2022-09-25T17:28:20,680 Created temporary directory: /tmp/pip-ephem-wheel-cache-2oxhw9yb
2022-09-25T17:28:20,685 Created temporary directory: /tmp/pip-build-tracker-e7m6xrj7
2022-09-25T17:28:20,686 Initialized build tracking at /tmp/pip-build-tracker-e7m6xrj7
2022-09-25T17:28:20,686 Created build tracker: /tmp/pip-build-tracker-e7m6xrj7
2022-09-25T17:28:20,687 Entered build tracker: /tmp/pip-build-tracker-e7m6xrj7
2022-09-25T17:28:20,688 Created temporary directory: /tmp/pip-wheel-jptppq7l
2022-09-25T17:28:20,756 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-09-25T17:28:20,764 2 location(s) to search for versions of celltk2:
2022-09-25T17:28:20,764 * https://pypi.org/simple/celltk2/
2022-09-25T17:28:20,764 * https://www.piwheels.org/simple/celltk2/
2022-09-25T17:28:20,766 Fetching project page and analyzing links: https://pypi.org/simple/celltk2/
2022-09-25T17:28:20,767 Getting page https://pypi.org/simple/celltk2/
2022-09-25T17:28:20,770 Found index url https://pypi.org/simple
2022-09-25T17:28:20,897   Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/ed/83/9f4882e169f9e3a0e94cb3b113f9d45d7b2c22ae3448fa5906093366a3a1/celltk2-0.4.0a0-py3-none-any.whl#sha256=14f4c7b1341a365e9feab2850c96e13d2b1ea5d8d17a0f17e52077baa126b9fd (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8)
2022-09-25T17:28:20,899   Found link https://files.pythonhosted.org/packages/81/99/f32cd7145396be309d76b0159c57e5bf42424efa7c7309920823ce9d07fa/celltk2-0.4.0a0.tar.gz#sha256=74dc00488a8d8fc455b36f8fd84bdfe44600b9909dde8f6f3da0b21e82716222 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.0a0
2022-09-25T17:28:20,900   Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/96/ef/2fa5812a59f2c7c6f4acb9f3ed5c532dc6b323a51ac15c9365f0fbf5ff5f/celltk2-0.4.0-py3-none-any.whl#sha256=389b63524bfb3902401aef3812e02a8598ebf60b565adc714808642299e002a6 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8)
2022-09-25T17:28:20,901   Found link https://files.pythonhosted.org/packages/22/f4/c83a2ae22ab7676b54df22729ffb2f87896ad3350cceb6c21fcee1393af1/celltk2-0.4.0.tar.gz#sha256=1d18823e382d6c0cfb793feb2ed2275ac0dcf7ba793a105d5af907792dae6aed (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.0
2022-09-25T17:28:20,901   Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/e2/30/0b53d24c5b9ad695b0b7b0725be4de60dd67419bfddd5f6ce3a708b20f02/celltk2-0.4.1-py3-none-any.whl#sha256=15c64413b8007cfa60a531ebe2667db893f578676fd7ebfc51696089a4008b0e (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8)
2022-09-25T17:28:20,903   Found link https://files.pythonhosted.org/packages/78/c7/350c706f5ba707f2b59a1325ee39c108bc3811b971fdab623255ccaa052a/celltk2-0.4.1.tar.gz#sha256=c53797329df322c75af3dbdaf3d34dd6e879ee27a485fd4e45390f2790ed312c (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.1
2022-09-25T17:28:20,903   Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/2c/40/3bb1c0cad1d671567680ac52f4ae01fb685ff632e524e1cb5d4ff168e1a6/celltk2-0.4.2-py3-none-any.whl#sha256=7ae070ee4f640e61aa872749020d283c5cb176fd736424f1cf8cab4b028e77e1 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8)
2022-09-25T17:28:20,905   Found link https://files.pythonhosted.org/packages/e9/f9/04707142add1a66b233fa06478e81e649d8fac5dc0a01cb9ab8f0df8ba98/celltk2-0.4.2.tar.gz#sha256=440e29eb94cff30aa946c95b2d8deccdfdb880926754880cfb66cecb94597581 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.2
2022-09-25T17:28:20,905   Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/00/11/d6df285a0e4bda814f9f76127e0000d25bd221baaf8e3b281f5f4f502d1a/celltk2-0.4.3b0-py3-none-any.whl#sha256=f062e6f08a98015d54bf352698de5c2d015f5c82302056ce0faa7d554465a951 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8)
2022-09-25T17:28:20,907   Found link https://files.pythonhosted.org/packages/83/74/e615088a297ac7b9a7fdcdb15b1955e20b76e6207b11d1064425d4da49ee/celltk2-0.4.3b0.tar.gz#sha256=5b8c3933702e371f6cb89db8234ca67306827919c9796f66c73efe6d9a46d1a7 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.3b0
2022-09-25T17:28:20,907   Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/30/98/b823b0e81c337f4973421f95d145f13ede1bb6eb5a1a140867877c70d7e8/celltk2-0.4.3b1-py3-none-any.whl#sha256=c7a9a99cb411e8727c789ea685c118239f44e10b28f54741f792fbab06504601 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.9)
2022-09-25T17:28:20,908   Found link https://files.pythonhosted.org/packages/36/16/cc08bd3e28e8081f15227b436e5c24d909256b238587fbb57655a49e4073/celltk2-0.4.3b1.tar.gz#sha256=4727382c029fed5ed3ed1db836c42707b707eab3e598a49bf2ee9ac1c5a7bf78 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.9), version: 0.4.3b1
2022-09-25T17:28:20,909 Fetching project page and analyzing links: https://www.piwheels.org/simple/celltk2/
2022-09-25T17:28:20,910 Getting page https://www.piwheels.org/simple/celltk2/
2022-09-25T17:28:20,912 Found index url https://www.piwheels.org/simple
2022-09-25T17:28:21,127   Skipping link: No binaries permitted for celltk2: https://www.piwheels.org/simple/celltk2/celltk2-0.4.3b0-py3-none-any.whl#sha256=e18728024f1e2e27ab04b432baec2c5bcf0a508ed2048f192b4383a3268f1d58 (from https://www.piwheels.org/simple/celltk2/) (requires-python:>=3.8)
2022-09-25T17:28:21,128   Skipping link: No binaries permitted for celltk2: https://www.piwheels.org/simple/celltk2/celltk2-0.4.2-py3-none-any.whl#sha256=c173997bd830fa0a97b9e2d2a20c3bc1f072e02a770565b72939c8926a307d8c (from https://www.piwheels.org/simple/celltk2/) (requires-python:>=3.8)
2022-09-25T17:28:21,129   Skipping link: No binaries permitted for celltk2: https://www.piwheels.org/simple/celltk2/celltk2-0.4.1-py3-none-any.whl#sha256=fa6b7fd862d4d4b473c7808dd0d80d8ac5096586ad0acfbe989d38f6b0ad0e66 (from https://www.piwheels.org/simple/celltk2/) (requires-python:>=3.8)
2022-09-25T17:28:21,129   Skipping link: No binaries permitted for celltk2: https://www.piwheels.org/simple/celltk2/celltk2-0.4.0-py3-none-any.whl#sha256=91b6c76a817162ea6e7f1a80f8a0079d51ac517258120c8e819a35ff3646dc4c (from https://www.piwheels.org/simple/celltk2/) (requires-python:>=3.8)
2022-09-25T17:28:21,129   Skipping link: No binaries permitted for celltk2: https://www.piwheels.org/simple/celltk2/celltk2-0.4.0a0-py3-none-any.whl#sha256=103ddfed3505ea4150aded5a67adb295d476eba6c0f924fcc85f91dd98bd53bf (from https://www.piwheels.org/simple/celltk2/) (requires-python:>=3.8)
2022-09-25T17:28:21,130 Skipping link: not a file: https://www.piwheels.org/simple/celltk2/
2022-09-25T17:28:21,131 Skipping link: not a file: https://pypi.org/simple/celltk2/
2022-09-25T17:28:21,178 Given no hashes to check 1 links for project 'celltk2': discarding no candidates
2022-09-25T17:28:21,220 Collecting celltk2==0.4.3b1
2022-09-25T17:28:21,225   Created temporary directory: /tmp/pip-unpack-7um8gpuq
2022-09-25T17:28:22,559   Downloading celltk2-0.4.3b1.tar.gz (7.0 MB)
2022-09-25T17:28:25,100   Added celltk2==0.4.3b1 from https://files.pythonhosted.org/packages/36/16/cc08bd3e28e8081f15227b436e5c24d909256b238587fbb57655a49e4073/celltk2-0.4.3b1.tar.gz#sha256=4727382c029fed5ed3ed1db836c42707b707eab3e598a49bf2ee9ac1c5a7bf78 to build tracker '/tmp/pip-build-tracker-e7m6xrj7'
2022-09-25T17:28:25,109   Created temporary directory: /tmp/pip-build-env-vdock2ri
2022-09-25T17:28:25,130   Created temporary directory: /tmp/pip-standalone-pip-rrmej25g
2022-09-25T17:28:27,417   Installing build dependencies: started
2022-09-25T17:28:27,420   Running command pip subprocess to install build dependencies
2022-09-25T17:28:38,749   Using pip 22.1.2 from /tmp/pip-standalone-pip-rrmej25g/__env_pip__.zip/pip (python 3.9)
2022-09-25T17:28:40,472   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-09-25T17:28:44,618   Collecting setuptools>=42
2022-09-25T17:28:44,905     Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.4.0-py3-none-any.whl (1.2 MB)
2022-09-25T17:28:52,779   Installing collected packages: setuptools
2022-09-25T17:28:58,162   Successfully installed setuptools-65.4.0
2022-09-25T17:28:58,367   --- Logging error ---
2022-09-25T17:28:58,384   Traceback (most recent call last):
2022-09-25T17:28:58,385     File "/tmp/pip-standalone-pip-rrmej25g/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit
2022-09-25T17:28:58,385       self.console.print(renderable, overflow="ignore", crop=False, style=style)
2022-09-25T17:28:58,386     File "/tmp/pip-standalone-pip-rrmej25g/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print
2022-09-25T17:28:58,386       extend(render(renderable, render_options))
2022-09-25T17:28:58,386     File "/tmp/pip-standalone-pip-rrmej25g/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render
2022-09-25T17:28:58,387       for render_output in iter_render:
2022-09-25T17:28:58,387     File "/tmp/pip-standalone-pip-rrmej25g/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__
2022-09-25T17:28:58,387       for line in lines:
2022-09-25T17:28:58,388     File "/tmp/pip-standalone-pip-rrmej25g/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines
2022-09-25T17:28:58,388       for segment in segments:
2022-09-25T17:28:58,388     File "/tmp/pip-standalone-pip-rrmej25g/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render
2022-09-25T17:28:58,389       renderable = rich_cast(renderable)
2022-09-25T17:28:58,389     File "/tmp/pip-standalone-pip-rrmej25g/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast
2022-09-25T17:28:58,389       renderable = cast_method()
2022-09-25T17:28:58,390     File "/tmp/pip-standalone-pip-rrmej25g/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__
2022-09-25T17:28:58,390       pip_cmd = get_best_invocation_for_this_pip()
2022-09-25T17:28:58,390     File "/tmp/pip-standalone-pip-rrmej25g/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip
2022-09-25T17:28:58,391       if found_executable and os.path.samefile(
2022-09-25T17:28:58,391     File "/usr/lib/python3.9/genericpath.py", line 101, in samefile
2022-09-25T17:28:58,391       s2 = os.stat(f2)
2022-09-25T17:28:58,392   FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9'
2022-09-25T17:28:58,392   Call stack:
2022-09-25T17:28:58,398     File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main
2022-09-25T17:28:58,398       return _run_code(code, main_globals, None,
2022-09-25T17:28:58,399     File "/usr/lib/python3.9/runpy.py", line 87, in _run_code
2022-09-25T17:28:58,399       exec(code, run_globals)
2022-09-25T17:28:58,400     File "/tmp/pip-standalone-pip-rrmej25g/__env_pip__.zip/pip/__main__.py", line 31, in <module>
2022-09-25T17:28:58,400       sys.exit(_main())
2022-09-25T17:28:58,400     File "/tmp/pip-standalone-pip-rrmej25g/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main
2022-09-25T17:28:58,400       return command.main(cmd_args)
2022-09-25T17:28:58,401     File "/tmp/pip-standalone-pip-rrmej25g/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main
2022-09-25T17:28:58,401       return self._main(args)
2022-09-25T17:28:58,401     File "/tmp/pip-standalone-pip-rrmej25g/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main
2022-09-25T17:28:58,402       self.handle_pip_version_check(options)
2022-09-25T17:28:58,402     File "/tmp/pip-standalone-pip-rrmej25g/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check
2022-09-25T17:28:58,402       pip_self_version_check(session, options)
2022-09-25T17:28:58,402     File "/tmp/pip-standalone-pip-rrmej25g/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check
2022-09-25T17:28:58,403       logger.info("[present-rich] %s", upgrade_prompt)
2022-09-25T17:28:58,403     File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info
2022-09-25T17:28:58,403       self._log(INFO, msg, args, **kwargs)
2022-09-25T17:28:58,404     File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log
2022-09-25T17:28:58,404       self.handle(record)
2022-09-25T17:28:58,404     File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle
2022-09-25T17:28:58,405       self.callHandlers(record)
2022-09-25T17:28:58,405     File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers
2022-09-25T17:28:58,405       hdlr.handle(record)
2022-09-25T17:28:58,405     File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle
2022-09-25T17:28:58,406       self.emit(record)
2022-09-25T17:28:58,406     File "/tmp/pip-standalone-pip-rrmej25g/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit
2022-09-25T17:28:58,406       self.handleError(record)
2022-09-25T17:28:58,407   Message: '[present-rich] %s'
2022-09-25T17:28:58,407   Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),)
2022-09-25T17:28:58,923   Installing build dependencies: finished with status 'done'
2022-09-25T17:28:58,952   Getting requirements to build wheel: started
2022-09-25T17:28:58,954   Running command Getting requirements to build wheel
2022-09-25T17:29:05,061   /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:102: _ExperimentalProjectMetadata: Support for project metadata in `pyproject.toml` is still experimental and may be removed (or change) in future releases.
2022-09-25T17:29:05,062     warnings.warn(msg, _ExperimentalProjectMetadata)
2022-09-25T17:29:05,382   /usr/local/lib/python3.9/dist-packages/setuptools/config/_apply_pyprojecttoml.py:101: _WouldIgnoreField: !!


2022-09-25T17:29:05,383       ##########################################################################
2022-09-25T17:29:05,384       # configuration would be ignored/result in error due to `pyproject.toml` #
2022-09-25T17:29:05,384       ##########################################################################

2022-09-25T17:29:05,385       The following seems to be defined outside of `pyproject.toml`:

2022-09-25T17:29:05,386       `dependencies = ['setuptools>=41.2.0', 'tensorflow>=2.7.0,<2.9.0 ; platform_machine != "arm64"', 'tensorflow-macos>=2.7.0,<2.9.0 ; platform_machine == "arm64"', 'numpy>=1.20,<1.23', 'scipy>=1.6.3', 'scikit_learn>=1.0.1', 'scikit_image>=0.19.1', 'matplotlib>=3.4.1', 'plotly>=5.6.0', 'pandas>=1.3.1', 'kvxopt~=1.3.0.2', 'gurobipy>=9.5.0', 'h5py>=3.6.0', 'imageio>=2.13.0', 'mahotas>=1.4.5,<1.4.13', 'napari>=0.4.12', 'PyYAML>=6.0', 'SimpleITK>=2.1.1', 'tifffile>=2021.11.2', 'btrack==0.4.2', 'colorcet~=3.0.0', 'seaborn~=0.11.2']`

2022-09-25T17:29:05,386       According to the spec (see the link bellow), however, setuptools CANNOT
2022-09-25T17:29:05,387       consider this value unless 'dependencies' is listed as `dynamic`.

2022-09-25T17:29:05,387       https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2022-09-25T17:29:05,388       For the time being, `setuptools` will still consider the given value (as a
2022-09-25T17:29:05,388       **transitional** measure), but please note that future releases of setuptools will
2022-09-25T17:29:05,388       follow strictly the standard.

2022-09-25T17:29:05,389       To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively
2022-09-25T17:29:05,389       remove the `[project]` table from your file and rely entirely on other means of
2022-09-25T17:29:05,390       configuration.


2022-09-25T17:29:05,391   !!

2022-09-25T17:29:05,391     warnings.warn(msg, _WouldIgnoreField)
2022-09-25T17:29:07,011   running egg_info
2022-09-25T17:29:07,595   writing celltk2.egg-info/PKG-INFO
2022-09-25T17:29:08,216   writing dependency_links to celltk2.egg-info/dependency_links.txt
2022-09-25T17:29:11,003   writing requirements to celltk2.egg-info/requires.txt
2022-09-25T17:29:11,563   writing top-level names to celltk2.egg-info/top_level.txt
2022-09-25T17:29:12,203   package init file 'celltk/core/__init__.py' not found (or not a regular file)
2022-09-25T17:29:12,245   reading manifest file 'celltk2.egg-info/SOURCES.txt'
2022-09-25T17:29:12,252   adding license file 'LICENSE'
2022-09-25T17:29:12,262   writing manifest file 'celltk2.egg-info/SOURCES.txt'
2022-09-25T17:29:12,562   Getting requirements to build wheel: finished with status 'done'
2022-09-25T17:29:12,588   Created temporary directory: /tmp/pip-standalone-pip-b7694fy9
2022-09-25T17:29:14,865   Installing backend dependencies: started
2022-09-25T17:29:14,867   Running command pip subprocess to install backend dependencies
2022-09-25T17:29:26,129   Using pip 22.1.2 from /tmp/pip-standalone-pip-b7694fy9/__env_pip__.zip/pip (python 3.9)
2022-09-25T17:29:27,837   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-09-25T17:29:28,734   Collecting wheel
2022-09-25T17:29:28,769     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-09-25T17:29:35,758   Installing collected packages: wheel
2022-09-25T17:29:36,056     Creating /tmp/pip-build-env-vdock2ri/normal/bin
2022-09-25T17:29:36,061     changing mode of /tmp/pip-build-env-vdock2ri/normal/bin/wheel to 755
2022-09-25T17:29:36,088   Successfully installed wheel-0.37.1
2022-09-25T17:29:36,289   --- Logging error ---
2022-09-25T17:29:36,305   Traceback (most recent call last):
2022-09-25T17:29:36,305     File "/tmp/pip-standalone-pip-b7694fy9/__env_pip__.zip/pip/_internal/utils/logging.py", line 177, in emit
2022-09-25T17:29:36,305       self.console.print(renderable, overflow="ignore", crop=False, style=style)
2022-09-25T17:29:36,306     File "/tmp/pip-standalone-pip-b7694fy9/__env_pip__.zip/pip/_vendor/rich/console.py", line 1752, in print
2022-09-25T17:29:36,306       extend(render(renderable, render_options))
2022-09-25T17:29:36,306     File "/tmp/pip-standalone-pip-b7694fy9/__env_pip__.zip/pip/_vendor/rich/console.py", line 1390, in render
2022-09-25T17:29:36,307       for render_output in iter_render:
2022-09-25T17:29:36,307     File "/tmp/pip-standalone-pip-b7694fy9/__env_pip__.zip/pip/_internal/utils/logging.py", line 134, in __rich_console__
2022-09-25T17:29:36,307       for line in lines:
2022-09-25T17:29:36,308     File "/tmp/pip-standalone-pip-b7694fy9/__env_pip__.zip/pip/_vendor/rich/segment.py", line 245, in split_lines
2022-09-25T17:29:36,308       for segment in segments:
2022-09-25T17:29:36,308     File "/tmp/pip-standalone-pip-b7694fy9/__env_pip__.zip/pip/_vendor/rich/console.py", line 1368, in render
2022-09-25T17:29:36,309       renderable = rich_cast(renderable)
2022-09-25T17:29:36,309     File "/tmp/pip-standalone-pip-b7694fy9/__env_pip__.zip/pip/_vendor/rich/protocol.py", line 36, in rich_cast
2022-09-25T17:29:36,309       renderable = cast_method()
2022-09-25T17:29:36,309     File "/tmp/pip-standalone-pip-b7694fy9/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 130, in __rich__
2022-09-25T17:29:36,310       pip_cmd = get_best_invocation_for_this_pip()
2022-09-25T17:29:36,310     File "/tmp/pip-standalone-pip-b7694fy9/__env_pip__.zip/pip/_internal/utils/entrypoints.py", line 58, in get_best_invocation_for_this_pip
2022-09-25T17:29:36,310       if found_executable and os.path.samefile(
2022-09-25T17:29:36,311     File "/usr/lib/python3.9/genericpath.py", line 101, in samefile
2022-09-25T17:29:36,311       s2 = os.stat(f2)
2022-09-25T17:29:36,311   FileNotFoundError: [Errno 2] No such file or directory: '/usr/bin/pip3.9'
2022-09-25T17:29:36,312   Call stack:
2022-09-25T17:29:36,316     File "/usr/lib/python3.9/runpy.py", line 197, in _run_module_as_main
2022-09-25T17:29:36,316       return _run_code(code, main_globals, None,
2022-09-25T17:29:36,316     File "/usr/lib/python3.9/runpy.py", line 87, in _run_code
2022-09-25T17:29:36,317       exec(code, run_globals)
2022-09-25T17:29:36,317     File "/tmp/pip-standalone-pip-b7694fy9/__env_pip__.zip/pip/__main__.py", line 31, in <module>
2022-09-25T17:29:36,317       sys.exit(_main())
2022-09-25T17:29:36,318     File "/tmp/pip-standalone-pip-b7694fy9/__env_pip__.zip/pip/_internal/cli/main.py", line 70, in main
2022-09-25T17:29:36,318       return command.main(cmd_args)
2022-09-25T17:29:36,318     File "/tmp/pip-standalone-pip-b7694fy9/__env_pip__.zip/pip/_internal/cli/base_command.py", line 101, in main
2022-09-25T17:29:36,319       return self._main(args)
2022-09-25T17:29:36,319     File "/tmp/pip-standalone-pip-b7694fy9/__env_pip__.zip/pip/_internal/cli/base_command.py", line 223, in _main
2022-09-25T17:29:36,319       self.handle_pip_version_check(options)
2022-09-25T17:29:36,320     File "/tmp/pip-standalone-pip-b7694fy9/__env_pip__.zip/pip/_internal/cli/req_command.py", line 148, in handle_pip_version_check
2022-09-25T17:29:36,320       pip_self_version_check(session, options)
2022-09-25T17:29:36,320     File "/tmp/pip-standalone-pip-b7694fy9/__env_pip__.zip/pip/_internal/self_outdated_check.py", line 237, in pip_self_version_check
2022-09-25T17:29:36,320       logger.info("[present-rich] %s", upgrade_prompt)
2022-09-25T17:29:36,321     File "/usr/lib/python3.9/logging/__init__.py", line 1442, in info
2022-09-25T17:29:36,321       self._log(INFO, msg, args, **kwargs)
2022-09-25T17:29:36,321     File "/usr/lib/python3.9/logging/__init__.py", line 1585, in _log
2022-09-25T17:29:36,322       self.handle(record)
2022-09-25T17:29:36,322     File "/usr/lib/python3.9/logging/__init__.py", line 1595, in handle
2022-09-25T17:29:36,322       self.callHandlers(record)
2022-09-25T17:29:36,322     File "/usr/lib/python3.9/logging/__init__.py", line 1657, in callHandlers
2022-09-25T17:29:36,323       hdlr.handle(record)
2022-09-25T17:29:36,323     File "/usr/lib/python3.9/logging/__init__.py", line 948, in handle
2022-09-25T17:29:36,323       self.emit(record)
2022-09-25T17:29:36,324     File "/tmp/pip-standalone-pip-b7694fy9/__env_pip__.zip/pip/_internal/utils/logging.py", line 179, in emit
2022-09-25T17:29:36,324       self.handleError(record)
2022-09-25T17:29:36,324   Message: '[present-rich] %s'
2022-09-25T17:29:36,324   Arguments: (UpgradePrompt(old='22.1.2', new='22.2.2'),)
2022-09-25T17:29:36,772   Installing backend dependencies: finished with status 'done'
2022-09-25T17:29:36,796   Created temporary directory: /tmp/pip-modern-metadata-h1li82bk
2022-09-25T17:29:36,803   Preparing metadata (pyproject.toml): started
2022-09-25T17:29:36,805   Running command Preparing metadata (pyproject.toml)
2022-09-25T17:29:42,801   /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:102: _ExperimentalProjectMetadata: Support for project metadata in `pyproject.toml` is still experimental and may be removed (or change) in future releases.
2022-09-25T17:29:42,802     warnings.warn(msg, _ExperimentalProjectMetadata)
2022-09-25T17:29:43,113   /usr/local/lib/python3.9/dist-packages/setuptools/config/_apply_pyprojecttoml.py:101: _WouldIgnoreField: !!


2022-09-25T17:29:43,114       ##########################################################################
2022-09-25T17:29:43,114       # configuration would be ignored/result in error due to `pyproject.toml` #
2022-09-25T17:29:43,115       ##########################################################################

2022-09-25T17:29:43,115       The following seems to be defined outside of `pyproject.toml`:

2022-09-25T17:29:43,116       `dependencies = ['setuptools>=41.2.0', 'tensorflow>=2.7.0,<2.9.0 ; platform_machine != "arm64"', 'tensorflow-macos>=2.7.0,<2.9.0 ; platform_machine == "arm64"', 'numpy>=1.20,<1.23', 'scipy>=1.6.3', 'scikit_learn>=1.0.1', 'scikit_image>=0.19.1', 'matplotlib>=3.4.1', 'plotly>=5.6.0', 'pandas>=1.3.1', 'kvxopt~=1.3.0.2', 'gurobipy>=9.5.0', 'h5py>=3.6.0', 'imageio>=2.13.0', 'mahotas>=1.4.5,<1.4.13', 'napari>=0.4.12', 'PyYAML>=6.0', 'SimpleITK>=2.1.1', 'tifffile>=2021.11.2', 'btrack==0.4.2', 'colorcet~=3.0.0', 'seaborn~=0.11.2']`

2022-09-25T17:29:43,117       According to the spec (see the link bellow), however, setuptools CANNOT
2022-09-25T17:29:43,117       consider this value unless 'dependencies' is listed as `dynamic`.

2022-09-25T17:29:43,118       https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2022-09-25T17:29:43,118       For the time being, `setuptools` will still consider the given value (as a
2022-09-25T17:29:43,119       **transitional** measure), but please note that future releases of setuptools will
2022-09-25T17:29:43,119       follow strictly the standard.

2022-09-25T17:29:43,120       To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively
2022-09-25T17:29:43,120       remove the `[project]` table from your file and rely entirely on other means of
2022-09-25T17:29:43,120       configuration.


2022-09-25T17:29:43,121   !!

2022-09-25T17:29:43,122     warnings.warn(msg, _WouldIgnoreField)
2022-09-25T17:29:44,758   running dist_info
2022-09-25T17:29:45,361   creating /tmp/pip-modern-metadata-h1li82bk/celltk2.egg-info
2022-09-25T17:29:46,016   writing /tmp/pip-modern-metadata-h1li82bk/celltk2.egg-info/PKG-INFO
2022-09-25T17:29:46,584   writing dependency_links to /tmp/pip-modern-metadata-h1li82bk/celltk2.egg-info/dependency_links.txt
2022-09-25T17:29:49,413   writing requirements to /tmp/pip-modern-metadata-h1li82bk/celltk2.egg-info/requires.txt
2022-09-25T17:29:49,981   writing top-level names to /tmp/pip-modern-metadata-h1li82bk/celltk2.egg-info/top_level.txt
2022-09-25T17:29:49,983   writing manifest file '/tmp/pip-modern-metadata-h1li82bk/celltk2.egg-info/SOURCES.txt'
2022-09-25T17:29:50,625   package init file 'celltk/core/__init__.py' not found (or not a regular file)
2022-09-25T17:29:50,676   reading manifest file '/tmp/pip-modern-metadata-h1li82bk/celltk2.egg-info/SOURCES.txt'
2022-09-25T17:29:50,679   adding license file 'LICENSE'
2022-09-25T17:29:50,687   writing manifest file '/tmp/pip-modern-metadata-h1li82bk/celltk2.egg-info/SOURCES.txt'
2022-09-25T17:29:50,689   creating '/tmp/pip-modern-metadata-h1li82bk/celltk2-0.4.3b1.dist-info'
2022-09-25T17:29:50,888   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-09-25T17:29:51,205   Preparing metadata (pyproject.toml): finished with status 'done'
2022-09-25T17:29:51,220   Source in /tmp/pip-wheel-jptppq7l/celltk2_c2118ba85cb74ebfb5b392ba595357bc has version 0.4.3b1, which satisfies requirement celltk2==0.4.3b1 from https://files.pythonhosted.org/packages/36/16/cc08bd3e28e8081f15227b436e5c24d909256b238587fbb57655a49e4073/celltk2-0.4.3b1.tar.gz#sha256=4727382c029fed5ed3ed1db836c42707b707eab3e598a49bf2ee9ac1c5a7bf78
2022-09-25T17:29:51,222   Removed celltk2==0.4.3b1 from https://files.pythonhosted.org/packages/36/16/cc08bd3e28e8081f15227b436e5c24d909256b238587fbb57655a49e4073/celltk2-0.4.3b1.tar.gz#sha256=4727382c029fed5ed3ed1db836c42707b707eab3e598a49bf2ee9ac1c5a7bf78 from build tracker '/tmp/pip-build-tracker-e7m6xrj7'
2022-09-25T17:29:51,236 Created temporary directory: /tmp/pip-unpack-jomt7kxc
2022-09-25T17:29:51,237 Building wheels for collected packages: celltk2
2022-09-25T17:29:51,247   Created temporary directory: /tmp/pip-wheel-o17zop8r
2022-09-25T17:29:51,247   Destination directory: /tmp/pip-wheel-o17zop8r
2022-09-25T17:29:51,252   Building wheel for celltk2 (pyproject.toml): started
2022-09-25T17:29:51,254   Running command Building wheel for celltk2 (pyproject.toml)
2022-09-25T17:29:57,223   /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:102: _ExperimentalProjectMetadata: Support for project metadata in `pyproject.toml` is still experimental and may be removed (or change) in future releases.
2022-09-25T17:29:57,225     warnings.warn(msg, _ExperimentalProjectMetadata)
2022-09-25T17:29:57,537   /usr/local/lib/python3.9/dist-packages/setuptools/config/_apply_pyprojecttoml.py:101: _WouldIgnoreField: !!


2022-09-25T17:29:57,538       ##########################################################################
2022-09-25T17:29:57,538       # configuration would be ignored/result in error due to `pyproject.toml` #
2022-09-25T17:29:57,539       ##########################################################################

2022-09-25T17:29:57,539       The following seems to be defined outside of `pyproject.toml`:

2022-09-25T17:29:57,540       `dependencies = ['setuptools>=41.2.0', 'tensorflow>=2.7.0,<2.9.0 ; platform_machine != "arm64"', 'tensorflow-macos>=2.7.0,<2.9.0 ; platform_machine == "arm64"', 'numpy>=1.20,<1.23', 'scipy>=1.6.3', 'scikit_learn>=1.0.1', 'scikit_image>=0.19.1', 'matplotlib>=3.4.1', 'plotly>=5.6.0', 'pandas>=1.3.1', 'kvxopt~=1.3.0.2', 'gurobipy>=9.5.0', 'h5py>=3.6.0', 'imageio>=2.13.0', 'mahotas>=1.4.5,<1.4.13', 'napari>=0.4.12', 'PyYAML>=6.0', 'SimpleITK>=2.1.1', 'tifffile>=2021.11.2', 'btrack==0.4.2', 'colorcet~=3.0.0', 'seaborn~=0.11.2']`

2022-09-25T17:29:57,541       According to the spec (see the link bellow), however, setuptools CANNOT
2022-09-25T17:29:57,541       consider this value unless 'dependencies' is listed as `dynamic`.

2022-09-25T17:29:57,542       https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2022-09-25T17:29:57,542       For the time being, `setuptools` will still consider the given value (as a
2022-09-25T17:29:57,543       **transitional** measure), but please note that future releases of setuptools will
2022-09-25T17:29:57,543       follow strictly the standard.

2022-09-25T17:29:57,544       To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively
2022-09-25T17:29:57,544       remove the `[project]` table from your file and rely entirely on other means of
2022-09-25T17:29:57,544       configuration.


2022-09-25T17:29:57,545   !!

2022-09-25T17:29:57,546     warnings.warn(msg, _WouldIgnoreField)
2022-09-25T17:29:58,643   running bdist_wheel
2022-09-25T17:29:59,331   running build
2022-09-25T17:29:59,331   running build_py
2022-09-25T17:29:59,922   package init file 'celltk/core/__init__.py' not found (or not a regular file)
2022-09-25T17:29:59,926   creating build
2022-09-25T17:29:59,926   creating build/lib
2022-09-25T17:29:59,927   creating build/lib/celltk
2022-09-25T17:29:59,929   creating build/lib/celltk/core
2022-09-25T17:29:59,931   copying celltk/core/orchestrator.py -> build/lib/celltk/core
2022-09-25T17:29:59,937   copying celltk/core/arrays.py -> build/lib/celltk/core
2022-09-25T17:29:59,946   copying celltk/core/pipeline.py -> build/lib/celltk/core
2022-09-25T17:29:59,952   copying celltk/core/operation.py -> build/lib/celltk/core
2022-09-25T17:29:59,960   creating build/lib/celltk/external
2022-09-25T17:29:59,962   creating build/lib/celltk/external/kit_sch_ge
2022-09-25T17:29:59,963   creating build/lib/celltk/external/kit_sch_ge/tracker
2022-09-25T17:29:59,966   copying celltk/external/kit_sch_ge/tracker/graph.py -> build/lib/celltk/external/kit_sch_ge/tracker
2022-09-25T17:29:59,973   copying celltk/external/kit_sch_ge/tracker/export.py -> build/lib/celltk/external/kit_sch_ge/tracker
2022-09-25T17:29:59,978   copying celltk/external/kit_sch_ge/tracker/split_objects.py -> build/lib/celltk/external/kit_sch_ge/tracker
2022-09-25T17:29:59,983   copying celltk/external/kit_sch_ge/tracker/utils.py -> build/lib/celltk/external/kit_sch_ge/tracker
2022-09-25T17:29:59,988   copying celltk/external/kit_sch_ge/tracker/flow.py -> build/lib/celltk/external/kit_sch_ge/tracker
2022-09-25T17:29:59,992   copying celltk/external/kit_sch_ge/tracker/extract_data.py -> build/lib/celltk/external/kit_sch_ge/tracker
2022-09-25T17:29:59,996   copying celltk/external/kit_sch_ge/tracker/tracking.py -> build/lib/celltk/external/kit_sch_ge/tracker
2022-09-25T17:30:00,001   copying celltk/external/kit_sch_ge/tracker/__init__.py -> build/lib/celltk/external/kit_sch_ge/tracker
2022-09-25T17:30:00,004   copying celltk/external/kit_sch_ge/tracker/postprocessing.py -> build/lib/celltk/external/kit_sch_ge/tracker
2022-09-25T17:30:00,012   copying celltk/external/kit_sch_ge/setup.py -> build/lib/celltk/external/kit_sch_ge
2022-09-25T17:30:00,015   copying celltk/external/kit_sch_ge/create_synth_segm_data.py -> build/lib/celltk/external/kit_sch_ge
2022-09-25T17:30:00,020   copying celltk/external/kit_sch_ge/run_tracking.py -> build/lib/celltk/external/kit_sch_ge
2022-09-25T17:30:00,023   copying celltk/external/kit_sch_ge/config.py -> build/lib/celltk/external/kit_sch_ge
2022-09-25T17:30:00,027   copying celltk/external/kit_sch_ge/__init__.py -> build/lib/celltk/external/kit_sch_ge
2022-09-25T17:30:00,031   creating build/lib/celltk/external/misic
2022-09-25T17:30:00,033   copying celltk/external/misic/misic.py -> build/lib/celltk/external/misic
2022-09-25T17:30:00,036   copying celltk/external/misic/utils.py -> build/lib/celltk/external/misic
2022-09-25T17:30:00,040   copying celltk/external/misic/extras.py -> build/lib/celltk/external/misic
2022-09-25T17:30:00,043   copying celltk/external/misic/__init__.py -> build/lib/celltk/external/misic
2022-09-25T17:30:00,049   creating build/lib/celltk/utils
2022-09-25T17:30:00,050   copying celltk/utils/metric_utils.py -> build/lib/celltk/utils
2022-09-25T17:30:00,054   copying celltk/utils/estimator_utils.py -> build/lib/celltk/utils
2022-09-25T17:30:00,058   copying celltk/utils/operation_utils.py -> build/lib/celltk/utils
2022-09-25T17:30:00,064   copying celltk/utils/bayes_utils.py -> build/lib/celltk/utils
2022-09-25T17:30:00,067   copying celltk/utils/_fastkde.py -> build/lib/celltk/utils
2022-09-25T17:30:00,071   copying celltk/utils/utils.py -> build/lib/celltk/utils
2022-09-25T17:30:00,075   copying celltk/utils/slurm_utils.py -> build/lib/celltk/utils
2022-09-25T17:30:00,080   copying celltk/utils/kit_sch_ge_utils.py -> build/lib/celltk/utils
2022-09-25T17:30:00,084   copying celltk/utils/filter_utils.py -> build/lib/celltk/utils
2022-09-25T17:30:00,089   copying celltk/utils/peak_utils.py -> build/lib/celltk/utils
2022-09-25T17:30:00,094   copying celltk/utils/cli_utils.py -> build/lib/celltk/utils
2022-09-25T17:30:00,098   copying celltk/utils/process_utils.py -> build/lib/celltk/utils
2022-09-25T17:30:00,102   copying celltk/utils/plot_utils.py -> build/lib/celltk/utils
2022-09-25T17:30:00,110   copying celltk/utils/_types.py -> build/lib/celltk/utils
2022-09-25T17:30:00,114   copying celltk/utils/log_utils.py -> build/lib/celltk/utils
2022-09-25T17:30:00,118   copying celltk/utils/__init__.py -> build/lib/celltk/utils
2022-09-25T17:30:00,121   copying celltk/utils/unet_model.py -> build/lib/celltk/utils
2022-09-25T17:30:00,127   copying celltk/utils/file_utils.py -> build/lib/celltk/utils
2022-09-25T17:30:00,132   copying celltk/evaluate.py -> build/lib/celltk
2022-09-25T17:30:00,136   copying celltk/process.py -> build/lib/celltk
2022-09-25T17:30:00,142   copying celltk/track.py -> build/lib/celltk
2022-09-25T17:30:00,147   copying celltk/segment.py -> build/lib/celltk
2022-09-25T17:30:00,154   copying celltk/__init__.py -> build/lib/celltk
2022-09-25T17:30:00,157   copying celltk/extract.py -> build/lib/celltk
2022-09-25T17:30:00,162   running egg_info
2022-09-25T17:30:01,410   writing celltk2.egg-info/PKG-INFO
2022-09-25T17:30:01,974   writing dependency_links to celltk2.egg-info/dependency_links.txt
2022-09-25T17:30:04,783   writing requirements to celltk2.egg-info/requires.txt
2022-09-25T17:30:05,346   writing top-level names to celltk2.egg-info/top_level.txt
2022-09-25T17:30:05,397   reading manifest file 'celltk2.egg-info/SOURCES.txt'
2022-09-25T17:30:05,402   adding license file 'LICENSE'
2022-09-25T17:30:05,412   writing manifest file 'celltk2.egg-info/SOURCES.txt'
2022-09-25T17:30:05,418   copying celltk/external/misic/MiSiCv2.h5 -> build/lib/celltk/external/misic
2022-09-25T17:30:06,978   installing to build/bdist.linux-armv7l/wheel
2022-09-25T17:30:06,979   running install
2022-09-25T17:30:07,041   running install_lib
2022-09-25T17:30:07,631   creating build/bdist.linux-armv7l
2022-09-25T17:30:07,632   creating build/bdist.linux-armv7l/wheel
2022-09-25T17:30:07,635   creating build/bdist.linux-armv7l/wheel/celltk
2022-09-25T17:30:07,636   copying build/lib/celltk/evaluate.py -> build/bdist.linux-armv7l/wheel/celltk
2022-09-25T17:30:07,641   creating build/bdist.linux-armv7l/wheel/celltk/core
2022-09-25T17:30:07,643   copying build/lib/celltk/core/orchestrator.py -> build/bdist.linux-armv7l/wheel/celltk/core
2022-09-25T17:30:07,648   copying build/lib/celltk/core/arrays.py -> build/bdist.linux-armv7l/wheel/celltk/core
2022-09-25T17:30:07,655   copying build/lib/celltk/core/pipeline.py -> build/bdist.linux-armv7l/wheel/celltk/core
2022-09-25T17:30:07,661   copying build/lib/celltk/core/operation.py -> build/bdist.linux-armv7l/wheel/celltk/core
2022-09-25T17:30:07,667   copying build/lib/celltk/process.py -> build/bdist.linux-armv7l/wheel/celltk
2022-09-25T17:30:07,672   copying build/lib/celltk/track.py -> build/bdist.linux-armv7l/wheel/celltk
2022-09-25T17:30:07,679   creating build/bdist.linux-armv7l/wheel/celltk/external
2022-09-25T17:30:07,681   creating build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge
2022-09-25T17:30:07,683   copying build/lib/celltk/external/kit_sch_ge/setup.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge
2022-09-25T17:30:07,686   copying build/lib/celltk/external/kit_sch_ge/create_synth_segm_data.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge
2022-09-25T17:30:07,692   copying build/lib/celltk/external/kit_sch_ge/run_tracking.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge
2022-09-25T17:30:07,695   copying build/lib/celltk/external/kit_sch_ge/config.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge
2022-09-25T17:30:07,700   creating build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-09-25T17:30:07,702   copying build/lib/celltk/external/kit_sch_ge/tracker/graph.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-09-25T17:30:07,709   copying build/lib/celltk/external/kit_sch_ge/tracker/export.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-09-25T17:30:07,714   copying build/lib/celltk/external/kit_sch_ge/tracker/split_objects.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-09-25T17:30:07,718   copying build/lib/celltk/external/kit_sch_ge/tracker/utils.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-09-25T17:30:07,721   copying build/lib/celltk/external/kit_sch_ge/tracker/flow.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-09-25T17:30:07,724   copying build/lib/celltk/external/kit_sch_ge/tracker/extract_data.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-09-25T17:30:07,728   copying build/lib/celltk/external/kit_sch_ge/tracker/tracking.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-09-25T17:30:07,732   copying build/lib/celltk/external/kit_sch_ge/tracker/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-09-25T17:30:07,735   copying build/lib/celltk/external/kit_sch_ge/tracker/postprocessing.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-09-25T17:30:07,740   copying build/lib/celltk/external/kit_sch_ge/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge
2022-09-25T17:30:07,745   creating build/bdist.linux-armv7l/wheel/celltk/external/misic
2022-09-25T17:30:07,746   copying build/lib/celltk/external/misic/MiSiCv2.h5 -> build/bdist.linux-armv7l/wheel/celltk/external/misic
2022-09-25T17:30:08,131   copying build/lib/celltk/external/misic/misic.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic
2022-09-25T17:30:08,134   copying build/lib/celltk/external/misic/utils.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic
2022-09-25T17:30:08,138   copying build/lib/celltk/external/misic/extras.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic
2022-09-25T17:30:08,141   copying build/lib/celltk/external/misic/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic
2022-09-25T17:30:08,143   copying build/lib/celltk/segment.py -> build/bdist.linux-armv7l/wheel/celltk
2022-09-25T17:30:08,149   copying build/lib/celltk/__init__.py -> build/bdist.linux-armv7l/wheel/celltk
2022-09-25T17:30:08,152   copying build/lib/celltk/extract.py -> build/bdist.linux-armv7l/wheel/celltk
2022-09-25T17:30:08,159   creating build/bdist.linux-armv7l/wheel/celltk/utils
2022-09-25T17:30:08,160   copying build/lib/celltk/utils/metric_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-09-25T17:30:08,163   copying build/lib/celltk/utils/estimator_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-09-25T17:30:08,167   copying build/lib/celltk/utils/operation_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-09-25T17:30:08,173   copying build/lib/celltk/utils/bayes_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-09-25T17:30:08,178   copying build/lib/celltk/utils/_fastkde.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-09-25T17:30:08,181   copying build/lib/celltk/utils/utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-09-25T17:30:08,187   copying build/lib/celltk/utils/slurm_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-09-25T17:30:08,193   copying build/lib/celltk/utils/kit_sch_ge_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-09-25T17:30:08,197   copying build/lib/celltk/utils/filter_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-09-25T17:30:08,201   copying build/lib/celltk/utils/peak_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-09-25T17:30:08,206   copying build/lib/celltk/utils/cli_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-09-25T17:30:08,210   copying build/lib/celltk/utils/process_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-09-25T17:30:08,213   copying build/lib/celltk/utils/plot_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-09-25T17:30:08,224   copying build/lib/celltk/utils/_types.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-09-25T17:30:08,227   copying build/lib/celltk/utils/log_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-09-25T17:30:08,230   copying build/lib/celltk/utils/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-09-25T17:30:08,233   copying build/lib/celltk/utils/unet_model.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-09-25T17:30:08,238   copying build/lib/celltk/utils/file_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-09-25T17:30:08,241   running install_egg_info
2022-09-25T17:30:08,835   Copying celltk2.egg-info to build/bdist.linux-armv7l/wheel/celltk2-0.4.3b1-py3.9.egg-info
2022-09-25T17:30:08,855   running install_scripts
2022-09-25T17:30:08,958   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-09-25T17:30:08,968   creating build/bdist.linux-armv7l/wheel/celltk2-0.4.3b1.dist-info/WHEEL
2022-09-25T17:30:08,972   creating '/tmp/pip-wheel-o17zop8r/tmpyoffw8k7/celltk2-0.4.3b1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-09-25T17:30:08,978   adding 'celltk/__init__.py'
2022-09-25T17:30:08,981   adding 'celltk/evaluate.py'
2022-09-25T17:30:08,986   adding 'celltk/extract.py'
2022-09-25T17:30:08,994   adding 'celltk/process.py'
2022-09-25T17:30:09,006   adding 'celltk/segment.py'
2022-09-25T17:30:09,014   adding 'celltk/track.py'
2022-09-25T17:30:09,033   adding 'celltk/core/arrays.py'
2022-09-25T17:30:09,047   adding 'celltk/core/operation.py'
2022-09-25T17:30:09,054   adding 'celltk/core/orchestrator.py'
2022-09-25T17:30:09,064   adding 'celltk/core/pipeline.py'
2022-09-25T17:30:09,069   adding 'celltk/external/kit_sch_ge/__init__.py'
2022-09-25T17:30:09,071   adding 'celltk/external/kit_sch_ge/config.py'
2022-09-25T17:30:09,078   adding 'celltk/external/kit_sch_ge/create_synth_segm_data.py'
2022-09-25T17:30:09,081   adding 'celltk/external/kit_sch_ge/run_tracking.py'
2022-09-25T17:30:09,083   adding 'celltk/external/kit_sch_ge/setup.py'
2022-09-25T17:30:09,086   adding 'celltk/external/kit_sch_ge/tracker/__init__.py'
2022-09-25T17:30:09,090   adding 'celltk/external/kit_sch_ge/tracker/export.py'
2022-09-25T17:30:09,093   adding 'celltk/external/kit_sch_ge/tracker/extract_data.py'
2022-09-25T17:30:09,096   adding 'celltk/external/kit_sch_ge/tracker/flow.py'
2022-09-25T17:30:09,108   adding 'celltk/external/kit_sch_ge/tracker/graph.py'
2022-09-25T17:30:09,119   adding 'celltk/external/kit_sch_ge/tracker/postprocessing.py'
2022-09-25T17:30:09,123   adding 'celltk/external/kit_sch_ge/tracker/split_objects.py'
2022-09-25T17:30:09,129   adding 'celltk/external/kit_sch_ge/tracker/tracking.py'
2022-09-25T17:30:09,132   adding 'celltk/external/kit_sch_ge/tracker/utils.py'
2022-09-25T17:30:11,870   adding 'celltk/external/misic/MiSiCv2.h5'
2022-09-25T17:30:12,019   adding 'celltk/external/misic/__init__.py'
2022-09-25T17:30:12,022   adding 'celltk/external/misic/extras.py'
2022-09-25T17:30:12,025   adding 'celltk/external/misic/misic.py'
2022-09-25T17:30:12,028   adding 'celltk/external/misic/utils.py'
2022-09-25T17:30:12,031   adding 'celltk/utils/__init__.py'
2022-09-25T17:30:12,034   adding 'celltk/utils/_fastkde.py'
2022-09-25T17:30:12,037   adding 'celltk/utils/_types.py'
2022-09-25T17:30:12,040   adding 'celltk/utils/bayes_utils.py'
2022-09-25T17:30:12,043   adding 'celltk/utils/cli_utils.py'
2022-09-25T17:30:12,046   adding 'celltk/utils/estimator_utils.py'
2022-09-25T17:30:12,048   adding 'celltk/utils/file_utils.py'
2022-09-25T17:30:12,051   adding 'celltk/utils/filter_utils.py'
2022-09-25T17:30:12,055   adding 'celltk/utils/kit_sch_ge_utils.py'
2022-09-25T17:30:12,058   adding 'celltk/utils/log_utils.py'
2022-09-25T17:30:12,060   adding 'celltk/utils/metric_utils.py'
2022-09-25T17:30:12,070   adding 'celltk/utils/operation_utils.py'
2022-09-25T17:30:12,077   adding 'celltk/utils/peak_utils.py'
2022-09-25T17:30:12,098   adding 'celltk/utils/plot_utils.py'
2022-09-25T17:30:12,103   adding 'celltk/utils/process_utils.py'
2022-09-25T17:30:12,110   adding 'celltk/utils/slurm_utils.py'
2022-09-25T17:30:12,119   adding 'celltk/utils/unet_model.py'
2022-09-25T17:30:12,124   adding 'celltk/utils/utils.py'
2022-09-25T17:30:12,129   adding 'celltk2-0.4.3b1.dist-info/LICENSE'
2022-09-25T17:30:12,131   adding 'celltk2-0.4.3b1.dist-info/METADATA'
2022-09-25T17:30:12,133   adding 'celltk2-0.4.3b1.dist-info/WHEEL'
2022-09-25T17:30:12,134   adding 'celltk2-0.4.3b1.dist-info/top_level.txt'
2022-09-25T17:30:12,137   adding 'celltk2-0.4.3b1.dist-info/RECORD'
2022-09-25T17:30:12,397   removing build/bdist.linux-armv7l/wheel
2022-09-25T17:30:12,761   Building wheel for celltk2 (pyproject.toml): finished with status 'done'
2022-09-25T17:30:13,136   Created wheel for celltk2: filename=celltk2-0.4.3b1-py3-none-any.whl size=6966907 sha256=ffb12aab0fe9139f35de206b128929c86cc316f8a2953d2cc0a2eeccece6737c
2022-09-25T17:30:13,138   Stored in directory: /tmp/pip-ephem-wheel-cache-2oxhw9yb/wheels/d2/98/8c/7c28c496945805e50b052a30afb387bb4c2544ad4560efecbb
2022-09-25T17:30:13,172 Successfully built celltk2
2022-09-25T17:30:13,640 Removed build tracker: '/tmp/pip-build-tracker-e7m6xrj7'