2022-09-25T02:02:22,356 Created temporary directory: /tmp/pip-ephem-wheel-cache-sgw0eo6i 2022-09-25T02:02:22,362 Created temporary directory: /tmp/pip-build-tracker-f6k9fb15 2022-09-25T02:02:22,362 Initialized build tracking at /tmp/pip-build-tracker-f6k9fb15 2022-09-25T02:02:22,363 Created build tracker: /tmp/pip-build-tracker-f6k9fb15 2022-09-25T02:02:22,363 Entered build tracker: /tmp/pip-build-tracker-f6k9fb15 2022-09-25T02:02:22,364 Created temporary directory: /tmp/pip-wheel-ajbejqx2 2022-09-25T02:02:22,429 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-09-25T02:02:22,437 2 location(s) to search for versions of celltk2: 2022-09-25T02:02:22,437 * https://pypi.org/simple/celltk2/ 2022-09-25T02:02:22,437 * https://www.piwheels.org/simple/celltk2/ 2022-09-25T02:02:22,438 Fetching project page and analyzing links: https://pypi.org/simple/celltk2/ 2022-09-25T02:02:22,439 Getting page https://pypi.org/simple/celltk2/ 2022-09-25T02:02:22,443 Found index url https://pypi.org/simple 2022-09-25T02:02:22,562 Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/ed/83/9f4882e169f9e3a0e94cb3b113f9d45d7b2c22ae3448fa5906093366a3a1/celltk2-0.4.0a0-py3-none-any.whl#sha256=14f4c7b1341a365e9feab2850c96e13d2b1ea5d8d17a0f17e52077baa126b9fd (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8) 2022-09-25T02:02:22,564 Found link https://files.pythonhosted.org/packages/81/99/f32cd7145396be309d76b0159c57e5bf42424efa7c7309920823ce9d07fa/celltk2-0.4.0a0.tar.gz#sha256=74dc00488a8d8fc455b36f8fd84bdfe44600b9909dde8f6f3da0b21e82716222 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.0a0 2022-09-25T02:02:22,564 Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/96/ef/2fa5812a59f2c7c6f4acb9f3ed5c532dc6b323a51ac15c9365f0fbf5ff5f/celltk2-0.4.0-py3-none-any.whl#sha256=389b63524bfb3902401aef3812e02a8598ebf60b565adc714808642299e002a6 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8) 2022-09-25T02:02:22,566 Found link https://files.pythonhosted.org/packages/22/f4/c83a2ae22ab7676b54df22729ffb2f87896ad3350cceb6c21fcee1393af1/celltk2-0.4.0.tar.gz#sha256=1d18823e382d6c0cfb793feb2ed2275ac0dcf7ba793a105d5af907792dae6aed (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.0 2022-09-25T02:02:22,566 Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/e2/30/0b53d24c5b9ad695b0b7b0725be4de60dd67419bfddd5f6ce3a708b20f02/celltk2-0.4.1-py3-none-any.whl#sha256=15c64413b8007cfa60a531ebe2667db893f578676fd7ebfc51696089a4008b0e (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8) 2022-09-25T02:02:22,568 Found link https://files.pythonhosted.org/packages/78/c7/350c706f5ba707f2b59a1325ee39c108bc3811b971fdab623255ccaa052a/celltk2-0.4.1.tar.gz#sha256=c53797329df322c75af3dbdaf3d34dd6e879ee27a485fd4e45390f2790ed312c (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.1 2022-09-25T02:02:22,568 Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/2c/40/3bb1c0cad1d671567680ac52f4ae01fb685ff632e524e1cb5d4ff168e1a6/celltk2-0.4.2-py3-none-any.whl#sha256=7ae070ee4f640e61aa872749020d283c5cb176fd736424f1cf8cab4b028e77e1 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8) 2022-09-25T02:02:22,570 Found link https://files.pythonhosted.org/packages/e9/f9/04707142add1a66b233fa06478e81e649d8fac5dc0a01cb9ab8f0df8ba98/celltk2-0.4.2.tar.gz#sha256=440e29eb94cff30aa946c95b2d8deccdfdb880926754880cfb66cecb94597581 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.2 2022-09-25T02:02:22,570 Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/00/11/d6df285a0e4bda814f9f76127e0000d25bd221baaf8e3b281f5f4f502d1a/celltk2-0.4.3b0-py3-none-any.whl#sha256=f062e6f08a98015d54bf352698de5c2d015f5c82302056ce0faa7d554465a951 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8) 2022-09-25T02:02:22,571 Found link https://files.pythonhosted.org/packages/83/74/e615088a297ac7b9a7fdcdb15b1955e20b76e6207b11d1064425d4da49ee/celltk2-0.4.3b0.tar.gz#sha256=5b8c3933702e371f6cb89db8234ca67306827919c9796f66c73efe6d9a46d1a7 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.3b0 2022-09-25T02:02:22,572 Fetching project page and analyzing links: https://www.piwheels.org/simple/celltk2/ 2022-09-25T02:02:22,573 Getting page https://www.piwheels.org/simple/celltk2/ 2022-09-25T02:02:22,575 Found index url https://www.piwheels.org/simple 2022-09-25T02:02:22,785 Skipping link: No binaries permitted for celltk2: https://www.piwheels.org/simple/celltk2/celltk2-0.4.2-py3-none-any.whl#sha256=c173997bd830fa0a97b9e2d2a20c3bc1f072e02a770565b72939c8926a307d8c (from https://www.piwheels.org/simple/celltk2/) (requires-python:>=3.8) 2022-09-25T02:02:22,786 Skipping link: No binaries permitted for celltk2: https://www.piwheels.org/simple/celltk2/celltk2-0.4.1-py3-none-any.whl#sha256=fa6b7fd862d4d4b473c7808dd0d80d8ac5096586ad0acfbe989d38f6b0ad0e66 (from https://www.piwheels.org/simple/celltk2/) (requires-python:>=3.8) 2022-09-25T02:02:22,786 Skipping link: No binaries permitted for celltk2: https://www.piwheels.org/simple/celltk2/celltk2-0.4.0-py3-none-any.whl#sha256=91b6c76a817162ea6e7f1a80f8a0079d51ac517258120c8e819a35ff3646dc4c (from https://www.piwheels.org/simple/celltk2/) (requires-python:>=3.8) 2022-09-25T02:02:22,787 Skipping link: No binaries permitted for celltk2: https://www.piwheels.org/simple/celltk2/celltk2-0.4.0a0-py3-none-any.whl#sha256=103ddfed3505ea4150aded5a67adb295d476eba6c0f924fcc85f91dd98bd53bf (from https://www.piwheels.org/simple/celltk2/) (requires-python:>=3.8) 2022-09-25T02:02:22,787 Skipping link: not a file: https://www.piwheels.org/simple/celltk2/ 2022-09-25T02:02:22,788 Skipping link: not a file: https://pypi.org/simple/celltk2/ 2022-09-25T02:02:22,834 Given no hashes to check 1 links for project 'celltk2': discarding no candidates 2022-09-25T02:02:22,876 Collecting celltk2==0.4.3b0 2022-09-25T02:02:22,880 Created temporary directory: /tmp/pip-unpack-o8mq7wvw 2022-09-25T02:02:24,185 Downloading celltk2-0.4.3b0.tar.gz (7.0 MB) 2022-09-25T02:02:26,812 Added celltk2==0.4.3b0 from https://files.pythonhosted.org/packages/83/74/e615088a297ac7b9a7fdcdb15b1955e20b76e6207b11d1064425d4da49ee/celltk2-0.4.3b0.tar.gz#sha256=5b8c3933702e371f6cb89db8234ca67306827919c9796f66c73efe6d9a46d1a7 to build tracker '/tmp/pip-build-tracker-f6k9fb15' 2022-09-25T02:02:26,821 Created temporary directory: /tmp/pip-build-env-95m5abh0 2022-09-25T02:02:26,842 Created temporary directory: /tmp/pip-standalone-pip-gqodaoxi 2022-09-25T02:02:29,246 Installing build dependencies: started 2022-09-25T02:02:29,249 Running command pip subprocess to install build dependencies 2022-09-25T02:02:40,532 Using pip 22.1.2 from /tmp/pip-standalone-pip-gqodaoxi/__env_pip__.zip/pip (python 3.9) 2022-09-25T02:02:42,574 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-09-25T02:02:46,707 Collecting setuptools>=42 2022-09-25T02:02:47,345 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.4.0-py3-none-any.whl (1.2 MB) 2022-09-25T02:02:58,540 Installing collected packages: setuptools 2022-09-25T02:03:03,963 Successfully installed setuptools-65.4.0 2022-09-25T02:03:04,177 --- Logging error --- 2022-09-25T02:03:04,193 Traceback (most recent call last): 2022-09-25T02:03:04,194 File "/tmp/pip-standalone-pip-gqodaoxi/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-09-25T02:03:04,194 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-09-25T02:03:04,194 File "/tmp/pip-standalone-pip-gqodaoxi/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-09-25T02:03:04,195 extend(render(renderable, render_options)) 2022-09-25T02:03:04,195 File "/tmp/pip-standalone-pip-gqodaoxi/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-09-25T02:03:04,196 for render_output in iter_render: 2022-09-25T02:03:04,196 File "/tmp/pip-standalone-pip-gqodaoxi/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-09-25T02:03:04,196 for line in lines: 2022-09-25T02:03:04,197 File "/tmp/pip-standalone-pip-gqodaoxi/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-09-25T02:03:04,197 for segment in segments: 2022-09-25T02:03:04,197 File "/tmp/pip-standalone-pip-gqodaoxi/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-09-25T02:03:04,198 renderable = rich_cast(renderable) 2022-09-25T02:03:04,198 File "/tmp/pip-standalone-pip-gqodaoxi/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-09-25T02:03:04,198 renderable = cast_method() 2022-09-25T02:03:04,199 File "/tmp/pip-standalone-pip-gqodaoxi/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-09-25T02:03:04,199 pip_cmd = get_best_invocation_for_this_pip() 2022-09-25T02:03:04,200 File "/tmp/pip-standalone-pip-gqodaoxi/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip 2022-09-25T02:03:04,200 if found_executable and os.path.samefile( 2022-09-25T02:03:04,200 File "/usr/lib/python3.9/genericpath.py", line 101, in samefile 2022-09-25T02:03:04,201 s2 = os.stat(f2) 2022-09-25T02:03:04,201 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9' 2022-09-25T02:03:04,201 Call stack: 2022-09-25T02:03:04,205 File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main 2022-09-25T02:03:04,205 return _run_code(code, main_globals, None, 2022-09-25T02:03:04,205 File "/usr/lib/python3.9/runpy.py", line 87, in _run_code 2022-09-25T02:03:04,206 exec(code, run_globals) 2022-09-25T02:03:04,206 File "/tmp/pip-standalone-pip-gqodaoxi/__env_pip__.zip/pip/__main__.py", line 31, in 2022-09-25T02:03:04,206 sys.exit(_main()) 2022-09-25T02:03:04,207 File "/tmp/pip-standalone-pip-gqodaoxi/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-09-25T02:03:04,207 return command.main(cmd_args) 2022-09-25T02:03:04,207 File "/tmp/pip-standalone-pip-gqodaoxi/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-09-25T02:03:04,207 return self._main(args) 2022-09-25T02:03:04,208 File "/tmp/pip-standalone-pip-gqodaoxi/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-09-25T02:03:04,208 self.handle_pip_version_check(options) 2022-09-25T02:03:04,209 File "/tmp/pip-standalone-pip-gqodaoxi/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-09-25T02:03:04,209 pip_self_version_check(session, options) 2022-09-25T02:03:04,209 File "/tmp/pip-standalone-pip-gqodaoxi/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-09-25T02:03:04,209 logger.info("[present-rich] %s", upgrade_prompt) 2022-09-25T02:03:04,210 File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info 2022-09-25T02:03:04,210 self._log(INFO, msg, args, **kwargs) 2022-09-25T02:03:04,210 File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log 2022-09-25T02:03:04,211 self.handle(record) 2022-09-25T02:03:04,211 File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle 2022-09-25T02:03:04,211 self.callHandlers(record) 2022-09-25T02:03:04,211 File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers 2022-09-25T02:03:04,212 hdlr.handle(record) 2022-09-25T02:03:04,212 File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle 2022-09-25T02:03:04,212 self.emit(record) 2022-09-25T02:03:04,213 File "/tmp/pip-standalone-pip-gqodaoxi/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-09-25T02:03:04,213 self.handleError(record) 2022-09-25T02:03:04,213 Message: '[present-rich] %s' 2022-09-25T02:03:04,213 Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),) 2022-09-25T02:03:04,748 Installing build dependencies: finished with status 'done' 2022-09-25T02:03:04,776 Getting requirements to build wheel: started 2022-09-25T02:03:04,779 Running command Getting requirements to build wheel 2022-09-25T02:03:10,895 /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:102: _ExperimentalProjectMetadata: Support for project metadata in `pyproject.toml` is still experimental and may be removed (or change) in future releases. 2022-09-25T02:03:10,896 warnings.warn(msg, _ExperimentalProjectMetadata) 2022-09-25T02:03:11,218 /usr/local/lib/python3.9/dist-packages/setuptools/config/_apply_pyprojecttoml.py:101: _WouldIgnoreField: !! 2022-09-25T02:03:11,220 ########################################################################## 2022-09-25T02:03:11,220 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-09-25T02:03:11,220 ########################################################################## 2022-09-25T02:03:11,221 The following seems to be defined outside of `pyproject.toml`: 2022-09-25T02:03:11,222 `dependencies = ['setuptools>=41.2.0', 'tensorflow>=2.7.0,<2.9.0 ; platform_machine != "arm64"', 'tensorflow-macos>=2.7.0<2.9.0 ; platform_machine == "arm64"', 'numpy>=1.20,<1.23', 'scipy>=1.6.3', 'scikit_learn>=1.0.1', 'scikit_image>=0.19.1', 'matplotlib>=3.4.1', 'plotly>=5.6.0', 'pandas>=1.3.1', 'cvxopt~=1.2.7', 'gurobipy>=9.5.0', 'h5py>=3.6.0', 'imageio>=2.13.0', 'mahotas>=1.4.5,<1.4.13', 'napari>=0.4.12', 'PyYAML>=6.0', 'SimpleITK>=2.1.1', 'tifffile>=2021.11.2', 'btrack>=0.4.2', 'colorcet~=3.0.0', 'seaborn~=0.11.2']` 2022-09-25T02:03:11,222 According to the spec (see the link bellow), however, setuptools CANNOT 2022-09-25T02:03:11,223 consider this value unless 'dependencies' is listed as `dynamic`. 2022-09-25T02:03:11,223 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-09-25T02:03:11,224 For the time being, `setuptools` will still consider the given value (as a 2022-09-25T02:03:11,224 **transitional** measure), but please note that future releases of setuptools will 2022-09-25T02:03:11,224 follow strictly the standard. 2022-09-25T02:03:11,225 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-09-25T02:03:11,225 remove the `[project]` table from your file and rely entirely on other means of 2022-09-25T02:03:11,226 configuration. 2022-09-25T02:03:11,227 !! 2022-09-25T02:03:11,227 warnings.warn(msg, _WouldIgnoreField) 2022-09-25T02:03:12,932 running egg_info 2022-09-25T02:03:13,537 writing celltk2.egg-info/PKG-INFO 2022-09-25T02:03:14,159 writing dependency_links to celltk2.egg-info/dependency_links.txt 2022-09-25T02:03:16,974 writing requirements to celltk2.egg-info/requires.txt 2022-09-25T02:03:17,540 writing top-level names to celltk2.egg-info/top_level.txt 2022-09-25T02:03:18,188 package init file 'celltk/core/__init__.py' not found (or not a regular file) 2022-09-25T02:03:18,229 reading manifest file 'celltk2.egg-info/SOURCES.txt' 2022-09-25T02:03:18,236 adding license file 'LICENSE' 2022-09-25T02:03:18,245 writing manifest file 'celltk2.egg-info/SOURCES.txt' 2022-09-25T02:03:18,546 Getting requirements to build wheel: finished with status 'done' 2022-09-25T02:03:18,572 Created temporary directory: /tmp/pip-standalone-pip-10c5z280 2022-09-25T02:03:20,813 Installing backend dependencies: started 2022-09-25T02:03:20,815 Running command pip subprocess to install backend dependencies 2022-09-25T02:03:32,202 Using pip 22.1.2 from /tmp/pip-standalone-pip-10c5z280/__env_pip__.zip/pip (python 3.9) 2022-09-25T02:03:34,281 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-09-25T02:03:35,286 Collecting wheel 2022-09-25T02:03:35,321 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-09-25T02:03:45,739 Installing collected packages: wheel 2022-09-25T02:03:46,043 Creating /tmp/pip-build-env-95m5abh0/normal/bin 2022-09-25T02:03:46,047 changing mode of /tmp/pip-build-env-95m5abh0/normal/bin/wheel to 755 2022-09-25T02:03:46,075 Successfully installed wheel-0.37.1 2022-09-25T02:03:46,280 --- Logging error --- 2022-09-25T02:03:46,295 Traceback (most recent call last): 2022-09-25T02:03:46,296 File "/tmp/pip-standalone-pip-10c5z280/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit 2022-09-25T02:03:46,296 self.console.print(renderable, overflow="ignore", crop=False, style=style) 2022-09-25T02:03:46,296 File "/tmp/pip-standalone-pip-10c5z280/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print 2022-09-25T02:03:46,297 extend(render(renderable, render_options)) 2022-09-25T02:03:46,297 File "/tmp/pip-standalone-pip-10c5z280/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render 2022-09-25T02:03:46,297 for render_output in iter_render: 2022-09-25T02:03:46,298 File "/tmp/pip-standalone-pip-10c5z280/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__ 2022-09-25T02:03:46,298 for line in lines: 2022-09-25T02:03:46,298 File "/tmp/pip-standalone-pip-10c5z280/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines 2022-09-25T02:03:46,299 for segment in segments: 2022-09-25T02:03:46,299 File "/tmp/pip-standalone-pip-10c5z280/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render 2022-09-25T02:03:46,299 renderable = rich_cast(renderable) 2022-09-25T02:03:46,300 File "/tmp/pip-standalone-pip-10c5z280/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast 2022-09-25T02:03:46,300 renderable = cast_method() 2022-09-25T02:03:46,300 File "/tmp/pip-standalone-pip-10c5z280/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__ 2022-09-25T02:03:46,301 pip_cmd = get_best_invocation_for_this_pip() 2022-09-25T02:03:46,301 File "/tmp/pip-standalone-pip-10c5z280/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip 2022-09-25T02:03:46,301 if found_executable and os.path.samefile( 2022-09-25T02:03:46,302 File "/usr/lib/python3.9/genericpath.py", line 101, in samefile 2022-09-25T02:03:46,302 s2 = os.stat(f2) 2022-09-25T02:03:46,302 FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9' 2022-09-25T02:03:46,303 Call stack: 2022-09-25T02:03:46,306 File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main 2022-09-25T02:03:46,307 return _run_code(code, main_globals, None, 2022-09-25T02:03:46,307 File "/usr/lib/python3.9/runpy.py", line 87, in _run_code 2022-09-25T02:03:46,308 exec(code, run_globals) 2022-09-25T02:03:46,308 File "/tmp/pip-standalone-pip-10c5z280/__env_pip__.zip/pip/__main__.py", line 31, in 2022-09-25T02:03:46,308 sys.exit(_main()) 2022-09-25T02:03:46,309 File "/tmp/pip-standalone-pip-10c5z280/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main 2022-09-25T02:03:46,309 return command.main(cmd_args) 2022-09-25T02:03:46,309 File "/tmp/pip-standalone-pip-10c5z280/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main 2022-09-25T02:03:46,309 return self._main(args) 2022-09-25T02:03:46,310 File "/tmp/pip-standalone-pip-10c5z280/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main 2022-09-25T02:03:46,310 self.handle_pip_version_check(options) 2022-09-25T02:03:46,310 File "/tmp/pip-standalone-pip-10c5z280/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check 2022-09-25T02:03:46,311 pip_self_version_check(session, options) 2022-09-25T02:03:46,311 File "/tmp/pip-standalone-pip-10c5z280/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check 2022-09-25T02:03:46,311 logger.info("[present-rich] %s", upgrade_prompt) 2022-09-25T02:03:46,312 File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info 2022-09-25T02:03:46,312 self._log(INFO, msg, args, **kwargs) 2022-09-25T02:03:46,312 File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log 2022-09-25T02:03:46,312 self.handle(record) 2022-09-25T02:03:46,313 File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle 2022-09-25T02:03:46,313 self.callHandlers(record) 2022-09-25T02:03:46,313 File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers 2022-09-25T02:03:46,314 hdlr.handle(record) 2022-09-25T02:03:46,314 File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle 2022-09-25T02:03:46,314 self.emit(record) 2022-09-25T02:03:46,314 File "/tmp/pip-standalone-pip-10c5z280/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit 2022-09-25T02:03:46,315 self.handleError(record) 2022-09-25T02:03:46,315 Message: '[present-rich] %s' 2022-09-25T02:03:46,315 Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),) 2022-09-25T02:03:46,784 Installing backend dependencies: finished with status 'done' 2022-09-25T02:03:46,806 Created temporary directory: /tmp/pip-modern-metadata-dqa_iuzr 2022-09-25T02:03:46,812 Preparing metadata (pyproject.toml): started 2022-09-25T02:03:46,814 Running command Preparing metadata (pyproject.toml) 2022-09-25T02:03:52,722 /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:102: _ExperimentalProjectMetadata: Support for project metadata in `pyproject.toml` is still experimental and may be removed (or change) in future releases. 2022-09-25T02:03:52,723 warnings.warn(msg, _ExperimentalProjectMetadata) 2022-09-25T02:03:53,033 /usr/local/lib/python3.9/dist-packages/setuptools/config/_apply_pyprojecttoml.py:101: _WouldIgnoreField: !! 2022-09-25T02:03:53,034 ########################################################################## 2022-09-25T02:03:53,034 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-09-25T02:03:53,035 ########################################################################## 2022-09-25T02:03:53,035 The following seems to be defined outside of `pyproject.toml`: 2022-09-25T02:03:53,036 `dependencies = ['setuptools>=41.2.0', 'tensorflow>=2.7.0,<2.9.0 ; platform_machine != "arm64"', 'tensorflow-macos>=2.7.0<2.9.0 ; platform_machine == "arm64"', 'numpy>=1.20,<1.23', 'scipy>=1.6.3', 'scikit_learn>=1.0.1', 'scikit_image>=0.19.1', 'matplotlib>=3.4.1', 'plotly>=5.6.0', 'pandas>=1.3.1', 'cvxopt~=1.2.7', 'gurobipy>=9.5.0', 'h5py>=3.6.0', 'imageio>=2.13.0', 'mahotas>=1.4.5,<1.4.13', 'napari>=0.4.12', 'PyYAML>=6.0', 'SimpleITK>=2.1.1', 'tifffile>=2021.11.2', 'btrack>=0.4.2', 'colorcet~=3.0.0', 'seaborn~=0.11.2']` 2022-09-25T02:03:53,037 According to the spec (see the link bellow), however, setuptools CANNOT 2022-09-25T02:03:53,037 consider this value unless 'dependencies' is listed as `dynamic`. 2022-09-25T02:03:53,037 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-09-25T02:03:53,038 For the time being, `setuptools` will still consider the given value (as a 2022-09-25T02:03:53,039 **transitional** measure), but please note that future releases of setuptools will 2022-09-25T02:03:53,039 follow strictly the standard. 2022-09-25T02:03:53,040 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-09-25T02:03:53,040 remove the `[project]` table from your file and rely entirely on other means of 2022-09-25T02:03:53,040 configuration. 2022-09-25T02:03:53,041 !! 2022-09-25T02:03:53,042 warnings.warn(msg, _WouldIgnoreField) 2022-09-25T02:03:54,700 running dist_info 2022-09-25T02:03:55,291 creating /tmp/pip-modern-metadata-dqa_iuzr/celltk2.egg-info 2022-09-25T02:03:55,935 writing /tmp/pip-modern-metadata-dqa_iuzr/celltk2.egg-info/PKG-INFO 2022-09-25T02:03:56,493 writing dependency_links to /tmp/pip-modern-metadata-dqa_iuzr/celltk2.egg-info/dependency_links.txt 2022-09-25T02:03:59,262 writing requirements to /tmp/pip-modern-metadata-dqa_iuzr/celltk2.egg-info/requires.txt 2022-09-25T02:03:59,816 writing top-level names to /tmp/pip-modern-metadata-dqa_iuzr/celltk2.egg-info/top_level.txt 2022-09-25T02:03:59,819 writing manifest file '/tmp/pip-modern-metadata-dqa_iuzr/celltk2.egg-info/SOURCES.txt' 2022-09-25T02:04:00,440 package init file 'celltk/core/__init__.py' not found (or not a regular file) 2022-09-25T02:04:00,499 reading manifest file '/tmp/pip-modern-metadata-dqa_iuzr/celltk2.egg-info/SOURCES.txt' 2022-09-25T02:04:00,502 adding license file 'LICENSE' 2022-09-25T02:04:00,510 writing manifest file '/tmp/pip-modern-metadata-dqa_iuzr/celltk2.egg-info/SOURCES.txt' 2022-09-25T02:04:00,512 creating '/tmp/pip-modern-metadata-dqa_iuzr/celltk2-0.4.3b0.dist-info' 2022-09-25T02:04:00,709 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-09-25T02:04:01,024 Preparing metadata (pyproject.toml): finished with status 'done' 2022-09-25T02:04:01,039 Source in /tmp/pip-wheel-ajbejqx2/celltk2_fa41f6e12b2044f18065df7395d4038d has version 0.4.3b0, which satisfies requirement celltk2==0.4.3b0 from https://files.pythonhosted.org/packages/83/74/e615088a297ac7b9a7fdcdb15b1955e20b76e6207b11d1064425d4da49ee/celltk2-0.4.3b0.tar.gz#sha256=5b8c3933702e371f6cb89db8234ca67306827919c9796f66c73efe6d9a46d1a7 2022-09-25T02:04:01,041 Removed celltk2==0.4.3b0 from https://files.pythonhosted.org/packages/83/74/e615088a297ac7b9a7fdcdb15b1955e20b76e6207b11d1064425d4da49ee/celltk2-0.4.3b0.tar.gz#sha256=5b8c3933702e371f6cb89db8234ca67306827919c9796f66c73efe6d9a46d1a7 from build tracker '/tmp/pip-build-tracker-f6k9fb15' 2022-09-25T02:04:01,054 Created temporary directory: /tmp/pip-unpack-zxuimql9 2022-09-25T02:04:01,055 Building wheels for collected packages: celltk2 2022-09-25T02:04:01,065 Created temporary directory: /tmp/pip-wheel-5yd28uoy 2022-09-25T02:04:01,065 Destination directory: /tmp/pip-wheel-5yd28uoy 2022-09-25T02:04:01,070 Building wheel for celltk2 (pyproject.toml): started 2022-09-25T02:04:01,072 Running command Building wheel for celltk2 (pyproject.toml) 2022-09-25T02:04:07,069 /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:102: _ExperimentalProjectMetadata: Support for project metadata in `pyproject.toml` is still experimental and may be removed (or change) in future releases. 2022-09-25T02:04:07,071 warnings.warn(msg, _ExperimentalProjectMetadata) 2022-09-25T02:04:07,384 /usr/local/lib/python3.9/dist-packages/setuptools/config/_apply_pyprojecttoml.py:101: _WouldIgnoreField: !! 2022-09-25T02:04:07,386 ########################################################################## 2022-09-25T02:04:07,386 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-09-25T02:04:07,386 ########################################################################## 2022-09-25T02:04:07,387 The following seems to be defined outside of `pyproject.toml`: 2022-09-25T02:04:07,388 `dependencies = ['setuptools>=41.2.0', 'tensorflow>=2.7.0,<2.9.0 ; platform_machine != "arm64"', 'tensorflow-macos>=2.7.0<2.9.0 ; platform_machine == "arm64"', 'numpy>=1.20,<1.23', 'scipy>=1.6.3', 'scikit_learn>=1.0.1', 'scikit_image>=0.19.1', 'matplotlib>=3.4.1', 'plotly>=5.6.0', 'pandas>=1.3.1', 'cvxopt~=1.2.7', 'gurobipy>=9.5.0', 'h5py>=3.6.0', 'imageio>=2.13.0', 'mahotas>=1.4.5,<1.4.13', 'napari>=0.4.12', 'PyYAML>=6.0', 'SimpleITK>=2.1.1', 'tifffile>=2021.11.2', 'btrack>=0.4.2', 'colorcet~=3.0.0', 'seaborn~=0.11.2']` 2022-09-25T02:04:07,388 According to the spec (see the link bellow), however, setuptools CANNOT 2022-09-25T02:04:07,389 consider this value unless 'dependencies' is listed as `dynamic`. 2022-09-25T02:04:07,389 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-09-25T02:04:07,390 For the time being, `setuptools` will still consider the given value (as a 2022-09-25T02:04:07,390 **transitional** measure), but please note that future releases of setuptools will 2022-09-25T02:04:07,391 follow strictly the standard. 2022-09-25T02:04:07,391 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-09-25T02:04:07,392 remove the `[project]` table from your file and rely entirely on other means of 2022-09-25T02:04:07,392 configuration. 2022-09-25T02:04:07,393 !! 2022-09-25T02:04:07,394 warnings.warn(msg, _WouldIgnoreField) 2022-09-25T02:04:08,580 running bdist_wheel 2022-09-25T02:04:09,271 running build 2022-09-25T02:04:09,271 running build_py 2022-09-25T02:04:09,871 creating build 2022-09-25T02:04:09,872 creating build/lib 2022-09-25T02:04:09,873 creating build/lib/celltk 2022-09-25T02:04:09,875 copying celltk/track.py -> build/lib/celltk 2022-09-25T02:04:09,881 copying celltk/extract.py -> build/lib/celltk 2022-09-25T02:04:09,885 copying celltk/segment.py -> build/lib/celltk 2022-09-25T02:04:09,892 copying celltk/evaluate.py -> build/lib/celltk 2022-09-25T02:04:09,895 copying celltk/__init__.py -> build/lib/celltk 2022-09-25T02:04:09,899 copying celltk/process.py -> build/lib/celltk 2022-09-25T02:04:09,907 creating build/lib/celltk/utils 2022-09-25T02:04:09,908 copying celltk/utils/operation_utils.py -> build/lib/celltk/utils 2022-09-25T02:04:09,914 copying celltk/utils/process_utils.py -> build/lib/celltk/utils 2022-09-25T02:04:09,917 copying celltk/utils/_types.py -> build/lib/celltk/utils 2022-09-25T02:04:09,921 copying celltk/utils/filter_utils.py -> build/lib/celltk/utils 2022-09-25T02:04:09,925 copying celltk/utils/peak_utils.py -> build/lib/celltk/utils 2022-09-25T02:04:09,930 copying celltk/utils/bayes_utils.py -> build/lib/celltk/utils 2022-09-25T02:04:09,933 copying celltk/utils/plot_utils.py -> build/lib/celltk/utils 2022-09-25T02:04:09,942 copying celltk/utils/kit_sch_ge_utils.py -> build/lib/celltk/utils 2022-09-25T02:04:09,946 copying celltk/utils/slurm_utils.py -> build/lib/celltk/utils 2022-09-25T02:04:09,951 copying celltk/utils/estimator_utils.py -> build/lib/celltk/utils 2022-09-25T02:04:09,955 copying celltk/utils/__init__.py -> build/lib/celltk/utils 2022-09-25T02:04:09,958 copying celltk/utils/_fastkde.py -> build/lib/celltk/utils 2022-09-25T02:04:09,961 copying celltk/utils/cli_utils.py -> build/lib/celltk/utils 2022-09-25T02:04:09,966 copying celltk/utils/unet_model.py -> build/lib/celltk/utils 2022-09-25T02:04:09,971 copying celltk/utils/log_utils.py -> build/lib/celltk/utils 2022-09-25T02:04:09,974 copying celltk/utils/metric_utils.py -> build/lib/celltk/utils 2022-09-25T02:04:09,977 copying celltk/utils/file_utils.py -> build/lib/celltk/utils 2022-09-25T02:04:09,981 copying celltk/utils/utils.py -> build/lib/celltk/utils 2022-09-25T02:04:09,986 package init file 'celltk/core/__init__.py' not found (or not a regular file) 2022-09-25T02:04:09,988 creating build/lib/celltk/core 2022-09-25T02:04:09,990 copying celltk/core/operation.py -> build/lib/celltk/core 2022-09-25T02:04:09,996 copying celltk/core/pipeline.py -> build/lib/celltk/core 2022-09-25T02:04:10,001 copying celltk/core/orchestrator.py -> build/lib/celltk/core 2022-09-25T02:04:10,006 copying celltk/core/arrays.py -> build/lib/celltk/core 2022-09-25T02:04:10,015 creating build/lib/celltk/external 2022-09-25T02:04:10,016 creating build/lib/celltk/external/kit_sch_ge 2022-09-25T02:04:10,018 copying celltk/external/kit_sch_ge/run_tracking.py -> build/lib/celltk/external/kit_sch_ge 2022-09-25T02:04:10,022 copying celltk/external/kit_sch_ge/config.py -> build/lib/celltk/external/kit_sch_ge 2022-09-25T02:04:10,025 copying celltk/external/kit_sch_ge/create_synth_segm_data.py -> build/lib/celltk/external/kit_sch_ge 2022-09-25T02:04:10,030 copying celltk/external/kit_sch_ge/__init__.py -> build/lib/celltk/external/kit_sch_ge 2022-09-25T02:04:10,034 copying celltk/external/kit_sch_ge/setup.py -> build/lib/celltk/external/kit_sch_ge 2022-09-25T02:04:10,039 creating build/lib/celltk/external/misic 2022-09-25T02:04:10,040 copying celltk/external/misic/__init__.py -> build/lib/celltk/external/misic 2022-09-25T02:04:10,043 copying celltk/external/misic/misic.py -> build/lib/celltk/external/misic 2022-09-25T02:04:10,047 copying celltk/external/misic/extras.py -> build/lib/celltk/external/misic 2022-09-25T02:04:10,050 copying celltk/external/misic/utils.py -> build/lib/celltk/external/misic 2022-09-25T02:04:10,056 creating build/lib/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:10,058 copying celltk/external/kit_sch_ge/tracker/export.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:10,063 copying celltk/external/kit_sch_ge/tracker/graph.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:10,069 copying celltk/external/kit_sch_ge/tracker/tracking.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:10,073 copying celltk/external/kit_sch_ge/tracker/__init__.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:10,076 copying celltk/external/kit_sch_ge/tracker/postprocessing.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:10,082 copying celltk/external/kit_sch_ge/tracker/extract_data.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:10,085 copying celltk/external/kit_sch_ge/tracker/flow.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:10,088 copying celltk/external/kit_sch_ge/tracker/split_objects.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:10,093 copying celltk/external/kit_sch_ge/tracker/utils.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:10,096 running egg_info 2022-09-25T02:04:11,349 writing celltk2.egg-info/PKG-INFO 2022-09-25T02:04:11,919 writing dependency_links to celltk2.egg-info/dependency_links.txt 2022-09-25T02:04:14,749 writing requirements to celltk2.egg-info/requires.txt 2022-09-25T02:04:15,317 writing top-level names to celltk2.egg-info/top_level.txt 2022-09-25T02:04:15,370 reading manifest file 'celltk2.egg-info/SOURCES.txt' 2022-09-25T02:04:15,376 adding license file 'LICENSE' 2022-09-25T02:04:15,385 writing manifest file 'celltk2.egg-info/SOURCES.txt' 2022-09-25T02:04:15,392 copying celltk/external/misic/MiSiCv2.h5 -> build/lib/celltk/external/misic 2022-09-25T02:04:16,915 installing to build/bdist.linux-armv7l/wheel 2022-09-25T02:04:16,916 running install 2022-09-25T02:04:16,975 running install_lib 2022-09-25T02:04:17,582 creating build/bdist.linux-armv7l 2022-09-25T02:04:17,582 creating build/bdist.linux-armv7l/wheel 2022-09-25T02:04:17,586 creating build/bdist.linux-armv7l/wheel/celltk 2022-09-25T02:04:17,587 copying build/lib/celltk/track.py -> build/bdist.linux-armv7l/wheel/celltk 2022-09-25T02:04:17,595 creating build/bdist.linux-armv7l/wheel/celltk/external 2022-09-25T02:04:17,597 creating build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-09-25T02:04:17,599 copying build/lib/celltk/external/kit_sch_ge/run_tracking.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-09-25T02:04:17,603 copying build/lib/celltk/external/kit_sch_ge/config.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-09-25T02:04:17,607 copying build/lib/celltk/external/kit_sch_ge/create_synth_segm_data.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-09-25T02:04:17,612 copying build/lib/celltk/external/kit_sch_ge/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-09-25T02:04:17,617 creating build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:17,619 copying build/lib/celltk/external/kit_sch_ge/tracker/export.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:17,624 copying build/lib/celltk/external/kit_sch_ge/tracker/graph.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:17,631 copying build/lib/celltk/external/kit_sch_ge/tracker/tracking.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:17,636 copying build/lib/celltk/external/kit_sch_ge/tracker/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:17,639 copying build/lib/celltk/external/kit_sch_ge/tracker/postprocessing.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:17,644 copying build/lib/celltk/external/kit_sch_ge/tracker/extract_data.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:17,648 copying build/lib/celltk/external/kit_sch_ge/tracker/flow.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:17,651 copying build/lib/celltk/external/kit_sch_ge/tracker/split_objects.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:17,656 copying build/lib/celltk/external/kit_sch_ge/tracker/utils.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-09-25T02:04:17,659 copying build/lib/celltk/external/kit_sch_ge/setup.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-09-25T02:04:17,664 creating build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-09-25T02:04:17,666 copying build/lib/celltk/external/misic/MiSiCv2.h5 -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-09-25T02:04:18,045 copying build/lib/celltk/external/misic/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-09-25T02:04:18,048 copying build/lib/celltk/external/misic/misic.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-09-25T02:04:18,051 copying build/lib/celltk/external/misic/extras.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-09-25T02:04:18,054 copying build/lib/celltk/external/misic/utils.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-09-25T02:04:18,059 copying build/lib/celltk/extract.py -> build/bdist.linux-armv7l/wheel/celltk 2022-09-25T02:04:18,064 copying build/lib/celltk/segment.py -> build/bdist.linux-armv7l/wheel/celltk 2022-09-25T02:04:18,071 copying build/lib/celltk/evaluate.py -> build/bdist.linux-armv7l/wheel/celltk 2022-09-25T02:04:18,075 copying build/lib/celltk/__init__.py -> build/bdist.linux-armv7l/wheel/celltk 2022-09-25T02:04:18,079 creating build/bdist.linux-armv7l/wheel/celltk/core 2022-09-25T02:04:18,081 copying build/lib/celltk/core/operation.py -> build/bdist.linux-armv7l/wheel/celltk/core 2022-09-25T02:04:18,088 copying build/lib/celltk/core/pipeline.py -> build/bdist.linux-armv7l/wheel/celltk/core 2022-09-25T02:04:18,093 copying build/lib/celltk/core/orchestrator.py -> build/bdist.linux-armv7l/wheel/celltk/core 2022-09-25T02:04:18,098 copying build/lib/celltk/core/arrays.py -> build/bdist.linux-armv7l/wheel/celltk/core 2022-09-25T02:04:18,106 copying build/lib/celltk/process.py -> build/bdist.linux-armv7l/wheel/celltk 2022-09-25T02:04:18,113 creating build/bdist.linux-armv7l/wheel/celltk/utils 2022-09-25T02:04:18,114 copying build/lib/celltk/utils/operation_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-09-25T02:04:18,120 copying build/lib/celltk/utils/process_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-09-25T02:04:18,123 copying build/lib/celltk/utils/_types.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-09-25T02:04:18,127 copying build/lib/celltk/utils/filter_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-09-25T02:04:18,131 copying build/lib/celltk/utils/peak_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-09-25T02:04:18,135 copying build/lib/celltk/utils/bayes_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-09-25T02:04:18,139 copying build/lib/celltk/utils/plot_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-09-25T02:04:18,148 copying build/lib/celltk/utils/kit_sch_ge_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-09-25T02:04:18,152 copying build/lib/celltk/utils/slurm_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-09-25T02:04:18,158 copying build/lib/celltk/utils/estimator_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-09-25T02:04:18,162 copying build/lib/celltk/utils/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-09-25T02:04:18,165 copying build/lib/celltk/utils/_fastkde.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-09-25T02:04:18,169 copying build/lib/celltk/utils/cli_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-09-25T02:04:18,173 copying build/lib/celltk/utils/unet_model.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-09-25T02:04:18,179 copying build/lib/celltk/utils/log_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-09-25T02:04:18,182 copying build/lib/celltk/utils/metric_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-09-25T02:04:18,185 copying build/lib/celltk/utils/file_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-09-25T02:04:18,189 copying build/lib/celltk/utils/utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-09-25T02:04:18,193 running install_egg_info 2022-09-25T02:04:18,791 Copying celltk2.egg-info to build/bdist.linux-armv7l/wheel/celltk2-0.4.3b0-py3.9.egg-info 2022-09-25T02:04:18,812 running install_scripts 2022-09-25T02:04:18,919 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-09-25T02:04:18,929 creating build/bdist.linux-armv7l/wheel/celltk2-0.4.3b0.dist-info/WHEEL 2022-09-25T02:04:18,933 creating '/tmp/pip-wheel-5yd28uoy/tmp3xa1rz2i/celltk2-0.4.3b0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-09-25T02:04:18,938 adding 'celltk/__init__.py' 2022-09-25T02:04:18,942 adding 'celltk/evaluate.py' 2022-09-25T02:04:18,947 adding 'celltk/extract.py' 2022-09-25T02:04:18,955 adding 'celltk/process.py' 2022-09-25T02:04:18,967 adding 'celltk/segment.py' 2022-09-25T02:04:18,975 adding 'celltk/track.py' 2022-09-25T02:04:18,994 adding 'celltk/core/arrays.py' 2022-09-25T02:04:19,007 adding 'celltk/core/operation.py' 2022-09-25T02:04:19,015 adding 'celltk/core/orchestrator.py' 2022-09-25T02:04:19,025 adding 'celltk/core/pipeline.py' 2022-09-25T02:04:19,030 adding 'celltk/external/kit_sch_ge/__init__.py' 2022-09-25T02:04:19,033 adding 'celltk/external/kit_sch_ge/config.py' 2022-09-25T02:04:19,040 adding 'celltk/external/kit_sch_ge/create_synth_segm_data.py' 2022-09-25T02:04:19,043 adding 'celltk/external/kit_sch_ge/run_tracking.py' 2022-09-25T02:04:19,046 adding 'celltk/external/kit_sch_ge/setup.py' 2022-09-25T02:04:19,049 adding 'celltk/external/kit_sch_ge/tracker/__init__.py' 2022-09-25T02:04:19,053 adding 'celltk/external/kit_sch_ge/tracker/export.py' 2022-09-25T02:04:19,056 adding 'celltk/external/kit_sch_ge/tracker/extract_data.py' 2022-09-25T02:04:19,059 adding 'celltk/external/kit_sch_ge/tracker/flow.py' 2022-09-25T02:04:19,071 adding 'celltk/external/kit_sch_ge/tracker/graph.py' 2022-09-25T02:04:19,083 adding 'celltk/external/kit_sch_ge/tracker/postprocessing.py' 2022-09-25T02:04:19,087 adding 'celltk/external/kit_sch_ge/tracker/split_objects.py' 2022-09-25T02:04:19,093 adding 'celltk/external/kit_sch_ge/tracker/tracking.py' 2022-09-25T02:04:19,096 adding 'celltk/external/kit_sch_ge/tracker/utils.py' 2022-09-25T02:04:21,808 adding 'celltk/external/misic/MiSiCv2.h5' 2022-09-25T02:04:21,961 adding 'celltk/external/misic/__init__.py' 2022-09-25T02:04:21,963 adding 'celltk/external/misic/extras.py' 2022-09-25T02:04:21,966 adding 'celltk/external/misic/misic.py' 2022-09-25T02:04:21,969 adding 'celltk/external/misic/utils.py' 2022-09-25T02:04:21,973 adding 'celltk/utils/__init__.py' 2022-09-25T02:04:21,976 adding 'celltk/utils/_fastkde.py' 2022-09-25T02:04:21,979 adding 'celltk/utils/_types.py' 2022-09-25T02:04:21,982 adding 'celltk/utils/bayes_utils.py' 2022-09-25T02:04:21,985 adding 'celltk/utils/cli_utils.py' 2022-09-25T02:04:21,988 adding 'celltk/utils/estimator_utils.py' 2022-09-25T02:04:21,991 adding 'celltk/utils/file_utils.py' 2022-09-25T02:04:21,993 adding 'celltk/utils/filter_utils.py' 2022-09-25T02:04:21,997 adding 'celltk/utils/kit_sch_ge_utils.py' 2022-09-25T02:04:22,000 adding 'celltk/utils/log_utils.py' 2022-09-25T02:04:22,003 adding 'celltk/utils/metric_utils.py' 2022-09-25T02:04:22,013 adding 'celltk/utils/operation_utils.py' 2022-09-25T02:04:22,019 adding 'celltk/utils/peak_utils.py' 2022-09-25T02:04:22,044 adding 'celltk/utils/plot_utils.py' 2022-09-25T02:04:22,049 adding 'celltk/utils/process_utils.py' 2022-09-25T02:04:22,057 adding 'celltk/utils/slurm_utils.py' 2022-09-25T02:04:22,065 adding 'celltk/utils/unet_model.py' 2022-09-25T02:04:22,071 adding 'celltk/utils/utils.py' 2022-09-25T02:04:22,075 adding 'celltk2-0.4.3b0.dist-info/LICENSE' 2022-09-25T02:04:22,078 adding 'celltk2-0.4.3b0.dist-info/METADATA' 2022-09-25T02:04:22,080 adding 'celltk2-0.4.3b0.dist-info/WHEEL' 2022-09-25T02:04:22,081 adding 'celltk2-0.4.3b0.dist-info/top_level.txt' 2022-09-25T02:04:22,084 adding 'celltk2-0.4.3b0.dist-info/RECORD' 2022-09-25T02:04:22,345 removing build/bdist.linux-armv7l/wheel 2022-09-25T02:04:22,694 Building wheel for celltk2 (pyproject.toml): finished with status 'done' 2022-09-25T02:04:23,050 Created wheel for celltk2: filename=celltk2-0.4.3b0-py3-none-any.whl size=6966877 sha256=e18728024f1e2e27ab04b432baec2c5bcf0a508ed2048f192b4383a3268f1d58 2022-09-25T02:04:23,052 Stored in directory: /tmp/pip-ephem-wheel-cache-sgw0eo6i/wheels/53/2f/aa/db03288381091019dc6e217409bf6b6796cdee61954b6c7ae4 2022-09-25T02:04:23,086 Successfully built celltk2 2022-09-25T02:04:23,547 Removed build tracker: '/tmp/pip-build-tracker-f6k9fb15'