50d47148bb02c0cade07d936c27efd56aa192b871cbd05c50e815f0f5189c (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,063 Found link https://files.pythonhosted.org/packages/b7/6b/b4c5c2c12da58813f2478fdffac17d86aaf46c570b6f8b42eef9778d8180/gemmi-0.4.3.tar.gz#sha256=dd1f9d3b5ae06593f15e3093db5a41e6d4609307888ed3b25388087eae7ad9d3 (from https://pypi.org/simple/gemmi/), version: 0.4.3 2022-09-21T23:19:05,064 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7a/88/e074befd61f9abbc617edd24283bf642869882c023b2da5cf78bbbe8b967/gemmi-0.4.4-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=06ac6acad283b6d6181c337cc9cbd24ab4ad745b51da2e55ed1ef6973d0b5af9 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,064 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/74/f0/47da82d4ba10f1d15a212d74c9d712158b994bde8115f9d6d01f5c4ebe6f/gemmi-0.4.4-cp27-cp27m-manylinux2010_i686.whl#sha256=8a18033708701fa6c866fef000142a2e2ae14246a8995308d0369e3c13fe65fa (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,065 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/1f/b6/28f2a87d7e189fe9604897e13fd05a881a7933d7d293fc04efdbc6ad436b/gemmi-0.4.4-cp27-cp27m-manylinux2010_x86_64.whl#sha256=c68986b7542e8bd4047437fcf378e991ad90edeb6f89079d740225c994bc51dd (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,066 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/89/06/0c6eda981f85fb5f1633d19c8ce0cbd2d8fcf5677b5d563740241737ac90/gemmi-0.4.4-cp27-cp27mu-manylinux2010_i686.whl#sha256=98dff07c2c7815462abadbfc17fbe76d772e9e245fcef055d6288d03ffdb3c9f (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,066 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/bd/66/c696b84cab12dcc9c41f4d59eb767ed681359a0eafd331d9dfe5bab42b8c/gemmi-0.4.4-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=8d8c82d510af39a126b398da03fe4ca475329a253bbf03dfe09b59d78c5e34e9 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,067 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/1b/ed/d6745f20401fa9383ec0f166120c8f1d569795d5dc75601386e9811e587e/gemmi-0.4.4-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=d43f4e79bf7b9a069ac8874c243b64840c3311e19c0fa273ad24d136c84e045b (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,068 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/dc/18/0b5127d8f84979f371d588a323047483a22604eadb457ce9cee709895f29/gemmi-0.4.4-cp36-cp36m-manylinux2010_i686.whl#sha256=949eaec9199f5c503c997f91bcf1dd466e2ef6f1231367bf9c2a124d994e6226 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,068 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/6b/62/eea9c84d0e37df89b34c03b562522556419c080462c92eede3ccb9697625/gemmi-0.4.4-cp36-cp36m-manylinux2010_x86_64.whl#sha256=c53cba8d1391021ba4798991109659c10bedaf8ee81164fd8b13fb55a4d86a9f (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,069 Skipping link: No binaries 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gemmi: https://files.pythonhosted.org/packages/4c/68/832c4428629c200710b73ab360bbf3cbbe7bdff439618e06c136efb083a4/gemmi-0.4.4-cp37-cp37m-manylinux2010_i686.whl#sha256=0e10dfcbb8f357af4865cd9a4b7f8429ac955fc1ec13ab309fddcbafcca07b5f (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,071 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c5/02/b1edf3ca6e2bbc04d5bf9223ca53571a6dec25156b708bc4303352f4f8b1/gemmi-0.4.4-cp37-cp37m-manylinux2010_x86_64.whl#sha256=ccb6e07f90b7e7fdf60ad6785b1c1d00f40d08e8f017a892273f550498b8f4c2 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,072 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/13/2f/37bbe81cdad4ad391102f85f660dddc3b9c69a9babb79edf7a546bb00a34/gemmi-0.4.4-cp37-cp37m-win32.whl#sha256=805ceab04ae4a94fcdc6e6570eb43f62e31d8625e22178e6410ca91cd8b9154d (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,072 Skipping link: No binaries permitted for gemmi: 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binaries permitted for gemmi: https://files.pythonhosted.org/packages/93/bf/c3c250e76b72ececf8b9b4c46c5d53bf2f321a97137bda5c791061b2eb4d/gemmi-0.4.5-pp37-pypy37_pp73-win32.whl#sha256=9fd2954c6eb5b6612096bc315508a8bc79e03c84b924d4c68f8a3e82f635dbc3 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,098 Found link https://files.pythonhosted.org/packages/cb/de/3009e2c600cdface74bc3cd3a61abe573a1795494884caabce654f7d9b67/gemmi-0.4.5.tar.gz#sha256=3add3d4a24237b0d80499aea92d21d361aa1603a8fed01f076815321a2a1cf58 (from https://pypi.org/simple/gemmi/), version: 0.4.5 2022-09-21T23:19:05,098 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/93/fc/4278f6a11da18b4797458633032cb0a7e8babfd94e69285761ede60f972c/gemmi-0.4.6-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=083116a92e0fbfa4373de32be3e43e01ca1d1e6be86b7c6ef173c3ea553861b5 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,099 Skipping link: No binaries permitted for gemmi: 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https://files.pythonhosted.org/packages/ec/94/8d880d7694f846d9a480b504e4cc4f121055b001e6d2d9070102782bde74/gemmi-0.4.6-cp39-cp39-manylinux2010_x86_64.whl#sha256=39069e5abd4b44345c17008c6241f844c7c1fcf5240193f13dbd98d42e5c0b86 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,111 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/07/ef/2b5075478d09a0c9a688507124642f7e8a99d51d46c6a8dfffc9a9d9ff8a/gemmi-0.4.6-cp39-cp39-win32.whl#sha256=dde1b7a027fc4aeba200a746322a3d9cca4e26f0770498e521c085099c198b4f (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,112 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d1/92/fcae326c99c89b286efcba8cd0c95e125f6ba909c2550ab23ad1e8377cc0/gemmi-0.4.6-cp39-cp39-win_amd64.whl#sha256=c29e9dbb8fb7780a70fd54cc95858d3074f01edbaa3efffe6495d8cd094d4362 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,112 Skipping link: No binaries permitted for gemmi: 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binaries permitted for gemmi: https://files.pythonhosted.org/packages/11/c7/de6f582a7878895741ede91da2d7e4f104c72404cbc5d7bf56b1ae8be6e8/gemmi-0.4.8-pp37-pypy37_pp73-win32.whl#sha256=dad667a715e1199e728455f49cace41010632af00ef93af2eed854b99e61489a (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,149 Found link https://files.pythonhosted.org/packages/be/6f/e45033469acdf0b06ae8451488de7619952e889cc4a7deed73e3c6df3cec/gemmi-0.4.8.tar.gz#sha256=016450570841015b4be7239f43553e85a5812ab42e4cce30e3b88feec360297b (from https://pypi.org/simple/gemmi/), version: 0.4.8 2022-09-21T23:19:05,150 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/eb/d2/1c0f1fe6ae5eaca6f63b963e407f54424635e5e6d42874daedab3d65b59a/gemmi-0.4.9-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=d5a35e37cf254bfe4921c753dc30f712b9051788ec450dbbbc603a0e095e3bd7 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,150 Skipping link: No binaries permitted for gemmi: 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gemmi: https://files.pythonhosted.org/packages/91/c1/e3a3dda52195d2256e18deaeba42d1ff8870cc2c856f912e3d92d5286419/gemmi-0.4.9-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=8514d2d67d49953e646fd1e145ce869402e8125128de95194d6ed6bf4fbb86f2 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,152 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/91/86/7497f5f70a47af921e946978c282d41f6d6e48aa7cba7d9e48a91665674f/gemmi-0.4.9-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=11c1a8a1f8948a84773639f8a3956316016ac608cbc3d78acb3aa5be66b60a43 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,153 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d8/4b/12cda0c8a94cf6f5424ecb640e97e53bf3c9ed9bc714ecf6f5da73acf356/gemmi-0.4.9-cp36-cp36m-manylinux2010_i686.whl#sha256=401c14e0d45b78b568212346ca2136e47741de71dec8b035e2b5033abead8ae0 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,153 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/83/04/718cb69a3fac9baf5f2d3d7ecf9f5bfd0ce241b0fa26af9299109ed8c410/gemmi-0.4.9-cp36-cp36m-manylinux2010_x86_64.whl#sha256=697e50daedd05995e352dc3200c13802105648eae296c126bafa1f33d67d4e92 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,154 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d7/4e/c75b74e6e14d378611a40c04bc33f14a64d54cfe238abac87c519f6da989/gemmi-0.4.9-cp36-cp36m-win32.whl#sha256=cf9a024794b0143e3243e2bc71eb7b3a679c63630659191ac23a199a034c0369 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,154 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4e/cc/9dcb68b95ba7e63f98b26caf95511a798cb2b9cf5baabf9588137ecb5d17/gemmi-0.4.9-cp36-cp36m-win_amd64.whl#sha256=1366575429f2368d33398750bd9c5fb5be41d51c592c66665c795eec9c92dddf (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,155 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/69/dc/68794b8fd14366467c60faba4e10624eb1715c43aff5082938dd7b88ea79/gemmi-0.4.9-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=2e0a360c542857888fc366f62046b329261636cde80edbc19b6d5f0ad2d83863 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,155 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f4/70/52c43c2a25e9394b8e21681b1914e2d31c2f5cb5b8c072dff1aaa9448b28/gemmi-0.4.9-cp37-cp37m-manylinux2010_i686.whl#sha256=dd7a9942185154571f91b4f2bc706757601722ef7d60447f3ffaf46e81cd5dc5 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,156 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a9/dc/59a7a0c5c4f854f6e1adfce5699f1ebcfe6393632c218238a5a31fa0599f/gemmi-0.4.9-cp37-cp37m-manylinux2010_x86_64.whl#sha256=09f292a9409b29db9564fc9a43ea44b474ad5b3713285fbb10aa4620cb98efdd (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,156 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a2/cf/b3ac2fe6712a13eb3faa131256a79ac2d58a46add4912f09a029102fda67/gemmi-0.4.9-cp37-cp37m-win32.whl#sha256=f291c4bb2da17785b8387ff7001e8cf47ee9fcc4cc280cf477423e0dac508aef (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,157 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0b/79/a9f847512b292ba6a2718a87ac54090d9af14b7bf54ac874ff100122dd8f/gemmi-0.4.9-cp37-cp37m-win_amd64.whl#sha256=b71cf5041619f9b58571c451f4d3b48a0612cd4bd43b5b135f9c2a9ec0638bc8 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,157 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/3a/23/46a9343185dd2760a81553627971daea3d2af7e5762585b2234f111cefd6/gemmi-0.4.9-cp38-cp38-macosx_10_9_x86_64.whl#sha256=b9e6335aa3191164ab0225ff29fa57a73019a8b6c1cf3f93a614526da957bdc2 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,158 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e1/e1/d92de9990dd38683f20dba5974b7abff16748fe7dafe93693c9579ab64a3/gemmi-0.4.9-cp38-cp38-manylinux2010_i686.whl#sha256=0cc67ddbdf4d2f8db4a08c682f5bd180cf1d9d2af95fc460178d44cfd1f56f74 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,158 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4b/e7/f29a3313d0f0ebb7cb7f30157f5e72360811dfe3967e54d908156155086a/gemmi-0.4.9-cp38-cp38-manylinux2010_x86_64.whl#sha256=d7bf780c00febd2a94070676dd9768e6dfbc04beecb1c4b974fe7f815ab5cb95 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,159 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/50/c8/52ad765f76e715a19ecd1b05d6b2f61e3022037343fdd21ac596f8b61ef0/gemmi-0.4.9-cp38-cp38-win32.whl#sha256=975416e0a64dee3374b85def84025e197b4a3aeb07995644085a1b8c63488f25 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,159 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4d/2e/8a73d84362328ea3326470970f038a015a4dfd239c7416f66bcd09e945b6/gemmi-0.4.9-cp38-cp38-win_amd64.whl#sha256=156ffccc92cfb4e91162fec04233ea34f8805743ca30cdb02f03385904f8c230 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,160 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/fd/40/38935fe474a830829060f76364b181cb3530cc4e55f70eb5e703c2f35792/gemmi-0.4.9-cp39-cp39-macosx_10_9_x86_64.whl#sha256=91222254241a6f4902060de83af18187f9b9b5e2d2f0018fb0b71d34ea7fc977 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,160 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c1/60/bf7c8d55f0e01150736289648b9317afc8aaaaa341d2df736b88250aac1f/gemmi-0.4.9-cp39-cp39-manylinux2010_i686.whl#sha256=abdba8c7c038324d151b5cf0396486361a3be40cf175eec1fa480f7b3828664f (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,161 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/fd/bd/bccc8fc52bcb02fed07fc82e1fc76470397705048a3c6464f769d20964d1/gemmi-0.4.9-cp39-cp39-manylinux2010_x86_64.whl#sha256=dc9adc300f31cf721e11ba2b84840b9829edb702fc2960839c53009537b7458e (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,161 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d8/f4/8b77aaff5a83c69d45aa84dbe95df55a1f881b67792c63ada24a1cc3b787/gemmi-0.4.9-cp39-cp39-win32.whl#sha256=819ded41b98463ed6dfac06826cf07fa5063691610507bbbf428e720b1e23ff2 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,162 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/82/c8/81912349292efd57f8b418615c5f3d5989939a700fc1824ee0381c55cad7/gemmi-0.4.9-cp39-cp39-win_amd64.whl#sha256=c684fed655fd3d1a5d3a783da7307f47453c696314814824a5eda722c74d8ac3 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,162 Skipping link: No binaries permitted for gemmi: 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for gemmi: https://files.pythonhosted.org/packages/6c/57/ae1e113330952b2dd3e16054607347065c39635d5b0eef42f82706c4573e/gemmi-0.4.9-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=7eb54586c8b44806d20049b5d4a89432cd4b069f85e9d701d0c9beca0288d689 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,164 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c5/e8/5f9736f5c9eb35d4e7e46863ae1178edc03ff57969c4ec2b410442bf588d/gemmi-0.4.9-pp37-pypy37_pp73-manylinux2010_x86_64.whl#sha256=f33eb94a59135f8c8aa52ab61b7fcd2e12302cc7aea98a0b52f26287935e7cb8 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,165 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/2d/a2/8fa1006b4b71ffb6127c284aa6a3ab434aeee124724333f338d6b8b63019/gemmi-0.4.9-pp37-pypy37_pp73-win32.whl#sha256=822158ddf54bdb96d7af781821acf8260c3d6577994ccab899ba085482a4db9d (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,165 Found link 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2022-09-21T23:19:05,170 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/17/ad/7711a08353106486f32bae4f04cdd61e9d074cd6f4041529d32ca8733947/gemmi-0.5.0-cp310-cp310-musllinux_1_1_x86_64.whl#sha256=d9faf39e793d0344cc930ffb6eabeee5cd7f4c029371e033207cf4aff9fab093 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,171 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7b/90/839af23d8b9ad3fc3c8082013d31940de27508350b274e405a716cbd6c36/gemmi-0.5.0-cp310-cp310-win32.whl#sha256=bbcdbe1914b0efa935984d3b13729f4af4ffc004782715d9c70434b03ba85b73 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,171 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/80/0f/6f8136965ed4b67f0b63ae86263f5012e4e5fb98c9d45ae6664c38e5934f/gemmi-0.5.0-cp310-cp310-win_amd64.whl#sha256=3e31248ee3c6a214958714082acdccade495e50c3c6e1ce3695ed13b372a1ae3 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,172 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/89/3c/ff58df8fff8168a9a06e5f6ecd3f85e4047b8b4b1d53ae7f9b1f71d35b85/gemmi-0.5.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=97339b6d58da1a29b3d35babe0252890d41eba67d1023dc5af3b80c7f5738a70 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,172 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b6/1e/f77d398d0badef12f6717696b4781114fc8840413d03f5cd9ee6f867e212/gemmi-0.5.0-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl#sha256=752c0f488924e505855a394d3b3bacee0183249e368b5fafdb250e8ef55a6dda (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,173 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/2a/1e/5519dac06aa9d7c30e6402b54a11621abe66b796f2050c5f26be003cf3a2/gemmi-0.5.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=23d7df8665f6220b63c4099f6c3a2565f9245fb4c609100c95d050d7e8f7f21c (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,173 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4e/08/902a8302cd99b58450b9e7ab3f72c0f579bb6f142a491d2bb36792868e51/gemmi-0.5.0-cp36-cp36m-win32.whl#sha256=81897845af5eb788d52d25121c58423c3aa2598f007cf255ae56c3220dabf599 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,174 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b8/2d/f75ed6b935336247702844ce20b8c542d5d1f11938f04675c822d536ca54/gemmi-0.5.0-cp36-cp36m-win_amd64.whl#sha256=1d8f06fb5c9fd4b96ed0da24a42cb9ddab0d9b2659fa7816b67985883120311d (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,174 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/17/a7/92cc0e9a3c0ca7cb74cf4a9842a6ee8e73f889474f759316d15468ad756b/gemmi-0.5.0-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=b3aed59edc9552451607a08d23c67c18e162789b525e476492a92a5bb51b310e (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,175 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/be/77/d6b339d7fb4d03b99cb7348548308df8aa2083c036892cf1cd0348adc008/gemmi-0.5.0-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl#sha256=44f91ae802459c7c5bd4cc99352c14355183655b720467a7e531df173725c292 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,175 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/8e/de/de64b9614bc093414e201e41af48e62491033d02d54ca10518789f01bad9/gemmi-0.5.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=93f4442743fc58b9ddbe08adac701bc3336e4347415f84b386f2fa3549d3fa6a (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,176 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a9/ef/a8a518a29b43c417dfe8599b97ff8810a10f2ebb932cbc599d221ea05f34/gemmi-0.5.0-cp37-cp37m-win32.whl#sha256=7cbfde83c146dfb88eec9664770172be486fe5c6879b097ae30b92f0386abede (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,176 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/77/47/2c77c4f20424b8033cb19f9149b10f37248f6362bf6b8645470cd912ff9a/gemmi-0.5.0-cp37-cp37m-win_amd64.whl#sha256=43f6df2b5d037b428e8530f57e90bbca5bc57a7c0790ca110494e53c375da015 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,177 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/2b/6c/92cdf7e4a6e25d3e38fd9240de050dd0cd824732ae7b110286881767c7a2/gemmi-0.5.0-cp38-cp38-macosx_10_9_x86_64.whl#sha256=a7f8866ae8b309f869936e147ebdc5c3bda373751671842fdf308ea797faf835 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,177 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ea/0d/d2fdbd7c6b9b84769358c7e88fe97f3cbde12b3b6f5c177fd36a5cefcea4/gemmi-0.5.0-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl#sha256=164ac83737e8e935ff2d61d3beb6e7c6d5688f3337cb7a151569c1bb8c205a3d (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,178 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/2b/40/ba626feff2b321db0b80b31312142f8dc0da8706ea65eba09eb92c69fb52/gemmi-0.5.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=f890ca3614d1e51217e59a2ee839c104c32db669ea7315b6ba3e50ebe92274fc (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,178 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/8e/58/2e3530707625e09caf89244deb9759afc44a775a2fff6ba3a7bef82ea476/gemmi-0.5.0-cp38-cp38-musllinux_1_1_x86_64.whl#sha256=3e9e407aa6bbe67739cc55ae2797d56ebc913e95ddf42f86d51f93b7b6b4247c (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,179 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/8f/3d/2245c341a333ef8fa247e44237665150e6167f8ac2c63dd01f789bd72959/gemmi-0.5.0-cp38-cp38-win32.whl#sha256=0ace98e0e367de0a2bd17c4cda2546af68d4057ce1757b123bc8433aa514b9e4 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,179 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/3a/89/33e00d7d352fad174b8767c4b9e8538fb6f33021689a36ee3928ee9924bd/gemmi-0.5.0-cp38-cp38-win_amd64.whl#sha256=eee3d8815d4a38c7e99ca1f1a8747ae5ad3e23a8a46b92de3b402941a0ea58a3 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,180 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/87/d7/7dc338573b4b8181c10df98be95cdbeb0b4e6a93079096623222dd6aa3a8/gemmi-0.5.0-cp39-cp39-macosx_10_9_x86_64.whl#sha256=03344fb6b989e91694d0682e0f31fedadc39e2422fb72516ab80cacb701ddacb (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,180 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b9/1c/37636503b6acc4df72f7f2b8bb15941a44f129b0190a1f0abcdb561dda1a/gemmi-0.5.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl#sha256=34ee5ef163fccb9b720e36a24614bb824a373761a92f78f8f96ccf1e5f7cb662 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,181 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d5/95/61916884f56af3cc500a8029a478e45eb05a716574c71656304bfd3455ee/gemmi-0.5.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=0789966f6186bf4b05504b0d85ab069615078c5c4521c52d69beca22f88ad17d (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,181 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a0/64/03d57b7c76535f4d2e79bf36c405ae25619264e9b1d7f673b0d204f13bd3/gemmi-0.5.0-cp39-cp39-musllinux_1_1_x86_64.whl#sha256=128e36546eb3e418df79fa56516000b67710f84e8ea2871d766407b2a0d5372a (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,182 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/95/04/4e7b48d479213ee6907e50c42b568c789ff991e11a69c628595f24908d91/gemmi-0.5.0-cp39-cp39-win32.whl#sha256=3eb75e7bc45cfdd8a7a979f4ff5782351b56b124e75eaf3857417fecaf95ecdb (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,182 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d1/45/60bc4f0e73c1ed8c1071ccc74c3ae860b47d457ccdc9f930e0277482e3a6/gemmi-0.5.0-cp39-cp39-win_amd64.whl#sha256=f39db8cdfd3985063c7cee534952752edec09591770649f74b3b3907e6b61683 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,183 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/96/3c/66946187b011efb26cf735df9fcd1e6ae5a91cd4ddbe216beefc6be26172/gemmi-0.5.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=6b2cce102b79eefa4746997b61214e8f3e63b6ffd99543a712182ce1c8c8674c (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,183 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c5/a4/44932652e4acd0c04debcdd7115d1c5a087fc8e7477cdbbbf4f1ee771e74/gemmi-0.5.0-pp37-pypy37_pp73-manylinux_2_12_i686.manylinux2010_i686.whl#sha256=91dab30dc6596f08f65fc2205be17d5c1b39e22e8e8cec28eb28bd6f50dce45d (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,184 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c0/50/d2bd30b284932128864c0ba34e3a8cf0dc6d1c9b6dd44e081807a30927f3/gemmi-0.5.0-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=fa9bc743514f6bac4bcab7e883dc8ab619db787e1ae97700c9fe9f3db7e627d0 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,184 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a5/be/8da12fbe007e468ef7125affeb15375ea602ab22eed9d5197278356ae884/gemmi-0.5.0-pp37-pypy37_pp73-win_amd64.whl#sha256=f918915e31f78ef7ffa5cb35abd771b7767a7f701358af7fc9270508a0fcdcce (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,185 Found link https://files.pythonhosted.org/packages/76/6f/0f81a068de2ac6f7153b9590888c29247a3ca23d1b3e5f54e9aab3f90eda/gemmi-0.5.0.tar.gz#sha256=879f8b9170fe65b6ebbdba7b69d73141409254bb6ad8a8046590a7885d57fdd6 (from https://pypi.org/simple/gemmi/), version: 0.5.0 2022-09-21T23:19:05,186 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b9/5e/e7134f790fc3d419f478fa9ec5b234285878294745d74c2ba20807036cfc/gemmi-0.5.1-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=7b3822eb2189bc4709702724b409aac13d732f4dfe4aee9d01276cf41823c670 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,186 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/76/33/6a777f73f20ef9378ecbc89500246399e194c39e4cd3650159bcc747fb07/gemmi-0.5.1-cp27-cp27m-manylinux2010_x86_64.whl#sha256=b3c9e2b79df203103314aaf986209b16642157ba33826a344047b8ceaa300599 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,187 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c1/48/6ceac36a3900c03fd574a1a4640a376416eb1b0f5ea4839c16df2c1e82cc/gemmi-0.5.1-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=9c43c2b375d68e8a9feeec1ea649c3caae0a4078af8f4599a8003d9f4b1a520d (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,187 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/18/e8/4ebaa0e04865e4a3735025adc76eb0997235c0352e5e416be040c4fc1ab5/gemmi-0.5.1-cp310-cp310-macosx_10_9_x86_64.whl#sha256=f6e1ad1c3bbf1de0ba84996dc14012e778edddb4b3a5a0638495269bc6e8258d (from 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https://files.pythonhosted.org/packages/fa/70/de03b41043537110b431c090827318d40e987d2d76d45cc2b26568069a17/gemmi-0.5.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=f58e885278846ad937f5ef73998fdd319bfd75551c35321cc21e6fa86c57c1f5 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,191 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/35/f7/16e3e6bf9f587f9f1e628779cb91d64c4fc87b7a1bc39c516ccd12d43bf6/gemmi-0.5.1-cp36-cp36m-win_amd64.whl#sha256=14f049b20483ec7efe2855f3a542179073759586a8c98b8cdb3e0a29fadcbdc1 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,191 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/40/66/9253c3fc51382c7deb6a6d79789bce72eff84f664d7644c344dc8074a859/gemmi-0.5.1-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=bbeff7a9d7f50519d4db7aeb9b68c718d163706eb7c0712f101ac67461e619ff (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,192 Skipping link: No binaries 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link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/37/6d/3abe1d11e3d5412b83bbe1e6227ed14a4e609a199b14d84c877154004130/gemmi-0.5.1-cp38-cp38-macosx_11_0_arm64.whl#sha256=7e3f22fa0b65c4846bd997862c693b3ba2d0aab340798a2b8b53b65ae7ca0afd (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,194 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/42/a4/e50ec4ffbbb1e2fd754f9e580b75572a452b6f2ef6b3b6a517c479c43739/gemmi-0.5.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=c32fb0cffcfa81e33ce1088d242c4bf3125ff9e619362928d7b3abb8ebbf6495 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,194 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4c/dc/ba2300387d633bffacac2f6c9c0a68669602a15efe30b6e35dc9599685ea/gemmi-0.5.1-cp38-cp38-win_amd64.whl#sha256=0bc3ed83eddba358428e1eef2dc21bc4ebb3b368885500056d2b35ef8fcd581f (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,195 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/8b/78/dcabd5c547aa07eb130931089d810c21577ac7627a9b8f9a6cfc0a9db0f1/gemmi-0.5.1-cp39-cp39-macosx_10_9_x86_64.whl#sha256=f65cc04ae47aeec447a8a75159c8b968f2a4d49f71f7645c6f622185d5c46fec (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,195 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/04/da/6b9be38d955006a6dc09955cea0e6c3561b0dd3cab2d7102d25fb012d62a/gemmi-0.5.1-cp39-cp39-macosx_11_0_arm64.whl#sha256=1fea248b2a26270057185f39352c0462c5a4527713b201bc0579ba21256aafbc (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,196 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0b/b0/2b9efe6a849f9fe8ee450ba0f85b6298a68696c813dc33fe3a2cdf033aea/gemmi-0.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=f7a392b6e2ab1efd174c24a9f50dcb57bda3f1173987fa4d005f4c4669ac0847 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,196 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b4/5a/881dd10dda412b9f8c7610a2f588fb16c9f1ec22d88811f0bfd1a2bab0d5/gemmi-0.5.1-cp39-cp39-musllinux_1_1_x86_64.whl#sha256=0a261aa71fdec2a4db90b1058c40c5460a9b678fa8551f92be9fe99ee6494d0c (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,197 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/27/be/57ed099c9778f29bdfcb8496cb125d802cd8e1967fcbba3b2e029e06a900/gemmi-0.5.1-cp39-cp39-win_amd64.whl#sha256=f73ff58a34953454f8a28c05d48fcb912d72c2d92e0eb19510026a2d28818d63 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,197 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e4/1a/68c0cf47ccb39d4215b2756a4c547b99bc009233e9def8b911dad19f7523/gemmi-0.5.1-pp38-pypy38_pp73-macosx_10_9_x86_64.whl#sha256=61083281d14b5edd93c0a2e5cd7391bddae4bf7d7ec5b793b734b1f5800c2b82 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,198 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f3/8c/06f5b496a81040137b98886745477b7eee4edf4bd896d4123bb121fc1671/gemmi-0.5.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=c68a92ca259eff55886414102f150bac57195f596c0c11e737f562119265f2bb (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,198 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/50/cb/f2b6eed33269e437d6c1a6bb1398e1738f41b3e0ee4ff403e45d5e9f119a/gemmi-0.5.1-pp38-pypy38_pp73-win_amd64.whl#sha256=980c7971c6a447126f52efa87db7a17f2858b2aee279a10c4146633b7f45a69a (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,199 Found link https://files.pythonhosted.org/packages/57/65/5d3e560231481bf7c79a05d88230177e435eb4d1acdf59ccf42a716a0b02/gemmi-0.5.1.tar.gz#sha256=a641843b527cc9b083afdad619b420d5ef86e092f07209ec7b9555902dc3cec9 (from 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https://files.pythonhosted.org/packages/0e/59/c560957e0664136774ffe09cca069b2b0040bd8fa24b9452d9ae1bb98102/gemmi-0.5.2-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=800d912b896ca88ce8305e3710da6b89d6bb03b1cf578d2a26dde05ed0d901d2 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,201 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/81/a7/be0bab8a6ffc965c5ffe54fa58185e1292549592cfe2d3b591a96b7259cc/gemmi-0.5.2-cp310-cp310-macosx_10_9_x86_64.whl#sha256=a387683a2314284b7f74892b1d575ca07f2fb602e7666b4577a144be106aca6b (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,201 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b3/9d/bc42166366a086933cf70c4225c71ba8c138798a865c95a0ccecbc8c933f/gemmi-0.5.2-cp310-cp310-macosx_11_0_arm64.whl#sha256=97d435936c0f7984d6d7fb5e7ecb4ff40e4e23d8895e6fd854c9276f9190a965 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,202 Skipping link: No binaries permitted 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link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d9/47/646295105e51c0022c0dc5adf2b3a6497f73e802bf741cc45b1ca5b45e65/gemmi-0.5.2-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=2e00a467988116317590e3386e023b95fea2b818925ef3e215ee874c0e61e793 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,204 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b0/34/aa506ceccf8aad40def7f7de57e4a17384aff3ae311dca7e89a10ea9a8d1/gemmi-0.5.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=a6d379500ea84cc859f98a17b433b65a2fba713b2d54c7728a7d5c467f7aa036 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,204 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/3c/7a/6832c9ec110fa92d49c83b29a20a7c639bd20748a711b6743fa5cfd125dd/gemmi-0.5.2-cp36-cp36m-win_amd64.whl#sha256=e8692bf7bf8cc2670a09725bd7be6a4907655717064210fd2fb08d44326746e5 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,205 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/be/15/dd9a5b7a3e7e98254ce1c991d759777c7e4e2b8b7d277e7ddbb280ed5745/gemmi-0.5.2-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=6ecae79a339224261efe4e725a1430c50e28fa46705ff1c0072880da1f471693 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,206 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/12/aa/527a757195dc72187c0ff83bf131dcf0038bf0c2e3a603a38d7fa4215527/gemmi-0.5.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=0a57df69c04d2eaf08837158d79ec07711756f8e5de241425ef8c7478fcc1654 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,206 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/00/fa/9f13049567db238c9d54878057964a2bbbe6487eaa44e0dfe43f91499001/gemmi-0.5.2-cp37-cp37m-win_amd64.whl#sha256=869b2908a59608350cb54b4faed4d505155d91ca1a9006b1422c988db45550d3 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,206 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a5/5d/3b545003aa183963308071286e02eabc505dc916d6fd5345a9da1016cb1c/gemmi-0.5.2-cp38-cp38-macosx_10_9_x86_64.whl#sha256=0ac8d0d0614883b79759cf3792dfc433579940dc4a48d27a59785d2f1de1dce8 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,207 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/68/aa/471b25c35d0766820ad2c2a910929082964d2d5cbc5b2792cffcbf2eb32f/gemmi-0.5.2-cp38-cp38-macosx_11_0_arm64.whl#sha256=fd9d6e45838149fba8172715b89c59a5e35105e37f9c261801b914444cb0697f (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,208 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f1/20/470fdeca31ccfda56451c19ecb2e620c16bc1070b2b9ec7d405f1fb01b27/gemmi-0.5.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=60bf19ea531e5fde2015a40e25a2b860661aac17e79e7fa7c34baa8699390e47 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,208 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c4/94/672d0881ddddebac8df9a459002b78bd0b7063f7354f05bbb72f86449d7e/gemmi-0.5.2-cp38-cp38-win_amd64.whl#sha256=ba9ce716deee6828518fd114b8b01a2ac7d076a1001c4fd602d7a89f81ac437f (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,209 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/80/49/accc59e5cc1fe68d24b74fe6e861d050dc84bbda02fe1c1766401179c4b2/gemmi-0.5.2-cp39-cp39-macosx_10_9_x86_64.whl#sha256=6e7f514e027007ca1f4daff147550649f24799f259b202e890da9428085fbe68 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,209 Skipping link: No binaries 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Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/77/3e/1bb0e7f54832a84d703740394e4e88ee8a63807930bfe36dcd2e61e18b70/gemmi-0.5.2-cp39-cp39-win_amd64.whl#sha256=1b7d94dcf09e3e4b94396ac28f56cf3c9535a61567416bfca50f0545249ea156 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,211 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/c5/bf/05d6199ebd6b4a78d89f7ab4679ac525ff245db1310b35fdceeed72268c5/gemmi-0.5.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl#sha256=91757740d63407890f00efbc2fc2b88dbecd53d354bab0e98b9b14ad08c25534 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,212 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/96/e3/46432303490b40a1db81cecac60777c45469bddf13af36e0364a8b73e98b/gemmi-0.5.2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=1cc03be0dcbf6f43714278d82c76107351489a6a50bacb6963ab2447450bb5b2 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,212 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e2/e4/d8552659c51352812ed8eaea7c7036cd1d6816c4129521bba271342dad71/gemmi-0.5.2-pp38-pypy38_pp73-win_amd64.whl#sha256=ef5db04c653aebc481dbeaf4d84535ffb387537ae1b37e836f5241d5f41ef8b9 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,213 Found link https://files.pythonhosted.org/packages/05/d2/7cbd2c8ed64f30098ca929426c4581947d3a307657ad383897c6d426c352/gemmi-0.5.2.tar.gz#sha256=7d3ea23e2c09440be7c99141d82f14421404293631d1113b248c857bc843a422 (from https://pypi.org/simple/gemmi/), version: 0.5.2 2022-09-21T23:19:05,213 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/55/e4/aaf93cf945278e8eafe401c439a3fa0f9872fe1403adb3615cfd98b2eeff/gemmi-0.5.3-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=4f6cd242a10302fc32f4a73ee8a2fb3874e688ec9818f956fedc593b22ab94c5 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,214 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ac/0b/8e99c7eb4b831b9fa748d4a1c51691017c4c74960c992f45a04093df0314/gemmi-0.5.3-cp27-cp27m-manylinux2010_x86_64.whl#sha256=443ccb4405c726eae09d0fdc785091e423c3163c57d062e027858b9630072aeb (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,214 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0f/b6/7e643460394a2463d6be493e111742e597dbcc9d1b85471e2cd2d7ceea77/gemmi-0.5.3-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=b7cf57e9833fc4eb15c93e0e50588c68b642c62b7ad785cc32d9a795f7be56ac (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,215 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/85/05/75c929884c6e1a3ea06e664261167ebd8ecab191439c2bfcfffb3018f3cb/gemmi-0.5.3-cp310-cp310-macosx_10_9_x86_64.whl#sha256=81cb4b7ce8444539d0970029a9966aa4eaf265bc46a7c184ec3b34483402c6a2 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,215 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e9/97/af6260feae87f042b55acaedd39c65c1fe63ce68d23d282888d91a6f066c/gemmi-0.5.3-cp310-cp310-macosx_11_0_arm64.whl#sha256=3e04fee606861be5c96eaef0be26d2c7368a68927492beb856e00cfb659a55d9 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,216 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/3e/63/bd2f2fa6fa6843537c4af7794e6d09bceb88461f3b6c03dea202c7cb5bc1/gemmi-0.5.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=a7fb62952f2c3910ae338f65f07655c7174cf03ac8cf3bdec33c7d9746b6411a (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,216 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d5/ec/bb184260b935967bb7e05f02a369ce12bb1c5ceac1376da6b567f17e0d9f/gemmi-0.5.3-cp310-cp310-musllinux_1_1_x86_64.whl#sha256=bd3eaa7b17dac4ea54fa30aa0ee6f7dbed93093c3b135527f336250b913db61f (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,217 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b3/b3/5c8739dc4b97a085259caa681178227ba459f239653afb39a40b18e3f78d/gemmi-0.5.3-cp310-cp310-win_amd64.whl#sha256=33639eb401aaf82153d3bee9d77a19f5e85061f48c5d6eb735eb6714b552424e (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,217 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b9/6a/15269ce5647809592e78d29ebe0e8cc35e637b57cdd51afd508642292ee1/gemmi-0.5.3-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=6857ebdf23ad010d369f4db83402a20fe4802d29fa59502f17789a8b94f92dd9 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,218 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/60/55/12a973e951b309941ffb88ea6310918613f9690e7958637b623d067915f4/gemmi-0.5.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=c5658745611712352affd28f31574c870af26dea8bb28d05821a649f6537187e (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,218 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ea/a9/ac222c95a7727c7779caa8befaa46c55d78f5f7fbe9c1bee699004c3f414/gemmi-0.5.3-cp36-cp36m-win_amd64.whl#sha256=0ea5ac51c2793cc1618c322504a7ed396c8f8754c60134b9ee5f8cbcb2f90966 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,219 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d6/58/f2d460de3646c007fc4037f3a35e22fc415aa0e58d8d1f43927a022fae1f/gemmi-0.5.3-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=01e9e7b364005245cff713cf61d08345eadecda7a95e80e1e4b90c88b8301b0f (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,219 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/64/05/a9daa5301eaaa48e7791db8d62cbc2a69181908ed3d6f3aec73019884097/gemmi-0.5.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=32f2693206a01b497e05d4c7d8ed00f070c3caead2542523fa24cae5db079783 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,220 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ef/1d/07b0ff9f29974b8862afda122a573c9cde0d7a076179c8b6eb8e9fbc11fe/gemmi-0.5.3-cp37-cp37m-win_amd64.whl#sha256=568019bd8afa1466554489d1c1cd53025e8b02cb3392deec41896045d900452b (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,221 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/27/7e/c78766eca9aa7ff1e0cfc5513b60c22d34d7791c215cc6c4cbea70c7a571/gemmi-0.5.3-cp38-cp38-macosx_10_9_x86_64.whl#sha256=748cbda4bd19ef2ef0132c4f7edfb54eb2341a979f01f95af0b03a1e70ddb224 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,221 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5d/d7/41e2e4f53d2391fd50fe5da1b0bf61cc2411dda9ad0113137753cd5498ee/gemmi-0.5.3-cp38-cp38-macosx_11_0_arm64.whl#sha256=3dbebab0b5a56893f612bd2d070ea58cc3d93329a66559513382b56445c745aa (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,221 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d2/01/d09bdd5e6d0b40c3193eb628c048119a0778053a68836679d7f24000e7f1/gemmi-0.5.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=69be6012018d4916f3b9bd86ff3fd21198ac9871b34b285a3891bfc879085da5 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,222 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5f/f1/01ea751ada8a3665c06c19f7a2c0b3902735ad44c329c1dd0bc2d54181ad/gemmi-0.5.3-cp38-cp38-win_amd64.whl#sha256=5bf257f4e2d3c33e51313d2af69af69964ea392faaad9481480b56dc0b394808 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,222 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/62/0b/e7bdec1e4649cf3063c561781ce0c6952c3f088bdb903c6d6b2d4d114736/gemmi-0.5.3-cp39-cp39-macosx_10_9_x86_64.whl#sha256=1e1ea12ae2624843cfe3b88b9f444854b4d17a1bac6df0b686b2f949b3c741d7 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,223 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/86/3c/16781083dc69d625181527455f69d8e3fd953cff5ddbb12fca049cf284ba/gemmi-0.5.3-cp39-cp39-macosx_11_0_arm64.whl#sha256=3a95d0c1f6f8302429c0c344421881f21d173c535c6890b8b3be18adf328f1b2 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,224 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/20/c8/cc9d7cb994b98cd594952fdd297897ded30d9626b7200322cd8bff2f72cd/gemmi-0.5.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=243561849ba0e7391044babef1c3978bb05b39e87b9efcc672f5b61c097e3b6e (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,224 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/60/64/9581c9bdf168eb3e20271277d4f03c0f41ad32f9e4a660f5bb3052cb65e7/gemmi-0.5.3-cp39-cp39-musllinux_1_1_x86_64.whl#sha256=8db539c39ba154986b7e54b6cff7c28709c37720b8688d07e913394326992db4 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,225 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/18/e0/752a99fc9677f351e1d491d8e91f5e20ddb4a3a16c584132d14051529149/gemmi-0.5.3-cp39-cp39-win_amd64.whl#sha256=6acb0741cfc1d40c79266f530b23921722ad5e0f91befb467ba6ed2b2ea3a8b3 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,225 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/76/4f/57e247a7435cb18a1c07c9d5f0b47025ede0d54cef7e51ca1f7c9054aa44/gemmi-0.5.3-pp38-pypy38_pp73-macosx_10_9_x86_64.whl#sha256=94604114cb1191ec7f675742c3a73ea63d6beb7ada43d370d923e1331e5417e1 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,226 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/9c/c0/27d20d226b9e1bf664d3fa5ed997ad6743dc4fe55551b8e44939c360e5f2/gemmi-0.5.3-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=8435831512d876a73bf34d6bb131ed6ce6c8d68d6a070025b41715f4b26ddcee (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,226 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/fa/3d/667bfc38478d2cef712c4e8069484fb240c7cbe02cb6c6a623e7b3dafd7b/gemmi-0.5.3-pp38-pypy38_pp73-win_amd64.whl#sha256=7a0efcb772297f1b008ec60946ec0f79ebd2bcb8569d14d64cb57a5cdcecc98e (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,227 Found link https://files.pythonhosted.org/packages/da/a5/9b9db3e78655c1dbaf3b23c583e198887d7a1c24f8ebfcaf7b71bf09567b/gemmi-0.5.3.tar.gz#sha256=647974d32f170b92718b26f547df288b45f054c22e782826b9f009520be2e492 (from https://pypi.org/simple/gemmi/), version: 0.5.3 2022-09-21T23:19:05,227 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ea/16/9cdb5f325927d94675187cce48d3f9d70a69801a0f0c0b9b9a5812335932/gemmi-0.5.4-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=9f486b9433d3af2a765dfc1f021a760ed5006498c40286a3a2b072ee4f3fd976 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,228 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/34/22/280fbec5a23dbcc5657925137f5dd0568b9d1f13b55c82db21c0689cc528/gemmi-0.5.4-cp27-cp27m-manylinux2010_x86_64.whl#sha256=608580c86ce47d4be47b4ef4510d5c527d1a57dc84e73e8b3de2d27c4236c434 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,228 Skipping link: No binaries permitted for gemmi: 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link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a8/6e/0bcd81331a8b50c56414d97ffd917364c563777c443714667e39e7b02f83/gemmi-0.5.4-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=2b243ae1a410407ec5b44acb970cb520d3f5ab073e1739a41c1bf2951a6eb335 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,232 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/3d/b6/f337087726e77a4e60be19c67c44cea3daed83ba53729bcec15ab8275b1c/gemmi-0.5.4-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=1f591cf70b694df4a6cb4658b3f8d60ad910a88e0d45d40b557f0bd2c247ef51 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,232 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/47/5a/570914192298919f5000ec857127d4f3128eaacbe336a12478002410be99/gemmi-0.5.4-cp36-cp36m-win_amd64.whl#sha256=269fbbd1c7ff3dc29e72786e5d5703d61be596a1281ea164a15bfa6f6f8ba8d1 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,233 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/6e/40/9b2f5eb45200eed97427e0a3355f81e01cdcd020017fef5962e10b37a822/gemmi-0.5.4-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=00251c5cf2b888d4ad8e81b40ecb018396027227219b32a59ad2d334e156643f (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,233 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ba/63/be97c983f4d05eb9834c63bc2af12ff079c91ca9e5704deadf6185470ab4/gemmi-0.5.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=135d2f530d7ae1a31509689321ad2396f0937bbdf247c728529483921e7d8571 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,234 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/dd/a5/9b9833335b38730e20103557d943896c983406df688e48b3b1d5756af918/gemmi-0.5.4-cp37-cp37m-win_amd64.whl#sha256=28a91f76e6357d8c9ec6af40ee3c32c2f93e3a0a9b1dc37937482c696f36b70d (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,234 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/58/91/2b84026b4633850b732d24eb42ea90d205a665db0634f08d6f9729a975a2/gemmi-0.5.4-cp38-cp38-macosx_10_9_x86_64.whl#sha256=4810856da9a770a4f889579f11b58685f85c770dcd25a7b6ed125ed89df0b03d (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,235 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/9a/27/00586c50ea1c77d56f5b4bd32b3c8ca51761613bbdd4ab4828449321638c/gemmi-0.5.4-cp38-cp38-macosx_11_0_arm64.whl#sha256=16635366b0992a7c7bf087453214e5f8cf0bf11fa48ded65666620ac88f75b7a (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,235 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4c/e4/27e116fbf2eea2606cc29d3e12f9bee397f36739a33e7cd673b0b60e55a9/gemmi-0.5.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=429c6003828f7c06aab8b6be36007961117e46ebbedc61c27e7dcb4d4303d47d (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,236 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/85/e7/e3b59e8f3832dc8368de486fa527b8653a9123c1646d72dde64bd483f2c6/gemmi-0.5.4-cp38-cp38-win_amd64.whl#sha256=9efe4e9bff7bdea39220c8051f606d43d121191e8dba1a51ffa0a351833bdc83 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,236 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/17/19/9135d06fdc0b4794326c0f020a658b053c9ceec94ecf272233e3de503129/gemmi-0.5.4-cp39-cp39-macosx_10_9_x86_64.whl#sha256=3827c9cf26f5e2786a1b5f6c796d67caad1125a73922fe27f6fba0ea13213239 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,237 Skipping link: No binaries 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Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f4/ef/9dbe8ef4d72224b1f768f15597bc7d63a92e45bf167e13c8ebf5c759c6e2/gemmi-0.5.4-cp39-cp39-win_amd64.whl#sha256=0bc59d9181c7ebe670e05da874e814db34e3bc10588a94676252807dc58363f4 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,239 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/18/d0/1a6f551b957e99b87b2a69c04142cc12484158ad9e97782f8c7f3cfe6347/gemmi-0.5.4-pp39-pypy39_pp73-macosx_10_9_x86_64.whl#sha256=e51114a86e3319ad287ddc5fe2cfaca02de77be244dce2cafe8cb0d6565b3d0f (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,239 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/42/4f/c0814113c10a1bef981ccc9d58e68c21994cc05f9cc524b51c38066fd914/gemmi-0.5.4-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=fa7e956eda09aa5eef9515fb4b45b9b1c0d067f5ec3ca3d52a9550859988e19b (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,240 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d7/52/561df927c23e6f12a3315946d41936240b3f1059bdacaf56c738c5c69bb3/gemmi-0.5.4-pp39-pypy39_pp73-win_amd64.whl#sha256=00bf10b7911fa5543662d4fe02422dee259f0c2e1b32948818139765d361abb0 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,241 Found link https://files.pythonhosted.org/packages/f8/17/fd072a26394bbb01c9562b0090fc9282e5ca208364754b36cf30153b52e9/gemmi-0.5.4.tar.gz#sha256=51161f139ef73997309c09179e4055c8ffcfd96fcc1509f8a569ed198ff0665d (from https://pypi.org/simple/gemmi/), version: 0.5.4 2022-09-21T23:19:05,241 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ea/33/cf906ce011ccfca79c5704d4cf5691e5c2be9dffa46f159e2f792fd7f056/gemmi-0.5.5-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=580be00a2960fcd480d025fa303815f1a6472caec82dd633185d5393b7e1957e (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,242 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d2/9f/8d5439e37ad8337904a303d2d5a02027b1eacc6684449e0a19f9992d90b3/gemmi-0.5.5-cp27-cp27m-manylinux2010_x86_64.whl#sha256=1aa07813a4923a8584693588d6ef0659e65cdce904afcbdf5a3c7bdbae0d10d5 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,242 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/77/d2/1531afc7535decb6b7bebbb74524ca3d4c716bb7f3a7570f0acc1a91cc34/gemmi-0.5.5-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=375a2186eac898952ec55dfcac3155b78d085aa3831c2bdb2b5ab460e3e41dd6 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,243 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/b8/3a/a6ecf3270090f874239f38287a3eda4e7fdb071bb7e24774a23207b76c73/gemmi-0.5.5-cp310-cp310-macosx_10_9_x86_64.whl#sha256=e5f90bffa8e21152864792e6742e74a2a2d61eca36824c60f34f0a86236e09eb (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,243 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f8/cf/83ca23cd819854187169b6a474a5c4df6e9334762c9021ec0303f7d51765/gemmi-0.5.5-cp310-cp310-macosx_11_0_arm64.whl#sha256=8b2357bc869b3f5d08c1609439e11c3fc9cde47494ba97916344f8b3099a84a2 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,244 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7c/26/7c5607f1b6231d1efd5607badd3bb4cf2d944444bd1b377420af5194c9a7/gemmi-0.5.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=6044d20ca396e4b4d52c8b1b4937cdea74befe510711f1469f117fbc7c0401f2 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,244 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/18/88/c16708d525a708babfb5221aa8fd42905692fda86349f4374a102c80b57e/gemmi-0.5.5-cp310-cp310-musllinux_1_1_x86_64.whl#sha256=ba4931c91be35e817494dc5fbd8446d93b0f645c7b279c887c135bbf4ae72856 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,245 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e9/95/cb33484a637c67e71cedd9be10d4dda406babf21f56497c5a1221e16d1f6/gemmi-0.5.5-cp310-cp310-win_amd64.whl#sha256=553ba5df9a5b8d5764585618bc13eb7d3abb8e789a2e24048401a84bd1d82697 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,245 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/2f/a3/641e5b5fa5bd5a3cfcaea7ee3bda4b09c62c25bc9a4d9721f45b0959164f/gemmi-0.5.5-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=17e772712167173bb7be9fa87df41980224e1227f7898d6968b26a41c47f627d (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,246 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5c/39/e809c957ba1fe10ff61af42f87b84c00f8cbaaa894db076763c9a1838fcf/gemmi-0.5.5-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=715ec4b70ab24fc08e3a55a5606048c733005be5f6c91c5bc68b13a0d9f78650 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,246 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/da/50/24ab02b6a771c88127e7c414e516aa71f76db1f04abd7c9491769c61e0ae/gemmi-0.5.5-cp36-cp36m-win_amd64.whl#sha256=516b409aa176928f72c244b8faf5d0fff424f2a7f9d9ce3781162afbb9ebf8be (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,247 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/48/9e/383f0ff461bfc73d4a00604d2a64c69443ce5e108f54eead7502d5935709/gemmi-0.5.5-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=29e92b0f9ddfddf2b252200978b8d7cf4339e989cb39e4f313afd3402efd7a72 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,247 Skipping link: No binaries 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link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0b/50/db3c022a134b7ff00b94fbfda112985fee3d030345ecd499d0aefad9f472/gemmi-0.5.5-cp38-cp38-macosx_11_0_arm64.whl#sha256=c12e8805798be2a0e65d159a7400ee449fa2568d9c631cfa89418d99107d838c (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,249 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f1/64/715370a8abc99de51024107b1ea899d7cd15e0721331e61b61d950771767/gemmi-0.5.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=e0bde97c4aabadca50e6a713023e88f1a724c3d37eef7d83c8386197d00d0b8e (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,250 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/70/7e/000c77c1494a3b7b2b301b9234da30fec8ea78b5392617804cf3c4c1138b/gemmi-0.5.5-cp38-cp38-win_amd64.whl#sha256=59a1a2039aa87409a9f6822c7373055c804b62e6612c9b3de53a56e1f3298b05 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,250 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/8e/64/5955e1602cc634e8e125f41a726a029bb75a7f4164783c79a4f174e52064/gemmi-0.5.5-cp39-cp39-macosx_10_9_x86_64.whl#sha256=69b14de3c62a97350c9f0b11b074378d354869813c78f8efb128dcf86020df17 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,251 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/80/c0/78d31a28e549358964a3e1e2f289e0e1a228a123329efaccff0cc9df3362/gemmi-0.5.5-cp39-cp39-macosx_11_0_arm64.whl#sha256=4d3521efd8e84dbf69a4cd38d9d51671ca4d3c285ab160d46dfdbece1789b292 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,251 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/af/ce/b6ffb1e4c451d0998f7a4723aea2423ff2f200098985ea8bcc0bca1a7e8b/gemmi-0.5.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=ff88cd82663d155aa53da526cfa5f74ab611a59561fe6a445fd059ab67859aee (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,252 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f8/cb/0bcde9adb9e6f2aca5a4c713da9472be061148f5f9f5f7429136f5d52572/gemmi-0.5.5-cp39-cp39-musllinux_1_1_x86_64.whl#sha256=fbb2ee9b8335bea2970b4a6a68fc4a19d4356564b6be0ff11770622d71396d21 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,252 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/56/4a/61fa7c56fc1c9995a26f34ba33b7e784e5f29ec438f10436c389d34969d6/gemmi-0.5.5-cp39-cp39-win_amd64.whl#sha256=c2fe0bfab494ba2cb201aee0e4382d981e00dd411b13b21d9c0263f80faf10e7 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,253 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/7b/64/5e4a17a96753ac6b446b2d845b5347402d3752a4a2c6a6911d48f2ee7341/gemmi-0.5.5-pp39-pypy39_pp73-macosx_10_9_x86_64.whl#sha256=a1a9e74519349e11e6971a3a8c35ba84ea8b2b007a906c9ae7cccc5469f78760 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binaries permitted for gemmi: https://files.pythonhosted.org/packages/4a/4f/dd9cf3831a90318629ff6e9975f93bc98d8b25aa8c1be3cc362339596801/gemmi-0.5.6-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=fc45e966e83f60726b7ea8dd6c7fdcecb5c1af6b64eaa674ab29dcf0e19f9c69 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,258 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/46/dc/b7c19dd6604a45ec54d12cf560cfadcf135cd2fac5557cd7a67b181d9c7a/gemmi-0.5.6-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=14fc51201b3df193007ece5cc284342fc076194fb6c9531ad2f7413f05aca435 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,259 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/19/a0/4cd0c72f67d1a44b5b6466a8abdcf2ee84d75d81a9e4b8c240c7c24b15e5/gemmi-0.5.6-cp36-cp36m-win_amd64.whl#sha256=78e0598545f20737c4f455668baecbcacf414af383c5b23c52056e702c1d28ba (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,259 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d2/63/ca5211bfb39c1934ed40b723be97dd7efed2e50a3f56b667720e306625f2/gemmi-0.5.6-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=53c71c68f76de62e14fb15d34977a51fea7a49ab875c05866db6a7979a8fb2f4 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,260 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a3/99/c454fb9a6657d21f4de67c15bb48a5158bb28b707c1bd0c402fc25695718/gemmi-0.5.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=be667cf331d242d86f99a2ab87a0f3c641a56e371ab533a3d1554a0990d8e006 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,260 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/5a/18/9dd0ca3ac0a13038edd29bb9859dad1b49e9f7bac582641a362ceb2fdaca/gemmi-0.5.6-cp37-cp37m-win_amd64.whl#sha256=d4360ade1f929f1b435c8dae0f70b7317255e921ec6f0562b7a88233ef0a115b (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,261 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/ba/01/394943328a4c6f484f66351902135e2108a3edfd8a836bee77d8527dedf6/gemmi-0.5.6-cp38-cp38-macosx_10_9_x86_64.whl#sha256=3f2f97057601641acaf29013bbfc75ceb88f1acf42edc54cbd6fbe209c1cbb40 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,261 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/bd/06/7a11f069d4e0e0de718e958b4dec13ff06b2e61b9ed636fb872b2874f750/gemmi-0.5.6-cp38-cp38-macosx_11_0_arm64.whl#sha256=e50235740f4e4c2a19e6003a20ca910a13b8b5afb31e4d642741b540c7d40c02 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,262 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/25/f4/02932d6055588ab3aa7a993bedcc49697f661804cba1fe84d5413be94044/gemmi-0.5.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=e932f1dda85ea7033d79600a8c992c94d9b8616d04ac684294731f73d533882c (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,262 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4e/ef/f64bc4e49cb6ee6937aa3b0227465519eda3c256fa0534f427793fdfaddc/gemmi-0.5.6-cp38-cp38-win_amd64.whl#sha256=df9a8f7dbeae938604f9f4281f685274c7e51eb8646845924c8e4411f277221d (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,262 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e8/6e/8c79ba89f1f40510864f001434183bbe249842254a774c2f44a4d39f624e/gemmi-0.5.6-cp39-cp39-macosx_10_9_x86_64.whl#sha256=f6ab14af0c3cbf387ffa534c1d6d709ba49ef3e7b29a0ec57cb2898865f8a937 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,263 Skipping link: No binaries 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Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f4/12/288c6857358ddb6c4b9a71cc4b9b730ad52c3e8fbdd37b17a937879a7133/gemmi-0.5.6-cp39-cp39-win_amd64.whl#sha256=f5cd352c4cdb316e7c742f28b9a30f0c997f115e1f389234874e820ae177c3f5 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,265 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/60/55/fa99c74e8003f77bcf0575601231a35ec692e745b97e8e0635fe79535128/gemmi-0.5.6-pp39-pypy39_pp73-macosx_10_9_x86_64.whl#sha256=254d5febea7aea466bf7b44391416e85c9fd1ddb256cf18a23492c7036c2cfd8 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,266 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/a0/74/ab723bc4e967a1bc60bf3a246ce1069c6215e5e6f20c45ea111bc2ea11e2/gemmi-0.5.6-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=fdaeb48621fa0cdaec16f4120f52cbbda0f1db82eff48d16b416026208f2549b (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,266 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/18/e2/037d85e2bc942e71df33b36e5551271853fdc5fe727fcc70e02405470b22/gemmi-0.5.6-pp39-pypy39_pp73-win_amd64.whl#sha256=776b8c895519e58a529fe5f41e1c524eb1a7e5ce7dcb9e85fc467c56b4f00c9a (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,267 Found link https://files.pythonhosted.org/packages/d8/b9/f34297a0a44be48553a7fee2c2cb3cdae9ba629b91755becd130fcd1a4d7/gemmi-0.5.6.tar.gz#sha256=31fa209917583b9d7f42463c4803c739eec0ba4ceef074eed92d4db993aaa8ba (from https://pypi.org/simple/gemmi/), version: 0.5.6 2022-09-21T23:19:05,267 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/07/4d/15b3312e17b104ef2de349d509543a43a4f02f9f9fa24764651f3e715083/gemmi-0.5.7-cp310-cp310-macosx_10_9_x86_64.whl#sha256=ccd7f9f520b546079783afcaa43df5ce53e5bcb041c49a1efcd42dff868f3f1c (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,268 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/fc/aa/d5204b40f378e5c6ba1ba0c8cde26d17fb2f449998330bff40e77e108749/gemmi-0.5.7-cp310-cp310-macosx_11_0_arm64.whl#sha256=434a737bda29121cf95362c238cc098cd9ff030aecb0756b63c30d9f48b032b2 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,268 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e5/61/bdf291633f75e932583c842ab93bdfe0c0fe71bafb578264c66a91fe9207/gemmi-0.5.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=3e97497904eac501e7097a3c9513e50dd9c46388f522510c218738f2fe72a61d (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,269 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/82/eb/473841e07a0589795175c7a39c26bf8dbe9d9649aa4ac9f954e656fb5f43/gemmi-0.5.7-cp310-cp310-musllinux_1_1_x86_64.whl#sha256=330e2efaa93f4b57a37c4969deea273cb17087c142259cdcb6e79bb8db8d18b7 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,269 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/1f/81/6d7c394103240c5483fab560c1833ca928ac4363b371aeda6ec8beb3c548/gemmi-0.5.7-cp310-cp310-win_amd64.whl#sha256=2d368682c770a48d69714a1e1610a6230de4f1bbc87a830ca88f641543c7d57f (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,270 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d7/2f/45ff904208c88487dd29b5b917ef89d497526d8807a46a1158353dbb8964/gemmi-0.5.7-cp311-cp311-macosx_10_9_x86_64.whl#sha256=f52eb35d782a92acb43e75a38078331759808ae53da31c5e9754c9de143af969 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,270 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/72/fc/0e7b14dfa36821e5489c94f1007ef283681f9c08cbcd3a087cc0de2e1371/gemmi-0.5.7-cp311-cp311-macosx_11_0_arm64.whl#sha256=22592ac0abb257a53608ff21fd5dcdffff1f2fcbee0a8b2cc1ffd3510d420199 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,271 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/cf/2b/73c8d2e66c6efb52437e9b752b2364788fb041d443bc23dcee92ea01323c/gemmi-0.5.7-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=eb15241f2de15ccc2928f6c6bfcb93aa58e8871759e0dd97c31ba225d8515f58 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,271 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e7/f7/699371413dde01c3775ddb9a9606c64d22e202f707a158b8b7999a5c36e9/gemmi-0.5.7-cp311-cp311-win_amd64.whl#sha256=4d6dfd83180442ea76dad74e9a13be6d9b7d03149823a3b3be4c5519fc05edf0 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,272 Skipping link: No binaries permitted for gemmi: 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Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/0e/4b/ec697a9dc25567987c188f007403de25cbcd7bebdf01d5d76f889101168d/gemmi-0.5.7-cp38-cp38-win_amd64.whl#sha256=f35549dd0dad182aa740ca3e71a18341c42103b8095f3e17676a876cc3c1747f (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,275 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/d2/3e/d4a38d1df34cd653ebc3f969a87e83096c1cadee26b67aebb62efb197fa2/gemmi-0.5.7-cp39-cp39-macosx_10_9_x86_64.whl#sha256=1248ab4e8c4023e0b28bd79745a211b72fb311ea66479ec11fe10fd6c57f0b59 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,276 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/1b/fd/7a55214ae1697d99e1477d5ca3cf1193ee12ce43474dbf92314d5a0fe8ec/gemmi-0.5.7-cp39-cp39-macosx_11_0_arm64.whl#sha256=27bb00d59f1ec803f4ceb21d95ac3d788f65644696fd9f7f2973f3a5188df08d (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,276 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/4e/d5/3a20c4cfaaae5918c3188c2078aeed251268abf46879af21632cea267dbf/gemmi-0.5.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=66955a6748f63f0eeb1b7026babdb96b84c362575079d27a08eb74cb4fbb5223 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,277 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/e2/bf/6a8458470e18fadb53fe916f30de33c796b25d69b85c43a725792a8a7f56/gemmi-0.5.7-cp39-cp39-win_amd64.whl#sha256=84df025241148d37bd910b43fb72257f1d35db32599dc9c94547ef3c4d55fe20 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,277 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/24/ad/7c9adbe2642836b0c115816e9ba841317f667f7aab2493c2a76a9435e2b0/gemmi-0.5.7-pp39-pypy39_pp73-macosx_10_9_x86_64.whl#sha256=d39185a678faf2cc5186d65f54f2f5d917d57c202fb14789ee58b98421c070de (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,278 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/f5/ff/9244d4f389985d2034e7a3c35020d832c794dc38d5fb7513cd681472ef5d/gemmi-0.5.7-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=7423022d90d2f6df5bfd1577bad3c559e7423448513c1c83b2b4b531ca90dc2a (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,278 Skipping link: No binaries permitted for gemmi: https://files.pythonhosted.org/packages/40/80/c819325effcebc0e34d0f050707c0fabf7a302738752f62155d1c6d5dd43/gemmi-0.5.7-pp39-pypy39_pp73-win_amd64.whl#sha256=c7fa614327f0310ef8450a22fa6b425987fa401293ca6ae03a718248feee4919 (from https://pypi.org/simple/gemmi/) 2022-09-21T23:19:05,279 Found link https://files.pythonhosted.org/packages/f6/b7/183942691786c635166851be162c76b53c80323daa801d818718c6b0eec9/gemmi-0.5.7.tar.gz#sha256=daeceeadbe192a900f92e42bb9850246cb187adf29e305eb1cf308be62ea7b8d (from https://pypi.org/simple/gemmi/), version: 0.5.7 2022-09-21T23:19:05,280 Fetching project page and analyzing links: https://www.piwheels.org/simple/gemmi/ 2022-09-21T23:19:05,281 Getting page https://www.piwheels.org/simple/gemmi/ 2022-09-21T23:19:05,283 Found index url https://www.piwheels.org/simple 2022-09-21T23:19:05,586 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.7-cp37-cp37m-linux_armv7l.whl#sha256=7eb6942c6a99792aef64cd0ff72c80fc34933edcf90125fdee4ca2377d579a81 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,587 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.7-cp37-cp37m-linux_armv6l.whl#sha256=7eb6942c6a99792aef64cd0ff72c80fc34933edcf90125fdee4ca2377d579a81 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,587 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.6-cp39-cp39-linux_armv7l.whl#sha256=afda5bc299b811242039c9ddf9865fe0cf50d5147ad8dcdb467cfc6e2ef9e3b5 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,588 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.6-cp39-cp39-linux_armv6l.whl#sha256=afda5bc299b811242039c9ddf9865fe0cf50d5147ad8dcdb467cfc6e2ef9e3b5 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,589 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.6-cp37-cp37m-linux_armv7l.whl#sha256=ebf3d9e652706444fc456143c2ad74f470a8ac3d1548b471f071a83e8d14813c (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,589 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.6-cp37-cp37m-linux_armv6l.whl#sha256=ebf3d9e652706444fc456143c2ad74f470a8ac3d1548b471f071a83e8d14813c (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,590 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.5-cp39-cp39-linux_armv7l.whl#sha256=8009bd6c9ff05ba855d46259b0947b0f0b036af556d8f91f974c1a5a3c511f27 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,590 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.5-cp39-cp39-linux_armv6l.whl#sha256=8009bd6c9ff05ba855d46259b0947b0f0b036af556d8f91f974c1a5a3c511f27 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,591 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.5-cp37-cp37m-linux_armv7l.whl#sha256=7d5744c3c52e1d39f8a5ec841e7dd6993c2c710b9990d05a737c5fbf3554529b (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,591 Skipping link: No binaries permitted for gemmi: 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2022-09-21T23:19:05,593 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.4-cp39-cp39-linux_armv6l.whl#sha256=8ab06aa6ca1fb18e3b1725004277581551891aa0ceb007c9242dbdc61e331efc (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,594 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.4-cp37-cp37m-linux_armv7l.whl#sha256=27b200335951702bf05693af7a25b892d2704bd363bc95737a707a532b46c3ae (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,594 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.4-cp37-cp37m-linux_armv6l.whl#sha256=27b200335951702bf05693af7a25b892d2704bd363bc95737a707a532b46c3ae (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,595 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.4-cp35-cp35m-linux_armv7l.whl#sha256=f46e8a1c4f10da497acf531e385d07d5a1e7f6c1a76997c637a870fbd5cb1186 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,595 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.4-cp35-cp35m-linux_armv6l.whl#sha256=f46e8a1c4f10da497acf531e385d07d5a1e7f6c1a76997c637a870fbd5cb1186 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,596 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.3-cp39-cp39-linux_armv7l.whl#sha256=4d79c93b856f3b4200b588538f01b84178ece304019da3b03e6de8287b6d311a (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,596 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.3-cp39-cp39-linux_armv6l.whl#sha256=4d79c93b856f3b4200b588538f01b84178ece304019da3b03e6de8287b6d311a (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,597 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.3-cp37-cp37m-linux_armv7l.whl#sha256=3d8916944c98ec93f9bd59c9a383b4a1791583710d7476df8199f3ea86bbadb9 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,597 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.3-cp37-cp37m-linux_armv6l.whl#sha256=3d8916944c98ec93f9bd59c9a383b4a1791583710d7476df8199f3ea86bbadb9 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,598 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.3-cp35-cp35m-linux_armv7l.whl#sha256=42608213f8d38a4be9ba49609e10c980eefb7b6b1931a6f8f8b43772f5e7e408 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,598 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.3-cp35-cp35m-linux_armv6l.whl#sha256=42608213f8d38a4be9ba49609e10c980eefb7b6b1931a6f8f8b43772f5e7e408 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,599 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.2-cp39-cp39-linux_armv7l.whl#sha256=a916f9b8f3aa33b7aaf544ac67c897653368dc30ecc72943055e5fcadbdd8bac (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,599 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.2-cp39-cp39-linux_armv6l.whl#sha256=a916f9b8f3aa33b7aaf544ac67c897653368dc30ecc72943055e5fcadbdd8bac (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,600 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.2-cp37-cp37m-linux_armv7l.whl#sha256=052489f96e150b422dcff47059295f7a84a7fcfd4b952e18ad3b5f6e898a2e12 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,600 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.2-cp37-cp37m-linux_armv6l.whl#sha256=052489f96e150b422dcff47059295f7a84a7fcfd4b952e18ad3b5f6e898a2e12 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,601 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.2-cp35-cp35m-linux_armv7l.whl#sha256=6d1686cb8f3ae7494b27622f42808bf47a9fe6525ea9e9fc3cdd74071df0b367 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,601 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.2-cp35-cp35m-linux_armv6l.whl#sha256=6d1686cb8f3ae7494b27622f42808bf47a9fe6525ea9e9fc3cdd74071df0b367 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,602 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.1-cp39-cp39-linux_armv7l.whl#sha256=bd75da08aefacc09b12aa6af459b5bb72108130848a8fcaa74f6c6c4effb1568 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,602 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.1-cp39-cp39-linux_armv6l.whl#sha256=bd75da08aefacc09b12aa6af459b5bb72108130848a8fcaa74f6c6c4effb1568 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,603 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.1-cp37-cp37m-linux_armv7l.whl#sha256=b1ca40b2288b65a09170f6292ab50465a750d540905601aede8ebe627161b37d (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,603 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.1-cp37-cp37m-linux_armv6l.whl#sha256=b1ca40b2288b65a09170f6292ab50465a750d540905601aede8ebe627161b37d (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,604 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.1-cp35-cp35m-linux_armv7l.whl#sha256=b3c34bc9a9dd3f01dadf85b11a711c6f605d3cc9dbe55f93d07513a9a4200cb3 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,604 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.1-cp35-cp35m-linux_armv6l.whl#sha256=b3c34bc9a9dd3f01dadf85b11a711c6f605d3cc9dbe55f93d07513a9a4200cb3 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,605 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.0-cp39-cp39-linux_armv7l.whl#sha256=b87b079626f3ac98837abdd64cf589fd2d38c5c5c2eff8a04edba74493c76db9 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,605 Skipping link: No binaries permitted for gemmi: 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2022-09-21T23:19:05,607 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.5.0-cp35-cp35m-linux_armv6l.whl#sha256=495e32466beb8e1ae74c7f50d1f004945eabb979d5fdaf1f4a3ea000dcb96bf8 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,608 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.9-cp39-cp39-linux_armv7l.whl#sha256=fd76139e419765029a4c1ccf388ddeb9cb6bd76c9f29e539e75520e9f0c47796 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,608 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.9-cp39-cp39-linux_armv6l.whl#sha256=fd76139e419765029a4c1ccf388ddeb9cb6bd76c9f29e539e75520e9f0c47796 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,609 Skipping link: No binaries permitted for gemmi: 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2022-09-21T23:19:05,611 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.8-cp39-cp39-linux_armv7l.whl#sha256=8cfb068becef1e8ce10a4cc8438544d203310a3a03519be5e1e89bde640015c1 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,611 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.8-cp39-cp39-linux_armv6l.whl#sha256=8cfb068becef1e8ce10a4cc8438544d203310a3a03519be5e1e89bde640015c1 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,612 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.8-cp37-cp37m-linux_armv7l.whl#sha256=969c981d811b123de397da46d72c3343995b102a311ac19bd74ef621148b4307 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,612 Skipping link: No binaries permitted for gemmi: 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2022-09-21T23:19:05,614 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.7-cp39-cp39-linux_armv6l.whl#sha256=1d714c066088eb5213521e5096864257db64599979fc1064ebfbe7302199a2c6 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,615 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.7-cp37-cp37m-linux_armv7l.whl#sha256=581b43842fd2da1beebaa4df1a87066041fb5902883a519626d81ddc6fa2469a (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,615 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.7-cp37-cp37m-linux_armv6l.whl#sha256=581b43842fd2da1beebaa4df1a87066041fb5902883a519626d81ddc6fa2469a (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,616 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.7-cp35-cp35m-linux_armv7l.whl#sha256=b53875d6708aaf3f3b6315fbe1e72ef76c4215760d09635673e9b6e5f54df3e5 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,616 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.7-cp35-cp35m-linux_armv6l.whl#sha256=b53875d6708aaf3f3b6315fbe1e72ef76c4215760d09635673e9b6e5f54df3e5 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,617 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.6-cp39-cp39-linux_armv7l.whl#sha256=7d46a4fdcea047d9b8637a04813935beb5e5da741bceb0a1d690a7839080a40a (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,617 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.6-cp39-cp39-linux_armv6l.whl#sha256=7d46a4fdcea047d9b8637a04813935beb5e5da741bceb0a1d690a7839080a40a (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,618 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.6-cp37-cp37m-linux_armv7l.whl#sha256=df534bcd0117e11f2e4a2f83c4a05ff2fa9d29d35f7525550808ebacd7f443bb (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,618 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.6-cp37-cp37m-linux_armv6l.whl#sha256=df534bcd0117e11f2e4a2f83c4a05ff2fa9d29d35f7525550808ebacd7f443bb (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,619 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.6-cp35-cp35m-linux_armv7l.whl#sha256=cd4a41dc4421d9c0691772d8f2168bb365e517ac7217cb052d6713bbccc5305e (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,619 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.6-cp35-cp35m-linux_armv6l.whl#sha256=cd4a41dc4421d9c0691772d8f2168bb365e517ac7217cb052d6713bbccc5305e (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,620 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.5-cp39-cp39-linux_armv7l.whl#sha256=7a71f294832617a72c2b09f4eb56f68efa939808bb13d315d255d45d4fe72b16 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,620 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.5-cp39-cp39-linux_armv6l.whl#sha256=7a71f294832617a72c2b09f4eb56f68efa939808bb13d315d255d45d4fe72b16 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,621 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.5-cp37-cp37m-linux_armv7l.whl#sha256=d38028f376b07cd6b0230bb58a4c19d5ba837b899cd8ab6640341ddbe00eaf1a (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,621 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.5-cp37-cp37m-linux_armv6l.whl#sha256=d38028f376b07cd6b0230bb58a4c19d5ba837b899cd8ab6640341ddbe00eaf1a (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,622 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.5-cp35-cp35m-linux_armv7l.whl#sha256=6442245c6774979b47c4e06491b89130ca4a49e4ccbe21dab88a9c62b66c774f (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,622 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.5-cp35-cp35m-linux_armv6l.whl#sha256=6442245c6774979b47c4e06491b89130ca4a49e4ccbe21dab88a9c62b66c774f (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,623 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.4-cp39-cp39-linux_armv7l.whl#sha256=ecb1d58813e479b6b68b682e7ad8914e31dd13b3b301dd7204a52e89ff165e0b (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,623 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.4-cp39-cp39-linux_armv6l.whl#sha256=ecb1d58813e479b6b68b682e7ad8914e31dd13b3b301dd7204a52e89ff165e0b (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,624 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.4-cp37-cp37m-linux_armv7l.whl#sha256=f902d886318bef1f63084c8abf048708dcfc1bdf639d67c16f070410c29e12db (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,624 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.4-cp37-cp37m-linux_armv6l.whl#sha256=f902d886318bef1f63084c8abf048708dcfc1bdf639d67c16f070410c29e12db (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,625 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.4-cp35-cp35m-linux_armv7l.whl#sha256=d74009113ee2e6167359cfc898acf95ba4a712e96633181a090ff7c93925f5ce (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,625 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.4-cp35-cp35m-linux_armv6l.whl#sha256=d74009113ee2e6167359cfc898acf95ba4a712e96633181a090ff7c93925f5ce (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,626 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.3-cp39-cp39-linux_armv7l.whl#sha256=6d883f4bfcb7f363631a83f8067c8e0bd98d076ff2b69b0cb1792f543139c256 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,626 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.3-cp39-cp39-linux_armv6l.whl#sha256=6d883f4bfcb7f363631a83f8067c8e0bd98d076ff2b69b0cb1792f543139c256 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,627 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.3-cp37-cp37m-linux_armv7l.whl#sha256=7f334e1ca8c5bca7889987ae1c54c4cfaf43efeb04c4283e5b7344efe680c5e0 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,627 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.3-cp37-cp37m-linux_armv6l.whl#sha256=7f334e1ca8c5bca7889987ae1c54c4cfaf43efeb04c4283e5b7344efe680c5e0 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,628 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.3-cp35-cp35m-linux_armv7l.whl#sha256=b2677502c3949c461c4e6b1f2dca53fc07af03da210f8aaa0b1cb868cefbf662 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,628 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.4.3-cp35-cp35m-linux_armv6l.whl#sha256=b2677502c3949c461c4e6b1f2dca53fc07af03da210f8aaa0b1cb868cefbf662 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,629 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.7-cp39-cp39-linux_armv7l.whl#sha256=d18908fbee345739936f350997077c40e37e833fe6d7d1321687b24a37f65eda (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,629 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.7-cp39-cp39-linux_armv6l.whl#sha256=d18908fbee345739936f350997077c40e37e833fe6d7d1321687b24a37f65eda (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,630 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.4-cp39-cp39-linux_armv7l.whl#sha256=46bbb0f09c704cd8ab8011fad111e08a607fd5f064fa0041f56ec1c62b8e74c6 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,630 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.4-cp39-cp39-linux_armv6l.whl#sha256=46bbb0f09c704cd8ab8011fad111e08a607fd5f064fa0041f56ec1c62b8e74c6 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,631 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.2-cp39-cp39-linux_armv7l.whl#sha256=39a8c7fb3ec3f9763f6805693416f2c075f33692d8523980a858d067fe9c69e9 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,631 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.2-cp39-cp39-linux_armv6l.whl#sha256=39a8c7fb3ec3f9763f6805693416f2c075f33692d8523980a858d067fe9c69e9 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,632 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.1-cp39-cp39-linux_armv7l.whl#sha256=8645b322266bef190cd2cc053a0943d9bb5b400f493ae0a4fb479dbcc4180950 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,632 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.1-cp39-cp39-linux_armv6l.whl#sha256=8645b322266bef190cd2cc053a0943d9bb5b400f493ae0a4fb479dbcc4180950 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,633 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.0-cp39-cp39-linux_armv7l.whl#sha256=0fa0e00dda8349e934da9b378af10d708d0f1474244d39b834fb6b5424ce357f (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,633 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.2.0-cp39-cp39-linux_armv6l.whl#sha256=0fa0e00dda8349e934da9b378af10d708d0f1474244d39b834fb6b5424ce357f (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,634 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.6-cp39-cp39-linux_armv7l.whl#sha256=23b75d17c30e0c453b94a79caab48a631c94404b92d2416a8acdf91ecb68c329 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,634 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.6-cp39-cp39-linux_armv6l.whl#sha256=23b75d17c30e0c453b94a79caab48a631c94404b92d2416a8acdf91ecb68c329 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,635 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.6-cp35-cp35m-linux_armv6l.whl#sha256=77f0f92c7f827784be41462b3969ebc0ad0b49796c999503f2633c2f476a18de (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,635 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.6-cp35-cp35m-linux_armv7l.whl#sha256=77f0f92c7f827784be41462b3969ebc0ad0b49796c999503f2633c2f476a18de (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,636 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.5-cp39-cp39-linux_armv7l.whl#sha256=c8b98718817bb2bce5cae6905eec804b07e480eb6a77265fa85c5fe8e3a759dc (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,636 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.5-cp39-cp39-linux_armv6l.whl#sha256=c8b98718817bb2bce5cae6905eec804b07e480eb6a77265fa85c5fe8e3a759dc (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,637 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.5-cp35-cp35m-linux_armv7l.whl#sha256=22b6cb0c5699f26be92623b5d8bd5e48c4252e647379c9259837689a13f069b8 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,637 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.5-cp35-cp35m-linux_armv6l.whl#sha256=22b6cb0c5699f26be92623b5d8bd5e48c4252e647379c9259837689a13f069b8 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,638 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.4-cp39-cp39-linux_armv7l.whl#sha256=f7084d7d7c2387e74a7745b09eb5311a55cd2d8effa42e3234b63173cac6ed4d (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,638 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.4-cp39-cp39-linux_armv6l.whl#sha256=f7084d7d7c2387e74a7745b09eb5311a55cd2d8effa42e3234b63173cac6ed4d (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,639 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.3-cp35-cp35m-linux_armv6l.whl#sha256=43cdde23b2327d4232b8dc272394d07e1ef9244fa065cd3a5098a832b7de5ec6 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,639 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.3-cp35-cp35m-linux_armv7l.whl#sha256=43cdde23b2327d4232b8dc272394d07e1ef9244fa065cd3a5098a832b7de5ec6 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,640 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.2-cp35-cp35m-linux_armv7l.whl#sha256=a6d8bd66cc25d6b9604268b1b1602fd3e3128f5bd756f797d117b79de41bbaa3 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,640 Skipping link: No binaries permitted for gemmi: https://www.piwheels.org/simple/gemmi/gemmi-0.1.2-cp35-cp35m-linux_armv6l.whl#sha256=a6d8bd66cc25d6b9604268b1b1602fd3e3128f5bd756f797d117b79de41bbaa3 (from https://www.piwheels.org/simple/gemmi/) 2022-09-21T23:19:05,641 Skipping link: not a file: https://www.piwheels.org/simple/gemmi/ 2022-09-21T23:19:05,641 Skipping link: not a file: https://pypi.org/simple/gemmi/ 2022-09-21T23:19:05,700 Given no hashes to check 1 links for project 'gemmi': discarding no candidates 2022-09-21T23:19:05,743 Collecting gemmi==0.5.7 2022-09-21T23:19:05,747 Created temporary directory: /tmp/pip-unpack-hv727ycd 2022-09-21T23:19:05,841 Downloading gemmi-0.5.7.tar.gz (707 kB) 2022-09-21T23:19:07,517 Added gemmi==0.5.7 from https://files.pythonhosted.org/packages/f6/b7/183942691786c635166851be162c76b53c80323daa801d818718c6b0eec9/gemmi-0.5.7.tar.gz#sha256=daeceeadbe192a900f92e42bb9850246cb187adf29e305eb1cf308be62ea7b8d to build tracker '/tmp/pip-build-tracker-3lih6cr2' 2022-09-21T23:19:07,520 Running setup.py (path:/tmp/pip-wheel-zgkcjubk/gemmi_d07046740bac489e9d8384b9cf595300/setup.py) egg_info for package gemmi 2022-09-21T23:19:07,521 Created temporary directory: /tmp/pip-pip-egg-info-dhl9xgf4 2022-09-21T23:19:07,522 Preparing metadata (setup.py): started 2022-09-21T23:19:07,524 Running command python setup.py egg_info 2022-09-21T23:19:14,860 running egg_info 2022-09-21T23:19:14,866 creating /tmp/pip-pip-egg-info-dhl9xgf4/gemmi.egg-info 2022-09-21T23:19:15,512 writing /tmp/pip-pip-egg-info-dhl9xgf4/gemmi.egg-info/PKG-INFO 2022-09-21T23:19:16,075 writing dependency_links to /tmp/pip-pip-egg-info-dhl9xgf4/gemmi.egg-info/dependency_links.txt 2022-09-21T23:19:19,436 writing top-level names to /tmp/pip-pip-egg-info-dhl9xgf4/gemmi.egg-info/top_level.txt 2022-09-21T23:19:19,438 writing manifest file '/tmp/pip-pip-egg-info-dhl9xgf4/gemmi.egg-info/SOURCES.txt' 2022-09-21T23:19:20,959 reading manifest file '/tmp/pip-pip-egg-info-dhl9xgf4/gemmi.egg-info/SOURCES.txt' 2022-09-21T23:19:20,962 reading manifest template 'MANIFEST.in' 2022-09-21T23:19:21,185 adding license file 'LICENSE.txt' 2022-09-21T23:19:21,221 writing manifest file '/tmp/pip-pip-egg-info-dhl9xgf4/gemmi.egg-info/SOURCES.txt' 2022-09-21T23:19:21,453 Preparing metadata (setup.py): finished with status 'done' 2022-09-21T23:19:21,463 Source in /tmp/pip-wheel-zgkcjubk/gemmi_d07046740bac489e9d8384b9cf595300 has version 0.5.7, which satisfies requirement gemmi==0.5.7 from https://files.pythonhosted.org/packages/f6/b7/183942691786c635166851be162c76b53c80323daa801d818718c6b0eec9/gemmi-0.5.7.tar.gz#sha256=daeceeadbe192a900f92e42bb9850246cb187adf29e305eb1cf308be62ea7b8d 2022-09-21T23:19:21,465 Removed gemmi==0.5.7 from https://files.pythonhosted.org/packages/f6/b7/183942691786c635166851be162c76b53c80323daa801d818718c6b0eec9/gemmi-0.5.7.tar.gz#sha256=daeceeadbe192a900f92e42bb9850246cb187adf29e305eb1cf308be62ea7b8d from build tracker '/tmp/pip-build-tracker-3lih6cr2' 2022-09-21T23:19:21,474 Created temporary directory: /tmp/pip-unpack-zma45ua6 2022-09-21T23:19:21,475 Building wheels for collected packages: gemmi 2022-09-21T23:19:21,484 Created temporary directory: /tmp/pip-wheel-qsebwo7i 2022-09-21T23:19:21,485 Building wheel for gemmi (setup.py): started 2022-09-21T23:19:21,487 Destination directory: /tmp/pip-wheel-qsebwo7i 2022-09-21T23:19:21,487 Running command python setup.py bdist_wheel 2022-09-21T23:19:28,523 running bdist_wheel 2022-09-21T23:19:28,790 running build 2022-09-21T23:19:28,791 running build_py 2022-09-21T23:19:29,455 creating build 2022-09-21T23:19:29,456 creating build/lib.linux-armv7l-cpython-39 2022-09-21T23:19:29,457 creating build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,459 copying examples/ccd_gi.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,463 copying examples/multiproc.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,467 copying examples/col_order.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,470 copying examples/rama_gather.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,473 copying examples/sub_ccd.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,477 copying examples/cif_i_sigi.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,480 copying examples/map2mtz.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,484 copying examples/weight.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,488 copying examples/aafreq.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,491 copying examples/rama_plot.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,494 copying examples/__main__.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,498 copying examples/simple_search.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,501 copying examples/maskcheck.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,505 copying examples/matthews.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,509 copying examples/maskdiff.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,512 copying examples/hello.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,516 copying examples/from_json.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,519 copying examples/mtz_i_sigi.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,522 copying examples/monomers.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,526 copying examples/patterson_slice.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,529 copying examples/__init__.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,532 copying examples/merge_mtz_mmcif.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,536 copying examples/long_geom.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,539 copying examples/ccd_subgraph.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,542 copying examples/mtrix_iso.py -> build/lib.linux-armv7l-cpython-39/gemmi-examples 2022-09-21T23:19:29,549 running build_clib 2022-09-21T23:19:30,213 building 'gemmi_zlib' library 2022-09-21T23:19:30,215 creating build/temp.linux-armv7l-cpython-39 2022-09-21T23:19:30,216 creating build/temp.linux-armv7l-cpython-39/third_party 2022-09-21T23:19:30,217 creating build/temp.linux-armv7l-cpython-39/third_party/zlib 2022-09-21T23:19:30,219 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/adler32.c -o build/temp.linux-armv7l-cpython-39/third_party/zlib/adler32.o 2022-09-21T23:19:30,980 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/crc32.c -o build/temp.linux-armv7l-cpython-39/third_party/zlib/crc32.o 2022-09-21T23:19:31,913 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/gzlib.c -o build/temp.linux-armv7l-cpython-39/third_party/zlib/gzlib.o 2022-09-21T23:19:32,911 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/gzread.c -o build/temp.linux-armv7l-cpython-39/third_party/zlib/gzread.o 2022-09-21T23:19:34,217 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/inflate.c -o build/temp.linux-armv7l-cpython-39/third_party/zlib/inflate.o 2022-09-21T23:19:38,490 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/inftrees.c -o build/temp.linux-armv7l-cpython-39/third_party/zlib/inftrees.o 2022-09-21T23:19:39,274 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/inffast.c -o build/temp.linux-armv7l-cpython-39/third_party/zlib/inffast.o 2022-09-21T23:19:40,146 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNO_GZCOMPRESS=1 -DZ_HAVE_UNISTD_H=1 -c third_party/zlib/zutil.c -o build/temp.linux-armv7l-cpython-39/third_party/zlib/zutil.o 2022-09-21T23:19:40,562 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-39/libgemmi_zlib.a build/temp.linux-armv7l-cpython-39/third_party/zlib/adler32.o build/temp.linux-armv7l-cpython-39/third_party/zlib/crc32.o build/temp.linux-armv7l-cpython-39/third_party/zlib/gzlib.o build/temp.linux-armv7l-cpython-39/third_party/zlib/gzread.o build/temp.linux-armv7l-cpython-39/third_party/zlib/inflate.o build/temp.linux-armv7l-cpython-39/third_party/zlib/inftrees.o build/temp.linux-armv7l-cpython-39/third_party/zlib/inffast.o build/temp.linux-armv7l-cpython-39/third_party/zlib/zutil.o 2022-09-21T23:19:40,634 running build_ext 2022-09-21T23:19:40,645 creating tmp 2022-09-21T23:19:40,646 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c /tmp/tmpilsw12h0.cpp -o tmp/tmpilsw12h0.o -std=c++17 2022-09-21T23:19:40,867 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c /tmp/tmph99zz271.cpp -o tmp/tmph99zz271.o -fvisibility=hidden 2022-09-21T23:19:41,074 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c /tmp/tmpbfr9xh6u.cpp -o tmp/tmpbfr9xh6u.o -g0 2022-09-21T23:19:41,283 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c /tmp/tmpc0jblsqh.cpp -o tmp/tmpc0jblsqh.o -Wl,-s 2022-09-21T23:19:41,490 building 'gemmi' extension 2022-09-21T23:19:41,583 creating build/temp.linux-armv7l-cpython-39/python 2022-09-21T23:19:41,586 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/align.cpp -o build/temp.linux-armv7l-cpython-39/python/align.o -std=c++17 -fvisibility=hidden -g0 2022-09-21T23:20:27,844 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:20:27,845 from /usr/include/c++/10/functional:62, 2022-09-21T23:20:27,846 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:20:27,846 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:20:27,846 from include/gemmi/model.hpp:8, 2022-09-21T23:20:27,847 from include/gemmi/align.hpp:8, 2022-09-21T23:20:27,847 from python/align.cpp:3: 2022-09-21T23:20:27,847 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Position&}; _Tp = gemmi::Position; _Alloc = std::allocator]’: 2022-09-21T23:20:27,848 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:20:27,848 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:20:27,848 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:20:38,031 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:20:38,032 from /usr/include/c++/10/functional:62, 2022-09-21T23:20:38,032 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:20:38,033 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:20:38,033 from include/gemmi/model.hpp:8, 2022-09-21T23:20:38,033 from include/gemmi/align.hpp:8, 2022-09-21T23:20:38,034 from python/align.cpp:3: 2022-09-21T23:20:38,034 /usr/include/c++/10/bits/stl_vector.h: In function ‘void gemmi::prepare_positions_for_superposition(std::vector&, std::vector&, gemmi::ConstResidueSpan, gemmi::ConstResidueSpan, gemmi::PolymerType, gemmi::SupSelect, char, std::vector*)’: 2022-09-21T23:20:38,034 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:20:38,035 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:20:38,035 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:20:38,035 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:20:38,036 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:20:38,036 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:20:38,037 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:20:38,037 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:20:38,037 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:20:38,038 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:20:38,038 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:20:38,038 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:20:38,869 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:20:38,869 from /usr/include/c++/10/functional:62, 2022-09-21T23:20:38,869 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:20:38,870 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:20:38,870 from include/gemmi/model.hpp:8, 2022-09-21T23:20:38,870 from include/gemmi/align.hpp:8, 2022-09-21T23:20:38,871 from python/align.cpp:3: 2022-09-21T23:20:38,871 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::SupResult}; _Tp = gemmi::SupResult; _Alloc = std::allocator]’: 2022-09-21T23:20:38,871 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:20:38,872 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:20:38,872 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:20:38,941 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::SupResult}; _Tp = gemmi::SupResult; _Alloc = std::allocator]’: 2022-09-21T23:20:38,941 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:20:38,942 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:20:38,942 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:20:59,718 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:20:59,719 from /usr/include/c++/10/functional:62, 2022-09-21T23:20:59,719 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:20:59,720 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:20:59,720 from include/gemmi/model.hpp:8, 2022-09-21T23:20:59,720 from include/gemmi/align.hpp:8, 2022-09-21T23:20:59,721 from python/align.cpp:3: 2022-09-21T23:20:59,721 /usr/include/c++/10/bits/stl_vector.h: In member function ‘bool pybind11::detail::list_caster::load(pybind11::handle, bool) [with Type = std::vector; Value = gemmi::Position]’: 2022-09-21T23:20:59,721 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:20:59,722 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:20:59,722 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:21:01,186 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:21:01,186 from /usr/include/c++/10/functional:62, 2022-09-21T23:21:01,187 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:21:01,187 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:21:01,187 from include/gemmi/model.hpp:8, 2022-09-21T23:21:01,188 from include/gemmi/align.hpp:8, 2022-09-21T23:21:01,188 from python/align.cpp:3: 2022-09-21T23:21:01,188 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2022-09-21T23:21:01,189 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:21:01,189 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:21:01,189 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:21:01,307 /usr/include/c++/10/bits/vector.tcc: In member function ‘bool pybind11::detail::list_caster::load(pybind11::handle, bool) [with Type = std::vector; Value = double]’: 2022-09-21T23:21:01,308 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:21:01,308 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:21:01,308 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:21:02,432 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/ccp4.cpp -o build/temp.linux-armv7l-cpython-39/python/ccp4.o -std=c++17 -fvisibility=hidden -g0 2022-09-21T23:22:26,350 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/chemcomp.cpp -o build/temp.linux-armv7l-cpython-39/python/chemcomp.o -std=c++17 -fvisibility=hidden -g0 2022-09-21T23:23:51,651 In file included from /usr/include/c++/10/bits/char_traits.h:39, 2022-09-21T23:23:51,652 from /usr/include/c++/10/string:40, 2022-09-21T23:23:51,652 from include/gemmi/chemcomp.hpp:9, 2022-09-21T23:23:51,653 from python/chemcomp.cpp:3: 2022-09-21T23:23:51,653 /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred:: >]’: 2022-09-21T23:23:51,653 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:23:51,654 1921 | __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, 2022-09-21T23:23:51,654 | ^~~~~~~~~ 2022-09-21T23:23:51,655 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:23:52,080 /usr/include/c++/10/bits/stl_algobase.h: In member function ‘const gemmi::Restraints::Bond& gemmi::Restraints::get_bond(const gemmi::Restraints::AtomId&, const gemmi::Restraints::AtomId&) const’: 2022-09-21T23:23:52,080 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:23:52,081 1974 | return __find_if(__first, __last, __pred, 2022-09-21T23:23:52,081 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:23:52,081 1975 | std::__iterator_category(__first)); 2022-09-21T23:23:52,082 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:23:57,308 /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred:: >]’: 2022-09-21T23:23:57,309 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:23:57,309 1921 | __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, 2022-09-21T23:23:57,309 | ^~~~~~~~~ 2022-09-21T23:23:57,310 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:23:57,450 /usr/include/c++/10/bits/stl_algobase.h: In member function ‘double gemmi::Restraints::chiral_abs_volume(const gemmi::Restraints::Chirality&) const’: 2022-09-21T23:23:57,451 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:23:57,451 1974 | return __find_if(__first, __last, __pred, 2022-09-21T23:23:57,451 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:23:57,452 1975 | std::__iterator_category(__first)); 2022-09-21T23:23:57,452 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:23:57,453 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:23:57,454 1974 | return __find_if(__first, __last, __pred, 2022-09-21T23:23:57,454 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:23:57,454 1975 | std::__iterator_category(__first)); 2022-09-21T23:23:57,455 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:23:57,455 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:23:57,455 1974 | return __find_if(__first, __last, __pred, 2022-09-21T23:23:57,456 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:23:57,456 1975 | std::__iterator_category(__first)); 2022-09-21T23:23:57,457 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:23:57,457 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:23:57,457 1974 | return __find_if(__first, __last, __pred, 2022-09-21T23:23:57,458 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:23:57,458 1975 | std::__iterator_category(__first)); 2022-09-21T23:23:57,458 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:23:57,459 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:23:57,459 1974 | return __find_if(__first, __last, __pred, 2022-09-21T23:23:57,459 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:23:57,460 1975 | std::__iterator_category(__first)); 2022-09-21T23:23:57,460 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:23:57,460 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:23:57,461 1974 | return __find_if(__first, __last, __pred, 2022-09-21T23:23:57,461 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:23:57,461 1975 | std::__iterator_category(__first)); 2022-09-21T23:23:57,461 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:06,514 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:24:06,515 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:24:06,515 from python/chemcomp.cpp:3: 2022-09-21T23:24:06,515 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Plane}; _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator]’: 2022-09-21T23:24:06,516 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:06,516 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:24:06,516 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:06,698 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2022-09-21T23:24:06,698 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:06,699 184 | vector<_Tp, _Alloc>:: 2022-09-21T23:24:06,699 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:06,699 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:06,850 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator]’: 2022-09-21T23:24:06,851 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:06,851 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:07,000 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator]’: 2022-09-21T23:24:07,001 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:07,001 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:07,865 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:24:07,865 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:24:07,865 from python/chemcomp.cpp:3: 2022-09-21T23:24:07,866 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::ChemComp::remove_nonmatching_restraints()’: 2022-09-21T23:24:07,866 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:07,866 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:24:07,867 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:07,869 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:07,869 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:24:07,870 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:07,873 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:07,874 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:24:07,874 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:09,096 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:24:09,097 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:24:09,097 from python/chemcomp.cpp:3: 2022-09-21T23:24:09,098 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Bond}; _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2022-09-21T23:24:09,098 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:09,098 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:24:09,099 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:09,337 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Angle}; _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator]’: 2022-09-21T23:24:09,337 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:09,611 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Torsion}; _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator]’: 2022-09-21T23:24:09,612 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:10,310 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::make_chemcomp_with_restraints(const gemmi::Residue&)::Pair}; _Tp = gemmi::make_chemcomp_with_restraints(const gemmi::Residue&)::Pair; _Alloc = std::allocator]’: 2022-09-21T23:24:10,310 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:10,606 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Angle&}; _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator]’: 2022-09-21T23:24:10,607 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:11,822 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator]’: 2022-09-21T23:24:11,823 /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:24:11,823 130 | vector<_Tp, _Alloc>:: 2022-09-21T23:24:11,823 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:11,826 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:11,826 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2022-09-21T23:24:11,826 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:14,738 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Bond&}; _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2022-09-21T23:24:14,739 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:14,739 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:24:14,739 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:14,978 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2022-09-21T23:24:14,978 /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:24:14,979 130 | vector<_Tp, _Alloc>:: 2022-09-21T23:24:14,979 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:14,981 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:14,981 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2022-09-21T23:24:14,982 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:15,314 /usr/include/c++/10/bits/vector.tcc: In function ‘gemmi::ChemComp gemmi::make_chemcomp_with_restraints(const gemmi::Residue&)’: 2022-09-21T23:24:15,314 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:15,315 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:24:15,315 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:15,316 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:24:15,316 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:24:15,317 from python/chemcomp.cpp:3: 2022-09-21T23:24:15,317 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:15,317 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:24:15,318 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:24:15,321 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:15,321 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:24:15,321 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:24:16,811 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:24:16,812 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:24:16,812 from python/chemcomp.cpp:3: 2022-09-21T23:24:16,812 /usr/include/c++/10/bits/vector.tcc: In function ‘gemmi::ChemComp gemmi::make_chemcomp_from_block(const gemmi::cif::Block&)’: 2022-09-21T23:24:16,813 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:16,813 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:24:16,814 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:16,814 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:16,815 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:24:16,815 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:16,817 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:16,818 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:24:16,818 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:16,831 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:16,832 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:24:16,832 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:18,750 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2022-09-21T23:24:18,750 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:18,751 171 | vector<_Tp, _Alloc>:: 2022-09-21T23:24:18,751 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:18,937 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator]’: 2022-09-21T23:24:18,937 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:19,205 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Torsion&}; _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator]’: 2022-09-21T23:24:19,205 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:19,206 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:24:19,206 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:19,495 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator]’: 2022-09-21T23:24:19,496 /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:24:19,496 130 | vector<_Tp, _Alloc>:: 2022-09-21T23:24:19,497 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:19,499 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:19,500 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2022-09-21T23:24:19,500 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:19,786 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator]’: 2022-09-21T23:24:19,787 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:19,787 171 | vector<_Tp, _Alloc>:: 2022-09-21T23:24:19,788 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:20,925 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Plane&}; _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator]’: 2022-09-21T23:24:20,926 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:20,926 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:24:20,927 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:21,103 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator]’: 2022-09-21T23:24:21,103 /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:24:21,104 130 | vector<_Tp, _Alloc>:: 2022-09-21T23:24:21,104 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:21,106 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:21,106 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2022-09-21T23:24:21,106 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:21,293 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator]’: 2022-09-21T23:24:21,293 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:21,294 184 | vector<_Tp, _Alloc>:: 2022-09-21T23:24:21,294 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:21,294 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:21,441 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator]’: 2022-09-21T23:24:21,442 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:24:21,442 171 | vector<_Tp, _Alloc>:: 2022-09-21T23:24:21,442 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:35,860 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:24:35,861 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:24:35,861 from python/chemcomp.cpp:3: 2022-09-21T23:24:35,862 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const T&)>, void, {std::vector >&, const gemmi::Restraints::Bond&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:35,862 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:35,862 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:24:35,863 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:24:36,085 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const T&)>, void, {std::vector >&, const gemmi::Restraints::Angle&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:36,086 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:36,086 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:24:36,087 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:24:36,174 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, void, {std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:36,174 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:36,175 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:24:36,175 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:36,447 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const T&)>, void, {std::vector >&, const gemmi::Restraints::Torsion&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:36,448 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:36,448 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:24:36,448 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:24:36,935 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, void, {std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:36,935 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:36,935 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:24:36,936 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:37,189 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const T&)>, void, {std::vector >&, const gemmi::Restraints::Plane&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:37,190 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:37,190 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:24:37,190 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:24:38,379 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:24:38,379 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:24:38,380 from python/chemcomp.cpp:3: 2022-09-21T23:24:38,380 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const pybind11::iterable&)>, void, {std::vector >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:38,380 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:38,381 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:24:38,381 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:38,381 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:24:38,382 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:24:38,382 from python/chemcomp.cpp:3: 2022-09-21T23:24:38,382 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:38,383 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:24:38,383 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:38,795 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:24:38,795 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:24:38,796 from python/chemcomp.cpp:3: 2022-09-21T23:24:38,796 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const pybind11::iterable&)>, void, {std::vector >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:38,797 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:38,797 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:24:38,797 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:38,798 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:24:38,798 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:24:38,798 from python/chemcomp.cpp:3: 2022-09-21T23:24:38,799 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:38,799 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:24:38,799 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:39,247 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:24:39,248 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:24:39,248 from python/chemcomp.cpp:3: 2022-09-21T23:24:39,249 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const pybind11::iterable&)>, void, {std::vector >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:39,249 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:39,249 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:24:39,250 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:39,250 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:24:39,250 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:24:39,251 from python/chemcomp.cpp:3: 2022-09-21T23:24:39,251 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:39,251 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:24:39,252 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:40,238 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:24:40,239 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:24:40,239 from python/chemcomp.cpp:3: 2022-09-21T23:24:40,240 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const pybind11::iterable&)>, void, {std::vector >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:40,240 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:40,240 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:24:40,241 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:40,241 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:24:40,241 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:24:40,242 from python/chemcomp.cpp:3: 2022-09-21T23:24:40,242 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:40,242 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:24:40,243 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:43,847 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:24:43,848 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:24:43,848 from python/chemcomp.cpp:3: 2022-09-21T23:24:43,848 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::execute, std::unique_ptr >, std::default_delete > > > >, {}>::, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:43,849 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:43,849 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:24:43,849 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:44,073 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::execute, std::unique_ptr >, std::default_delete > > > >, {}>::, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:44,074 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:44,074 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:24:44,074 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:44,269 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::execute, std::unique_ptr >, std::default_delete > > > >, {}>::, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:44,270 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:44,270 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:24:44,270 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:44,531 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::execute, std::unique_ptr >, std::default_delete > > > >, {}>::, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:44,531 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:44,531 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:24:44,532 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:44,974 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:24:44,975 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:24:44,975 from python/chemcomp.cpp:3: 2022-09-21T23:24:44,975 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, void, {std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:44,976 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:44,976 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:24:44,976 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:45,090 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, void, {std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:45,090 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:45,091 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:24:45,091 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:24:45,706 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, std::vector*, {const std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:45,707 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:45,707 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:24:45,707 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:24:45,925 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, std::vector*, {const std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:45,926 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:45,926 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:24:45,926 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:24:46,147 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, std::vector*, {const std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:46,148 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:46,148 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:24:46,149 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:24:46,654 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, std::vector*, {const std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:24:46,655 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:24:46,655 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:24:46,655 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:25:15,282 In file included from python/common.h:3, 2022-09-21T23:25:15,282 from python/chemcomp.cpp:6: 2022-09-21T23:25:15,283 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::detail::make_iterator_impl(Iterator, Sentinel, Extra&& ...) [with Access = pybind11::detail::iterator_access<__gnu_cxx::__normal_iterator >, gemmi::Restraints::Bond&>; pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::Restraints::Bond&; Extra = {}]’: 2022-09-21T23:25:15,283 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:15,283 2356 | iterator make_iterator_impl(Iterator first, Sentinel last, Extra &&...extra) { 2022-09-21T23:25:15,284 | ^~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:15,284 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:15,285 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:15,415 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:15,416 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2399:91: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:15,416 2399 | Extra...>(first, last, std::forward(extra)...); 2022-09-21T23:25:15,417 | ^ 2022-09-21T23:25:15,630 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::detail::make_iterator_impl(Iterator, Sentinel, Extra&& ...) [with Access = pybind11::detail::iterator_access<__gnu_cxx::__normal_iterator >, gemmi::Restraints::Angle&>; pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::Restraints::Angle&; Extra = {}]’: 2022-09-21T23:25:15,631 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:15,631 2356 | iterator make_iterator_impl(Iterator first, Sentinel last, Extra &&...extra) { 2022-09-21T23:25:15,632 | ^~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:15,632 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:15,632 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:15,761 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:15,762 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2399:91: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:15,762 2399 | Extra...>(first, last, std::forward(extra)...); 2022-09-21T23:25:15,763 | ^ 2022-09-21T23:25:15,986 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::detail::make_iterator_impl(Iterator, Sentinel, Extra&& ...) [with Access = pybind11::detail::iterator_access<__gnu_cxx::__normal_iterator >, gemmi::Restraints::Torsion&>; pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::Restraints::Torsion&; Extra = {}]’: 2022-09-21T23:25:15,986 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:15,987 2356 | iterator make_iterator_impl(Iterator first, Sentinel last, Extra &&...extra) { 2022-09-21T23:25:15,987 | ^~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:15,988 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:15,988 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:16,117 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:16,118 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2399:91: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:16,118 2399 | Extra...>(first, last, std::forward(extra)...); 2022-09-21T23:25:16,119 | ^ 2022-09-21T23:25:16,677 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::detail::make_iterator_impl(Iterator, Sentinel, Extra&& ...) [with Access = pybind11::detail::iterator_access<__gnu_cxx::__normal_iterator >, gemmi::Restraints::Plane&>; pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::Restraints::Plane&; Extra = {}]’: 2022-09-21T23:25:16,678 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:16,678 2356 | iterator make_iterator_impl(Iterator first, Sentinel last, Extra &&...extra) { 2022-09-21T23:25:16,678 | ^~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:16,679 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:16,679 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:16,808 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:16,808 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2399:91: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:16,809 2399 | Extra...>(first, last, std::forward(extra)...); 2022-09-21T23:25:16,809 | ^ 2022-09-21T23:25:20,492 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:25:20,492 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:25:20,492 from python/chemcomp.cpp:3: 2022-09-21T23:25:20,493 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, gemmi::Restraints::Plane, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:20,493 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:20,494 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:25:20,494 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:20,625 In file included from python/chemcomp.cpp:8: 2022-09-21T23:25:20,626 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType, const T&)>, void, {std::vector >&, int, const gemmi::Restraints::Plane&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:20,626 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:198:21: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:25:20,627 198 | v.insert(v.begin() + i, x); 2022-09-21T23:25:20,627 | ~~~~~~~~^~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:20,920 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:25:20,921 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:25:20,921 from python/chemcomp.cpp:3: 2022-09-21T23:25:20,922 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, gemmi::Restraints::Torsion, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:20,922 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:20,922 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:25:20,923 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:21,019 In file included from python/chemcomp.cpp:8: 2022-09-21T23:25:21,020 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType, const T&)>, void, {std::vector >&, int, const gemmi::Restraints::Torsion&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:21,020 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:198:21: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:25:21,021 198 | v.insert(v.begin() + i, x); 2022-09-21T23:25:21,021 | ~~~~~~~~^~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:21,117 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:25:21,118 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:25:21,118 from python/chemcomp.cpp:3: 2022-09-21T23:25:21,119 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, gemmi::Restraints::Angle, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:21,119 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:21,119 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:25:21,120 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:21,214 In file included from python/chemcomp.cpp:8: 2022-09-21T23:25:21,214 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType, const T&)>, void, {std::vector >&, int, const gemmi::Restraints::Angle&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:21,215 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:198:21: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:25:21,215 198 | v.insert(v.begin() + i, x); 2022-09-21T23:25:21,215 | ~~~~~~~~^~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:21,306 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:25:21,306 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:25:21,307 from python/chemcomp.cpp:3: 2022-09-21T23:25:21,307 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, gemmi::Restraints::Bond, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:21,308 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:21,308 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:25:21,308 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:21,410 In file included from python/chemcomp.cpp:8: 2022-09-21T23:25:21,411 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType, const T&)>, void, {std::vector >&, int, const gemmi::Restraints::Bond&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:21,411 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:198:21: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:25:21,411 198 | v.insert(v.begin() + i, x); 2022-09-21T23:25:21,412 | ~~~~~~~~^~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:21,823 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:25:21,824 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:25:21,825 from python/chemcomp.cpp:3: 2022-09-21T23:25:21,825 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, void, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:21,826 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:21,826 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:25:21,826 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:22,059 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, void, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:22,059 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:22,059 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:25:22,060 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:22,136 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, void, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:22,136 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:22,137 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:25:22,137 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:22,211 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, void, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:22,211 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:22,212 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:25:22,212 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:24,218 In file included from /usr/include/c++/10/vector:66, 2022-09-21T23:25:24,218 from include/gemmi/chemcomp.hpp:10, 2022-09-21T23:25:24,219 from python/chemcomp.cpp:3: 2022-09-21T23:25:24,219 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Restraints::Bond*; bool _TrivialValueTypes = false]’: 2022-09-21T23:25:24,219 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:24,220 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:25:24,220 | ^~~~~~~~~~~~~ 2022-09-21T23:25:24,220 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:24,377 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const std::vector&)>, void, {std::vector >&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:24,378 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:24,378 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:25:24,379 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:24,379 148 | && __is_trivial(_ValueType2) 2022-09-21T23:25:24,379 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:24,379 149 | && __assignable>:: 2022-09-21T23:25:24,380 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:24,380 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:25:24,380 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:24,381 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:24,381 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:25:24,381 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:24,382 148 | && __is_trivial(_ValueType2) 2022-09-21T23:25:24,382 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:24,382 149 | && __assignable>:: 2022-09-21T23:25:24,383 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:24,383 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:25:24,383 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:24,619 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::def_readwrite, {}>::::type&, const std::vector&)>, void, {gemmi::Restraints&, const std::vector >&}, {pybind11::is_method}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:24,619 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:24,620 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:25:24,620 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:24,620 148 | && __is_trivial(_ValueType2) 2022-09-21T23:25:24,621 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:24,621 149 | && __assignable>:: 2022-09-21T23:25:24,621 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:24,622 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:25:24,622 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:24,855 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Restraints::Angle*; bool _TrivialValueTypes = false]’: 2022-09-21T23:25:24,856 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:24,856 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:25:24,857 | ^~~~~~~~~~~~~ 2022-09-21T23:25:24,857 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:25,047 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const std::vector&)>, void, {std::vector >&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:25,048 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:25,048 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:25:25,049 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:25,049 148 | && __is_trivial(_ValueType2) 2022-09-21T23:25:25,049 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:25,050 149 | && __assignable>:: 2022-09-21T23:25:25,050 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:25,050 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:25:25,050 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:25,051 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:25,051 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:25:25,052 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:25,052 148 | && __is_trivial(_ValueType2) 2022-09-21T23:25:25,052 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:25,052 149 | && __assignable>:: 2022-09-21T23:25:25,053 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:25,053 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:25:25,053 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:25,301 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::def_readwrite, {}>::::type&, const std::vector&)>, void, {gemmi::Restraints&, const std::vector >&}, {pybind11::is_method}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:25,301 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:25,302 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:25:25,302 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:25,302 148 | && __is_trivial(_ValueType2) 2022-09-21T23:25:25,303 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:25,303 149 | && __assignable>:: 2022-09-21T23:25:25,303 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:25,304 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:25:25,304 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:25,572 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Restraints::Torsion*; bool _TrivialValueTypes = false]’: 2022-09-21T23:25:25,572 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:25,573 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:25:25,573 | ^~~~~~~~~~~~~ 2022-09-21T23:25:25,573 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:25,785 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const std::vector&)>, void, {std::vector >&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:25,785 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:25,786 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:25:25,786 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:25,786 148 | && __is_trivial(_ValueType2) 2022-09-21T23:25:25,787 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:25,787 149 | && __assignable>:: 2022-09-21T23:25:25,787 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:25,787 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:25:25,788 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:25,788 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:25,788 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:25:25,789 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:25,789 148 | && __is_trivial(_ValueType2) 2022-09-21T23:25:25,789 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:25,790 149 | && __assignable>:: 2022-09-21T23:25:25,790 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:25,790 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:25:25,790 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:26,008 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::def_readwrite, {}>::::type&, const std::vector&)>, void, {gemmi::Restraints&, const std::vector >&}, {pybind11::is_method}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:26,009 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:26,009 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:25:26,009 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:26,010 148 | && __is_trivial(_ValueType2) 2022-09-21T23:25:26,010 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:26,010 149 | && __assignable>:: 2022-09-21T23:25:26,011 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:26,011 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:25:26,011 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:26,875 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Restraints::Plane*; bool _TrivialValueTypes = false]’: 2022-09-21T23:25:26,876 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:26,876 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:25:26,876 | ^~~~~~~~~~~~~ 2022-09-21T23:25:26,877 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:27,088 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const std::vector&)>, void, {std::vector >&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:27,089 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:27,089 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:25:27,089 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:27,090 148 | && __is_trivial(_ValueType2) 2022-09-21T23:25:27,090 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:27,090 149 | && __assignable>:: 2022-09-21T23:25:27,090 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:27,091 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:25:27,091 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:27,091 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:27,092 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:25:27,092 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:27,092 148 | && __is_trivial(_ValueType2) 2022-09-21T23:25:27,093 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:27,093 149 | && __assignable>:: 2022-09-21T23:25:27,093 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:27,094 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:25:27,094 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:27,376 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::def_readwrite, {}>::::type&, const std::vector&)>, void, {gemmi::Restraints&, const std::vector >&}, {pybind11::is_method}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:25:27,376 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:25:27,377 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:25:27,377 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:27,377 148 | && __is_trivial(_ValueType2) 2022-09-21T23:25:27,378 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:27,378 149 | && __assignable>:: 2022-09-21T23:25:27,378 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:27,379 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:25:27,379 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:25:30,640 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/cif.cpp -o build/temp.linux-armv7l-cpython-39/python/cif.o -std=c++17 -fvisibility=hidden -g0 2022-09-21T23:27:35,591 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/custom.cpp -o build/temp.linux-armv7l-cpython-39/python/custom.o -std=c++17 -fvisibility=hidden -g0 2022-09-21T23:27:48,170 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/elem.cpp -o build/temp.linux-armv7l-cpython-39/python/elem.o -std=c++17 -fvisibility=hidden -g0 2022-09-21T23:28:59,444 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/gemmi.cpp -o build/temp.linux-armv7l-cpython-39/python/gemmi.o -std=c++17 -fvisibility=hidden -g0 2022-09-21T23:29:56,158 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/grid.cpp -o build/temp.linux-armv7l-cpython-39/python/grid.o -std=c++17 -fvisibility=hidden -g0 2022-09-21T23:31:09,521 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2022-09-21T23:31:09,522 from /usr/include/c++/10/algorithm:62, 2022-09-21T23:31:09,522 from include/gemmi/grid.hpp:11, 2022-09-21T23:31:09,522 from python/grid.cpp:13: 2022-09-21T23:31:09,523 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = gemmi::Blob; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const gemmi::BlobCriteria&, bool):: >]’: 2022-09-21T23:31:09,523 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:31:09,523 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2022-09-21T23:31:09,524 | ^~~~~~~~~~~~~ 2022-09-21T23:31:09,766 In file included from /usr/include/c++/10/algorithm:62, 2022-09-21T23:31:09,767 from include/gemmi/grid.hpp:11, 2022-09-21T23:31:09,767 from python/grid.cpp:13: 2022-09-21T23:31:09,768 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const gemmi::BlobCriteria&, bool):: >]’: 2022-09-21T23:31:09,768 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:31:09,768 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2022-09-21T23:31:09,769 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:31:09,889 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const gemmi::BlobCriteria&, bool):: >]’: 2022-09-21T23:31:09,890 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:31:09,890 1839 | __insertion_sort(_RandomAccessIterator __first, 2022-09-21T23:31:09,890 | ^~~~~~~~~~~~~~~~ 2022-09-21T23:31:09,891 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:31:22,109 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:31:22,109 from /usr/include/c++/10/functional:62, 2022-09-21T23:31:22,110 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:31:22,110 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:31:22,110 from include/gemmi/grid.hpp:11, 2022-09-21T23:31:22,111 from python/grid.cpp:13: 2022-09-21T23:31:22,111 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Blob&}; _Tp = gemmi::Blob; _Alloc = std::allocator]’: 2022-09-21T23:31:22,111 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:31:22,112 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:31:22,112 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:31:41,126 In file included from /usr/include/c++/10/algorithm:62, 2022-09-21T23:31:41,126 from include/gemmi/grid.hpp:11, 2022-09-21T23:31:41,127 from python/grid.cpp:13: 2022-09-21T23:31:41,127 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const gemmi::BlobCriteria&, bool):: >]’: 2022-09-21T23:31:41,127 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:31:41,128 1662 | __heap_select(_RandomAccessIterator __first, 2022-09-21T23:31:41,128 | ^~~~~~~~~~~~~ 2022-09-21T23:31:41,128 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:31:41,129 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:31:41,129 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:31:41,216 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const gemmi::BlobCriteria&, bool):: >]’: 2022-09-21T23:31:41,216 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:31:41,216 1945 | __introsort_loop(_RandomAccessIterator __first, 2022-09-21T23:31:41,217 | ^~~~~~~~~~~~~~~~ 2022-09-21T23:31:41,217 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:31:41,219 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:31:41,219 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2022-09-21T23:31:41,220 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:31:41,220 /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:31:41,220 1937 | std::__heap_select(__first, __middle, __last, __comp); 2022-09-21T23:31:41,221 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:32:28,973 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:32:28,973 from /usr/include/c++/10/functional:62, 2022-09-21T23:32:28,974 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:32:28,974 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:32:28,975 from include/gemmi/grid.hpp:11, 2022-09-21T23:32:28,975 from python/grid.cpp:13: 2022-09-21T23:32:28,975 /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector gemmi::find_blobs_by_flood_fill(const gemmi::Grid&, const gemmi::BlobCriteria&, bool)’: 2022-09-21T23:32:28,976 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:32:28,976 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:32:28,976 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:32:28,977 In file included from /usr/include/c++/10/algorithm:62, 2022-09-21T23:32:28,977 from include/gemmi/grid.hpp:11, 2022-09-21T23:32:28,977 from python/grid.cpp:13: 2022-09-21T23:32:28,978 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:32:28,978 1974 | std::__introsort_loop(__first, __last, 2022-09-21T23:32:28,978 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2022-09-21T23:32:28,979 1975 | std::__lg(__last - __first) * 2, 2022-09-21T23:32:28,979 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:32:28,979 1976 | __comp); 2022-09-21T23:32:28,979 | ~~~~~~~ 2022-09-21T23:32:28,980 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:32:28,980 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2022-09-21T23:32:28,980 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:32:28,981 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:32:28,981 1891 | std::__insertion_sort(__first, __last, __comp); 2022-09-21T23:32:28,981 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:32:35,867 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:32:35,868 from /usr/include/c++/10/functional:62, 2022-09-21T23:32:35,868 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:32:35,868 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:32:35,869 from include/gemmi/grid.hpp:11, 2022-09-21T23:32:35,869 from python/grid.cpp:13: 2022-09-21T23:32:35,869 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Position&}; _Tp = gemmi::Position; _Alloc = std::allocator]’: 2022-09-21T23:32:35,870 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:32:35,870 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:32:35,870 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:32:36,009 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:32:36,009 from /usr/include/c++/10/functional:62, 2022-09-21T23:32:36,009 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:32:36,010 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:32:36,010 from include/gemmi/grid.hpp:11, 2022-09-21T23:32:36,010 from python/grid.cpp:13: 2022-09-21T23:32:36,011 /usr/include/c++/10/bits/stl_vector.h: In member function ‘bool pybind11::detail::list_caster::load(pybind11::handle, bool) [with Type = std::vector; Value = gemmi::Position]’: 2022-09-21T23:32:36,011 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:32:36,011 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:32:36,012 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:32:38,156 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/hkl.cpp -o build/temp.linux-armv7l-cpython-39/python/hkl.o -std=c++17 -fvisibility=hidden -g0 2022-09-21T23:32:54,541 python/hkl.cpp: In lambda function: 2022-09-21T23:32:54,542 python/hkl.cpp:143:18: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 2022-09-21T23:32:54,542 143 | return r; 2022-09-21T23:32:54,543 | ^ 2022-09-21T23:33:53,981 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2022-09-21T23:33:53,982 from /usr/include/c++/10/algorithm:62, 2022-09-21T23:33:53,982 from include/gemmi/math.hpp:10, 2022-09-21T23:33:53,983 from include/gemmi/unitcell.hpp:11, 2022-09-21T23:33:53,983 from python/hkl.cpp:3: 2022-09-21T23:33:53,983 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2022-09-21T23:33:53,984 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:33:53,984 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2022-09-21T23:33:53,984 | ^~~~~~~~~~~~~ 2022-09-21T23:33:55,095 In file included from /usr/include/c++/10/algorithm:62, 2022-09-21T23:33:55,096 from include/gemmi/math.hpp:10, 2022-09-21T23:33:55,096 from include/gemmi/unitcell.hpp:11, 2022-09-21T23:33:55,096 from python/hkl.cpp:3: 2022-09-21T23:33:55,097 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2022-09-21T23:33:55,097 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:33:55,097 1839 | __insertion_sort(_RandomAccessIterator __first, 2022-09-21T23:33:55,098 | ^~~~~~~~~~~~~~~~ 2022-09-21T23:33:55,098 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:33:55,549 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2022-09-21T23:33:55,550 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:33:55,550 1945 | __introsort_loop(_RandomAccessIterator __first, 2022-09-21T23:33:55,551 | ^~~~~~~~~~~~~~~~ 2022-09-21T23:33:55,551 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:33:55,551 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:33:55,552 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2022-09-21T23:33:55,552 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:33:56,536 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: 2022-09-21T23:33:56,536 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:33:56,537 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2022-09-21T23:33:56,537 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:33:56,599 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2022-09-21T23:33:56,599 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:33:56,599 1839 | __insertion_sort(_RandomAccessIterator __first, 2022-09-21T23:33:56,600 | ^~~~~~~~~~~~~~~~ 2022-09-21T23:33:56,600 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:33:56,724 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2022-09-21T23:33:56,725 from /usr/include/c++/10/algorithm:62, 2022-09-21T23:33:56,725 from include/gemmi/math.hpp:10, 2022-09-21T23:33:56,725 from include/gemmi/unitcell.hpp:11, 2022-09-21T23:33:56,726 from python/hkl.cpp:3: 2022-09-21T23:33:56,726 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = gemmi::Intensities::Refl; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2022-09-21T23:33:56,726 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:33:56,727 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2022-09-21T23:33:56,727 | ^~~~~~~~~~~~~ 2022-09-21T23:34:13,721 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:34:13,721 from include/gemmi/unitcell.hpp:10, 2022-09-21T23:34:13,722 from python/hkl.cpp:3: 2022-09-21T23:34:13,722 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Intensities::Refl; _Alloc = std::allocator]’: 2022-09-21T23:34:13,722 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:34:13,723 184 | vector<_Tp, _Alloc>:: 2022-09-21T23:34:13,723 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:34:13,723 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:34:13,906 In file included from /usr/include/c++/10/algorithm:62, 2022-09-21T23:34:13,907 from include/gemmi/math.hpp:10, 2022-09-21T23:34:13,907 from include/gemmi/unitcell.hpp:11, 2022-09-21T23:34:13,907 from python/hkl.cpp:3: 2022-09-21T23:34:13,908 /usr/include/c++/10/bits/stl_algo.h: In member function ‘int gemmi::Binner::setup_from_1_d2(int, gemmi::Binner::Method, std::vector&&, const gemmi::UnitCell*)’: 2022-09-21T23:34:13,908 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:34:13,908 1974 | std::__introsort_loop(__first, __last, 2022-09-21T23:34:13,909 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2022-09-21T23:34:13,909 1975 | std::__lg(__last - __first) * 2, 2022-09-21T23:34:13,909 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:34:13,910 1976 | __comp); 2022-09-21T23:34:13,910 | ~~~~~~~ 2022-09-21T23:34:13,910 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:34:13,911 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2022-09-21T23:34:13,911 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:34:13,911 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:34:13,912 1891 | std::__insertion_sort(__first, __last, __comp); 2022-09-21T23:34:13,912 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:34:22,497 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:34:22,498 from include/gemmi/unitcell.hpp:10, 2022-09-21T23:34:22,499 from python/hkl.cpp:3: 2022-09-21T23:34:22,499 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::Intensities::remove_systematic_absences()’: 2022-09-21T23:34:22,499 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:34:22,500 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:34:22,500 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:34:23,853 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:34:23,853 from include/gemmi/unitcell.hpp:10, 2022-09-21T23:34:23,853 from python/hkl.cpp:3: 2022-09-21T23:34:23,854 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2022-09-21T23:34:23,854 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:34:23,855 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:34:23,855 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:34:23,855 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:34:24,038 /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const gemmi::SpaceGroup*)’: 2022-09-21T23:34:24,039 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:34:24,039 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:34:24,039 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:34:25,468 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mtz::Dataset}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator]’: 2022-09-21T23:34:25,469 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:34:25,469 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:34:25,469 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:34:25,823 /usr/include/c++/10/bits/vector.tcc: In member function ‘gemmi::Mtz::Dataset& gemmi::Mtz::add_dataset(const string&)’: 2022-09-21T23:34:25,823 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:34:25,824 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:34:25,824 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:34:26,614 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Intensities::Refl}; _Tp = gemmi::Intensities::Refl; _Alloc = std::allocator]’: 2022-09-21T23:34:26,615 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:34:26,615 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:34:26,615 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:34:26,658 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Intensities::Refl}; _Tp = gemmi::Intensities::Refl; _Alloc = std::allocator]’: 2022-09-21T23:34:26,658 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:34:26,659 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:34:26,659 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:34:32,133 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::cif::Block}; _Tp = gemmi::ReflnBlock; _Alloc = std::allocator]’: 2022-09-21T23:34:32,133 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:34:32,134 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:34:32,134 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:34:39,916 In file included from /usr/include/c++/10/algorithm:62, 2022-09-21T23:34:39,916 from include/gemmi/math.hpp:10, 2022-09-21T23:34:39,917 from include/gemmi/unitcell.hpp:11, 2022-09-21T23:34:39,917 from python/hkl.cpp:3: 2022-09-21T23:34:39,917 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2022-09-21T23:34:39,918 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:34:39,918 1662 | __heap_select(_RandomAccessIterator __first, 2022-09-21T23:34:39,918 | ^~~~~~~~~~~~~ 2022-09-21T23:34:39,919 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:34:39,919 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:34:39,920 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:34:56,264 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:34:56,265 from include/gemmi/unitcell.hpp:10, 2022-09-21T23:34:56,265 from python/hkl.cpp:3: 2022-09-21T23:34:56,266 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, std::vector, {gemmi::cif::Document&}, {pybind11::name, pybind11::scope, pybind11::sibling}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:34:56,266 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:34:56,266 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:34:56,267 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:35:13,738 In file included from python/common.h:3, 2022-09-21T23:35:13,738 from python/hkl.cpp:13: 2022-09-21T23:35:13,738 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::detail::make_iterator_impl(Iterator, Sentinel, Extra&& ...) [with Access = pybind11::detail::iterator_access<__gnu_cxx::__normal_iterator >, gemmi::ReflnBlock&>; pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::ReflnBlock&; Extra = {}]’: 2022-09-21T23:35:13,739 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:35:13,739 2356 | iterator make_iterator_impl(Iterator first, Sentinel last, Extra &&...extra) { 2022-09-21T23:35:13,740 | ^~~~~~~~~~~~~~~~~~ 2022-09-21T23:35:13,740 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:35:13,740 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:35:13,951 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:35:13,951 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2399:91: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:35:13,952 2399 | Extra...>(first, last, std::forward(extra)...); 2022-09-21T23:35:13,952 | ^ 2022-09-21T23:35:21,772 In file included from /usr/include/c++/10/algorithm:62, 2022-09-21T23:35:21,773 from include/gemmi/math.hpp:10, 2022-09-21T23:35:21,773 from include/gemmi/unitcell.hpp:11, 2022-09-21T23:35:21,773 from python/hkl.cpp:3: 2022-09-21T23:35:21,774 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2022-09-21T23:35:21,774 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:35:21,774 1945 | __introsort_loop(_RandomAccessIterator __first, 2022-09-21T23:35:21,775 | ^~~~~~~~~~~~~~~~ 2022-09-21T23:35:21,775 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:35:21,776 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:35:21,776 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2022-09-21T23:35:21,776 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:35:21,777 /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:35:21,777 1937 | std::__heap_select(__first, __middle, __last, __comp); 2022-09-21T23:35:21,777 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:35:22,032 /usr/include/c++/10/bits/stl_algo.h: In member function ‘void gemmi::Intensities::merge_in_place(gemmi::DataType)’: 2022-09-21T23:35:22,032 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:35:22,033 1974 | std::__introsort_loop(__first, __last, 2022-09-21T23:35:22,033 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2022-09-21T23:35:22,033 1975 | std::__lg(__last - __first) * 2, 2022-09-21T23:35:22,034 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:35:22,034 1976 | __comp); 2022-09-21T23:35:22,034 | ~~~~~~~ 2022-09-21T23:35:22,035 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:35:22,035 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2022-09-21T23:35:22,035 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:35:22,036 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:35:22,036 1891 | std::__insertion_sort(__first, __last, __comp); 2022-09-21T23:35:22,036 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:35:22,037 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:35:22,037 from include/gemmi/unitcell.hpp:10, 2022-09-21T23:35:22,037 from python/hkl.cpp:3: 2022-09-21T23:35:22,038 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:35:22,038 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:35:22,038 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:35:34,576 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:35:34,577 from include/gemmi/unitcell.hpp:10, 2022-09-21T23:35:34,577 from python/hkl.cpp:3: 2022-09-21T23:35:34,577 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Correlation&}; _Tp = gemmi::Correlation; _Alloc = std::allocator]’: 2022-09-21T23:35:34,578 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:35:34,578 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:35:34,578 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:35:34,579 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:35:34,722 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:35:34,722 from include/gemmi/unitcell.hpp:10, 2022-09-21T23:35:34,723 from python/hkl.cpp:3: 2022-09-21T23:35:34,723 /usr/include/c++/10/bits/stl_vector.h: In member function ‘bool pybind11::detail::list_caster::load(pybind11::handle, bool) [with Type = std::vector; Value = gemmi::Correlation]’: 2022-09-21T23:35:34,723 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:35:34,724 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:35:34,724 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:35:42,219 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/meta.cpp -o build/temp.linux-armv7l-cpython-39/python/meta.o -std=c++17 -fvisibility=hidden -g0 2022-09-21T23:37:38,692 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:37:38,693 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:37:38,694 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:37:38,694 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:37:38,695 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:37:38,695 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:37:38,695 from python/common.h:3, 2022-09-21T23:37:38,696 from python/meta.cpp:3: 2022-09-21T23:37:38,696 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::NcsOp&}; _Tp = gemmi::NcsOp; _Alloc = std::allocator]’: 2022-09-21T23:37:38,696 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:37:38,697 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:37:38,697 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:37:38,826 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::NcsOp; _Alloc = std::allocator]’: 2022-09-21T23:37:38,827 /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:37:38,827 130 | vector<_Tp, _Alloc>:: 2022-09-21T23:37:38,827 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:37:38,829 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:37:38,829 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2022-09-21T23:37:38,829 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:37:38,953 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::NcsOp; _Alloc = std::allocator]’: 2022-09-21T23:37:38,953 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:37:38,954 184 | vector<_Tp, _Alloc>:: 2022-09-21T23:37:38,954 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:37:38,954 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:37:39,044 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::NcsOp; _Alloc = std::allocator]’: 2022-09-21T23:37:39,044 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:37:39,045 171 | vector<_Tp, _Alloc>:: 2022-09-21T23:37:39,045 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:37:39,820 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator]’: 2022-09-21T23:37:39,821 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:37:39,821 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:37:39,822 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:37:40,135 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Connection; _Alloc = std::allocator]’: 2022-09-21T23:37:40,136 /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:37:40,136 130 | vector<_Tp, _Alloc>:: 2022-09-21T23:37:40,136 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:37:40,138 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:37:40,139 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2022-09-21T23:37:40,139 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:37:40,302 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Connection; _Alloc = std::allocator]’: 2022-09-21T23:37:40,302 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:37:40,303 184 | vector<_Tp, _Alloc>:: 2022-09-21T23:37:40,303 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:37:40,304 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:37:40,452 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Connection; _Alloc = std::allocator]’: 2022-09-21T23:37:40,453 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:37:40,453 171 | vector<_Tp, _Alloc>:: 2022-09-21T23:37:40,454 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:37:42,808 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]’: 2022-09-21T23:37:42,809 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:37:42,809 184 | vector<_Tp, _Alloc>:: 2022-09-21T23:37:42,810 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:37:42,810 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:37:42,955 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]’: 2022-09-21T23:37:42,956 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:37:42,956 171 | vector<_Tp, _Alloc>:: 2022-09-21T23:37:42,957 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:37:43,648 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Assembly; _Alloc = std::allocator]’: 2022-09-21T23:37:43,648 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:37:43,649 184 | vector<_Tp, _Alloc>:: 2022-09-21T23:37:43,649 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:37:43,649 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:37:43,870 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Assembly; _Alloc = std::allocator]’: 2022-09-21T23:37:43,871 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:37:43,871 171 | vector<_Tp, _Alloc>:: 2022-09-21T23:37:43,871 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:37:59,563 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:37:59,563 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:37:59,564 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:37:59,564 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:37:59,564 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:37:59,565 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:37:59,565 from python/common.h:3, 2022-09-21T23:37:59,565 from python/meta.cpp:3: 2022-09-21T23:37:59,566 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const T&)>, void, {std::vector >&, const gemmi::NcsOp&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:37:59,566 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:37:59,566 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:37:59,567 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:37:59,643 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, void, {std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:37:59,643 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:37:59,644 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:37:59,644 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:00,434 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const T&)>, void, {std::vector >&, const gemmi::Connection&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:00,435 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:00,435 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:38:00,435 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:38:00,504 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, void, {std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:00,504 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:00,505 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:38:00,505 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:02,043 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, void, {std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:02,044 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:02,044 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:38:02,045 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:02,547 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, void, {std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:02,547 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:02,547 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:38:02,548 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:07,299 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, std::vector*, {const std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:07,299 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:07,299 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:38:07,300 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:38:07,888 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, std::vector*, {const std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:07,889 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:07,889 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:38:07,890 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:38:35,252 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:38:35,252 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:38:35,253 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:38:35,253 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:38:35,253 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:38:35,254 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:38:35,254 from python/common.h:3, 2022-09-21T23:38:35,254 from python/meta.cpp:3: 2022-09-21T23:38:35,255 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator]’: 2022-09-21T23:38:35,255 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:38:35,255 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:38:35,256 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:35,382 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::execute, std::unique_ptr >, std::default_delete > > > >, {}>::, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:35,383 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:35,383 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:38:35,384 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:35,628 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const pybind11::iterable&)>, void, {std::vector >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:35,628 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:35,628 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:38:35,629 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:35,629 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:38:35,630 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:38:35,630 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:38:35,630 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:38:35,630 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:38:35,631 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:38:35,631 from python/common.h:3, 2022-09-21T23:38:35,631 from python/meta.cpp:3: 2022-09-21T23:38:35,632 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:35,632 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:38:35,632 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:35,982 In file included from python/common.h:3, 2022-09-21T23:38:35,982 from python/meta.cpp:3: 2022-09-21T23:38:35,983 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::detail::make_iterator_impl(Iterator, Sentinel, Extra&& ...) [with Access = pybind11::detail::iterator_access<__gnu_cxx::__normal_iterator >, gemmi::NcsOp&>; pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::NcsOp&; Extra = {}]’: 2022-09-21T23:38:35,983 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:35,983 2356 | iterator make_iterator_impl(Iterator first, Sentinel last, Extra &&...extra) { 2022-09-21T23:38:35,984 | ^~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:35,984 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:35,985 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:36,113 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:36,114 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2399:91: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:36,114 2399 | Extra...>(first, last, std::forward(extra)...); 2022-09-21T23:38:36,115 | ^ 2022-09-21T23:38:38,734 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:38:38,734 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:38:38,735 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:38:38,735 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:38:38,735 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:38:38,736 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:38:38,736 from python/common.h:3, 2022-09-21T23:38:38,736 from python/meta.cpp:3: 2022-09-21T23:38:38,737 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Connection}; _Tp = gemmi::Connection; _Alloc = std::allocator]’: 2022-09-21T23:38:38,737 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:38:38,737 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:38:38,738 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:39,323 /usr/include/c++/10/bits/vector.tcc: In function ‘pybind11::detail::vector_modifiers, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const pybind11::iterable&)>’: 2022-09-21T23:38:39,326 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:39,327 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:38:39,327 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:39,328 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:38:39,328 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:38:39,329 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:38:39,329 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:38:39,329 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:38:39,330 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:38:39,330 from python/common.h:3, 2022-09-21T23:38:39,330 from python/meta.cpp:3: 2022-09-21T23:38:39,331 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:39,331 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:38:39,332 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:40,251 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:38:40,252 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:38:40,252 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:38:40,253 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:38:40,253 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:38:40,253 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:38:40,254 from python/common.h:3, 2022-09-21T23:38:40,254 from python/meta.cpp:3: 2022-09-21T23:38:40,254 /usr/include/c++/10/bits/vector.tcc: In function ‘pybind11::detail::vector_modifiers, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::’: 2022-09-21T23:38:40,255 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:40,255 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:38:40,255 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:40,900 In file included from python/common.h:3, 2022-09-21T23:38:40,901 from python/meta.cpp:3: 2022-09-21T23:38:40,901 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::detail::make_iterator_impl(Iterator, Sentinel, Extra&& ...) [with Access = pybind11::detail::iterator_access<__gnu_cxx::__normal_iterator >, gemmi::Connection&>; pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::Connection&; Extra = {}]’: 2022-09-21T23:38:40,901 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:40,902 2356 | iterator make_iterator_impl(Iterator first, Sentinel last, Extra &&...extra) { 2022-09-21T23:38:40,902 | ^~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:40,903 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:40,903 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:41,032 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:41,032 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2399:91: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:41,033 2399 | Extra...>(first, last, std::forward(extra)...); 2022-09-21T23:38:41,033 | ^ 2022-09-21T23:38:48,294 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:38:48,295 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:38:48,295 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:38:48,295 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:38:48,296 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:38:48,296 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:38:48,296 from python/common.h:3, 2022-09-21T23:38:48,297 from python/meta.cpp:3: 2022-09-21T23:38:48,297 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Assembly::Operator}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]’: 2022-09-21T23:38:48,297 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:38:48,297 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:38:48,298 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:48,479 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::execute, std::unique_ptr >, std::default_delete > > > >, {}>::, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:48,480 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:48,480 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:38:48,481 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:48,777 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const pybind11::iterable&)>, void, {std::vector >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:48,777 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:48,777 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:38:48,778 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:48,780 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:38:48,780 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:38:48,780 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:38:48,781 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:38:48,781 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:38:48,781 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:38:48,782 from python/common.h:3, 2022-09-21T23:38:48,782 from python/meta.cpp:3: 2022-09-21T23:38:48,782 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:48,783 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:38:48,783 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:49,209 In file included from python/common.h:3, 2022-09-21T23:38:49,209 from python/meta.cpp:3: 2022-09-21T23:38:49,210 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::detail::make_iterator_impl(Iterator, Sentinel, Extra&& ...) [with Access = pybind11::detail::iterator_access<__gnu_cxx::__normal_iterator >, gemmi::Assembly::Operator&>; pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::Assembly::Operator&; Extra = {}]’: 2022-09-21T23:38:49,210 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:49,210 2356 | iterator make_iterator_impl(Iterator first, Sentinel last, Extra &&...extra) { 2022-09-21T23:38:49,210 | ^~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:49,211 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:49,212 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:49,343 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:49,344 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2399:91: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:49,344 2399 | Extra...>(first, last, std::forward(extra)...); 2022-09-21T23:38:49,344 | ^ 2022-09-21T23:38:49,977 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:38:49,977 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:38:49,977 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:38:49,978 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:38:49,978 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:38:49,978 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:38:49,979 from python/common.h:3, 2022-09-21T23:38:49,979 from python/meta.cpp:3: 2022-09-21T23:38:49,979 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Assembly}; _Tp = gemmi::Assembly; _Alloc = std::allocator]’: 2022-09-21T23:38:49,979 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:38:49,980 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:38:49,980 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:50,238 In file included from python/common.h:3, 2022-09-21T23:38:50,239 from python/meta.cpp:3: 2022-09-21T23:38:50,239 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::detail::make_iterator_impl(Iterator, Sentinel, Extra&& ...) [with Access = pybind11::detail::iterator_access<__gnu_cxx::__normal_iterator >, gemmi::Assembly&>; pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::Assembly&; Extra = {}]’: 2022-09-21T23:38:50,239 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:50,240 2356 | iterator make_iterator_impl(Iterator first, Sentinel last, Extra &&...extra) { 2022-09-21T23:38:50,240 | ^~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:50,240 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:50,241 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:50,372 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:50,373 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2399:91: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:50,373 2399 | Extra...>(first, last, std::forward(extra)...); 2022-09-21T23:38:50,374 | ^ 2022-09-21T23:38:50,540 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:38:50,541 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:38:50,541 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:38:50,541 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:38:50,542 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:38:50,542 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:38:50,542 from python/common.h:3, 2022-09-21T23:38:50,543 from python/meta.cpp:3: 2022-09-21T23:38:50,543 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, gemmi::Assembly, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:50,543 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:50,543 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:38:50,544 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:50,777 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, gemmi::Assembly::Operator, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:50,777 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:50,778 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:38:50,778 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:51,307 /usr/include/c++/10/bits/stl_vector.h: In function ‘pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, gemmi::Connection, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::’: 2022-09-21T23:38:51,307 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:51,308 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:38:51,308 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:51,411 In file included from python/meta.cpp:5: 2022-09-21T23:38:51,412 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType, const T&)>, void, {std::vector >&, int, const gemmi::Connection&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:51,412 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:198:21: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:38:51,413 198 | v.insert(v.begin() + i, x); 2022-09-21T23:38:51,413 | ~~~~~~~~^~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:51,708 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:38:51,708 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:38:51,709 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:38:51,709 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:38:51,709 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:38:51,709 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:38:51,710 from python/common.h:3, 2022-09-21T23:38:51,710 from python/meta.cpp:3: 2022-09-21T23:38:51,710 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, gemmi::NcsOp, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:51,711 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:51,711 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:38:51,711 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:51,813 In file included from python/meta.cpp:5: 2022-09-21T23:38:51,813 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType, const T&)>, void, {std::vector >&, int, const gemmi::NcsOp&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:51,814 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:198:21: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:38:51,814 198 | v.insert(v.begin() + i, x); 2022-09-21T23:38:51,815 | ~~~~~~~~^~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:52,320 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:38:52,321 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:38:52,321 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:38:52,321 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:38:52,322 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:38:52,322 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:38:52,322 from python/common.h:3, 2022-09-21T23:38:52,322 from python/meta.cpp:3: 2022-09-21T23:38:52,323 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, void, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:52,323 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:52,323 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:38:52,324 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:52,478 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, void, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:52,478 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:52,478 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:38:52,479 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:52,707 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, void, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:52,707 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:52,707 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:38:52,708 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:52,936 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, void, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:52,936 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:52,937 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:38:52,937 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:56,771 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:38:56,772 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:38:56,772 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:38:56,772 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:38:56,773 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:38:56,773 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:38:56,773 from python/common.h:3, 2022-09-21T23:38:56,774 from python/meta.cpp:3: 2022-09-21T23:38:56,774 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Assembly::Operator&}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]’: 2022-09-21T23:38:56,774 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:38:56,775 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:38:56,775 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:56,924 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:38:56,925 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:38:56,925 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:38:56,925 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:38:56,926 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:38:56,926 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:38:56,926 from python/common.h:3, 2022-09-21T23:38:56,927 from python/meta.cpp:3: 2022-09-21T23:38:56,927 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const T&)>, void, {std::vector >&, const gemmi::Assembly::Operator&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:56,927 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:56,928 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:38:56,928 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:38:57,058 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:38:57,059 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:38:57,059 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:38:57,060 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:38:57,060 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:38:57,060 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:38:57,061 from python/common.h:3, 2022-09-21T23:38:57,061 from python/meta.cpp:3: 2022-09-21T23:38:57,061 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]’: 2022-09-21T23:38:57,062 /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:38:57,062 130 | vector<_Tp, _Alloc>:: 2022-09-21T23:38:57,062 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:57,063 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:57,063 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2022-09-21T23:38:57,063 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:57,201 In file included from python/meta.cpp:5: 2022-09-21T23:38:57,201 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType, const T&)>, void, {std::vector >&, int, const gemmi::Assembly::Operator&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:57,202 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:198:21: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:38:57,202 198 | v.insert(v.begin() + i, x); 2022-09-21T23:38:57,202 | ~~~~~~~~^~~~~~~~~~~~~~~~~~ 2022-09-21T23:38:57,346 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:38:57,346 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:38:57,346 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:38:57,347 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:38:57,347 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:38:57,347 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:38:57,348 from python/common.h:3, 2022-09-21T23:38:57,348 from python/meta.cpp:3: 2022-09-21T23:38:57,348 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, std::vector*, {const std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:38:57,349 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:38:57,349 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:38:57,349 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:39:04,184 In file included from /usr/include/c++/10/memory:66, 2022-09-21T23:39:04,185 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:246, 2022-09-21T23:39:04,185 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:39:04,185 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:39:04,186 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:39:04,186 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:39:04,186 from python/common.h:3, 2022-09-21T23:39:04,186 from python/meta.cpp:3: 2022-09-21T23:39:04,187 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Assembly::Operator*; bool _TrivialValueTypes = false]’: 2022-09-21T23:39:04,187 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:04,187 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:39:04,188 | ^~~~~~~~~~~~~ 2022-09-21T23:39:04,188 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:04,341 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const std::vector&)>, void, {std::vector >&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:39:04,342 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:04,342 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:39:04,343 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:04,343 148 | && __is_trivial(_ValueType2) 2022-09-21T23:39:04,343 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:04,344 149 | && __assignable>:: 2022-09-21T23:39:04,344 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:04,344 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:39:04,344 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:04,345 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:04,345 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:39:04,345 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:04,346 148 | && __is_trivial(_ValueType2) 2022-09-21T23:39:04,346 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:04,346 149 | && __assignable>:: 2022-09-21T23:39:04,347 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:04,347 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:39:04,347 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:04,551 /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]’: 2022-09-21T23:39:04,552 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:04,552 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:39:04,553 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:04,553 148 | && __is_trivial(_ValueType2) 2022-09-21T23:39:04,553 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:04,553 149 | && __assignable>:: 2022-09-21T23:39:04,554 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:04,554 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:39:04,555 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:06,278 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:39:06,278 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:39:06,279 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:39:06,279 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:39:06,279 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:39:06,280 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:39:06,280 from python/common.h:3, 2022-09-21T23:39:06,280 from python/meta.cpp:3: 2022-09-21T23:39:06,281 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Assembly&}; _Tp = gemmi::Assembly; _Alloc = std::allocator]’: 2022-09-21T23:39:06,281 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:39:06,281 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:39:06,282 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:06,449 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:39:06,449 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:39:06,450 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:39:06,450 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:39:06,450 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:39:06,450 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:39:06,451 from python/common.h:3, 2022-09-21T23:39:06,451 from python/meta.cpp:3: 2022-09-21T23:39:06,451 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const T&)>, void, {std::vector >&, const gemmi::Assembly&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:39:06,452 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:06,452 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:39:06,452 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:39:06,661 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:39:06,661 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:39:06,661 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:39:06,662 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:39:06,662 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:39:06,662 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:39:06,663 from python/common.h:3, 2022-09-21T23:39:06,663 from python/meta.cpp:3: 2022-09-21T23:39:06,663 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Assembly; _Alloc = std::allocator]’: 2022-09-21T23:39:06,664 /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:39:06,664 130 | vector<_Tp, _Alloc>:: 2022-09-21T23:39:06,664 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:06,665 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:06,665 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2022-09-21T23:39:06,666 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:06,870 In file included from python/meta.cpp:5: 2022-09-21T23:39:06,871 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType, const T&)>, void, {std::vector >&, int, const gemmi::Assembly&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:39:06,871 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:198:21: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:39:06,871 198 | v.insert(v.begin() + i, x); 2022-09-21T23:39:06,872 | ~~~~~~~~^~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:06,995 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:39:06,995 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:39:06,996 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:39:06,996 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:39:06,996 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:39:06,997 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:39:06,997 from python/common.h:3, 2022-09-21T23:39:06,997 from python/meta.cpp:3: 2022-09-21T23:39:06,998 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::execute, std::unique_ptr >, std::default_delete > > > >, {}>::, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:39:06,998 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:06,998 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:39:06,999 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:07,544 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:39:07,545 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:39:07,545 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:39:07,545 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:39:07,546 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:39:07,546 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:39:07,546 from python/common.h:3, 2022-09-21T23:39:07,546 from python/meta.cpp:3: 2022-09-21T23:39:07,547 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, std::vector*, {const std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:39:07,547 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:07,547 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:39:07,548 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:39:07,951 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:39:07,951 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:39:07,952 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:39:07,952 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:39:07,952 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:39:07,953 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:39:07,953 from python/common.h:3, 2022-09-21T23:39:07,953 from python/meta.cpp:3: 2022-09-21T23:39:07,953 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const pybind11::iterable&)>, void, {std::vector >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:39:07,954 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:07,954 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:39:07,955 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:07,955 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:39:07,956 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:39:07,956 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:39:07,956 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:39:07,957 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:39:07,957 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:39:07,957 from python/common.h:3, 2022-09-21T23:39:07,958 from python/meta.cpp:3: 2022-09-21T23:39:07,958 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:07,958 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:39:07,958 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:08,398 In file included from /usr/include/c++/10/memory:66, 2022-09-21T23:39:08,398 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:246, 2022-09-21T23:39:08,398 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:39:08,399 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:39:08,399 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:39:08,399 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:39:08,400 from python/common.h:3, 2022-09-21T23:39:08,400 from python/meta.cpp:3: 2022-09-21T23:39:08,400 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::NcsOp*; bool _TrivialValueTypes = false]’: 2022-09-21T23:39:08,401 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:08,401 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:39:08,401 | ^~~~~~~~~~~~~ 2022-09-21T23:39:08,402 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:08,545 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const std::vector&)>, void, {std::vector >&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:39:08,545 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:08,546 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:39:08,546 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:08,546 148 | && __is_trivial(_ValueType2) 2022-09-21T23:39:08,547 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:08,547 149 | && __assignable>:: 2022-09-21T23:39:08,547 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:08,548 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:39:08,548 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:08,549 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:08,550 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:39:08,550 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:08,550 148 | && __is_trivial(_ValueType2) 2022-09-21T23:39:08,551 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:08,551 149 | && __assignable>:: 2022-09-21T23:39:08,551 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:08,552 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:39:08,552 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:08,862 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Connection*; bool _TrivialValueTypes = false]’: 2022-09-21T23:39:08,863 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:08,863 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:39:08,864 | ^~~~~~~~~~~~~ 2022-09-21T23:39:08,864 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:09,187 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::execute, std::unique_ptr >, std::default_delete > > > >, {char [17]}, 0>::&)>, void, {pybind11::detail::value_and_holder&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor, char [17]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:39:09,187 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:09,188 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:39:09,188 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:09,188 148 | && __is_trivial(_ValueType2) 2022-09-21T23:39:09,188 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:09,189 149 | && __assignable>:: 2022-09-21T23:39:09,189 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:09,189 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:39:09,190 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:09,327 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const std::vector&)>, void, {std::vector >&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:39:09,328 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:09,328 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:39:09,329 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:09,329 148 | && __is_trivial(_ValueType2) 2022-09-21T23:39:09,329 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:09,330 149 | && __assignable>:: 2022-09-21T23:39:09,330 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:09,330 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:39:09,331 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:09,331 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:09,331 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:39:09,332 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:09,332 148 | && __is_trivial(_ValueType2) 2022-09-21T23:39:09,332 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:09,332 149 | && __assignable>:: 2022-09-21T23:39:09,333 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:09,333 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:39:09,333 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:11,528 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Assembly*; bool _TrivialValueTypes = false]’: 2022-09-21T23:39:11,529 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:11,529 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:39:11,529 | ^~~~~~~~~~~~~ 2022-09-21T23:39:11,530 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:11,749 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const std::vector&)>, void, {std::vector >&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:39:11,750 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:11,750 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:39:11,751 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:11,751 148 | && __is_trivial(_ValueType2) 2022-09-21T23:39:11,751 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:11,752 149 | && __assignable>:: 2022-09-21T23:39:11,752 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:11,752 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:39:11,752 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:11,753 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:39:11,753 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:39:11,754 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:11,754 148 | && __is_trivial(_ValueType2) 2022-09-21T23:39:11,754 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:11,754 149 | && __assignable>:: 2022-09-21T23:39:11,755 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:11,755 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:39:11,755 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:39:15,001 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/mol.cpp -o build/temp.linux-armv7l-cpython-39/python/mol.o -std=c++17 -fvisibility=hidden -g0 2022-09-21T23:41:34,865 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:41:34,866 from /usr/include/c++/10/functional:62, 2022-09-21T23:41:34,866 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:41:34,867 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:41:34,867 from include/gemmi/model.hpp:8, 2022-09-21T23:41:34,868 from python/mol.cpp:3: 2022-09-21T23:41:34,868 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform&}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2022-09-21T23:41:34,868 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:41:34,868 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:41:34,869 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:41:34,962 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Transform}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2022-09-21T23:41:34,962 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:41:35,095 /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::add_ncs_images_to_cs_images(const std::vector&)’: 2022-09-21T23:41:35,096 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:41:35,096 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:41:35,097 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:41:35,097 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:41:35,098 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:41:35,098 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:41:35,221 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::FTransform&}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2022-09-21T23:41:35,222 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:41:35,222 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:41:35,222 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:41:36,828 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Atom; _Alloc = std::allocator]’: 2022-09-21T23:41:36,829 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:41:36,829 171 | vector<_Tp, _Alloc>:: 2022-09-21T23:41:36,830 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:41:36,905 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:41:36,906 from /usr/include/c++/10/functional:62, 2022-09-21T23:41:36,906 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:41:36,906 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:41:36,907 from include/gemmi/model.hpp:8, 2022-09-21T23:41:36,907 from python/mol.cpp:3: 2022-09-21T23:41:36,907 /usr/include/c++/10/bits/stl_vector.h: In function ‘void remove_child(P&, int) [with P = gemmi::Residue]’: 2022-09-21T23:41:36,908 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:41:36,908 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:41:36,908 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:41:37,067 /usr/include/c++/10/bits/stl_vector.h: In function ‘void gemmi::remove_alternative_conformations(T&) [with T = gemmi::Chain]’: 2022-09-21T23:41:37,068 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:41:37,068 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:41:37,069 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:41:38,186 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:41:38,186 from /usr/include/c++/10/functional:62, 2022-09-21T23:41:38,187 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:41:38,187 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:41:38,187 from include/gemmi/model.hpp:8, 2022-09-21T23:41:38,188 from python/mol.cpp:3: 2022-09-21T23:41:38,188 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Fractional&}; _Tp = gemmi::Fractional; _Alloc = std::allocator]’: 2022-09-21T23:41:38,188 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:41:38,189 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:41:38,189 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:41:38,439 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:41:38,439 from /usr/include/c++/10/functional:62, 2022-09-21T23:41:38,440 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:41:38,440 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:41:38,440 from include/gemmi/model.hpp:8, 2022-09-21T23:41:38,441 from python/mol.cpp:3: 2022-09-21T23:41:38,441 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::NeighborSearch::add_site(const gemmi::SmallStructure::Site&, int)’: 2022-09-21T23:41:38,441 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:41:38,441 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:41:38,442 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:41:40,025 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:41:40,026 from /usr/include/c++/10/functional:62, 2022-09-21T23:41:40,026 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:41:40,027 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:41:40,027 from include/gemmi/model.hpp:8, 2022-09-21T23:41:40,027 from python/mol.cpp:3: 2022-09-21T23:41:40,027 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator]’: 2022-09-21T23:41:40,028 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:41:40,028 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:41:40,028 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:41:47,236 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2022-09-21T23:41:47,236 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:41:47,236 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:41:47,306 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2022-09-21T23:41:47,306 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:41:47,306 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:41:47,307 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:41:47,938 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:41:47,939 from /usr/include/c++/10/functional:62, 2022-09-21T23:41:47,939 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:41:47,939 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:41:47,940 from include/gemmi/model.hpp:8, 2022-09-21T23:41:47,940 from python/mol.cpp:3: 2022-09-21T23:41:47,940 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::NeighborSearch::set_bounding_cell(const gemmi::UnitCell&)’: 2022-09-21T23:41:47,941 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:41:47,941 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:41:47,941 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:41:49,014 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:41:49,015 from /usr/include/c++/10/functional:62, 2022-09-21T23:41:49,015 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:41:49,016 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:41:49,016 from include/gemmi/model.hpp:8, 2022-09-21T23:41:49,016 from python/mol.cpp:3: 2022-09-21T23:41:49,017 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Atom; _Alloc = std::allocator]’: 2022-09-21T23:41:49,017 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:41:49,017 184 | vector<_Tp, _Alloc>:: 2022-09-21T23:41:49,017 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:41:49,018 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:41:49,018 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:41:49,114 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:41:49,114 from /usr/include/c++/10/functional:62, 2022-09-21T23:41:49,115 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:41:49,115 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:41:49,115 from include/gemmi/model.hpp:8, 2022-09-21T23:41:49,115 from python/mol.cpp:3: 2022-09-21T23:41:49,116 /usr/include/c++/10/bits/stl_vector.h: In function ‘void remove_children(P&, pybind11::slice) [with P = gemmi::Residue]’: 2022-09-21T23:41:49,116 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:41:49,116 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:41:49,117 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:41:49,117 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:41:49,117 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:41:49,118 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:41:49,278 /usr/include/c++/10/bits/stl_vector.h: In function ‘void gemmi::vector_remove_if(std::vector&, F&&) [with T = gemmi::Atom; F = gemmi::trim_to_alanine(gemmi::Residue&)::]’: 2022-09-21T23:41:49,278 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:41:49,279 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:41:49,279 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:41:49,715 /usr/include/c++/10/bits/stl_vector.h: In function ‘void gemmi::vector_remove_if(std::vector&, F&&) [with T = gemmi::Atom; F = gemmi::remove_hydrogens::]’: 2022-09-21T23:41:49,716 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:41:49,716 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:41:49,716 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:41:50,538 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::Selection::remove_not_selected(T&) const [with T = gemmi::Model]’: 2022-09-21T23:41:50,538 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:41:50,539 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:41:50,539 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:41:51,536 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::Selection::remove_selected(T&) const [with T = gemmi::Model]’: 2022-09-21T23:41:51,537 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:41:51,537 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:41:51,537 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:41:53,713 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:41:53,713 from /usr/include/c++/10/functional:62, 2022-09-21T23:41:53,714 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:41:53,714 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:41:53,715 from include/gemmi/model.hpp:8, 2022-09-21T23:41:53,715 from python/mol.cpp:3: 2022-09-21T23:41:53,715 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Selection::AtomInequality}; _Tp = gemmi::Selection::AtomInequality; _Alloc = std::allocator]’: 2022-09-21T23:41:53,715 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:41:53,716 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:41:53,716 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:41:56,323 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:41:56,324 from /usr/include/c++/10/functional:62, 2022-09-21T23:41:56,324 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:41:56,325 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:41:56,325 from include/gemmi/model.hpp:8, 2022-09-21T23:41:56,325 from python/mol.cpp:3: 2022-09-21T23:41:56,325 /usr/include/c++/10/bits/stl_vector.h: In function ‘void gemmi::expand_ncs(gemmi::Structure&, gemmi::HowToNameCopiedChain)’: 2022-09-21T23:41:56,326 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:41:56,326 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:41:56,326 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:42:04,819 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:42:04,819 from /usr/include/c++/10/functional:62, 2022-09-21T23:42:04,820 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:42:04,820 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:42:04,820 from include/gemmi/model.hpp:8, 2022-09-21T23:42:04,821 from python/mol.cpp:3: 2022-09-21T23:42:04,821 /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::impl::parse_cid(const string&, gemmi::Selection&)’: 2022-09-21T23:42:04,821 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:42:04,822 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:42:04,822 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:42:07,126 In file included from /usr/include/c++/10/vector:66, 2022-09-21T23:42:07,126 from /usr/include/c++/10/functional:62, 2022-09-21T23:42:07,127 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:42:07,127 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:42:07,127 from include/gemmi/model.hpp:8, 2022-09-21T23:42:07,128 from python/mol.cpp:3: 2022-09-21T23:42:07,128 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Connection*; bool _TrivialValueTypes = false]’: 2022-09-21T23:42:07,128 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:42:07,129 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:42:07,129 | ^~~~~~~~~~~~~ 2022-09-21T23:42:07,129 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:42:07,414 /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::Connection; _Alloc = std::allocator]’: 2022-09-21T23:42:07,415 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:42:07,415 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:42:07,415 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:42:07,416 148 | && __is_trivial(_ValueType2) 2022-09-21T23:42:07,416 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:42:07,416 149 | && __assignable>:: 2022-09-21T23:42:07,416 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:42:07,417 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:42:07,417 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:42:58,452 In file included from python/common.h:3, 2022-09-21T23:42:58,452 from python/mol.cpp:11: 2022-09-21T23:42:58,453 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::detail::make_iterator_impl(Iterator, Sentinel, Extra&& ...) [with Access = pybind11::detail::iterator_access, gemmi::Atom> >, gemmi::Atom&>; pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = gemmi::BidirIterator, gemmi::Atom> >; Sentinel = gemmi::BidirIterator, gemmi::Atom> >; ValueType = gemmi::Atom&; Extra = {}]’: 2022-09-21T23:42:58,453 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2022-09-21T23:42:58,454 2356 | iterator make_iterator_impl(Iterator first, Sentinel last, Extra &&...extra) { 2022-09-21T23:42:58,454 | ^~~~~~~~~~~~~~~~~~ 2022-09-21T23:42:58,455 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2022-09-21T23:42:58,455 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2022-09-21T23:42:58,648 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::make_iterator(Type&, Extra&& ...) [with pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Type = gemmi::FilterProxy; Extra = {}]’: 2022-09-21T23:42:58,648 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2399:91: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2022-09-21T23:42:58,649 2399 | Extra...>(first, last, std::forward(extra)...); 2022-09-21T23:42:58,649 | ^ 2022-09-21T23:42:58,650 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2399:91: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2022-09-21T23:43:00,054 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::detail::make_iterator_impl(Iterator, Sentinel, Extra&& ...) [with Access = pybind11::detail::iterator_access<__gnu_cxx::__normal_iterator >, const gemmi::Atom&>; pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = const gemmi::Atom&; Extra = {}]’: 2022-09-21T23:43:00,055 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:00,055 2356 | iterator make_iterator_impl(Iterator first, Sentinel last, Extra &&...extra) { 2022-09-21T23:43:00,056 | ^~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:00,056 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:00,246 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::iterator, {const gemmi::Residue&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:43:00,246 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2399:91: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:00,247 2399 | Extra...>(first, last, std::forward(extra)...); 2022-09-21T23:43:00,247 | ^ 2022-09-21T23:43:01,597 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::detail::make_iterator_impl(Iterator, Sentinel, Extra&& ...) [with Access = pybind11::detail::iterator_access, gemmi::Atom> >, gemmi::Atom&>; pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = gemmi::BidirIterator, gemmi::Atom> >; Sentinel = gemmi::BidirIterator, gemmi::Atom> >; ValueType = gemmi::Atom&; Extra = {}]’: 2022-09-21T23:43:01,597 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2022-09-21T23:43:01,598 2356 | iterator make_iterator_impl(Iterator first, Sentinel last, Extra &&...extra) { 2022-09-21T23:43:01,598 | ^~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:01,598 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2022-09-21T23:43:01,787 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize&)>, pybind11::iterator, {gemmi::UniqProxy > >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:43:01,787 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2399:91: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2022-09-21T23:43:01,787 2399 | Extra...>(first, last, std::forward(extra)...); 2022-09-21T23:43:01,788 | ^ 2022-09-21T23:43:01,788 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2399:91: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2022-09-21T23:43:01,789 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2399:91: note: parameter passing for argument of type ‘gemmi::BidirIterator, gemmi::Atom> >’ changed in GCC 7.1 2022-09-21T23:43:25,005 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:43:25,006 from /usr/include/c++/10/functional:62, 2022-09-21T23:43:25,006 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:43:25,007 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:43:25,007 from include/gemmi/model.hpp:8, 2022-09-21T23:43:25,007 from python/mol.cpp:3: 2022-09-21T23:43:25,008 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Atom}; _Tp = gemmi::Atom; _Alloc = std::allocator]’: 2022-09-21T23:43:25,008 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:43:25,008 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:43:25,008 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:25,009 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:43:25,256 /usr/include/c++/10/bits/vector.tcc: In function ‘C& add_child(P&, C, int) [with P = gemmi::Residue; C = gemmi::Atom]’: 2022-09-21T23:43:25,257 /usr/include/c++/10/bits/vector.tcc:356:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:25,257 356 | _M_realloc_insert(begin() + __n, std::move(__v)); 2022-09-21T23:43:25,257 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:25,545 /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::Selection::add_matching_children(const T&, T&) const [with T = gemmi::Chain]’: 2022-09-21T23:43:25,545 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:25,546 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:43:25,546 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:29,090 In file included from /usr/include/c++/10/vector:66, 2022-09-21T23:43:29,090 from /usr/include/c++/10/functional:62, 2022-09-21T23:43:29,090 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:43:29,091 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:43:29,091 from include/gemmi/model.hpp:8, 2022-09-21T23:43:29,091 from python/mol.cpp:3: 2022-09-21T23:43:29,092 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::ExperimentInfo*; bool _TrivialValueTypes = false]’: 2022-09-21T23:43:29,092 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:29,092 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:43:29,093 | ^~~~~~~~~~~~~ 2022-09-21T23:43:29,093 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:29,388 /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::ExperimentInfo; _Alloc = std::allocator]’: 2022-09-21T23:43:29,389 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:29,389 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:43:29,390 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:29,390 148 | && __is_trivial(_ValueType2) 2022-09-21T23:43:29,390 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:29,390 149 | && __assignable>:: 2022-09-21T23:43:29,391 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:29,391 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:43:29,391 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:30,283 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:43:30,284 from /usr/include/c++/10/functional:62, 2022-09-21T23:43:30,284 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:43:30,284 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:43:30,285 from include/gemmi/model.hpp:8, 2022-09-21T23:43:30,285 from python/mol.cpp:3: 2022-09-21T23:43:30,285 /usr/include/c++/10/bits/stl_vector.h: In function ‘void gemmi::merge_atoms_in_expanded_model(gemmi::Model&, const gemmi::UnitCell&, double)’: 2022-09-21T23:43:30,286 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:30,286 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:43:30,286 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:31,192 /usr/include/c++/10/bits/stl_vector.h: In function ‘void gemmi::transform_to_assembly(gemmi::Structure&, const string&, gemmi::HowToNameCopiedChain, std::ostream*)’: 2022-09-21T23:43:31,192 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:31,192 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:43:31,193 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:43:32,342 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, void, {gemmi::Residue&, const std::__cxx11::basic_string, std::allocator >&, char, gemmi::Element}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, pybind11::arg_v}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:43:32,342 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:32,343 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:43:32,343 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:35,132 In file included from /usr/include/c++/10/vector:66, 2022-09-21T23:43:35,132 from /usr/include/c++/10/functional:62, 2022-09-21T23:43:35,132 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:43:35,133 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:43:35,133 from include/gemmi/model.hpp:8, 2022-09-21T23:43:35,133 from python/mol.cpp:3: 2022-09-21T23:43:35,134 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Assembly*; bool _TrivialValueTypes = false]’: 2022-09-21T23:43:35,134 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:35,135 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:43:35,135 | ^~~~~~~~~~~~~ 2022-09-21T23:43:35,135 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:35,382 /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::Assembly; _Alloc = std::allocator]’: 2022-09-21T23:43:35,382 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:35,382 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:43:35,383 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:35,383 148 | && __is_trivial(_ValueType2) 2022-09-21T23:43:35,383 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:35,384 149 | && __assignable>:: 2022-09-21T23:43:35,384 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:35,384 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:43:35,385 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:35,596 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static void* pybind11::detail::type_caster_base::make_copy_constructor, void>::::_FUN(const void*)’: 2022-09-21T23:43:35,597 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:35,597 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:43:35,597 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:35,598 148 | && __is_trivial(_ValueType2) 2022-09-21T23:43:35,598 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:35,598 149 | && __assignable>:: 2022-09-21T23:43:35,599 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:35,599 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:43:35,599 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:36,913 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::CrystalInfo*; bool _TrivialValueTypes = false]’: 2022-09-21T23:43:36,913 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:36,914 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:43:36,914 | ^~~~~~~~~~~~~ 2022-09-21T23:43:36,915 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:37,343 /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::CrystalInfo; _Alloc = std::allocator]’: 2022-09-21T23:43:37,343 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:37,344 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:43:37,344 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:37,344 148 | && __is_trivial(_ValueType2) 2022-09-21T23:43:37,345 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:37,345 149 | && __assignable>:: 2022-09-21T23:43:37,345 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:37,346 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:43:37,346 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:37,915 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::TlsGroup*; bool _TrivialValueTypes = false]’: 2022-09-21T23:43:37,915 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:37,915 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:43:37,916 | ^~~~~~~~~~~~~ 2022-09-21T23:43:37,916 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:38,150 /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::RefinementInfo::RefinementInfo(const gemmi::RefinementInfo&)’: 2022-09-21T23:43:38,150 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:38,150 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:43:38,151 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:38,151 148 | && __is_trivial(_ValueType2) 2022-09-21T23:43:38,151 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:38,152 149 | && __assignable>:: 2022-09-21T23:43:38,152 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:38,152 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:43:38,153 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:38,388 /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Metadata::Metadata(const gemmi::Metadata&)’: 2022-09-21T23:43:38,388 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:38,389 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:43:38,389 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:38,389 148 | && __is_trivial(_ValueType2) 2022-09-21T23:43:38,390 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:38,390 149 | && __assignable>:: 2022-09-21T23:43:38,390 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:38,391 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:43:38,391 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:38,391 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:38,392 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:43:38,392 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:38,392 148 | && __is_trivial(_ValueType2) 2022-09-21T23:43:38,392 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:38,393 149 | && __assignable>:: 2022-09-21T23:43:38,393 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:38,393 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:43:38,394 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:38,792 /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Structure::Structure(const gemmi::Structure&)’: 2022-09-21T23:43:38,793 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:38,793 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:43:38,793 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:38,794 148 | && __is_trivial(_ValueType2) 2022-09-21T23:43:38,794 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:38,794 149 | && __assignable>:: 2022-09-21T23:43:38,795 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:38,795 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:43:38,795 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:39,487 /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::TlsGroup; _Alloc = std::allocator]’: 2022-09-21T23:43:39,487 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:43:39,488 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:43:39,488 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:39,488 148 | && __is_trivial(_ValueType2) 2022-09-21T23:43:39,489 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:39,489 149 | && __assignable>:: 2022-09-21T23:43:39,489 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:39,489 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:43:39,490 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:43:43,597 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/monlib.cpp -o build/temp.linux-armv7l-cpython-39/python/monlib.o -std=c++17 -fvisibility=hidden -g0 2022-09-21T23:45:01,451 In file included from /usr/include/c++/10/bits/stl_tree.h:63, 2022-09-21T23:45:01,452 from /usr/include/c++/10/map:60, 2022-09-21T23:45:01,452 from include/gemmi/monlib.hpp:10, 2022-09-21T23:45:01,452 from python/monlib.cpp:3: 2022-09-21T23:45:01,453 /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]’: 2022-09-21T23:45:01,453 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:45:01,453 1921 | __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, 2022-09-21T23:45:01,454 | ^~~~~~~~~ 2022-09-21T23:45:01,454 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:45:20,907 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:45:20,908 from include/gemmi/monlib.hpp:12, 2022-09-21T23:45:20,909 from python/monlib.cpp:3: 2022-09-21T23:45:20,909 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Plane}; _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator]’: 2022-09-21T23:45:20,909 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:45:20,910 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:45:20,910 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:45:21,026 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Restraints::Plane}; _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator]’: 2022-09-21T23:45:21,027 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:45:21,027 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:45:21,028 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:45:21,385 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Bond}; _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2022-09-21T23:45:21,385 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:45:21,385 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:45:21,386 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:45:21,537 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Restraints::Bond}; _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2022-09-21T23:45:21,537 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:45:21,538 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:45:21,538 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:45:21,693 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Angle}; _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator]’: 2022-09-21T23:45:21,694 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:45:21,694 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:45:21,695 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:45:21,869 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Restraints::Angle}; _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator]’: 2022-09-21T23:45:21,869 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:45:21,870 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:45:21,870 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:45:22,114 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Torsion}; _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator]’: 2022-09-21T23:45:22,114 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:45:22,115 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:45:22,115 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:45:22,364 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Restraints::Torsion}; _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator]’: 2022-09-21T23:45:22,364 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:45:22,365 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:45:22,365 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:45:27,866 In file included from /usr/include/c++/10/bits/stl_tree.h:63, 2022-09-21T23:45:27,867 from /usr/include/c++/10/map:60, 2022-09-21T23:45:27,867 from include/gemmi/monlib.hpp:10, 2022-09-21T23:45:27,868 from python/monlib.cpp:3: 2022-09-21T23:45:27,868 /usr/include/c++/10/bits/stl_algobase.h: In function ‘gemmi::Restraints gemmi::read_restraint_modifications(const gemmi::cif::Block&)’: 2022-09-21T23:45:27,868 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:45:27,869 1974 | return __find_if(__first, __last, __pred, 2022-09-21T23:45:27,869 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:45:27,869 1975 | std::__iterator_category(__first)); 2022-09-21T23:45:27,870 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:45:28,933 /usr/include/c++/10/bits/stl_algobase.h: In function ‘gemmi::Restraints gemmi::read_link_restraints(const gemmi::cif::Block&)’: 2022-09-21T23:45:28,934 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:45:28,934 1974 | return __find_if(__first, __last, __pred, 2022-09-21T23:45:28,935 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:45:28,935 1975 | std::__iterator_category(__first)); 2022-09-21T23:45:28,935 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:45:30,756 /usr/include/c++/10/bits/stl_algobase.h: In function ‘gemmi::ChemComp gemmi::make_chemcomp_from_block(const gemmi::cif::Block&)’: 2022-09-21T23:45:30,757 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:45:30,757 1974 | return __find_if(__first, __last, __pred, 2022-09-21T23:45:30,757 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:45:30,758 1975 | std::__iterator_category(__first)); 2022-09-21T23:45:30,758 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:46:19,949 In file included from /usr/include/c++/10/vector:66, 2022-09-21T23:46:19,949 from include/gemmi/monlib.hpp:12, 2022-09-21T23:46:19,949 from python/monlib.cpp:3: 2022-09-21T23:46:19,950 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Restraints::Plane*; bool _TrivialValueTypes = false]’: 2022-09-21T23:46:19,950 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:46:19,951 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:46:19,951 | ^~~~~~~~~~~~~ 2022-09-21T23:46:19,951 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:46:20,236 /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Restraints::Restraints(const gemmi::Restraints&)’: 2022-09-21T23:46:20,237 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:46:20,237 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:46:20,237 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:46:20,238 148 | && __is_trivial(_ValueType2) 2022-09-21T23:46:20,238 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:46:20,238 149 | && __assignable>:: 2022-09-21T23:46:20,238 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:46:20,239 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:46:20,239 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:46:23,957 /usr/include/c++/10/bits/stl_uninitialized.h: In function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator]’: 2022-09-21T23:46:23,957 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:46:23,958 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:46:23,958 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:46:23,958 148 | && __is_trivial(_ValueType2) 2022-09-21T23:46:23,959 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:46:23,959 149 | && __assignable>:: 2022-09-21T23:46:23,959 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:46:23,960 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:46:23,960 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:46:28,968 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/mtz.cpp -o build/temp.linux-armv7l-cpython-39/python/mtz.o -std=c++17 -fvisibility=hidden -g0 2022-09-21T23:48:19,655 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:48:19,656 from /usr/include/c++/10/functional:62, 2022-09-21T23:48:19,656 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:48:19,656 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:48:19,657 from include/gemmi/mtz.hpp:13, 2022-09-21T23:48:19,657 from python/mtz.cpp:3: 2022-09-21T23:48:19,657 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2022-09-21T23:48:19,658 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:48:19,658 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:48:19,658 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:48:19,725 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2022-09-21T23:48:19,725 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:48:19,726 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:48:19,726 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:48:20,719 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Mtz::Dataset}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator]’: 2022-09-21T23:48:20,720 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:48:20,720 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:48:20,720 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:48:20,940 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Mtz::Dataset}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator]’: 2022-09-21T23:48:20,941 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:48:20,941 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:48:20,941 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:48:27,487 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Mtz::Dataset&}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator]’: 2022-09-21T23:48:27,487 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:48:27,488 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:48:27,488 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:48:27,857 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator]’: 2022-09-21T23:48:27,857 /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:48:27,857 130 | vector<_Tp, _Alloc>:: 2022-09-21T23:48:27,858 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:48:27,861 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:48:27,862 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2022-09-21T23:48:27,862 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:48:28,152 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator]’: 2022-09-21T23:48:28,152 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:48:28,153 184 | vector<_Tp, _Alloc>:: 2022-09-21T23:48:28,153 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:48:28,154 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:48:28,420 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator]’: 2022-09-21T23:48:28,421 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:48:28,421 171 | vector<_Tp, _Alloc>:: 2022-09-21T23:48:28,421 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:48:31,427 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator]’: 2022-09-21T23:48:31,428 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:48:31,428 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:48:31,429 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:48:31,429 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:48:31,655 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::Mtz::Dataset; _Alloc = std::allocator]’: 2022-09-21T23:48:31,656 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:48:31,656 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:48:31,656 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:48:46,378 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:48:46,379 from /usr/include/c++/10/functional:62, 2022-09-21T23:48:46,379 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:48:46,379 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:48:46,380 from include/gemmi/mtz.hpp:13, 2022-09-21T23:48:46,380 from python/mtz.cpp:3: 2022-09-21T23:48:46,380 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, void, {std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:48:46,380 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:48:46,381 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:48:46,381 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:48:46,698 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const T&)>, void, {std::vector >&, const gemmi::Mtz::Dataset&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:48:46,699 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:48:46,699 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:48:46,699 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:48:49,868 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:48:49,869 from /usr/include/c++/10/functional:62, 2022-09-21T23:48:49,869 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:48:49,869 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:48:49,870 from include/gemmi/mtz.hpp:13, 2022-09-21T23:48:49,870 from python/mtz.cpp:3: 2022-09-21T23:48:49,870 /usr/include/c++/10/bits/vector.tcc: In function ‘pybind11::detail::vector_modifiers, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const pybind11::iterable&)>’: 2022-09-21T23:48:49,871 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:48:49,871 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:48:49,871 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:48:49,872 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:48:49,872 from /usr/include/c++/10/functional:62, 2022-09-21T23:48:49,872 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:48:49,873 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:48:49,873 from include/gemmi/mtz.hpp:13, 2022-09-21T23:48:49,873 from python/mtz.cpp:3: 2022-09-21T23:48:49,873 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:48:49,874 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:48:49,874 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:48:54,452 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:48:54,452 from /usr/include/c++/10/functional:62, 2022-09-21T23:48:54,453 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:48:54,453 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:48:54,453 from include/gemmi/mtz.hpp:13, 2022-09-21T23:48:54,454 from python/mtz.cpp:3: 2022-09-21T23:48:54,454 /usr/include/c++/10/bits/vector.tcc: In function ‘pybind11::detail::vector_modifiers, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::’: 2022-09-21T23:48:54,455 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:48:54,455 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:48:54,455 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:48:55,873 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:48:55,873 from /usr/include/c++/10/functional:62, 2022-09-21T23:48:55,874 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:48:55,874 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:48:55,874 from include/gemmi/mtz.hpp:13, 2022-09-21T23:48:55,875 from python/mtz.cpp:3: 2022-09-21T23:48:55,875 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, std::vector*, {const std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:48:55,875 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:48:55,876 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:48:55,876 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:49:22,798 /usr/include/c++/10/bits/stl_vector.h: In function ‘pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, gemmi::Mtz::Dataset, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::’: 2022-09-21T23:49:22,798 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:49:22,799 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:49:22,799 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:49:22,904 In file included from python/mtz.cpp:11: 2022-09-21T23:49:22,905 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType, const T&)>, void, {std::vector >&, int, const gemmi::Mtz::Dataset&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:49:22,905 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:198:21: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:49:22,906 198 | v.insert(v.begin() + i, x); 2022-09-21T23:49:22,906 | ~~~~~~~~^~~~~~~~~~~~~~~~~~ 2022-09-21T23:49:23,542 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:49:23,543 from /usr/include/c++/10/functional:62, 2022-09-21T23:49:23,543 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:49:23,544 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:49:23,544 from include/gemmi/mtz.hpp:13, 2022-09-21T23:49:23,544 from python/mtz.cpp:3: 2022-09-21T23:49:23,545 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, void, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:49:23,545 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:49:23,545 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:49:23,546 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:49:24,728 In file included from python/common.h:3, 2022-09-21T23:49:24,729 from python/mtz.cpp:9: 2022-09-21T23:49:24,729 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::detail::make_iterator_impl(Iterator, Sentinel, Extra&& ...) [with Access = pybind11::detail::iterator_access<__gnu_cxx::__normal_iterator >, gemmi::Mtz::Dataset&>; pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::Mtz::Dataset&; Extra = {}]’: 2022-09-21T23:49:24,730 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:49:24,730 2356 | iterator make_iterator_impl(Iterator first, Sentinel last, Extra &&...extra) { 2022-09-21T23:49:24,730 | ^~~~~~~~~~~~~~~~~~ 2022-09-21T23:49:24,731 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:49:24,731 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:49:24,929 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:49:24,930 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2399:91: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:49:24,930 2399 | Extra...>(first, last, std::forward(extra)...); 2022-09-21T23:49:24,931 | ^ 2022-09-21T23:49:34,083 In file included from /usr/include/c++/10/vector:66, 2022-09-21T23:49:34,083 from /usr/include/c++/10/functional:62, 2022-09-21T23:49:34,084 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:49:34,084 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:49:34,084 from include/gemmi/mtz.hpp:13, 2022-09-21T23:49:34,085 from python/mtz.cpp:3: 2022-09-21T23:49:34,085 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Mtz::Dataset*; bool _TrivialValueTypes = false]’: 2022-09-21T23:49:34,085 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:49:34,086 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:49:34,086 | ^~~~~~~~~~~~~ 2022-09-21T23:49:34,087 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:49:34,268 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::execute, std::unique_ptr >, std::default_delete > > > >, {char [17]}, 0>::&)>, void, {pybind11::detail::value_and_holder&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor, char [17]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:49:34,269 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:49:34,269 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:49:34,269 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:49:34,270 148 | && __is_trivial(_ValueType2) 2022-09-21T23:49:34,270 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:49:34,270 149 | && __assignable>:: 2022-09-21T23:49:34,270 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:49:34,271 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:49:34,271 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:49:34,398 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const std::vector&)>, void, {std::vector >&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:49:34,398 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:49:34,399 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:49:34,399 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:49:34,399 148 | && __is_trivial(_ValueType2) 2022-09-21T23:49:34,400 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:49:34,400 149 | && __assignable>:: 2022-09-21T23:49:34,400 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:49:34,401 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:49:34,401 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:49:34,401 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:49:34,402 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:49:34,402 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:49:34,402 148 | && __is_trivial(_ValueType2) 2022-09-21T23:49:34,403 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:49:34,403 149 | && __assignable>:: 2022-09-21T23:49:34,403 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:49:34,403 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:49:34,404 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:49:34,647 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::def_readwrite, {}>::::type&, const std::vector&)>, void, {gemmi::Mtz&, const std::vector >&}, {pybind11::is_method}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:49:34,648 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:49:34,648 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:49:34,648 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:49:34,649 148 | && __is_trivial(_ValueType2) 2022-09-21T23:49:34,649 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:49:34,649 149 | && __assignable>:: 2022-09-21T23:49:34,650 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:49:34,650 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:49:34,650 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:50:01,392 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/read.cpp -o build/temp.linux-armv7l-cpython-39/python/read.o -std=c++17 -fvisibility=hidden -g0 2022-09-21T23:51:38,486 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:51:38,487 from /usr/include/c++/10/functional:62, 2022-09-21T23:51:38,487 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:51:38,488 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:51:38,488 from include/gemmi/third_party/fast_float.h:1647, 2022-09-21T23:51:38,488 from include/gemmi/numb.hpp:14, 2022-09-21T23:51:38,489 from python/read.cpp:3: 2022-09-21T23:51:38,489 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform&}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2022-09-21T23:51:38,489 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:38,490 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:51:38,490 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:38,587 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Transform}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2022-09-21T23:51:38,587 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:38,788 /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::add_ncs_images_to_cs_images(const std::vector&)’: 2022-09-21T23:51:38,788 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:51:38,789 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:51:38,789 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:38,791 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:51:38,791 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:51:38,792 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:39,018 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::SmallStructure::AtomType&}; _Tp = gemmi::SmallStructure::AtomType; _Alloc = std::allocator]’: 2022-09-21T23:51:39,019 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:39,019 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:51:39,019 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:40,606 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::TlsGroup; _Alloc = std::allocator]’: 2022-09-21T23:51:40,606 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:40,607 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:41,255 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::RefinementInfo; _Alloc = std::allocator]’: 2022-09-21T23:51:41,256 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:41,620 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::RefinementInfo; _Alloc = std::allocator]’: 2022-09-21T23:51:41,620 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:51:41,620 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:51:41,621 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:41,693 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::BasicRefinementInfo; _Alloc = std::allocator]’: 2022-09-21T23:51:41,693 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:41,694 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:51:41,694 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:41,912 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator]’: 2022-09-21T23:51:41,913 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:42,070 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::CrystalInfo; _Alloc = std::allocator]’: 2022-09-21T23:51:42,071 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:51:42,071 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:51:42,071 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:42,488 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator]’: 2022-09-21T23:51:42,489 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:42,489 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:51:42,489 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:42,966 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::DiffractionInfo; _Alloc = std::allocator]’: 2022-09-21T23:51:42,966 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:51:42,966 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:51:42,967 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:43,087 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::ExperimentInfo; _Alloc = std::allocator]’: 2022-09-21T23:51:43,087 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:43,088 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:51:43,088 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:43,240 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::ExperimentInfo; _Alloc = std::allocator]’: 2022-09-21T23:51:43,241 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:51:43,241 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:51:43,241 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:43,292 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::ReflectionsInfo; _Alloc = std::allocator]’: 2022-09-21T23:51:43,293 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:43,293 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:51:43,293 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:45,065 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]’: 2022-09-21T23:51:45,065 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:45,196 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]’: 2022-09-21T23:51:45,197 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:51:45,197 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:51:45,197 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:45,504 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator]’: 2022-09-21T23:51:45,504 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:45,505 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:51:45,505 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:46,090 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator]’: 2022-09-21T23:51:46,090 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:46,267 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator]’: 2022-09-21T23:51:46,268 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:51:46,268 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:51:46,268 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:53,078 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2022-09-21T23:51:53,079 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:53,079 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:51:53,079 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:53,080 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:53,266 /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const gemmi::SpaceGroup*)’: 2022-09-21T23:51:53,266 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:51:53,267 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:51:53,267 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:53,646 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::SmallStructure::Site; _Alloc = std::allocator]’: 2022-09-21T23:51:53,646 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:53,647 184 | vector<_Tp, _Alloc>:: 2022-09-21T23:51:53,647 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:53,647 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:53,648 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:53,818 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:51:53,818 from /usr/include/c++/10/functional:62, 2022-09-21T23:51:53,819 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:51:53,819 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:51:53,819 from include/gemmi/third_party/fast_float.h:1647, 2022-09-21T23:51:53,820 from include/gemmi/numb.hpp:14, 2022-09-21T23:51:53,820 from python/read.cpp:3: 2022-09-21T23:51:53,820 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::SmallStructure::remove_hydrogens()’: 2022-09-21T23:51:53,820 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:51:53,821 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:51:53,821 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:54,020 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:51:54,020 from /usr/include/c++/10/functional:62, 2022-09-21T23:51:54,020 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:51:54,021 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:51:54,021 from include/gemmi/third_party/fast_float.h:1647, 2022-09-21T23:51:54,021 from include/gemmi/numb.hpp:14, 2022-09-21T23:51:54,022 from python/read.cpp:3: 2022-09-21T23:51:54,022 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::SmallStructure::Site}; _Tp = gemmi::SmallStructure::Site; _Alloc = std::allocator]’: 2022-09-21T23:51:54,022 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:54,023 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:51:54,023 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:54,023 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:54,265 /usr/include/c++/10/bits/vector.tcc: In function ‘gemmi::SmallStructure gemmi::mx_to_sx_structure(const gemmi::Structure&, int)’: 2022-09-21T23:51:54,265 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:51:54,266 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:51:54,266 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:56,053 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator]’: 2022-09-21T23:51:56,054 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:56,054 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:51:56,054 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:56,469 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::Connection&}; _Tp = gemmi::Connection; _Alloc = std::allocator]’: 2022-09-21T23:51:56,469 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:51:56,470 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:51:56,470 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:57,753 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >}; _Tp = gemmi::Assembly; _Alloc = std::allocator]’: 2022-09-21T23:51:57,754 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:57,755 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:51:57,755 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:57,931 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >}; _Tp = gemmi::Assembly; _Alloc = std::allocator]’: 2022-09-21T23:51:57,932 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:51:57,932 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:51:57,932 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:58,238 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator]’: 2022-09-21T23:51:58,238 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:51:58,238 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:51:58,239 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:51:58,331 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gemmi::NcsOp}; _Tp = gemmi::NcsOp; _Alloc = std::allocator]’: 2022-09-21T23:51:58,332 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:51:58,332 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:51:58,332 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:52:02,566 /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::impl::read_connectivity(gemmi::cif::Block&, gemmi::Structure&)’: 2022-09-21T23:52:02,567 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:02,567 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:52:02,568 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:52:04,034 /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::pdb_impl::read_remark_200_230_240(const char*, gemmi::Metadata&, std::string*&)’: 2022-09-21T23:52:04,035 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:04,035 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:52:04,036 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:52:06,406 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::SmallStructure::Site&}; _Tp = gemmi::SmallStructure::Site; _Alloc = std::allocator]’: 2022-09-21T23:52:06,406 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:52:06,407 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:52:06,407 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:52:06,702 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = gemmi::SmallStructure::Site; _Alloc = std::allocator]’: 2022-09-21T23:52:06,702 /usr/include/c++/10/bits/vector.tcc:130:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:52:06,703 130 | vector<_Tp, _Alloc>:: 2022-09-21T23:52:06,703 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:52:06,706 /usr/include/c++/10/bits/vector.tcc:161:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:06,707 161 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2022-09-21T23:52:06,707 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:52:06,989 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:52:06,990 from /usr/include/c++/10/functional:62, 2022-09-21T23:52:06,990 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:52:06,990 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:52:06,991 from include/gemmi/third_party/fast_float.h:1647, 2022-09-21T23:52:06,991 from include/gemmi/numb.hpp:14, 2022-09-21T23:52:06,991 from python/read.cpp:3: 2022-09-21T23:52:06,992 /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector gemmi::SmallStructure::get_all_unit_cell_sites() const’: 2022-09-21T23:52:06,992 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:06,992 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:52:06,993 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:52:06,993 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:06,993 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:52:06,994 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:52:07,628 /usr/include/c++/10/bits/stl_vector.h: In function ‘gemmi::SmallStructure gemmi::make_small_structure_from_block(const gemmi::cif::Block&)’: 2022-09-21T23:52:07,629 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:07,629 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:52:07,630 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:52:07,637 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:07,637 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:52:07,637 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:52:15,757 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:52:15,757 from /usr/include/c++/10/functional:62, 2022-09-21T23:52:15,758 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:52:15,758 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:52:15,758 from include/gemmi/third_party/fast_float.h:1647, 2022-09-21T23:52:15,759 from include/gemmi/numb.hpp:14, 2022-09-21T23:52:15,759 from python/read.cpp:3: 2022-09-21T23:52:15,759 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Assembly::Operator&}; _Tp = gemmi::Assembly::Operator; _Alloc = std::allocator]’: 2022-09-21T23:52:15,760 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:52:15,760 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:52:15,760 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:52:16,269 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:52:16,270 from /usr/include/c++/10/functional:62, 2022-09-21T23:52:16,270 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:52:16,270 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:52:16,271 from include/gemmi/third_party/fast_float.h:1647, 2022-09-21T23:52:16,271 from include/gemmi/numb.hpp:14, 2022-09-21T23:52:16,271 from python/read.cpp:3: 2022-09-21T23:52:16,272 /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector gemmi::impl::read_assemblies(gemmi::cif::Block&)’: 2022-09-21T23:52:16,272 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:16,272 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:52:16,273 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:52:19,879 /usr/include/c++/10/bits/stl_vector.h: In function ‘gemmi::Structure gemmi::impl::make_structure_from_block(const gemmi::cif::Block&)’: 2022-09-21T23:52:19,879 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:19,880 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:52:19,880 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:52:24,351 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:52:24,351 from /usr/include/c++/10/functional:62, 2022-09-21T23:52:24,352 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:52:24,352 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:52:24,352 from include/gemmi/third_party/fast_float.h:1647, 2022-09-21T23:52:24,353 from include/gemmi/numb.hpp:14, 2022-09-21T23:52:24,353 from python/read.cpp:3: 2022-09-21T23:52:24,353 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::SmallStructure::Site; _Alloc = std::allocator]’: 2022-09-21T23:52:24,354 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:52:24,354 171 | vector<_Tp, _Alloc>:: 2022-09-21T23:52:24,355 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:52:27,593 In file included from /usr/include/c++/10/vector:66, 2022-09-21T23:52:27,594 from /usr/include/c++/10/functional:62, 2022-09-21T23:52:27,594 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:52:27,595 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:52:27,595 from include/gemmi/third_party/fast_float.h:1647, 2022-09-21T23:52:27,595 from include/gemmi/numb.hpp:14, 2022-09-21T23:52:27,596 from python/read.cpp:3: 2022-09-21T23:52:27,596 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::ExperimentInfo*; bool _TrivialValueTypes = false]’: 2022-09-21T23:52:27,596 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:27,597 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:52:27,597 | ^~~~~~~~~~~~~ 2022-09-21T23:52:27,597 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:36,975 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:52:36,976 from /usr/include/c++/10/functional:62, 2022-09-21T23:52:36,976 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:52:36,977 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:52:36,977 from include/gemmi/third_party/fast_float.h:1647, 2022-09-21T23:52:36,977 from include/gemmi/numb.hpp:14, 2022-09-21T23:52:36,978 from python/read.cpp:3: 2022-09-21T23:52:36,978 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const char*&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator]’: 2022-09-21T23:52:36,978 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:52:36,978 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:52:36,979 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:52:37,161 /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::pdb_impl::add_restraint_count_weight(gemmi::RefinementInfo&, const char*, const char*)’: 2022-09-21T23:52:37,161 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:37,162 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:52:37,162 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:52:37,326 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&}; _Tp = gemmi::RefinementInfo::Restr; _Alloc = std::allocator]’: 2022-09-21T23:52:37,326 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:52:37,327 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:52:37,327 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:52:37,517 /usr/include/c++/10/bits/vector.tcc: In function ‘T& gemmi::impl::find_or_add(std::vector&, const string&) [with T = gemmi::RefinementInfo::Restr]’: 2022-09-21T23:52:37,518 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:37,518 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:52:37,518 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:52:37,818 /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::pdb_impl::read_remark3_line(const char*, gemmi::Metadata&, std::string*&)’: 2022-09-21T23:52:37,818 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:37,819 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:52:37,819 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:52:37,827 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:37,828 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:52:37,828 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:52:51,127 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:52:51,127 from /usr/include/c++/10/functional:62, 2022-09-21T23:52:51,127 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:52:51,128 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:52:51,128 from include/gemmi/third_party/fast_float.h:1647, 2022-09-21T23:52:51,128 from include/gemmi/numb.hpp:14, 2022-09-21T23:52:51,129 from python/read.cpp:3: 2022-09-21T23:52:51,129 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const T&)>, void, {std::vector >&, const gemmi::SmallStructure::Site&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [35]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:52:51,129 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:51,130 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:52:51,130 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:52:51,255 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, std::vector*, {const std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [44]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:52:51,256 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:51,256 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:52:51,256 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:52:51,777 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, void, {gemmi::SmallStructure&, const gemmi::SmallStructure::Site&}, {pybind11::name, pybind11::is_method, pybind11::sibling}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:52:51,778 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:51,778 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:52:51,778 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:52:52,002 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:52:52,002 from /usr/include/c++/10/functional:62, 2022-09-21T23:52:52,002 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:52:52,003 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:52:52,003 from include/gemmi/third_party/fast_float.h:1647, 2022-09-21T23:52:52,003 from include/gemmi/numb.hpp:14, 2022-09-21T23:52:52,004 from python/read.cpp:3: 2022-09-21T23:52:52,004 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const pybind11::iterable&)>, void, {std::vector >&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:52:52,004 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:52,005 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:52:52,005 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:52:52,006 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:52:52,007 from /usr/include/c++/10/functional:62, 2022-09-21T23:52:52,007 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:52:52,008 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:52:52,008 from include/gemmi/third_party/fast_float.h:1647, 2022-09-21T23:52:52,008 from include/gemmi/numb.hpp:14, 2022-09-21T23:52:52,008 from python/read.cpp:3: 2022-09-21T23:52:52,009 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:52,009 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-21T23:52:52,009 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:52:54,241 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:52:54,242 from /usr/include/c++/10/functional:62, 2022-09-21T23:52:54,242 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:52:54,242 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:52:54,243 from include/gemmi/third_party/fast_float.h:1647, 2022-09-21T23:52:54,243 from include/gemmi/numb.hpp:14, 2022-09-21T23:52:54,243 from python/read.cpp:3: 2022-09-21T23:52:54,244 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::execute, std::unique_ptr >, std::default_delete > > > >, {}>::, void, {pybind11::detail::value_and_holder&, const pybind11::iterable&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::detail::is_new_style_constructor}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:52:54,244 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:54,245 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:52:54,245 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:52:54,655 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:52:54,656 from /usr/include/c++/10/functional:62, 2022-09-21T23:52:54,656 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:52:54,657 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:52:54,657 from include/gemmi/third_party/fast_float.h:1647, 2022-09-21T23:52:54,657 from include/gemmi/numb.hpp:14, 2022-09-21T23:52:54,657 from python/read.cpp:3: 2022-09-21T23:52:54,658 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, pybind11::slice)>, void, {std::vector >&, pybind11::slice}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:52:54,658 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:52:54,658 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:52:54,659 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:02,014 In file included from python/common.h:3, 2022-09-21T23:53:02,015 from python/read.cpp:18: 2022-09-21T23:53:02,015 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In function ‘pybind11::iterator pybind11::detail::make_iterator_impl(Iterator, Sentinel, Extra&& ...) [with Access = pybind11::detail::iterator_access<__gnu_cxx::__normal_iterator >, gemmi::SmallStructure::Site&>; pybind11::return_value_policy Policy = pybind11::return_value_policy::reference_internal; Iterator = __gnu_cxx::__normal_iterator >; Sentinel = __gnu_cxx::__normal_iterator >; ValueType = gemmi::SmallStructure::Site&; Extra = {}]’: 2022-09-21T23:53:02,015 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:02,016 2356 | iterator make_iterator_impl(Iterator first, Sentinel last, Extra &&...extra) { 2022-09-21T23:53:02,016 | ^~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:02,016 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:02,017 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2356:10: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:02,207 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&)>, pybind11::iterator, {std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::keep_alive<0, 1>}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:53:02,208 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:2399:91: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:02,208 2399 | Extra...>(first, last, std::forward(extra)...); 2022-09-21T23:53:02,208 | ^ 2022-09-21T23:53:02,665 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:53:02,665 from /usr/include/c++/10/functional:62, 2022-09-21T23:53:02,666 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:53:02,666 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:53:02,666 from include/gemmi/third_party/fast_float.h:1647, 2022-09-21T23:53:02,667 from include/gemmi/numb.hpp:14, 2022-09-21T23:53:02,667 from python/read.cpp:3: 2022-09-21T23:53:02,667 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, gemmi::SmallStructure::Site, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [42]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:53:02,668 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:02,668 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:53:02,668 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:02,776 In file included from python/read.cpp:20: 2022-09-21T23:53:02,777 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType, const T&)>, void, {std::vector >&, int, const gemmi::SmallStructure::Site&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, pybind11::arg, char [36]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:53:02,777 /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/stl_bind.h:198:21: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 2022-09-21T23:53:02,777 198 | v.insert(v.begin() + i, x); 2022-09-21T23:53:02,778 | ~~~~~~~~^~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:03,359 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:53:03,360 from /usr/include/c++/10/functional:62, 2022-09-21T23:53:03,360 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:53:03,361 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:53:03,361 from include/gemmi/third_party/fast_float.h:1647, 2022-09-21T23:53:03,361 from include/gemmi/numb.hpp:14, 2022-09-21T23:53:03,362 from python/read.cpp:3: 2022-09-21T23:53:03,362 /usr/include/c++/10/bits/stl_vector.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, DiffType)>, void, {std::vector >&, int}, {pybind11::name, pybind11::is_method, pybind11::sibling, char [40]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:53:03,362 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:03,362 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-21T23:53:03,363 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:04,155 In file included from /usr/include/c++/10/vector:66, 2022-09-21T23:53:04,156 from /usr/include/c++/10/functional:62, 2022-09-21T23:53:04,156 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:53:04,156 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:53:04,157 from include/gemmi/third_party/fast_float.h:1647, 2022-09-21T23:53:04,157 from include/gemmi/numb.hpp:14, 2022-09-21T23:53:04,157 from python/read.cpp:3: 2022-09-21T23:53:04,158 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::SmallStructure::Site*; bool _TrivialValueTypes = false]’: 2022-09-21T23:53:04,158 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:04,158 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:53:04,158 | ^~~~~~~~~~~~~ 2022-09-21T23:53:04,159 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:04,311 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize, pybind11::class_, std::unique_ptr >, std::default_delete > > > > >::&, const std::vector&)>, void, {std::vector >&, const std::vector >&}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg, char [61]}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-21T23:53:04,312 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:04,312 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:53:04,312 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:04,313 148 | && __is_trivial(_ValueType2) 2022-09-21T23:53:04,313 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:04,313 149 | && __assignable>:: 2022-09-21T23:53:04,313 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:04,314 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:53:04,314 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:04,649 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Assembly*; bool _TrivialValueTypes = false]’: 2022-09-21T23:53:04,649 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:04,649 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:53:04,650 | ^~~~~~~~~~~~~ 2022-09-21T23:53:04,650 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:04,779 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::TlsGroup*; bool _TrivialValueTypes = false]’: 2022-09-21T23:53:04,780 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:04,780 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:05,019 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::RefinementInfo*; bool _TrivialValueTypes = false]’: 2022-09-21T23:53:05,019 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:05,020 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:05,024 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:05,025 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:53:05,025 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:05,026 148 | && __is_trivial(_ValueType2) 2022-09-21T23:53:05,026 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:05,026 149 | && __assignable>:: 2022-09-21T23:53:05,026 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:05,027 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:53:05,027 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:05,505 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::CrystalInfo*; bool _TrivialValueTypes = false]’: 2022-09-21T23:53:05,505 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:05,505 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:53:05,506 | ^~~~~~~~~~~~~ 2022-09-21T23:53:05,506 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:05,695 /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Metadata::Metadata(const gemmi::Metadata&)’: 2022-09-21T23:53:05,696 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:05,696 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:53:05,697 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:05,697 148 | && __is_trivial(_ValueType2) 2022-09-21T23:53:05,697 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:05,697 149 | && __assignable>:: 2022-09-21T23:53:05,698 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:05,698 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:53:05,698 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:05,700 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:05,700 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:53:05,700 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:05,701 148 | && __is_trivial(_ValueType2) 2022-09-21T23:53:05,701 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:05,701 149 | && __assignable>:: 2022-09-21T23:53:05,702 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:05,702 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:53:05,702 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:05,704 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:05,704 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:53:05,704 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:05,705 148 | && __is_trivial(_ValueType2) 2022-09-21T23:53:05,705 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:05,705 149 | && __assignable>:: 2022-09-21T23:53:05,706 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:05,706 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:53:05,706 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:06,154 /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Structure::Structure(const gemmi::Structure&)’: 2022-09-21T23:53:06,155 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:53:06,155 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:53:06,155 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:06,156 148 | && __is_trivial(_ValueType2) 2022-09-21T23:53:06,156 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:06,156 149 | && __assignable>:: 2022-09-21T23:53:06,157 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:06,157 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:53:06,157 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:53:19,432 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/recgrid.cpp -o build/temp.linux-armv7l-cpython-39/python/recgrid.o -std=c++17 -fvisibility=hidden -g0 2022-09-21T23:54:52,086 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:54:52,087 from /usr/include/c++/10/functional:62, 2022-09-21T23:54:52,088 from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, 2022-09-21T23:54:52,088 from /usr/include/c++/10/algorithm:74, 2022-09-21T23:54:52,088 from include/gemmi/asudata.hpp:9, 2022-09-21T23:54:52,089 from include/gemmi/recgrid.hpp:8, 2022-09-21T23:54:52,089 from python/recgrid.cpp:3: 2022-09-21T23:54:52,089 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2022-09-21T23:54:52,090 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:54:52,090 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:54:52,090 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:54:52,091 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:54:52,272 /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::UnitCell::set_cell_images_from_spacegroup(const gemmi::SpaceGroup*)’: 2022-09-21T23:54:52,272 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:54:52,273 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:54:52,273 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:56:08,731 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/scaling.cpp -o build/temp.linux-armv7l-cpython-39/python/scaling.o -std=c++17 -fvisibility=hidden -g0 2022-09-21T23:56:38,762 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:56:38,762 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:56:38,763 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:56:38,763 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:56:38,763 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:56:38,764 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:56:38,764 from python/common.h:3, 2022-09-21T23:56:38,765 from python/scaling.cpp:3: 2022-09-21T23:56:38,765 /usr/include/c++/10/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const double*; _Tp = double; _Alloc = std::allocator]’: 2022-09-21T23:56:38,765 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:56:38,766 721 | vector<_Tp, _Alloc>:: 2022-09-21T23:56:38,766 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:56:38,766 /usr/include/c++/10/bits/vector.tcc:721:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:56:46,500 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Scaling::Point}; _Tp = gemmi::Scaling::Point; _Alloc = std::allocator::Point>]’: 2022-09-21T23:56:46,500 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::Point, std::allocator::Point> >::iterator’ changed in GCC 7.1 2022-09-21T23:56:46,501 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:56:46,501 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:56:46,674 /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::Scaling::prepare_points(const gemmi::AsuData >&, const gemmi::AsuData >&, const gemmi::AsuData >&) [with Real = float]’: 2022-09-21T23:56:46,674 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::Point*, std::vector::Point, std::allocator::Point> > >’ changed in GCC 7.1 2022-09-21T23:56:46,675 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:56:46,675 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:57:03,346 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2022-09-21T23:57:03,347 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:57:03,347 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:57:03,348 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:57:03,427 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:57:03,427 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:57:03,428 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:57:03,428 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:57:03,428 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:57:03,429 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:57:03,429 from python/common.h:3, 2022-09-21T23:57:03,429 from python/scaling.cpp:3: 2022-09-21T23:57:03,429 /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector gemmi::Scaling::get_parameters() const [with Real = float]’: 2022-09-21T23:57:03,430 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:57:03,430 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:57:03,430 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:57:03,431 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:57:03,431 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:57:03,432 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:57:03,432 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:57:03,432 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:57:03,432 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:57:03,433 /usr/include/c++/10/bits/stl_vector.h:1313:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:57:03,433 1313 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(), 2022-09-21T23:57:03,433 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:57:03,434 1314 | std::random_access_iterator_tag()); 2022-09-21T23:57:03,434 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:57:03,434 /usr/include/c++/10/bits/stl_vector.h:1313:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:57:03,435 1313 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(), 2022-09-21T23:57:03,435 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:57:03,435 1314 | std::random_access_iterator_tag()); 2022-09-21T23:57:03,436 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:57:03,436 /usr/include/c++/10/bits/stl_vector.h:1313:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:57:03,436 1313 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(), 2022-09-21T23:57:03,436 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:57:03,437 1314 | std::random_access_iterator_tag()); 2022-09-21T23:57:03,437 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:57:03,437 /usr/include/c++/10/bits/stl_vector.h:1313:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:57:03,438 1313 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(), 2022-09-21T23:57:03,438 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:57:03,438 1314 | std::random_access_iterator_tag()); 2022-09-21T23:57:03,439 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:57:03,439 /usr/include/c++/10/bits/stl_vector.h:1313:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:57:03,439 1313 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(), 2022-09-21T23:57:03,439 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:57:03,440 1314 | std::random_access_iterator_tag()); 2022-09-21T23:57:03,440 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:57:03,440 /usr/include/c++/10/bits/stl_vector.h:1313:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:57:03,441 1313 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(), 2022-09-21T23:57:03,441 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:57:03,441 1314 | std::random_access_iterator_tag()); 2022-09-21T23:57:03,441 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:57:03,442 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:57:03,442 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:57:03,442 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:57:03,672 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:57:03,672 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-21T23:57:03,673 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-21T23:57:03,673 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-21T23:57:03,673 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-21T23:57:03,674 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-21T23:57:03,674 from python/common.h:3, 2022-09-21T23:57:03,674 from python/scaling.cpp:3: 2022-09-21T23:57:03,675 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2022-09-21T23:57:03,675 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:57:03,675 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:57:03,676 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:57:03,750 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector gemmi::Scaling::compute_values() const [with Real = float]’: 2022-09-21T23:57:03,750 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:57:03,751 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:57:03,751 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:57:06,687 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/search.cpp -o build/temp.linux-armv7l-cpython-39/python/search.o -std=c++17 -fvisibility=hidden -g0 2022-09-21T23:58:19,768 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:58:19,768 from include/gemmi/neighbor.hpp:9, 2022-09-21T23:58:19,769 from python/search.cpp:3: 2022-09-21T23:58:19,769 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::FTransform&}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2022-09-21T23:58:19,769 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:58:19,770 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:58:19,770 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:58:20,212 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Fractional&}; _Tp = gemmi::Fractional; _Alloc = std::allocator]’: 2022-09-21T23:58:20,213 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:58:20,467 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:58:20,467 from include/gemmi/neighbor.hpp:9, 2022-09-21T23:58:20,468 from python/search.cpp:3: 2022-09-21T23:58:20,468 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::NeighborSearch::add_site(const gemmi::SmallStructure::Site&, int)’: 2022-09-21T23:58:20,469 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:58:20,469 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:58:20,469 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:58:28,284 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:58:28,285 from include/gemmi/neighbor.hpp:9, 2022-09-21T23:58:28,285 from python/search.cpp:3: 2022-09-21T23:58:28,285 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2022-09-21T23:58:28,286 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:58:28,286 426 | vector<_Tp, _Alloc>:: 2022-09-21T23:58:28,286 | ^~~~~~~~~~~~~~~~~~~ 2022-09-21T23:58:28,287 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-21T23:58:28,660 In file included from /usr/include/c++/10/vector:67, 2022-09-21T23:58:28,661 from include/gemmi/neighbor.hpp:9, 2022-09-21T23:58:28,661 from python/search.cpp:3: 2022-09-21T23:58:28,661 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void gemmi::NeighborSearch::set_bounding_cell(const gemmi::UnitCell&)’: 2022-09-21T23:58:28,662 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:58:28,662 1198 | _M_realloc_insert(end(), __x); 2022-09-21T23:58:28,662 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-21T23:58:28,664 In file included from /usr/include/c++/10/vector:72, 2022-09-21T23:58:28,665 from include/gemmi/neighbor.hpp:9, 2022-09-21T23:58:28,665 from python/search.cpp:3: 2022-09-21T23:58:28,665 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:58:28,666 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-21T23:58:28,666 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:59:08,233 In file included from /usr/include/c++/10/vector:66, 2022-09-21T23:59:08,234 from include/gemmi/neighbor.hpp:9, 2022-09-21T23:59:08,234 from python/search.cpp:3: 2022-09-21T23:59:08,235 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Restraints::Plane*; bool _TrivialValueTypes = false]’: 2022-09-21T23:59:08,235 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:59:08,235 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-21T23:59:08,236 | ^~~~~~~~~~~~~ 2022-09-21T23:59:08,236 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:59:08,573 /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Restraints::Restraints(const gemmi::Restraints&)’: 2022-09-21T23:59:08,573 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-21T23:59:08,574 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-21T23:59:08,574 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:59:08,575 148 | && __is_trivial(_ValueType2) 2022-09-21T23:59:08,575 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:59:08,575 149 | && __assignable>:: 2022-09-21T23:59:08,576 | ~~~~~~~~~~~~~~~~~~ 2022-09-21T23:59:08,576 150 | __uninit_copy(__first, __last, __result); 2022-09-21T23:59:08,576 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-21T23:59:10,502 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/sf.cpp -o build/temp.linux-armv7l-cpython-39/python/sf.o -std=c++17 -fvisibility=hidden -g0 2022-09-21T23:59:35,039 In file included from include/gemmi/it92.hpp:16, 2022-09-21T23:59:35,040 from python/sf.cpp:6: 2022-09-21T23:59:35,040 include/gemmi/formfact.hpp: In instantiation of ‘std::pair<_ForwardIterator, _ForwardIterator> gemmi::ExpSum::calculate_with_derivative(Real) const [with int N = 5; Real = double]’: 2022-09-21T23:59:35,041 include/gemmi/dencalc.hpp:19:54: required from ‘double gemmi::determine_cutoff_radius(double, const PrecalExpSum&, double) [with PrecalExpSum = gemmi::ExpSum<5, double>]’ 2022-09-21T23:59:35,041 include/gemmi/dencalc.hpp:130:35: required from ‘double gemmi::DensityCalculator::estimate_radius(const gemmi::ExpSum&, double) const [with int N = 5; Table = gemmi::IT92; Real = float; typename Table::Coef::coef_type = double]’ 2022-09-21T23:59:35,041 python/sf.cpp:63:36: required from ‘void add_dencalc(pybind11::module&, const char*) [with Table = gemmi::IT92; pybind11::module = pybind11::module_]’ 2022-09-21T23:59:35,042 python/sf.cpp:86:44: required from here 2022-09-21T23:59:35,042 include/gemmi/formfact.hpp:28:24: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 2022-09-21T23:59:35,042 28 | std::pair calculate_with_derivative(Real r) const { 2022-09-21T23:59:35,043 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:00:34,238 In file included from /usr/include/c++/10/vector:72, 2022-09-22T00:00:34,238 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-22T00:00:34,239 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-22T00:00:34,239 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-22T00:00:34,239 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-22T00:00:34,240 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-22T00:00:34,240 from python/common.h:3, 2022-09-22T00:00:34,240 from python/sf.cpp:3: 2022-09-22T00:00:34,241 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2022-09-22T00:00:34,241 /usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-22T00:00:34,241 509 | vector<_Tp, _Alloc>:: 2022-09-22T00:00:34,242 | ^~~~~~~~~~~~~~~~~~~ 2022-09-22T00:00:34,895 In file included from /usr/include/c++/10/vector:67, 2022-09-22T00:00:34,896 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../detail/common.h:253, 2022-09-22T00:00:34,896 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../cast.h:13, 2022-09-22T00:00:34,897 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/../attr.h:13, 2022-09-22T00:00:34,897 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/detail/class.h:12, 2022-09-22T00:00:34,897 from /home/piwheels/.local/lib/python3.9/site-packages/pybind11/include/pybind11/pybind11.h:13, 2022-09-22T00:00:34,898 from python/common.h:3, 2022-09-22T00:00:34,898 from python/sf.cpp:3: 2022-09-22T00:00:34,898 /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::complex gemmi::StructureFactorCalculator::calculate_sf_from_model(const gemmi::Model&, const Miller&) [with Table = gemmi::Neutron92]’: 2022-09-22T00:00:34,898 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:00:34,899 960 | _M_fill_insert(end(), __new_size - size(), __x); 2022-09-22T00:00:34,899 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:00:35,518 /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::complex gemmi::StructureFactorCalculator
::calculate_sf_from_model(const gemmi::Model&, const Miller&) [with Table = gemmi::C4322]’: 2022-09-22T00:00:35,518 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:00:35,519 960 | _M_fill_insert(end(), __new_size - size(), __x); 2022-09-22T00:00:35,519 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:00:36,159 /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::complex gemmi::StructureFactorCalculator
::calculate_sf_from_model(const gemmi::Model&, const Miller&) [with Table = gemmi::IT92]’: 2022-09-22T00:00:36,159 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:00:36,160 960 | _M_fill_insert(end(), __new_size - size(), __x); 2022-09-22T00:00:36,160 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:00:36,565 /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::complex gemmi::StructureFactorCalculator
::calculate_sf_from_small_structure(const gemmi::SmallStructure&, const Miller&) [with Table = gemmi::Neutron92]’: 2022-09-22T00:00:36,565 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:00:36,566 960 | _M_fill_insert(end(), __new_size - size(), __x); 2022-09-22T00:00:36,566 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:00:36,904 /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::complex gemmi::StructureFactorCalculator
::calculate_sf_from_small_structure(const gemmi::SmallStructure&, const Miller&) [with Table = gemmi::C4322]’: 2022-09-22T00:00:36,905 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:00:36,905 960 | _M_fill_insert(end(), __new_size - size(), __x); 2022-09-22T00:00:36,906 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:00:37,264 /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::complex gemmi::StructureFactorCalculator
::calculate_sf_from_small_structure(const gemmi::SmallStructure&, const Miller&) [with Table = gemmi::IT92]’: 2022-09-22T00:00:37,265 /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:00:37,265 960 | _M_fill_insert(end(), __new_size - size(), __x); 2022-09-22T00:00:37,265 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:00:45,817 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/sym.cpp -o build/temp.linux-armv7l-cpython-39/python/sym.o -std=c++17 -fvisibility=hidden -g0 2022-09-22T00:02:34,038 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/topo.cpp -o build/temp.linux-armv7l-cpython-39/python/topo.o -std=c++17 -fvisibility=hidden -g0 2022-09-22T00:04:01,767 In file included from /usr/include/c++/10/bits/stl_tree.h:63, 2022-09-22T00:04:01,768 from /usr/include/c++/10/map:60, 2022-09-22T00:04:01,768 from include/gemmi/topo.hpp:8, 2022-09-22T00:04:01,769 from python/topo.cpp:3: 2022-09-22T00:04:01,769 /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]’: 2022-09-22T00:04:01,769 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:01,770 1921 | __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, 2022-09-22T00:04:01,770 | ^~~~~~~~~ 2022-09-22T00:04:01,770 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:03,449 In file included from /usr/include/c++/10/algorithm:62, 2022-09-22T00:04:03,450 from include/gemmi/util.hpp:8, 2022-09-22T00:04:03,450 from include/gemmi/cifdoc.hpp:11, 2022-09-22T00:04:03,450 from include/gemmi/chemcomp.hpp:11, 2022-09-22T00:04:03,451 from include/gemmi/topo.hpp:10, 2022-09-22T00:04:03,451 from python/topo.cpp:3: 2022-09-22T00:04:03,451 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter >]’: 2022-09-22T00:04:03,452 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:03,452 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2022-09-22T00:04:03,452 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:05,608 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2022-09-22T00:04:05,609 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:05,609 1839 | __insertion_sort(_RandomAccessIterator __first, 2022-09-22T00:04:05,609 | ^~~~~~~~~~~~~~~~ 2022-09-22T00:04:05,610 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:05,971 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2022-09-22T00:04:05,971 from /usr/include/c++/10/algorithm:62, 2022-09-22T00:04:05,971 from include/gemmi/util.hpp:8, 2022-09-22T00:04:05,972 from include/gemmi/cifdoc.hpp:11, 2022-09-22T00:04:05,972 from include/gemmi/chemcomp.hpp:11, 2022-09-22T00:04:05,972 from include/gemmi/topo.hpp:10, 2022-09-22T00:04:05,973 from python/topo.cpp:3: 2022-09-22T00:04:05,973 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = gemmi::Atom; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2022-09-22T00:04:05,973 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:05,974 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2022-09-22T00:04:05,974 | ^~~~~~~~~~~~~ 2022-09-22T00:04:14,253 In file included from /usr/include/c++/10/vector:72, 2022-09-22T00:04:14,253 from include/gemmi/chemcomp.hpp:10, 2022-09-22T00:04:14,254 from include/gemmi/topo.hpp:10, 2022-09-22T00:04:14,254 from python/topo.cpp:3: 2022-09-22T00:04:14,255 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2022-09-22T00:04:14,255 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-22T00:04:14,255 171 | vector<_Tp, _Alloc>:: 2022-09-22T00:04:14,256 | ^~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:14,478 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Angle&}; _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator]’: 2022-09-22T00:04:14,479 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-22T00:04:14,479 426 | vector<_Tp, _Alloc>:: 2022-09-22T00:04:14,479 | ^~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:14,791 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator]’: 2022-09-22T00:04:14,792 /usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-22T00:04:14,792 171 | vector<_Tp, _Alloc>:: 2022-09-22T00:04:14,792 | ^~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:16,887 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Atom&}; _Tp = gemmi::Atom; _Alloc = std::allocator]’: 2022-09-22T00:04:16,887 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-22T00:04:16,888 426 | vector<_Tp, _Alloc>:: 2022-09-22T00:04:16,888 | ^~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:17,137 In file included from /usr/include/c++/10/vector:67, 2022-09-22T00:04:17,137 from include/gemmi/chemcomp.hpp:10, 2022-09-22T00:04:17,138 from include/gemmi/topo.hpp:10, 2022-09-22T00:04:17,138 from python/topo.cpp:3: 2022-09-22T00:04:17,138 /usr/include/c++/10/bits/stl_vector.h: In function ‘void gemmi::add_hydrogens_without_positions(const gemmi::ChemComp&, gemmi::Residue&)’: 2022-09-22T00:04:17,139 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:17,139 1198 | _M_realloc_insert(end(), __x); 2022-09-22T00:04:17,139 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-22T00:04:31,068 In file included from /usr/include/c++/10/vector:72, 2022-09-22T00:04:31,068 from include/gemmi/chemcomp.hpp:10, 2022-09-22T00:04:31,069 from include/gemmi/topo.hpp:10, 2022-09-22T00:04:31,069 from python/topo.cpp:3: 2022-09-22T00:04:31,069 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Plane}; _Tp = gemmi::Restraints::Plane; _Alloc = std::allocator]’: 2022-09-22T00:04:31,070 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-22T00:04:31,070 426 | vector<_Tp, _Alloc>:: 2022-09-22T00:04:31,070 | ^~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:31,071 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-22T00:04:31,251 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2022-09-22T00:04:31,252 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-22T00:04:31,252 184 | vector<_Tp, _Alloc>:: 2022-09-22T00:04:31,252 | ^~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:31,253 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-22T00:04:31,429 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = gemmi::Restraints::Angle; _Alloc = std::allocator]’: 2022-09-22T00:04:31,429 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-22T00:04:31,429 /usr/include/c++/10/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-22T00:04:31,817 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Restraints::Bond}; _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2022-09-22T00:04:31,817 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-22T00:04:31,818 426 | vector<_Tp, _Alloc>:: 2022-09-22T00:04:31,818 | ^~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:32,199 In file included from /usr/include/c++/10/algorithm:62, 2022-09-22T00:04:32,199 from include/gemmi/util.hpp:8, 2022-09-22T00:04:32,200 from include/gemmi/cifdoc.hpp:11, 2022-09-22T00:04:32,200 from include/gemmi/chemcomp.hpp:11, 2022-09-22T00:04:32,200 from include/gemmi/topo.hpp:10, 2022-09-22T00:04:32,201 from python/topo.cpp:3: 2022-09-22T00:04:32,201 /usr/include/c++/10/bits/stl_algo.h: In function ‘_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]’: 2022-09-22T00:04:32,201 /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:32,202 833 | __remove_if(_ForwardIterator __first, _ForwardIterator __last, 2022-09-22T00:04:32,202 | ^~~~~~~~~~~ 2022-09-22T00:04:32,202 /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:32,422 /usr/include/c++/10/bits/stl_algo.h: In function ‘_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]’: 2022-09-22T00:04:32,423 /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:32,423 /usr/include/c++/10/bits/stl_algo.h:833:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:33,064 In file included from /usr/include/c++/10/vector:72, 2022-09-22T00:04:33,064 from include/gemmi/chemcomp.hpp:10, 2022-09-22T00:04:33,065 from include/gemmi/topo.hpp:10, 2022-09-22T00:04:33,065 from python/topo.cpp:3: 2022-09-22T00:04:33,065 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Torsion&}; _Tp = gemmi::Restraints::Torsion; _Alloc = std::allocator]’: 2022-09-22T00:04:33,065 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-22T00:04:33,066 426 | vector<_Tp, _Alloc>:: 2022-09-22T00:04:33,066 | ^~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:35,483 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::place_hydrogens(const gemmi::Topo&, const gemmi::Atom&)::BondedAtom}; _Tp = gemmi::place_hydrogens(const gemmi::Topo&, const gemmi::Atom&)::BondedAtom; _Alloc = std::allocator]’: 2022-09-22T00:04:35,483 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-22T00:04:35,847 /usr/include/c++/10/bits/vector.tcc: In function ‘void gemmi::place_hydrogens(const gemmi::Topo&, const gemmi::Atom&)’: 2022-09-22T00:04:35,848 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:35,848 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-22T00:04:35,849 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:38,254 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gemmi::Restraints::Bond&}; _Tp = gemmi::Restraints::Bond; _Alloc = std::allocator]’: 2022-09-22T00:04:38,255 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-22T00:04:38,255 426 | vector<_Tp, _Alloc>:: 2022-09-22T00:04:38,255 | ^~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:39,541 In file included from /usr/include/c++/10/algorithm:62, 2022-09-22T00:04:39,542 from include/gemmi/util.hpp:8, 2022-09-22T00:04:39,542 from include/gemmi/cifdoc.hpp:11, 2022-09-22T00:04:39,542 from include/gemmi/chemcomp.hpp:11, 2022-09-22T00:04:39,543 from include/gemmi/topo.hpp:10, 2022-09-22T00:04:39,543 from python/topo.cpp:3: 2022-09-22T00:04:39,543 /usr/include/c++/10/bits/stl_algo.h: In member function ‘void gemmi::ChemMod::apply_to(gemmi::ChemComp&) const’: 2022-09-22T00:04:39,544 /usr/include/c++/10/bits/stl_algo.h:914:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:39,544 914 | return std::__remove_if(__first, __last, 2022-09-22T00:04:39,545 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2022-09-22T00:04:39,545 915 | __gnu_cxx::__ops::__pred_iter(__pred)); 2022-09-22T00:04:39,545 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:39,546 In file included from /usr/include/c++/10/vector:67, 2022-09-22T00:04:39,546 from include/gemmi/chemcomp.hpp:10, 2022-09-22T00:04:39,546 from include/gemmi/topo.hpp:10, 2022-09-22T00:04:39,547 from python/topo.cpp:3: 2022-09-22T00:04:39,547 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:39,547 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-22T00:04:39,548 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:39,548 In file included from /usr/include/c++/10/algorithm:62, 2022-09-22T00:04:39,548 from include/gemmi/util.hpp:8, 2022-09-22T00:04:39,549 from include/gemmi/cifdoc.hpp:11, 2022-09-22T00:04:39,549 from include/gemmi/chemcomp.hpp:11, 2022-09-22T00:04:39,549 from include/gemmi/topo.hpp:10, 2022-09-22T00:04:39,549 from python/topo.cpp:3: 2022-09-22T00:04:39,550 /usr/include/c++/10/bits/stl_algo.h:914:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:39,550 914 | return std::__remove_if(__first, __last, 2022-09-22T00:04:39,550 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2022-09-22T00:04:39,551 915 | __gnu_cxx::__ops::__pred_iter(__pred)); 2022-09-22T00:04:39,551 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:39,551 In file included from /usr/include/c++/10/vector:67, 2022-09-22T00:04:39,552 from include/gemmi/chemcomp.hpp:10, 2022-09-22T00:04:39,552 from include/gemmi/topo.hpp:10, 2022-09-22T00:04:39,552 from python/topo.cpp:3: 2022-09-22T00:04:39,553 /usr/include/c++/10/bits/stl_vector.h:1461:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:39,553 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2022-09-22T00:04:39,553 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:39,557 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:39,557 1198 | _M_realloc_insert(end(), __x); 2022-09-22T00:04:39,557 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-22T00:04:39,558 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:39,558 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-22T00:04:39,559 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:39,563 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:39,563 1198 | _M_realloc_insert(end(), __x); 2022-09-22T00:04:39,563 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-22T00:04:39,567 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:39,567 1198 | _M_realloc_insert(end(), __x); 2022-09-22T00:04:39,568 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2022-09-22T00:04:39,568 /usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:39,568 1431 | { return _M_erase(begin() + (__position - cbegin())); } 2022-09-22T00:04:39,569 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:39,572 In file included from /usr/include/c++/10/bits/stl_tree.h:63, 2022-09-22T00:04:39,572 from /usr/include/c++/10/map:60, 2022-09-22T00:04:39,572 from include/gemmi/topo.hpp:8, 2022-09-22T00:04:39,573 from python/topo.cpp:3: 2022-09-22T00:04:39,573 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:39,573 1974 | return __find_if(__first, __last, __pred, 2022-09-22T00:04:39,574 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:39,574 1975 | std::__iterator_category(__first)); 2022-09-22T00:04:39,574 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:39,575 In file included from /usr/include/c++/10/vector:72, 2022-09-22T00:04:39,575 from include/gemmi/chemcomp.hpp:10, 2022-09-22T00:04:39,575 from include/gemmi/topo.hpp:10, 2022-09-22T00:04:39,576 from python/topo.cpp:3: 2022-09-22T00:04:39,576 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:39,577 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-22T00:04:39,577 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:39,577 In file included from /usr/include/c++/10/bits/stl_tree.h:63, 2022-09-22T00:04:39,578 from /usr/include/c++/10/map:60, 2022-09-22T00:04:39,578 from include/gemmi/topo.hpp:8, 2022-09-22T00:04:39,578 from python/topo.cpp:3: 2022-09-22T00:04:39,579 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:04:39,579 1974 | return __find_if(__first, __last, __pred, 2022-09-22T00:04:39,579 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:04:39,580 1975 | std::__iterator_category(__first)); 2022-09-22T00:04:39,580 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:05:09,209 In file included from /usr/include/c++/10/vector:66, 2022-09-22T00:05:09,209 from include/gemmi/chemcomp.hpp:10, 2022-09-22T00:05:09,210 from include/gemmi/topo.hpp:10, 2022-09-22T00:05:09,210 from python/topo.cpp:3: 2022-09-22T00:05:09,210 /usr/include/c++/10/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = gemmi::Restraints::Plane*; bool _TrivialValueTypes = false]’: 2022-09-22T00:05:09,211 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:05:09,211 84 | __uninit_copy(_InputIterator __first, _InputIterator __last, 2022-09-22T00:05:09,211 | ^~~~~~~~~~~~~ 2022-09-22T00:05:09,212 /usr/include/c++/10/bits/stl_uninitialized.h:84:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:05:09,418 In file included from /usr/include/c++/10/algorithm:62, 2022-09-22T00:05:09,419 from include/gemmi/util.hpp:8, 2022-09-22T00:05:09,419 from include/gemmi/cifdoc.hpp:11, 2022-09-22T00:05:09,420 from include/gemmi/chemcomp.hpp:11, 2022-09-22T00:05:09,420 from include/gemmi/topo.hpp:10, 2022-09-22T00:05:09,420 from python/topo.cpp:3: 2022-09-22T00:05:09,420 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2022-09-22T00:05:09,421 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:05:09,421 1662 | __heap_select(_RandomAccessIterator __first, 2022-09-22T00:05:09,421 | ^~~~~~~~~~~~~ 2022-09-22T00:05:09,422 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:05:09,423 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:05:43,855 In file included from /usr/include/c++/10/vector:66, 2022-09-22T00:05:43,856 from include/gemmi/chemcomp.hpp:10, 2022-09-22T00:05:43,856 from include/gemmi/topo.hpp:10, 2022-09-22T00:05:43,856 from python/topo.cpp:3: 2022-09-22T00:05:43,856 /usr/include/c++/10/bits/stl_uninitialized.h: In copy constructor ‘gemmi::Restraints::Restraints(const gemmi::Restraints&)’: 2022-09-22T00:05:43,857 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:05:43,857 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-22T00:05:43,857 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:05:43,858 148 | && __is_trivial(_ValueType2) 2022-09-22T00:05:43,858 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:05:43,858 149 | && __assignable>:: 2022-09-22T00:05:43,859 | ~~~~~~~~~~~~~~~~~~ 2022-09-22T00:05:43,859 150 | __uninit_copy(__first, __last, __result); 2022-09-22T00:05:43,859 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:05:44,491 In file included from /usr/include/c++/10/vector:72, 2022-09-22T00:05:44,491 from include/gemmi/chemcomp.hpp:10, 2022-09-22T00:05:44,491 from include/gemmi/topo.hpp:10, 2022-09-22T00:05:44,492 from python/topo.cpp:3: 2022-09-22T00:05:44,492 /usr/include/c++/10/bits/vector.tcc: In member function ‘void gemmi::Topo::setup_connection(gemmi::Connection&, gemmi::Model&, gemmi::MonLib&, bool)’: 2022-09-22T00:05:44,492 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:05:44,493 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-22T00:05:44,493 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:05:46,385 In file included from /usr/include/c++/10/vector:66, 2022-09-22T00:05:46,386 from include/gemmi/chemcomp.hpp:10, 2022-09-22T00:05:46,386 from include/gemmi/topo.hpp:10, 2022-09-22T00:05:46,386 from python/topo.cpp:3: 2022-09-22T00:05:46,387 /usr/include/c++/10/bits/stl_uninitialized.h: In member function ‘void gemmi::Topo::initialize_refmac_topology(gemmi::Structure&, gemmi::Model&, gemmi::MonLib&, bool)’: 2022-09-22T00:05:46,387 /usr/include/c++/10/bits/stl_uninitialized.h:150:15: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:05:46,387 147 | return std::__uninitialized_copy<__is_trivial(_ValueType1) 2022-09-22T00:05:46,388 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:05:46,388 148 | && __is_trivial(_ValueType2) 2022-09-22T00:05:46,388 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:05:46,388 149 | && __assignable>:: 2022-09-22T00:05:46,389 | ~~~~~~~~~~~~~~~~~~ 2022-09-22T00:05:46,389 150 | __uninit_copy(__first, __last, __result); 2022-09-22T00:05:46,389 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:05:48,570 In file included from /usr/include/c++/10/algorithm:62, 2022-09-22T00:05:48,571 from include/gemmi/util.hpp:8, 2022-09-22T00:05:48,571 from include/gemmi/cifdoc.hpp:11, 2022-09-22T00:05:48,571 from include/gemmi/chemcomp.hpp:11, 2022-09-22T00:05:48,572 from include/gemmi/topo.hpp:10, 2022-09-22T00:05:48,572 from python/topo.cpp:3: 2022-09-22T00:05:48,572 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2022-09-22T00:05:48,572 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:05:48,573 1945 | __introsort_loop(_RandomAccessIterator __first, 2022-09-22T00:05:48,573 | ^~~~~~~~~~~~~~~~ 2022-09-22T00:05:48,574 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:05:48,578 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:05:48,579 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2022-09-22T00:05:48,579 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:05:48,583 /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:05:48,583 1937 | std::__heap_select(__first, __middle, __last, __comp); 2022-09-22T00:05:48,584 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:05:49,224 /usr/include/c++/10/bits/stl_algo.h: In function ‘std::unique_ptr gemmi::prepare_topology(gemmi::Structure&, gemmi::MonLib&, size_t, gemmi::HydrogenChange, bool, std::ostream*, bool)’: 2022-09-22T00:05:49,224 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:05:49,225 1974 | std::__introsort_loop(__first, __last, 2022-09-22T00:05:49,225 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2022-09-22T00:05:49,225 1975 | std::__lg(__last - __first) * 2, 2022-09-22T00:05:49,225 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:05:49,226 1976 | __comp); 2022-09-22T00:05:49,226 | ~~~~~~~ 2022-09-22T00:05:49,227 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:05:49,227 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2022-09-22T00:05:49,227 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:05:49,228 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:05:49,228 1891 | std::__insertion_sort(__first, __last, __comp); 2022-09-22T00:05:49,228 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:05:52,241 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/unitcell.cpp -o build/temp.linux-armv7l-cpython-39/python/unitcell.o -std=c++17 -fvisibility=hidden -g0 2022-09-22T00:06:58,980 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2022-09-22T00:06:58,981 from /usr/include/c++/10/algorithm:62, 2022-09-22T00:06:58,981 from include/gemmi/math.hpp:10, 2022-09-22T00:06:58,981 from include/gemmi/unitcell.hpp:11, 2022-09-22T00:06:58,981 from python/unitcell.cpp:3: 2022-09-22T00:06:58,982 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2022-09-22T00:06:58,982 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2022-09-22T00:06:58,982 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2022-09-22T00:06:58,983 | ^~~~~~~~~~~~~ 2022-09-22T00:06:59,331 In file included from /usr/include/c++/10/algorithm:62, 2022-09-22T00:06:59,332 from include/gemmi/math.hpp:10, 2022-09-22T00:06:59,332 from include/gemmi/unitcell.hpp:11, 2022-09-22T00:06:59,332 from python/unitcell.cpp:3: 2022-09-22T00:06:59,332 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter >]’: 2022-09-22T00:06:59,333 /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2022-09-22T00:06:59,333 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, 2022-09-22T00:06:59,333 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:06:59,398 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2022-09-22T00:06:59,399 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2022-09-22T00:06:59,399 1839 | __insertion_sort(_RandomAccessIterator __first, 2022-09-22T00:06:59,399 | ^~~~~~~~~~~~~~~~ 2022-09-22T00:06:59,400 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2022-09-22T00:07:10,704 In file included from /usr/include/c++/10/vector:72, 2022-09-22T00:07:10,705 from include/gemmi/unitcell.hpp:10, 2022-09-22T00:07:10,705 from python/unitcell.cpp:3: 2022-09-22T00:07:10,706 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::Op&, double}; _Tp = std::pair; _Alloc = std::allocator >]’: 2022-09-22T00:07:10,706 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2022-09-22T00:07:10,706 426 | vector<_Tp, _Alloc>:: 2022-09-22T00:07:10,707 | ^~~~~~~~~~~~~~~~~~~ 2022-09-22T00:07:18,120 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gemmi::FTransform}; _Tp = gemmi::FTransform; _Alloc = std::allocator]’: 2022-09-22T00:07:18,121 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2022-09-22T00:07:18,316 /usr/include/c++/10/bits/vector.tcc: In member function ‘gemmi::UnitCell gemmi::UnitCell::changed_basis_backward(const gemmi::Op&, bool)’: 2022-09-22T00:07:18,317 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:07:18,317 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-22T00:07:18,317 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:07:20,182 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2022-09-22T00:07:20,183 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2022-09-22T00:07:20,183 426 | vector<_Tp, _Alloc>:: 2022-09-22T00:07:20,183 | ^~~~~~~~~~~~~~~~~~~ 2022-09-22T00:07:21,215 In file included from /usr/include/c++/10/algorithm:62, 2022-09-22T00:07:21,215 from include/gemmi/math.hpp:10, 2022-09-22T00:07:21,216 from include/gemmi/unitcell.hpp:11, 2022-09-22T00:07:21,216 from python/unitcell.cpp:3: 2022-09-22T00:07:21,216 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2022-09-22T00:07:21,217 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2022-09-22T00:07:21,217 1662 | __heap_select(_RandomAccessIterator __first, 2022-09-22T00:07:21,217 | ^~~~~~~~~~~~~ 2022-09-22T00:07:21,218 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2022-09-22T00:07:21,219 /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2022-09-22T00:07:21,351 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: 2022-09-22T00:07:21,352 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2022-09-22T00:07:21,352 1945 | __introsort_loop(_RandomAccessIterator __first, 2022-09-22T00:07:21,352 | ^~~~~~~~~~~~~~~~ 2022-09-22T00:07:21,353 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2022-09-22T00:07:21,354 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2022-09-22T00:07:21,358 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2022-09-22T00:07:21,358 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2022-09-22T00:07:21,359 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:07:21,360 /usr/include/c++/10/bits/stl_algo.h:1937:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2022-09-22T00:07:21,360 1937 | std::__heap_select(__first, __middle, __last, __comp); 2022-09-22T00:07:21,361 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:07:21,710 In file included from /usr/include/c++/10/vector:72, 2022-09-22T00:07:21,710 from include/gemmi/unitcell.hpp:10, 2022-09-22T00:07:21,711 from python/unitcell.cpp:3: 2022-09-22T00:07:21,711 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector > gemmi::find_lattice_2fold_ops(const gemmi::UnitCell&, double)’: 2022-09-22T00:07:21,711 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2022-09-22T00:07:21,712 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-22T00:07:21,712 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:07:21,713 In file included from /usr/include/c++/10/algorithm:62, 2022-09-22T00:07:21,713 from include/gemmi/math.hpp:10, 2022-09-22T00:07:21,714 from include/gemmi/unitcell.hpp:11, 2022-09-22T00:07:21,714 from python/unitcell.cpp:3: 2022-09-22T00:07:21,715 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2022-09-22T00:07:21,715 1974 | std::__introsort_loop(__first, __last, 2022-09-22T00:07:21,715 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2022-09-22T00:07:21,716 1975 | std::__lg(__last - __first) * 2, 2022-09-22T00:07:21,716 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:07:21,716 1976 | __comp); 2022-09-22T00:07:21,717 | ~~~~~~~ 2022-09-22T00:07:21,717 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2022-09-22T00:07:21,717 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2022-09-22T00:07:21,718 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:07:21,718 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2022-09-22T00:07:21,718 1891 | std::__insertion_sort(__first, __last, __comp); 2022-09-22T00:07:21,718 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:08:13,757 In file included from /usr/include/c++/10/vector:72, 2022-09-22T00:08:13,757 from include/gemmi/unitcell.hpp:10, 2022-09-22T00:08:13,758 from python/unitcell.cpp:3: 2022-09-22T00:08:13,758 /usr/include/c++/10/bits/vector.tcc: In static member function ‘static pybind11::handle pybind11::cpp_function::initialize::)>, pybind11::array_t, {const gemmi::SMat33&, pybind11::array_t}, {pybind11::name, pybind11::is_method, pybind11::sibling, pybind11::arg}>::::_FUN(pybind11::detail::function_call&)’: 2022-09-22T00:08:13,758 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2022-09-22T00:08:13,759 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2022-09-22T00:08:13,759 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:08:17,140 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=\"0.5.7\" -Ithird_party/zlib -Iinclude -Ithird_party -I/home/piwheels/.local/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c python/write.cpp -o build/temp.linux-armv7l-cpython-39/python/write.o -std=c++17 -fvisibility=hidden -g0 2022-09-22T00:09:05,337 In file included from /usr/include/c++/10/bits/char_traits.h:39, 2022-09-22T00:09:05,337 from /usr/include/c++/10/string:40, 2022-09-22T00:09:05,338 from include/gemmi/sprintf.hpp:32, 2022-09-22T00:09:05,338 from python/write.cpp:4: 2022-09-22T00:09:05,338 /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]’: 2022-09-22T00:09:05,339 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:09:05,339 1921 | __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, 2022-09-22T00:09:05,339 | ^~~~~~~~~ 2022-09-22T00:09:05,340 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:09:05,409 /usr/include/c++/10/bits/stl_algobase.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred >]’: 2022-09-22T00:09:05,410 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:09:05,410 /usr/include/c++/10/bits/stl_algobase.h:1921:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:09:48,614 /usr/include/c++/10/bits/stl_algobase.h: In function ‘void gemmi::update_mmcif_block(const gemmi::Structure&, gemmi::cif::Block&, gemmi::MmcifOutputGroups)’: 2022-09-22T00:09:48,615 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:09:48,615 1974 | return __find_if(__first, __last, __pred, 2022-09-22T00:09:48,615 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,616 1975 | std::__iterator_category(__first)); 2022-09-22T00:09:48,616 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,617 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:09:48,618 1974 | return __find_if(__first, __last, __pred, 2022-09-22T00:09:48,618 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,618 1975 | std::__iterator_category(__first)); 2022-09-22T00:09:48,619 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,620 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:09:48,620 1974 | return __find_if(__first, __last, __pred, 2022-09-22T00:09:48,621 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,621 1975 | std::__iterator_category(__first)); 2022-09-22T00:09:48,621 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,622 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:09:48,623 1974 | return __find_if(__first, __last, __pred, 2022-09-22T00:09:48,623 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,623 1975 | std::__iterator_category(__first)); 2022-09-22T00:09:48,624 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,625 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:09:48,625 1974 | return __find_if(__first, __last, __pred, 2022-09-22T00:09:48,626 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,626 1975 | std::__iterator_category(__first)); 2022-09-22T00:09:48,626 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,627 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:09:48,627 1974 | return __find_if(__first, __last, __pred, 2022-09-22T00:09:48,628 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,628 1975 | std::__iterator_category(__first)); 2022-09-22T00:09:48,628 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,629 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:09:48,629 1974 | return __find_if(__first, __last, __pred, 2022-09-22T00:09:48,629 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,630 1975 | std::__iterator_category(__first)); 2022-09-22T00:09:48,630 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,630 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:09:48,631 1974 | return __find_if(__first, __last, __pred, 2022-09-22T00:09:48,631 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,631 1975 | std::__iterator_category(__first)); 2022-09-22T00:09:48,632 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,632 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:09:48,632 1974 | return __find_if(__first, __last, __pred, 2022-09-22T00:09:48,633 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,633 1975 | std::__iterator_category(__first)); 2022-09-22T00:09:48,633 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,634 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:09:48,634 1974 | return __find_if(__first, __last, __pred, 2022-09-22T00:09:48,635 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,635 1975 | std::__iterator_category(__first)); 2022-09-22T00:09:48,635 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,635 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:09:48,636 1974 | return __find_if(__first, __last, __pred, 2022-09-22T00:09:48,636 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,636 1975 | std::__iterator_category(__first)); 2022-09-22T00:09:48,637 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,637 /usr/include/c++/10/bits/stl_algobase.h:1974:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2022-09-22T00:09:48,637 1974 | return __find_if(__first, __last, __pred, 2022-09-22T00:09:48,638 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:09:48,638 1975 | std::__iterator_category(__first)); 2022-09-22T00:09:48,638 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-09-22T00:10:30,259 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/python/align.o build/temp.linux-armv7l-cpython-39/python/ccp4.o build/temp.linux-armv7l-cpython-39/python/chemcomp.o build/temp.linux-armv7l-cpython-39/python/cif.o build/temp.linux-armv7l-cpython-39/python/custom.o build/temp.linux-armv7l-cpython-39/python/elem.o build/temp.linux-armv7l-cpython-39/python/gemmi.o build/temp.linux-armv7l-cpython-39/python/grid.o build/temp.linux-armv7l-cpython-39/python/hkl.o build/temp.linux-armv7l-cpython-39/python/meta.o build/temp.linux-armv7l-cpython-39/python/mol.o build/temp.linux-armv7l-cpython-39/python/monlib.o build/temp.linux-armv7l-cpython-39/python/mtz.o build/temp.linux-armv7l-cpython-39/python/read.o build/temp.linux-armv7l-cpython-39/python/recgrid.o build/temp.linux-armv7l-cpython-39/python/scaling.o build/temp.linux-armv7l-cpython-39/python/search.o build/temp.linux-armv7l-cpython-39/python/sf.o build/temp.linux-armv7l-cpython-39/python/sym.o build/temp.linux-armv7l-cpython-39/python/topo.o build/temp.linux-armv7l-cpython-39/python/unitcell.o build/temp.linux-armv7l-cpython-39/python/write.o -L/usr/lib -Lbuild/temp.linux-armv7l-cpython-39 -lgemmi_zlib -lgemmi_zlib -o build/lib.linux-armv7l-cpython-39/gemmi.cpython-39-arm-linux-gnueabihf.so -Wl,-s 2022-09-22T00:10:41,788 /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-09-22T00:10:41,789 warnings.warn( 2022-09-22T00:10:42,453 installing to build/bdist.linux-armv7l/wheel 2022-09-22T00:10:42,453 running install 2022-09-22T00:10:42,516 running install_lib 2022-09-22T00:10:43,171 creating build/bdist.linux-armv7l 2022-09-22T00:10:43,220 creating build/bdist.linux-armv7l/wheel 2022-09-22T00:10:43,222 copying build/lib.linux-armv7l-cpython-39/gemmi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2022-09-22T00:10:43,549 creating build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,551 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/ccd_gi.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,555 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/multiproc.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,558 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/col_order.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,561 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/rama_gather.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,564 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/sub_ccd.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,568 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/cif_i_sigi.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,571 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/map2mtz.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,574 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/weight.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,578 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/aafreq.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,581 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/rama_plot.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,584 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/__main__.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,588 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/simple_search.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,591 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/maskcheck.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,594 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/matthews.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,598 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/maskdiff.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,601 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/hello.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,604 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/from_json.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,608 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/mtz_i_sigi.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,611 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/monomers.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,615 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/patterson_slice.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,618 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/__init__.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,621 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/merge_mtz_mmcif.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,624 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/long_geom.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,628 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/ccd_subgraph.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,631 copying build/lib.linux-armv7l-cpython-39/gemmi-examples/mtrix_iso.py -> build/bdist.linux-armv7l/wheel/gemmi-examples 2022-09-22T00:10:43,634 running install_egg_info 2022-09-22T00:10:44,991 running egg_info 2022-09-22T00:10:45,643 writing gemmi.egg-info/PKG-INFO 2022-09-22T00:10:46,241 writing dependency_links to gemmi.egg-info/dependency_links.txt 2022-09-22T00:10:49,709 writing top-level names to gemmi.egg-info/top_level.txt 2022-09-22T00:10:49,825 reading manifest file 'gemmi.egg-info/SOURCES.txt' 2022-09-22T00:10:49,916 reading manifest template 'MANIFEST.in' 2022-09-22T00:10:50,128 adding license file 'LICENSE.txt' 2022-09-22T00:10:50,176 writing manifest file 'gemmi.egg-info/SOURCES.txt' 2022-09-22T00:10:50,180 Copying gemmi.egg-info to build/bdist.linux-armv7l/wheel/gemmi-0.5.7-py3.9.egg-info 2022-09-22T00:10:50,201 running install_scripts 2022-09-22T00:10:50,349 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2022-09-22T00:10:50,360 creating build/bdist.linux-armv7l/wheel/gemmi-0.5.7.dist-info/WHEEL 2022-09-22T00:10:50,364 creating '/tmp/pip-wheel-qsebwo7i/gemmi-0.5.7-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-09-22T00:10:53,326 adding 'gemmi.cpython-39-arm-linux-gnueabihf.so' 2022-09-22T00:10:53,462 adding 'gemmi-examples/__init__.py' 2022-09-22T00:10:53,465 adding 'gemmi-examples/__main__.py' 2022-09-22T00:10:53,467 adding 'gemmi-examples/aafreq.py' 2022-09-22T00:10:53,470 adding 'gemmi-examples/ccd_gi.py' 2022-09-22T00:10:53,472 adding 'gemmi-examples/ccd_subgraph.py' 2022-09-22T00:10:53,475 adding 'gemmi-examples/cif_i_sigi.py' 2022-09-22T00:10:53,477 adding 'gemmi-examples/col_order.py' 2022-09-22T00:10:53,479 adding 'gemmi-examples/from_json.py' 2022-09-22T00:10:53,481 adding 'gemmi-examples/hello.py' 2022-09-22T00:10:53,484 adding 'gemmi-examples/long_geom.py' 2022-09-22T00:10:53,486 adding 'gemmi-examples/map2mtz.py' 2022-09-22T00:10:53,489 adding 'gemmi-examples/maskcheck.py' 2022-09-22T00:10:53,491 adding 'gemmi-examples/maskdiff.py' 2022-09-22T00:10:53,495 adding 'gemmi-examples/matthews.py' 2022-09-22T00:10:53,497 adding 'gemmi-examples/merge_mtz_mmcif.py' 2022-09-22T00:10:53,500 adding 'gemmi-examples/monomers.py' 2022-09-22T00:10:53,503 adding 'gemmi-examples/mtrix_iso.py' 2022-09-22T00:10:53,505 adding 'gemmi-examples/mtz_i_sigi.py' 2022-09-22T00:10:53,508 adding 'gemmi-examples/multiproc.py' 2022-09-22T00:10:53,510 adding 'gemmi-examples/patterson_slice.py' 2022-09-22T00:10:53,512 adding 'gemmi-examples/rama_gather.py' 2022-09-22T00:10:53,515 adding 'gemmi-examples/rama_plot.py' 2022-09-22T00:10:53,517 adding 'gemmi-examples/simple_search.py' 2022-09-22T00:10:53,520 adding 'gemmi-examples/sub_ccd.py' 2022-09-22T00:10:53,523 adding 'gemmi-examples/weight.py' 2022-09-22T00:10:53,529 adding 'gemmi-0.5.7.dist-info/LICENSE.txt' 2022-09-22T00:10:53,531 adding 'gemmi-0.5.7.dist-info/METADATA' 2022-09-22T00:10:53,533 adding 'gemmi-0.5.7.dist-info/WHEEL' 2022-09-22T00:10:53,535 adding 'gemmi-0.5.7.dist-info/top_level.txt' 2022-09-22T00:10:53,537 adding 'gemmi-0.5.7.dist-info/RECORD' 2022-09-22T00:10:53,639 removing build/bdist.linux-armv7l/wheel 2022-09-22T00:10:53,931 Building wheel for gemmi (setup.py): finished with status 'done' 2022-09-22T00:10:54,017 Created wheel for gemmi: filename=gemmi-0.5.7-cp39-cp39-linux_armv7l.whl size=2570911 sha256=217829361aa2e8d0bbf811ca3783233775b4d906e85ef7d483a15fabc73919ee 2022-09-22T00:10:54,019 Stored in directory: /tmp/pip-ephem-wheel-cache-hd9lc3bv/wheels/70/27/03/758d3100456fe9049ebf19e1916dd22f1daa6c277763d31f20 2022-09-22T00:10:54,047 Successfully built gemmi 2022-09-22T00:10:54,224 Removed build tracker: '/tmp/pip-build-tracker-3lih6cr2'